Citrus Sinensis ID: 017595
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | 2.2.26 [Sep-21-2011] | |||||||
| A9X7L0 | 364 | Anthranilate N-methyltran | N/A | no | 0.975 | 0.989 | 0.553 | 1e-119 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.978 | 0.989 | 0.522 | 1e-112 | |
| Q43046 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.940 | 0.950 | 0.524 | 1e-111 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.940 | 0.950 | 0.530 | 1e-111 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.940 | 0.950 | 0.524 | 1e-111 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.943 | 0.969 | 0.52 | 1e-110 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.943 | 0.953 | 0.52 | 1e-109 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.972 | 0.988 | 0.513 | 1e-109 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.940 | 0.961 | 0.515 | 1e-109 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.937 | 0.988 | 0.522 | 1e-108 |
| >sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 281/367 (76%), Gaps = 7/367 (1%)
Query: 3 SSAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPG 62
S + TQ+KH E EE+EE++YS AMQL+M+IVLP + Q+A +LGVFEIIAKA PG
Sbjct: 5 SESHTQYKHG-----VEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKA-PG 58
Query: 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122
+LSA++IA + ++NP VMLDR+LRLLV++RVL CS+S +RLY L V+KYFV
Sbjct: 59 GRLSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPA-GERLYGLTSVSKYFV 117
Query: 123 LNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVF 182
+QDG SL +A+ D+ ++ W + AV++GGIPFN+VHGM ++EYA ++S+F+ +
Sbjct: 118 PDQDGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTY 177
Query: 183 NKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVI 242
++AM NH++I + RIL+ Y GFE + +LVDVGGGLGVTL++I S+YPHI+ +NFDLPHV+
Sbjct: 178 HRAMFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVV 237
Query: 243 QNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302
Q+A SY GV+H+GGNMFE +P+GDAILMKWILH WDDE CL +LKNCY+A PENGK+I++
Sbjct: 238 QDAASYPGVEHVGGNMFESVPEGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVM 297
Query: 303 DRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNF 362
+ + TPE +++ARE S+ D++++ + GGRERT +EF LA AGF G+N+ C VCN
Sbjct: 298 NSVVPETPEVSSSARETSLLDVLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNL 357
Query: 363 CIIEFIK 369
I+EF K
Sbjct: 358 HIMEFFK 364
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Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others. Ruta graveolens (taxid: 37565) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/371 (52%), Positives = 254/371 (68%), Gaps = 10/371 (2%)
Query: 1 MDSSAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAG 60
M S+ +TQ H +EE FAMQLA + VLP +++A EL + EIIAKAG
Sbjct: 1 MGSTGETQITPTHISDEEAN--------LFAMQLASASVLPMILKSALELDLLEIIAKAG 52
Query: 61 PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVA 118
PGA++S +IA+Q+P+ NP+ VMLDR+LRLL +L CS+ + D QRLY LA VA
Sbjct: 53 PGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVA 112
Query: 119 KYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRF 178
KY V N+DGVS+ L M D+ +++ WY L DAVL GGIPFNK +GM +EY G D RF
Sbjct: 113 KYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRF 172
Query: 179 NGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL 238
N VFNK M +H++I M +IL++Y GFE +K LVDVGGG G +N I S+YP I+G+NFDL
Sbjct: 173 NKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL 232
Query: 239 PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGK 298
PHVI++APSY GV+H+GG+MF IPK DA+ MKWI H+W DEHCL LKNCYEA+P+NGK
Sbjct: 233 PHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGK 292
Query: 299 IIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358
+I+ + + V P+++ A + D+IML GG+ERT +EF LA AGF G C
Sbjct: 293 VIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 352
Query: 359 VCNFCIIEFIK 369
N I+EF+K
Sbjct: 353 AFNTYIMEFLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 246/349 (70%), Gaps = 2/349 (0%)
Query: 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG 82
++E+ + FAMQLA + VLP ++ A EL + EI+AKAGPGA LS ++IA+ +P++NP+
Sbjct: 15 SDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAP 74
Query: 83 VMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
VMLDRILRLL + +L CSL D +RLY LAPV K+ N+DGVS+ PL M D+
Sbjct: 75 VMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDK 134
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+++ WY L DA+L+GGIPFNK +GM +EY G D RFN VFNK M +H++I M +IL++
Sbjct: 135 VLMESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILET 194
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GFE + LVDVGGG G +N I S+YP I+G+NFDLPHVI++APSY GV+H+GG+MF
Sbjct: 195 YKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFV 254
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+P DA+ MKWI H+W D HCL LKNCY+A+PENGK+I+++ + V P+ + A +
Sbjct: 255 SVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVV 314
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D+IML GG+ERT +EF LAN AGF G C N +IEF K
Sbjct: 315 HVDVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIEFRK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 247/349 (70%), Gaps = 2/349 (0%)
Query: 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG 82
++E+ FAMQLA + VLP ++AA EL + EI+AKAGPG LS IA+Q+P++NP+
Sbjct: 15 SDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAP 74
Query: 83 VMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
VMLDR+LRLL + +L SL + D +RLY L PV K+ N++GVS+ PL M D+
Sbjct: 75 VMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDK 134
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+L+ WY L DAVL+GGIPFNK +GM +EY G D RFN VFN+ M +H++I M +IL++
Sbjct: 135 VLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILET 194
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GFE + +VDVGGG G LN+I S+YP I+G+NFDLPHVI++AP Y GV+H+GG+MF
Sbjct: 195 YKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFV 254
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+PKGDAI MKWI H+W DEHCL LKNCY A+P+NGK+I+ + + V P+++ A +
Sbjct: 255 SVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVV 314
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D+IML GG+ERT QEF ALA AGF G N C N +IEF+K
Sbjct: 315 HIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 245/349 (70%), Gaps = 2/349 (0%)
Query: 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG 82
++E+ + FAMQLA + VLP ++ A EL + EI+AKAGPGA LS ++IA+ +P++NP+
Sbjct: 15 SDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAP 74
Query: 83 VMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
VMLDRILRLL + +L CSL D +RLY LAPV K+ N+DGVS+ PL M D+
Sbjct: 75 VMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDK 134
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+++ WY L DA+L GGIPFNK +GM +EY G D RFN VFNK M +H++I M +IL++
Sbjct: 135 VLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILET 194
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GFE + LVDVGGG G +N I S+YP I+G+NFDLPHVI++APSY GV+H+GG+MF
Sbjct: 195 YKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFV 254
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+PK DA+ MKWI H+W D HCL LKNCY+A+PENGK+I+++ + V P+ + A +
Sbjct: 255 SVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVV 314
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D+IML GG+ERT +EF LA AGF G C N +IEF K
Sbjct: 315 HVDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 182/350 (52%), Positives = 247/350 (70%), Gaps = 2/350 (0%)
Query: 22 ENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNT 81
+ E++ + FAMQLA + VLP +++A EL + EI+AKAGPGA +S +++AAQ+P++NP
Sbjct: 10 QTEDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTKNPEA 69
Query: 82 GVMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGD 139
VMLDR+LRLL T VL C+L + D +RLYSLAPV K N DGVS+ PLL M D
Sbjct: 70 PVMLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKNADGVSVAPLLLMNQD 129
Query: 140 QAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILD 199
+ +++ WY L DAVL GG+PFNK +GM +EY G D RFN VFN+ M +H+++ M +IL+
Sbjct: 130 KVLMESWYHLTDAVLDGGVPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTMTMKKILE 189
Query: 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMF 259
Y GFE + +VDVGGG G T+N+I S+YP I+G+NFDL HVI++AP+Y GV+H+G +MF
Sbjct: 190 DYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPAYPGVEHVGRDMF 249
Query: 260 ERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA 319
+PK DAI MKWI H+W DEHCL LKNCYEA+P NGK+++ + + TP+ +AA + A
Sbjct: 250 VSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNA 309
Query: 320 SMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
DI+ML GG+ERT +EF ALA AGF G C ++EF K
Sbjct: 310 VHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 182/350 (52%), Positives = 245/350 (70%), Gaps = 2/350 (0%)
Query: 22 ENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNT 81
++EE+ FAMQLA + VLP +++A EL + E IAKAGPGA +S +Q+AA +PS P+T
Sbjct: 16 DDEEEACMFAMQLASASVLPMVLKSAIELNLLESIAKAGPGAYVSPSQLAAALPSSQPDT 75
Query: 82 GVMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGD 139
VMLDRILRLL + VL C L D +RLY LAPV K+ N DGVS+ PLL M D
Sbjct: 76 PVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFLTKNSDGVSMAPLLLMNQD 135
Query: 140 QAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILD 199
+ +++ WY L DAVL GGIPFNK +GM +EY G D RFN VFN+ M NH++I M +IL
Sbjct: 136 KILMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTITMKKILQ 195
Query: 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMF 259
+Y+GF +K +VDVGGG G TLN+I S+YP+++G+NFDLPHV+++APSY GV+H+GG+MF
Sbjct: 196 TYDGFGGLKTVVDVGGGTGATLNMIISKYPNLKGINFDLPHVVEDAPSYAGVEHVGGDMF 255
Query: 260 ERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA 319
+PKGDAI MKWI H+W D HCL LKNCY+A+P++GK+I+ + + P++ +
Sbjct: 256 VSVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPKDGKVILAECILPEAPDSKLTTKNV 315
Query: 320 SMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
+ D+IML GG+ERT +EF A +AGF N C N +IE+ K
Sbjct: 316 ILIDVIMLAHNPGGKERTEKEFEAFGKQAGFKSFNKACCAYNTWVIEYYK 365
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 255/368 (69%), Gaps = 9/368 (2%)
Query: 4 SAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGA 63
SA +K+ +EEEE AM+LA + VLP +++A EL + E+I K+GPGA
Sbjct: 3 SANPDNKNSMTKEEEE-------ACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGA 55
Query: 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYF 121
+S +++AAQ+P++NP+ VMLDRILRLL + VL C+L D +RLYSLAPV K+
Sbjct: 56 YVSPSELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFL 115
Query: 122 VLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGV 181
N+DGVS+ LL M D+ +++ WY L DAVL+GGIPFNK +GM +EY G D RFN V
Sbjct: 116 TKNEDGVSMAALLLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKV 175
Query: 182 FNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHV 241
FN+ M NH++I+M +IL+ Y GF+ +K +VDVGGG G TLN+I S+YP I+G+NFDLPHV
Sbjct: 176 FNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHV 235
Query: 242 IQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301
I++APSY GV H+GG+MF +PKGDAI MKWI H+W D HCL LKNC+EA+PENGK+I+
Sbjct: 236 IEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVIL 295
Query: 302 IDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCN 361
+ + P++T + + D+IML GG+ERT +EF ALA AGF G C N
Sbjct: 296 AECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYN 355
Query: 362 FCIIEFIK 369
I+E +K
Sbjct: 356 SWIMELLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 180/349 (51%), Positives = 245/349 (70%), Gaps = 2/349 (0%)
Query: 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG 82
+EE+ + FAMQLA + VLP +++A EL + E+I K+G GA +S +AAQ+P+ NP+
Sbjct: 13 DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTTNPDAH 72
Query: 83 VMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
VMLDRILRLL + +L C L + D +RLY LAPV K+ N+DGVS+ PL M D+
Sbjct: 73 VMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDK 132
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+++ WY L+DAV+ GGIPFNK +GM +EY G D RFN VFN+ M NH++I M +IL++
Sbjct: 133 VLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILET 192
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GF+ +K +VDVGGG G TLN+I S+YP I+G+NFDLPHVI++APSY GV+H+GG+MF
Sbjct: 193 YTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFV 252
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+PKGDAI MKWI H+W DEHC+ LKNCY+A+P+NGK+I+ + + P+ A +
Sbjct: 253 SVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATKNVV 312
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D+IML GG+ERT +EF LA AGF N C N I+E +K
Sbjct: 313 HIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/348 (52%), Positives = 244/348 (70%), Gaps = 2/348 (0%)
Query: 24 EEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGV 83
EE+ FAM LA + VLP +++A EL + E+IAKAGPGA +S +++AAQ+P+ NP +
Sbjct: 3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62
Query: 84 MLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQA 141
MLDRILRLL T VL C L++ D +RLY LAPV K+ N DGVS+ PLL M D+
Sbjct: 63 MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122
Query: 142 ILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSY 201
+++ WY L DAVL GGIPFNK +GM +EY G D RFN VFN+ M NH++I M +IL+ Y
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182
Query: 202 NGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER 261
GFE +K +VDVGGG G TLN+I S+YP I+G+NF+LPHV+++APS+ GV+H+GG+MF
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242
Query: 262 IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321
+PKGDAI MKWI H+W D+HC LLKNCY+A+P+NGK+I+ + + P+ + A +
Sbjct: 243 VPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVH 302
Query: 322 TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++ML GG+ERT +EF ALA AGF C N I+E K
Sbjct: 303 VDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | ||||||
| 224128073 | 358 | catechol o-methyltransferase related [Po | 0.937 | 0.966 | 0.555 | 1e-120 | |
| 224068173 | 359 | catechol o-methyltransferase [Populus tr | 0.937 | 0.963 | 0.56 | 1e-119 | |
| 255548061 | 359 | o-methyltransferase, putative [Ricinus c | 0.970 | 0.997 | 0.551 | 1e-119 | |
| 284437809 | 377 | O-methyltransferase-like protein [Prunus | 1.0 | 0.978 | 0.546 | 1e-119 | |
| 357512657 | 362 | Caffeic acid 3-O-methyltransferase [Medi | 0.953 | 0.972 | 0.553 | 1e-118 | |
| 388494808 | 362 | unknown [Medicago truncatula] | 0.953 | 0.972 | 0.553 | 1e-118 | |
| 268528131 | 356 | caffeic acid O-methyltransferase 3 [Goss | 0.940 | 0.974 | 0.547 | 1e-117 | |
| 342161927 | 364 | RecName: Full=Anthranilate N-methyltrans | 0.975 | 0.989 | 0.553 | 1e-117 | |
| 224068181 | 336 | catechol o-methyltransferase [Populus tr | 0.907 | 0.997 | 0.566 | 1e-115 | |
| 255647474 | 372 | unknown [Glycine max] | 0.945 | 0.938 | 0.540 | 1e-114 |
| >gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 194/349 (55%), Positives = 270/349 (77%), Gaps = 3/349 (0%)
Query: 21 EENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPN 80
+E +++ + +AMQLA+S VLP +M +A +LG+FEIIAKAGP AKLSA+ +AAQ+P++NP+
Sbjct: 13 DEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNPD 72
Query: 81 TGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
+MLDRILRLL ++ VL CS+ + +RLYSLAPV+K++V N+DGVSL P +A+ D
Sbjct: 73 APMMLDRILRLLASHDVLGCSVDGS---ERLYSLAPVSKHYVRNKDGVSLGPFMALIQDN 129
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
L W +L DAVL+GG+ F++VHG +EY G D RFN VFN AM N T++V+ +L++
Sbjct: 130 VFLQSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEA 189
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GF+ +KQLV++GGG+G T+ I S+YP I+G+NFDLPHVI++APS GV+H+GG+MFE
Sbjct: 190 YTGFKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFE 249
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+PKGDAI +KWILH+W D+HCL LLKNCY+AIP+NGK+I+++ + +T + + AAR S
Sbjct: 250 SVPKGDAIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAIS 309
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++M+ Q GG+ERT EFMALA AGF G+ YE FVCNF ++EF K
Sbjct: 310 QLDVLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 196/350 (56%), Positives = 269/350 (76%), Gaps = 4/350 (1%)
Query: 21 EENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPN 80
+E +++ + +AMQLA+S VLP ++ A +LG+FEIIAKAGP KLSAA IAA++P+ NP+
Sbjct: 13 DEAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPD 72
Query: 81 TGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
T MLDRILRLL +++VL C + + +R YSLAPV+ YFV NQ+GVSL P +A+ +
Sbjct: 73 TPKMLDRILRLLASHQVLCCFVDGS---ERFYSLAPVSMYFVRNQNGVSLAPFMALIHEN 129
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
IL W +L DAVL+GG+ F++VHG+ +EY G D RFN VFN AM N T++V +L+
Sbjct: 130 VILQSWSQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNMLEK 189
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
YNGF+ +KQLVD+GGGLG T+ +TS+YP I+G+NFDLPHVI++AP+Y GV+H+GG+MFE
Sbjct: 190 YNGFKNLKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDMFE 249
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+PKGDAI +KWILHNW D+HCL LLKNCY+AIPE+GK+I+++ + +T + + AA+ S
Sbjct: 250 SVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKAIS 309
Query: 321 MTDIIMLM-QFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++M+M Q GG+ERT EFMALA AGF G+ +E FVCNF ++EF K
Sbjct: 310 QLDVLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 274/370 (74%), Gaps = 12/370 (3%)
Query: 1 MDSSAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAG 60
M SSA+T + + +EE +EN + +AMQLA+ LP S+ AA ELGVFEIIAKAG
Sbjct: 1 MASSAET----RLHPIDEEHDEN----FGYAMQLALGSALPMSLHAAIELGVFEIIAKAG 52
Query: 61 PGAKLSAAQIAAQMPS-RNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119
P +KLSA++I A++P +NP+ + LDR+LRLL ++ VL CSL+ +RLYSL PV+K
Sbjct: 53 PESKLSASEITAEIPDVQNPDAAITLDRVLRLLASHNVLGCSLNGL---ERLYSLNPVSK 109
Query: 120 YFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFN 179
YFV NQDG+SL P +A+ D+ LD W KL DAVL+GG PFNK HG + Y+G DSRFN
Sbjct: 110 YFVPNQDGISLGPFMALIQDKVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFN 169
Query: 180 GVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP 239
VFN AM +HT++V+ +IL++Y GF+Q+KQL+DVGGGLG TL I S+YPH++G+NFDLP
Sbjct: 170 HVFNTAMFHHTNLVITKILETYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLP 229
Query: 240 HVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKI 299
HV++ AP+ GV+H+ G+MFE +PKG+AI MKWILH+W DEHCL LLKNCYEA+P++GK+
Sbjct: 230 HVVKYAPAIPGVEHVAGDMFESVPKGEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKV 289
Query: 300 IIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV 359
I++D + V PE AA+ TD++++ + GG ERT EF+A+A AGF G+ Y C
Sbjct: 290 IVMDAVLPVMPETGKAAKANFQTDLVVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCA 349
Query: 360 CNFCIIEFIK 369
CNF I+EF K
Sbjct: 350 CNFWIMEFFK 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 278/377 (73%), Gaps = 8/377 (2%)
Query: 1 MDSSAKTQHKHKHNEEEEEEEENEED---TYSFAMQLAMSIVLPASMQAAAELGVFEIIA 57
MDSS + + K N E E+E +E+ ++ +AMQL S L S+Q+A +LGVF+IIA
Sbjct: 1 MDSSLERKSHPKINHAEPEDEITKEEEEESFCYAMQLVGSSALSMSLQSAIKLGVFDIIA 60
Query: 58 KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA---GDNQRLYSL 114
+ GP AKLS++ IAA++ ++NP +M+DRILRLL ++ VL CS +A D QR+YSL
Sbjct: 61 REGPDAKLSSSGIAAKIGTKNPEAPMMVDRILRLLTSHSVLNCSAVAANGGSDFQRVYSL 120
Query: 115 APVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGN 174
PV+KYFV +++G SL P + + D+ ++ W +L DAV++GGIPFN+VHGM +EY G
Sbjct: 121 GPVSKYFVSDEEGGSLGPSMTLIQDKVFMESWSQLKDAVVEGGIPFNRVHGMHAFEYPGL 180
Query: 175 DSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQ--IKQLVDVGGGLGVTLNIITSRYPHIE 232
D RFN VFN AM NHT+IV+ ++L Y G E + QLVDVGGGLGVTLN+ITSRY HI+
Sbjct: 181 DPRFNQVFNTAMFNHTTIVIKKLLHIYKGLEDKNLTQLVDVGGGLGVTLNLITSRYQHIK 240
Query: 233 GVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEA 292
G+NFDLPHV+ +APSY GV+H+GG+MF +P GDAI MKWILH+W DEHCL LLKNCY+A
Sbjct: 241 GINFDLPHVVNHAPSYPGVEHVGGDMFASVPSGDAIFMKWILHDWSDEHCLKLLKNCYKA 300
Query: 293 IPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNG 352
IP+NGK+I+++ + PE + A + S D++M+ Q GG+ER+ QEFMALA AGF+G
Sbjct: 301 IPDNGKVIVVEALLPAMPETSTATKTTSQLDVVMMTQNPGGKERSEQEFMALATGAGFSG 360
Query: 353 VNYECFVCNFCIIEFIK 369
+ YECFVCNF ++EF K
Sbjct: 361 IRYECFVCNFWVMEFFK 377
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512657|ref|XP_003626617.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240860|gb|ABD32718.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501632|gb|AES82835.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/356 (55%), Positives = 271/356 (76%), Gaps = 4/356 (1%)
Query: 18 EEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR 77
E++E +E+++S+A+QL+ SIVL ++Q+A ELGVFE++ KAG LS+ +IA+++
Sbjct: 7 EKQELEDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCT 66
Query: 78 NPNTGVMLDRILRLLVTNRVLRCSLS----SAGDNQRLYSLAPVAKYFVLNQDGVSLCPL 133
NP+ MLDRIL LL ++ VL CS+ + G RLY++ VAK+F N DGVSL PL
Sbjct: 67 NPDAPKMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPL 126
Query: 134 LAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIV 193
+A+ D+ L W +L DA+ +GGIPFN+V+G +EYA DSRFN VFN AM+NHT+IV
Sbjct: 127 IALHQDKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIV 186
Query: 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKH 253
MN++L SY GFE +K+LVDVGGGLGV +N+ITS++PHI G+NFDLPHVIQ+APSY GV+H
Sbjct: 187 MNKVLQSYKGFEDVKRLVDVGGGLGVNINLITSKHPHIHGINFDLPHVIQHAPSYPGVEH 246
Query: 254 IGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT 313
+GG+MFE +PK DAI MKWILH+W DE CL LLKNCY+AIP++GK+I+++ + + PE
Sbjct: 247 VGGDMFETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAVLSIIPENN 306
Query: 314 AAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
AA + A+ +D++M+ Q GG+ERT QEFM LAN AGF+G+ YEC+V F ++EF K
Sbjct: 307 AAWKFAAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVMEFFK 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388494808|gb|AFK35470.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/356 (55%), Positives = 271/356 (76%), Gaps = 4/356 (1%)
Query: 18 EEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR 77
E++E +E+++S+A+QL+ SIVL ++Q+A ELGVFE++ KAG LS+ +IA+++
Sbjct: 7 EKQELEDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCT 66
Query: 78 NPNTGVMLDRILRLLVTNRVLRCSLS----SAGDNQRLYSLAPVAKYFVLNQDGVSLCPL 133
NP+ MLDRIL LL ++ VL CS+ + G RLY++ VAK+F N DGVSL PL
Sbjct: 67 NPDAPKMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPL 126
Query: 134 LAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIV 193
+A+ D+ L W +L DA+ +GGIPFN+V+G +EYA DSRFN VFN AM+NHT+IV
Sbjct: 127 IALHQDKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIV 186
Query: 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKH 253
MN++L SY GFE +K+LVDVGGGLGV +N+ITS++PHI G+NFDLPHVIQ+APSY GV+H
Sbjct: 187 MNKVLQSYKGFEDVKRLVDVGGGLGVNVNLITSKHPHIHGINFDLPHVIQHAPSYPGVEH 246
Query: 254 IGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT 313
+GG+MFE +PK DAI MKWILH+W DE CL LLKNCY+AIP++GK+I+++ + + PE
Sbjct: 247 VGGDMFETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAVLSIIPENN 306
Query: 314 AAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
AA + A+ +D++M+ Q GG+ERT QEFM LAN AGF+G+ YEC+V F ++EF K
Sbjct: 307 AAWKFAAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVMEFFK 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 191/349 (54%), Positives = 263/349 (75%), Gaps = 2/349 (0%)
Query: 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG 82
N E+++S+A+Q+ S VLP SM AA +L +F I+AK GP AKLSA +IAAQ+ + N
Sbjct: 8 NNEESFSYALQIVTSSVLPMSMHAAVQLDIFGIMAKCGPDAKLSAKEIAAQLATNNSEAA 67
Query: 83 VMLDRILRLLVTNRVLRCSL--SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
MLDRIL LL ++ ++ CS+ G+ ++LYSL PV+K+FV N+DGVSL PL+A+ D+
Sbjct: 68 SMLDRILLLLASHGIVGCSVVDEEKGNPRKLYSLTPVSKFFVRNEDGVSLGPLMALLQDK 127
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+D W +L DA+++GG+PF++VHG +EY G D RFN +FN AM+NHTS+V+ IL +
Sbjct: 128 VFIDSWSQLKDAIIEGGVPFDRVHGSNTFEYPGKDPRFNQIFNTAMINHTSLVLKEILHN 187
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GF+Q+ LVDVGGGLG+TLN+ITS+YP I+G+NFDLPHVIQ+AP+Y GV+H+G +MFE
Sbjct: 188 YKGFQQLSSLVDVGGGLGITLNLITSKYPSIKGINFDLPHVIQHAPAYPGVQHVGRDMFE 247
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+PKG AI MKWILH+W +HCL LLKNCY AIP++GK+I+++ + PEA A R +
Sbjct: 248 SVPKGAAIFMKWILHDWSGDHCLKLLKNCYNAIPKDGKVIVVEAVVPDVPEANAYLRSIT 307
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++ML Q GG+ERT EF ALA +AGF+G+ YECF C++ I+EF K
Sbjct: 308 QVDMVMLAQDPGGKERTKSEFEALATKAGFSGIRYECFACSYWIMEFFK 356
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|342161927|sp|A9X7L0.1|ANMT_RUTGR RecName: Full=Anthranilate N-methyltransferase; Short=RgANMT gi|115315700|gb|ABI93949.1| anthranilate N-methyltransferase [Ruta graveolens] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 281/367 (76%), Gaps = 7/367 (1%)
Query: 3 SSAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPG 62
S + TQ+KH E EE+EE++YS AMQL+M+IVLP + Q+A +LGVFEIIAKA PG
Sbjct: 5 SESHTQYKHG-----VEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKA-PG 58
Query: 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122
+LSA++IA + ++NP VMLDR+LRLLV++RVL CS+S +RLY L V+KYFV
Sbjct: 59 GRLSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPA-GERLYGLTSVSKYFV 117
Query: 123 LNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVF 182
+QDG SL +A+ D+ ++ W + AV++GGIPFN+VHGM ++EYA ++S+F+ +
Sbjct: 118 PDQDGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTY 177
Query: 183 NKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVI 242
++AM NH++I + RIL+ Y GFE + +LVDVGGGLGVTL++I S+YPHI+ +NFDLPHV+
Sbjct: 178 HRAMFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVV 237
Query: 243 QNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302
Q+A SY GV+H+GGNMFE +P+GDAILMKWILH WDDE CL +LKNCY+A PENGK+I++
Sbjct: 238 QDAASYPGVEHVGGNMFESVPEGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVM 297
Query: 303 DRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNF 362
+ + TPE +++ARE S+ D++++ + GGRERT +EF LA AGF G+N+ C VCN
Sbjct: 298 NSVVPETPEVSSSARETSLLDVLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNL 357
Query: 363 CIIEFIK 369
I+EF K
Sbjct: 358 HIMEFFK 364
|
Source: Ruta graveolens Species: Ruta graveolens Genus: Ruta Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/339 (56%), Positives = 261/339 (76%), Gaps = 4/339 (1%)
Query: 32 MQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRL 91
MQLA+S VLP ++ A +LG+FEIIAKAGP KLSAA IAA++P+ NP+T MLDRILRL
Sbjct: 1 MQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRL 60
Query: 92 LVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLAD 151
L +++VL C + + +R YSLAPV+ YFV NQ+GVSL P +A+ + +L W +L D
Sbjct: 61 LASHQVLCCFVDGS---ERFYSLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWSQLKD 117
Query: 152 AVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLV 211
AVL+GG+ F++VHG+ +EY G D +FN VFN AM N T++V +L+ YNGF+ +KQLV
Sbjct: 118 AVLEGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLV 177
Query: 212 DVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMK 271
D+GGGLG T+ ITS+YPHI+G+NFDLPHVI++AP+Y GV+H+GG+MFE +PKGDAI +K
Sbjct: 178 DIGGGLGHTMKAITSKYPHIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLK 237
Query: 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM-QF 330
WILHNW D+HCL LLKNCY+AIP +GK+I+++ + +T + + AA+ S D++M++ Q
Sbjct: 238 WILHNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQN 297
Query: 331 SGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
GG+ERT EFMALA AGF G+ +E FVCNF ++EF K
Sbjct: 298 PGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255647474|gb|ACU24201.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/357 (54%), Positives = 271/357 (75%), Gaps = 8/357 (2%)
Query: 19 EEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP-SR 77
E+E +E+++S AM L S+V+ ++Q+A ELGVF+++ +AG AKLSA +IA+++
Sbjct: 18 EQELEDEESFSRAMLLCSSVVVSMALQSATELGVFDVLQEAG--AKLSAKEIASKLSCDN 75
Query: 78 NPNTGVMLDRILRLLVTNRVLRCSL----SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPL 133
NP MLDR+L LL ++ +L CSL + G QRLY++ PVA++F N DGVSL PL
Sbjct: 76 NPEADSMLDRLLALLASHSILNCSLILDHQNLGTFQRLYTITPVARFFARNSDGVSLGPL 135
Query: 134 LAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIV 193
+A+ D+ L W +L D++ +GGIPFN+V+G +EY D+RFN VFN AM+NHT+IV
Sbjct: 136 MALLQDKIFLHSWSELKDSIREGGIPFNRVYGTHAFEYPRLDARFNQVFNTAMINHTTIV 195
Query: 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKH 253
M ++L+ Y GFE IK LVDVGGGLG+ +N+ITS+YPHI+G+NFDLPHV+++APSY GV+H
Sbjct: 196 MKKVLECYKGFENIKMLVDVGGGLGININLITSKYPHIQGINFDLPHVLEHAPSYPGVEH 255
Query: 254 IGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT 313
+GG+MFE +PKGDAI MKWILH+W DE+CL LLKNCY+AIP++GK+I+++ + + PE +
Sbjct: 256 VGGDMFENVPKGDAIFMKWILHDWSDEYCLKLLKNCYDAIPDDGKVIVVEAVLPIIPETS 315
Query: 314 AAAREA-SMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
AA +A S TD++M+ Q SGG+ER+ QEFM LA AGF+G+ YEC+V F I+EF K
Sbjct: 316 NAAWKAVSQTDVLMMTQNSGGKERSDQEFMDLATAAGFSGIRYECYVRTFWIMEFFK 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 369 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.915 | 0.931 | 0.473 | 1.4e-87 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.918 | 0.941 | 0.463 | 4.5e-82 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.913 | 0.915 | 0.458 | 2.2e-80 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.910 | 0.881 | 0.403 | 9.9e-71 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.918 | 0.889 | 0.395 | 1.1e-69 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.915 | 0.960 | 0.393 | 3.1e-67 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.867 | 0.881 | 0.406 | 2.5e-65 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.910 | 0.888 | 0.402 | 3.3e-63 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.905 | 0.895 | 0.382 | 1.8e-62 | |
| TAIR|locus:2199597 | 373 | IGMT3 "indole glucosinolate O- | 0.905 | 0.895 | 0.38 | 6.2e-62 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 162/342 (47%), Positives = 231/342 (67%)
Query: 30 FAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRIL 89
FAMQLA + VLP ++++A EL + EI+AK G + +S +IA+++P++NP VMLDRIL
Sbjct: 22 FAMQLASASVLPMALKSALELDLLEIMAKNG--SPMSPTEIASKLPTKNPEAPVMLDRIL 79
Query: 90 RLLVTNRVLRCSLSS-AGDN-QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWY 147
RLL + VL CS +GD +R+Y L PV KY N+DGVS+ L M D+ +++ WY
Sbjct: 80 RLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWY 139
Query: 148 KLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQI 207
L DA+L GGIPFNK +GM +EY G D RFN VFN M NH++I M +IL++Y GFE +
Sbjct: 140 HLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGL 199
Query: 208 KQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDA 267
+I S+YP+++G+NFDLPHVI++APS+ G++H+GG+MF +PKGDA
Sbjct: 200 TSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDA 259
Query: 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIML 327
I MKWI H+W DEHC+ LKNCYE++PE+GK+I+ + + TP+++ + ++ D IML
Sbjct: 260 IFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDCIML 319
Query: 328 MQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
GG+ERT +EF ALA +GF G+ C +IE +K
Sbjct: 320 AHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLIELLK 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 159/343 (46%), Positives = 218/343 (63%)
Query: 30 FAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR-NPNTGVMLDRI 88
+A+QL S +LP +++ A ELG+ E + AG G L+ A++AA++PS NP M+DR+
Sbjct: 19 YALQLVSSSILPMTLKNAIELGLLETLVAAG-GKLLTPAEVAAKLPSTANPAAADMVDRM 77
Query: 89 LRLLVTNRVLRCSLSSAGDNQ--RLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIW 146
LRLL + V+ C++ D + R Y APV K+ N+DGVS+ L M D+ +++ W
Sbjct: 78 LRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW 137
Query: 147 YKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQ 206
Y L DAVL GGIPFNK +GM +EY G D RFN VFN+ M NH+ I+ ++L+ Y GFE
Sbjct: 138 YYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEG 197
Query: 207 IKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGD 266
+ IT+ YP I+G+NFDLPHVI A + GV H+GG+MF+++P GD
Sbjct: 198 LGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGVTHVGGDMFQKVPSGD 257
Query: 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM 326
AILMKWILH+W DEHC TLLKNCY+A+P +GK+++++ + V PEAT A+ D+IM
Sbjct: 258 AILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVFHVDMIM 317
Query: 327 LMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
L GGRER +EF ALA AGF + N IEF K
Sbjct: 318 LAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 162/353 (45%), Positives = 224/353 (63%)
Query: 30 FAMQLAMSIVLPASMQAAAELGVFEII---AKAGPGAK---LSAAQIAAQMPSR-NPNTG 82
+A+QLA S +LP +++ A ELG+ E + A AG G K L+ A++A ++PS+ NP
Sbjct: 19 YALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAA 78
Query: 83 VMLDRILRLLVTNRVLRCSLSSAGDNQ--RLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
M+DR+LRLL + V+RC + D + R Y+ APV K+ N+DGVS+ L M D+
Sbjct: 79 DMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDK 138
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+++ WY L DAVL GGIPFNK +GM +EY G D+RFN VFN+ M NH+ I+ ++LD
Sbjct: 139 VLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDL 198
Query: 201 YNGFEQIKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GF+ + SR+PHI G+N+DLPHVI AP + GV+H+GG+MF
Sbjct: 199 YTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGVEHVGGDMFA 258
Query: 261 RIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT-AAARE 318
+P+G DAILMKWILH+W DEHC LLKNCY+A+PE+GK+++++ V PE++ A ARE
Sbjct: 259 SVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVE---CVLPESSDATARE 315
Query: 319 ASM--TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
+ D+IML GG+ER +EF LA AGF G N IEF K
Sbjct: 316 QGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 142/352 (40%), Positives = 210/352 (59%)
Query: 31 AMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR--NPNTGVMLDRI 88
A + ++ P ++AA ELGV + IA AG LS +IA +P++ NP V+LDR+
Sbjct: 33 AESIVNTVAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKPTNPEAPVLLDRM 92
Query: 89 LRLLVTNRVLRCSLSSAGDN------QRLYSLAPVAKYFVLNQDGV-SLCPLLAMAGDQA 141
L LLV++ +L+C + G+N +R+Y+ PV KYF+ + DG SL PL + Q
Sbjct: 93 LSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQV 152
Query: 142 ILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSY 201
W L D +L+G FN HGM ++EY +D F +FN+AM ++++M ++LD Y
Sbjct: 153 FFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVY 212
Query: 202 NGFEQIKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER 261
GFE + ++TS+YPHI+GVNFDL V+ AP Y GV+H+ G+MF
Sbjct: 213 RGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVE 272
Query: 262 IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321
+PKGDA+ MKWILH+W DE C+ +LKNC++++PE GKIII++ VTP+ +S
Sbjct: 273 VPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVE---FVTPKEPKGGDLSSN 329
Query: 322 T----DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
T D++ML Q SGG+ER+ +F LA +GF C ++ +IEF K
Sbjct: 330 TVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSVIEFHK 381
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 138/349 (39%), Positives = 214/349 (61%)
Query: 31 AMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR--NPNTGVMLDRI 88
A + ++ P ++AA ELGV + IA A G LS ++IA +P++ NP V+LDR+
Sbjct: 33 AESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRM 92
Query: 89 LRLLVTNRVLRCSLSSAGDN------QRLYSLAPVAKYFVLNQDGV-SLCPLLAMAGDQA 141
LRLLV++ +L+C + + +N +R+Y+ P+ KYF+ + DG SL LL + Q
Sbjct: 93 LRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQV 152
Query: 142 ILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSY 201
IL W L D +L+G F+ H M ++EY +D +F+ +F++AM +++VM ++L+ Y
Sbjct: 153 ILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEY 212
Query: 202 NGFEQIKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER 261
GFE + +ITS+YPHI+GVNFDL V+ AP Y GVKH+ G+MF
Sbjct: 213 RGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIE 272
Query: 262 IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321
+PKGDAI MKWILH+W DE C+ +LKNC++++PE GK+II++ + + P+ + +
Sbjct: 273 VPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFSCNTVL 332
Query: 322 -TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++ML Q SGG+ER+ +F LA +GF C ++ +IEF K
Sbjct: 333 GMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSVIEFHK 381
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 136/346 (39%), Positives = 209/346 (60%)
Query: 29 SFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPS--RNPNTGVMLD 86
S+AM L+ S VLP ++ A +LG+F+I+A++GP SA+QI + + + + + +++
Sbjct: 8 SYAMILSSSSVLPMVLKTAIDLGLFDILAESGPS---SASQIFSLLSNETKKHHDSSLVN 64
Query: 87 RILRLLVTNRVLRCSLSSA-GDNQRLYSLAPVAKYFVLNQDGV-SLCPLLAMAGDQAILD 144
RILR L + +L CS+S+ G+ +Y LAPVAKYF NQ+G SL P++ + D+ + D
Sbjct: 65 RILRFLASYSILTCSVSTEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTD 124
Query: 145 IWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGF 204
+WY L D+VL+GG+PFN HG E G+DSRF VF +M + + L +YNGF
Sbjct: 125 MWYNLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGF 184
Query: 205 EQIKQXXXXXXXXXXXXNIITSRYPHI-EGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP 263
+ +K + I S++ HI + +NFDLP VI + G++H+ G+MF P
Sbjct: 185 DGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAGDMFTNTP 244
Query: 264 KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTD 323
KG+AI MKW+LH+WDD+HC+ +L NCY+++P NGK+I++D + P T R +
Sbjct: 245 KGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLFQFE 304
Query: 324 IIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
+ M+ G+ERT +EF LA AGF+ V F ++EF K
Sbjct: 305 LFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTSLCFSVLEFHK 350
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 132/325 (40%), Positives = 196/325 (60%)
Query: 31 AMQLAMSIVLPASMQAAAELGVFEIIAKAGP-GAKLSAAQIAAQMPSRNPNTGVMLDRIL 89
A+QL +P ++ A EL +FEI+AKA P G+ LS +A+ +NP+ +M+DR+L
Sbjct: 19 AIQLGGLNFVPYIVKTARELDLFEIMAKARPLGSYLSPVDLASMAAPKNPHAPMMIDRLL 78
Query: 90 RLLVTNRVLRCSL--SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWY 147
R LV V C L G R Y L V K + ++DG S+ P + +A +W
Sbjct: 79 RFLVAYSVCTCKLVKDEEGRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWS 138
Query: 148 KLADAVLQGGIP-FNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQ 206
L +A+ +GG + + + ++EY + +FN++M NHTSIVM +IL++Y GFE
Sbjct: 139 YLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILENYIGFEG 198
Query: 207 IKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGD 266
+ I S+YPHI+G+NFDLPH+++ AP GV+HIGG+MF+ IP+G+
Sbjct: 199 VSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGE 258
Query: 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM-PMVTPEATAAAREASMTDII 325
ILMKWILH+W+DE C+ +LKNC +A+PE G+II+I+ + P E A + + D+
Sbjct: 259 VILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPREVSETDLATKNSLSADLT 318
Query: 326 MLMQFSGGRERTTQEFMALANEAGF 350
M+ SGG+ERT +EF LA EAGF
Sbjct: 319 MMSLTSGGKERTKKEFEDLAKEAGF 343
|
|
| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 142/353 (40%), Positives = 204/353 (57%)
Query: 31 AMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAK-LSAAQIAAQMPSR--NPNTGVMLDR 87
A +LA + P ++AA ELGV + I G G LS ++IA ++P++ N +LDR
Sbjct: 29 ARRLANAAASPMVLKAALELGVIDTITTVGGGDLWLSPSEIALRLPTKPCNLEAPALLDR 88
Query: 88 ILRLLVTNRVLRCSL-----SSAGDNQRLYSLAPVAKYFVLNQDGVS--LCPLLAMAGDQ 140
+LR LV++ VL+C G +R+Y+ PV KY + D VS L +
Sbjct: 89 MLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVSGSFASLFMLDLSD 148
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
+ W L D +L+G F+ HGM ++EY D RF VFN+AML +++V ++L
Sbjct: 149 VFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLKF 208
Query: 201 YNGFEQIKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260
Y GF+ +K +ITS+YPH+ G+NFDL V+ NA SY GV H+ G+MF
Sbjct: 209 YEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVNHVAGDMFI 268
Query: 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTP-EATAAAREA 319
+IPKGDAI MKWILH+W DE C+ +LKNC++++ ENGK+II++ MVTP EA + +
Sbjct: 269 KIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVE---MVTPVEAKSGDICS 325
Query: 320 SMT---DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
++ D+ ML Q SGG+ER EF LA +GF+ C V F +IE K
Sbjct: 326 NIVFGMDMTMLTQCSGGKERDLYEFENLAYASGFSRCAIVCAVYPFSVIEIYK 378
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 134/350 (38%), Positives = 215/350 (61%)
Query: 31 AMQLAMSIVLPASMQAAAELGVFEII--AKAGPGAKLSAAQIAAQMPS--RNPNTGVMLD 86
A++LA + P ++AA ELGVF+ + A + + LS +IA+++P+ RNP V+LD
Sbjct: 29 AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNPEAPVLLD 88
Query: 87 RILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLN--QDGVSLCPLLAMAGDQAILD 144
R+LRLL + +++C + +G +R+Y P+ ++F+ + QD SL + + D L+
Sbjct: 89 RMLRLLASYSMVKCGKALSGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFLN 148
Query: 145 IWYKLADAVLQGGIPFNKVHG-MGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNG 203
W +L D VL+GG F + HG M +++Y G D RF+ +FN+ T V+ + L+ Y G
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVVKKALEVYEG 206
Query: 204 FEQIKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP 263
F+ +K ++TS+YP+I+G+NFDL + APSY GV+H+ G+MF +P
Sbjct: 207 FKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDVP 266
Query: 264 KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTP-EATAAAREASMT 322
GDA+++K ILH+W DE C+ +LKNC++++PENGK+++I+ +VTP EA A++
Sbjct: 267 TGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIE---LVTPDEAENGDINANIA 323
Query: 323 ---DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++M Q SGG+ER+ EF ALA +GF + C + IIEF K
Sbjct: 324 FDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 133/350 (38%), Positives = 216/350 (61%)
Query: 31 AMQLAMSIVLPASMQAAAELGVFEII-AKAG-PGAKLSAAQIAAQMPS--RNPNTGVMLD 86
A++LA + P ++A+ ELGVF+ + A+A + LS ++IA+++P+ RNP V+LD
Sbjct: 29 AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNPGAPVLLD 88
Query: 87 RILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLN--QDGVSLCPLLAMAGDQAILD 144
R+LRLL + +++C S G QR+Y P+ ++F+ N QD SL + + D L+
Sbjct: 89 RMLRLLASYSMVKCEKVSVGKEQRVYRAEPICRFFLKNNIQDIGSLASQVIVNFDSVFLN 148
Query: 145 IWYKLADAVLQGGIPFNKVHG-MGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNG 203
W +L D VL+GG F + HG M +++Y G D RF+ +FN+ T V+ + L+ Y G
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVVKKALEVYQG 206
Query: 204 FEQIKQXXXXXXXXXXXXNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP 263
F+ + ++TS+YP+I+G+NFDL + AP+Y GV+H+ G+MF +P
Sbjct: 207 FKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYPGVEHVAGDMFVDVP 266
Query: 264 KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTP-EATAAAREASMT 322
G+A+++K ILH+W DE C+ +LKNC++++P+NGK+++I+ +VTP EA A++
Sbjct: 267 TGNAMILKRILHDWTDEDCVKILKNCWKSLPQNGKVVVIE---LVTPDEAENGDINANIA 323
Query: 323 ---DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
D++M Q SGG+ER+ EF ALA +GF+ + C + IIEF K
Sbjct: 324 FDMDMLMFTQCSGGKERSRAEFEALAAASGFSHCQFVCQAYHCWIIEFCK 373
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42653 | OMT2_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5058 | 0.9132 | 0.9825 | N/A | no |
| Q9XGV9 | COMT2_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5157 | 0.9403 | 0.9612 | N/A | no |
| Q9FQY8 | COMT1_CAPAN | 2, ., 1, ., 1, ., 6, 8 | 0.52 | 0.9430 | 0.9693 | N/A | no |
| Q43609 | COMT1_PRUDU | 2, ., 1, ., 1, ., 6, 8 | 0.5300 | 0.9403 | 0.9506 | N/A | no |
| P46484 | COMT1_EUCGU | 2, ., 1, ., 1, ., 6, 8 | 0.5042 | 0.9403 | 0.9480 | N/A | no |
| Q00763 | COMT1_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.5243 | 0.9403 | 0.9506 | N/A | no |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.4702 | 0.9132 | 0.9157 | yes | no |
| Q43046 | COMT1_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5243 | 0.9403 | 0.9506 | N/A | no |
| A9X7L0 | ANMT_RUTGR | 2, ., 1, ., 1, ., 1, 1, 1 | 0.5531 | 0.9756 | 0.9890 | N/A | no |
| O23760 | COMT1_CLABR | 2, ., 1, ., 1, ., 6, 8 | 0.5013 | 0.9701 | 0.9675 | N/A | no |
| P59049 | OMT1_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5058 | 0.9132 | 0.9825 | N/A | no |
| Q6T1F5 | COMT1_AMMMJ | 2, ., 1, ., 1, ., 6, 8 | 0.52 | 0.9430 | 0.9534 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.4928 | 0.9349 | 0.9504 | yes | no |
| Q9SWC2 | COMT1_EUCGL | 2, ., 1, ., 1, ., 6, 8 | 0.5354 | 0.8346 | 0.9840 | N/A | no |
| Q9XGW0 | COMT1_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5157 | 0.9403 | 0.9612 | N/A | no |
| O81646 | COMT1_CAPCH | 2, ., 1, ., 1, ., 6, 8 | 0.5114 | 0.9430 | 0.9693 | N/A | no |
| Q8W013 | COMT1_CATRO | 2, ., 1, ., 1, ., 6, 8 | 0.5135 | 0.9728 | 0.9889 | N/A | no |
| Q43239 | COMT1_ZINEL | 2, ., 1, ., 1, ., 6, 8 | 0.5014 | 0.9403 | 0.9802 | N/A | no |
| Q8GU25 | COMT1_ROSCH | 2, ., 1, ., 1, ., 6, 8 | 0.5157 | 0.9403 | 0.9506 | N/A | no |
| Q8LL87 | COMT1_COFCA | 2, ., 1, ., 1, ., 6, 8 | 0.5229 | 0.9376 | 0.9885 | N/A | no |
| P28002 | COMT1_MEDSA | 2, ., 1, ., 1, ., 6, 8 | 0.5229 | 0.9783 | 0.9890 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 369 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-111 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 1e-12 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 8e-12 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-111
Identities = 105/240 (43%), Positives = 145/240 (60%), Gaps = 2/240 (0%)
Query: 106 GDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHG 165
Y L P +K V +D SL PLL M D +L+ W L DAV +GG PF + G
Sbjct: 1 TRGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFG 60
Query: 166 MGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIIT 225
M +EY G D FN VFN+AM H+ +VM +IL++ F + LVDVGGG G I
Sbjct: 61 MPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIV 120
Query: 226 SRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTL 285
YPHI+G+ FDLPHVI +APS V+ +GG+ FE +P+ DAIL+KW+LH+W DE C+ +
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKI 180
Query: 286 LKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345
LK CYEA+P GK+I+++ + + E + D+ ML+ GG+ERT +E+ L
Sbjct: 181 LKRCYEALPPGGKVIVVEMV-LPEDPDDDLETEVLLLDLNMLVLN-GGKERTEKEWRKLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 1e-12
Identities = 48/273 (17%), Positives = 108/273 (39%), Gaps = 38/273 (13%)
Query: 44 MQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLS 103
M+AA EL +F +A+ P + A +P R L ++ ++
Sbjct: 7 MKAAIELDLFSHMAEG-PKDLATLAADTGSVPPRLEMLLETLRQMR--VINLE------- 56
Query: 104 SAGDNQRLYSLAPVAKYFVLNQD---GVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPF 160
+SL A Y + P+ D + L+ ++G F
Sbjct: 57 --DG---KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQ-AVRGQKNF 109
Query: 161 NKV--HGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLG 218
+ E D+ + +++ ++L + +K+++DVGGG+G
Sbjct: 110 KGQVPYPPVTRE----DNLYFEEIHRSNAK----FAIQLLLEEAKLDGVKKMIDVGGGIG 161
Query: 219 VTLNIITSRYPHIEGVNFDLPH---VIQNAPSYRG----VKHIGGNMF-ERIPKGDAILM 270
+ +P ++ +LP ++ + +G ++ I +++ E P+ DA+L
Sbjct: 162 DISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221
Query: 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303
IL++ +++ + K ++A+ G+++I+D
Sbjct: 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 8e-12
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 43 SMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLV 93
++ A ELG+ +IIAK G LS +++A+++P+ NP VMLDR+LRLL
Sbjct: 2 VLKCAIELGIPDIIAKHG--KPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.77 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.76 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.75 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.69 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.68 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.68 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.66 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.65 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.64 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.63 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.63 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.62 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.62 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.58 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.58 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.58 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.57 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.56 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.56 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.51 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.51 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.51 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.5 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.49 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.48 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.47 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.47 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.46 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.45 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.45 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.44 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.44 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.43 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.42 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.41 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.41 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.4 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.4 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.39 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.37 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.36 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.35 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.34 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.34 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.33 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.32 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.32 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.32 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.3 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.28 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.26 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.26 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.25 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.24 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.23 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.22 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.21 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.21 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.21 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.2 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.19 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.19 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.18 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.18 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.18 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.17 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.17 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.1 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.1 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.1 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.09 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.09 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.08 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.05 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.02 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.01 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.01 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.0 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.99 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.98 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.98 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.98 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.97 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.97 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.96 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.95 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.94 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.93 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.92 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.87 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.87 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.86 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.85 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.84 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.83 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.82 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.82 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.81 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.81 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.8 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.78 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.77 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.76 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.74 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.74 | |
| PLN02366 | 308 | spermidine synthase | 98.71 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.7 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.66 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.65 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.64 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.63 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.62 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.61 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.6 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.59 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.55 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.53 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.52 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.5 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.47 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.46 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.43 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.4 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.38 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.36 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.35 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.33 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.29 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.28 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.26 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.24 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.23 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.2 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.19 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.18 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.18 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.18 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.17 | |
| PLN02476 | 278 | O-methyltransferase | 98.17 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.16 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.16 | |
| PLN02823 | 336 | spermine synthase | 98.16 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.14 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.12 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.11 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.1 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.1 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.09 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.07 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.04 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.03 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.01 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.01 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.99 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.97 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.96 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.95 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.94 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.92 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.87 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.87 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.85 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.76 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.75 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.75 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.75 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.73 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.72 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.72 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.72 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.71 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.7 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.68 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.65 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.65 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.65 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.57 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.56 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.52 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.52 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.43 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.4 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.32 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.29 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.28 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.27 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 97.26 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.23 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.14 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.1 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.08 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.07 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.07 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.95 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.91 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.81 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.76 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.74 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.72 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.72 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.7 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.67 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.64 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.63 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.62 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.59 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.58 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.58 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.57 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.57 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.55 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.51 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.51 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.43 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.43 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.39 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.34 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.33 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.29 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.28 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.28 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.27 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.25 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.24 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.17 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.09 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.08 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.05 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.03 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 96.03 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 96.01 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.9 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.83 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 95.79 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.79 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.77 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.76 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.71 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.69 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.62 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.62 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 95.61 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.6 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 95.59 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.52 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.4 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.34 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 95.33 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.3 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.22 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.16 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.13 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 94.96 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.8 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 94.8 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.71 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 94.69 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.66 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 94.64 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 94.6 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 94.58 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.55 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 94.47 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 94.36 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 94.23 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.07 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.05 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.04 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.99 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 93.98 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 93.94 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 93.82 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 93.77 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 93.71 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.71 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 93.68 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 93.66 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.53 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.45 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 93.39 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 93.3 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.28 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 93.22 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 93.22 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 93.15 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 93.09 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 93.09 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.78 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.61 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 92.59 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 92.52 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 92.36 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 92.31 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 92.22 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 92.13 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.95 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 91.63 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 91.58 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 91.39 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.3 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 91.23 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 91.19 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 91.09 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 91.06 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 91.03 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 91.0 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 90.68 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.68 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 90.55 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 90.45 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 90.3 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 90.06 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 90.06 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 89.98 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 89.95 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 89.68 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 89.56 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 89.37 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 89.35 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 89.25 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 89.24 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 89.15 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 89.11 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 88.88 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 88.87 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 88.83 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 88.81 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 88.79 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 88.4 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.22 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 88.2 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 87.97 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.85 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 87.54 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 87.51 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 87.48 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 86.75 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.31 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 85.29 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 85.25 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 85.19 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 85.1 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 84.75 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 84.64 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 84.45 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 84.15 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 83.7 | |
| PRK05638 | 442 | threonine synthase; Validated | 83.24 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 83.11 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 82.87 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 82.8 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 82.78 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 82.37 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 82.1 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 81.83 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 81.66 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 81.58 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 81.28 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 81.19 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.13 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 81.1 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 80.87 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 80.49 | |
| COG3413 | 215 | Predicted DNA binding protein [General function pr | 80.25 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 80.03 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=334.46 Aligned_cols=338 Identities=44% Similarity=0.803 Sum_probs=302.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCC-CCCCCcccHHHHHHHHhcCcccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPS-RNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+++++.-.++++++++..++++++|+|||+||.|.+.+ + ..++|..+.. ++|..+.++.|+||.|++.+++.+.
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~ 76 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCR 76 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceee
Confidence 34567788999999999999999999999999999853 2 7888887774 4777899999999999999999874
Q ss_pred ccCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHH
Q 017595 102 LSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGV 181 (369)
Q Consensus 102 ~~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~ 181 (369)
... .. .|++++.++.++..++..++.+++...+.+...+.|..+.++++.+..+|...+|...++|...+......
T Consensus 77 ~~~---~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~ 152 (342)
T KOG3178|consen 77 LVG---GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKD 152 (342)
T ss_pred eec---ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHH
Confidence 211 12 89999999988877666788898888888889999999999999999999999997889999888888889
Q ss_pred HHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-CCceEEeCCCCC
Q 017595 182 FNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-RGVKHIGGNMFE 260 (369)
Q Consensus 182 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~rv~~~~~d~~~ 260 (369)
+++.|...+....+.+++.+.++++....+|||||.|..+..++..||+++++.+|+|.+++.+... +.|+.+.||+|+
T Consensus 153 ~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq 232 (342)
T KOG3178|consen 153 FNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQ 232 (342)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccc
Confidence 9999999999888899998888888999999999999999999999999999999999999999988 899999999999
Q ss_pred CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV-TPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 261 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
+.|.+|+|++.++||||+|++|+++|++|++.|+|||++++.|.+.++ .............+|+.|+....+|++|+.+
T Consensus 233 ~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~ 312 (342)
T KOG3178|consen 233 DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLK 312 (342)
T ss_pred cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHH
Confidence 999999999999999999999999999999999999999999998875 3222223445678899999888789999999
Q ss_pred HHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
||+.++.++||.+..+...+..+++|+++|
T Consensus 313 e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 313 EFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999987
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=293.21 Aligned_cols=237 Identities=30% Similarity=0.592 Sum_probs=208.0
Q ss_pred CCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHH
Q 017595 108 NQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAML 187 (369)
Q Consensus 108 ~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~ 187 (369)
++++|++|+.++.++.+.+..++..++.+...+.++..|.+|.+++++|.++|+..+|.++|+|++++++..+.|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 47899999999999988876678887777677889999999999999999999999998899999999999999999999
Q ss_pred hhhhHhH-HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCC
Q 017595 188 NHTSIVM-NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGD 266 (369)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D 266 (369)
..+.... ..+...++ +++..+|||||||+|.++.++++++|+++++++|+|.+++.+++.+||++++|||++++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9888777 77788787 999999999999999999999999999999999999999988888999999999999898899
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCC--CEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPEN--GKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
+|++++|||+|+|+++.++|++++++|+|| |+|+|+|.+.++.............+|+.|++.+ +|+.||.+||++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 999999999999999999999999999999 9999999999887655443333468899999887 7999999999999
Q ss_pred HH
Q 017595 345 AN 346 (369)
Q Consensus 345 l~ 346 (369)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 84
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=294.02 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=212.2
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
-..+|++|+++||||+|.+ +|.|+++||+++|+ +++.+.|+|++|+++|++++. +++|++|+.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~-------~~~y~~t~~~~ 67 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-------DGKWSLTEFAD 67 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec-------CCcEecchhHH
Confidence 3578999999999999987 59999999999999 999999999999999999973 58999999999
Q ss_pred hhhcCCCCC---ChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHH-hhhhHhHH
Q 017595 120 YFVLNQDGV---SLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAML-NHTSIVMN 195 (369)
Q Consensus 120 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~-~~~~~~~~ 195 (369)
.++.+.+.. ++.++..+.. ......|.+|.+++++ .++|...++ +....+.. ..|...|. .......+
T Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~ 139 (306)
T TIGR02716 68 YMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQ 139 (306)
T ss_pred hhccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHH
Confidence 777655431 1223333221 1223568899999984 344433221 11112222 23333343 33334455
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCCCE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKGDA 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~ 267 (369)
.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|.+|+
T Consensus 140 ~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~ 218 (306)
T TIGR02716 140 LLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 218 (306)
T ss_pred HHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCE
Confidence 6666665 77888999999999999999999999999999999888876643 2689999999997 6777799
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh--hcCCccCCHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ--FSGGRERTTQEFMALA 345 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~t~~e~~~ll 345 (369)
|++++++|+|+++.+.++|++++++|+|||+++|.|.+.++...+. .. ...+..+... ..-...++.++|.++|
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN-FD---YLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch-hh---HHHHHHHHcccccccccCCCHHHHHHHH
Confidence 9999999999999899999999999999999999999876543221 11 1111111000 0011234589999999
Q ss_pred HHcCCcceeEE
Q 017595 346 NEAGFNGVNYE 356 (369)
Q Consensus 346 ~~aGf~~~~~~ 356 (369)
+++||+.++++
T Consensus 295 ~~aGf~~v~~~ 305 (306)
T TIGR02716 295 ESLGYKDVTMV 305 (306)
T ss_pred HHcCCCeeEec
Confidence 99999988764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=147.02 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=120.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC--CEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG--DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~v~~~~vl 274 (369)
..+.+|||||||||.++..+++..++.+++++|. +.+++.+++. ..++++.+|+.. |+|.. |+|++++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 9999988764 238999999999 99975 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH-HHHhh----c------------CCccCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII-MLMQF----S------------GGRERT 337 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~----~------------~~~~~t 337 (369)
++++| ..++|++++|+|||||++++.|...+..+.... ....+.+. .+-.. . .-...+
T Consensus 130 rnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~ 204 (238)
T COG2226 130 RNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD 204 (238)
T ss_pred hcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence 99964 568999999999999999999998876543321 11111111 11111 0 113358
Q ss_pred HHHHHHHHHHcCCcceeEEEecCcee
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFC 363 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 363 (369)
.+++.++++++||+.+.......+..
T Consensus 205 ~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 205 QEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred HHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 99999999999999998766665443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=154.62 Aligned_cols=164 Identities=14% Similarity=0.199 Sum_probs=120.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCCCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKGDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~v~~~~v 273 (369)
....+|||||||+|.++..++++ +|+.+++++|+ +.+++.+++. .+++++.+|+.+ +++..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35679999999999999999987 47899999999 8888877542 478999999988 6666799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHH-Hhh-hhh-----h---hH--HHHHhhcCCccCCHHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAA-ARE-ASM-----T---DI--IMLMQFSGGRERTTQEF 341 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-~~~-~~~-----~---d~--~~~~~~~~~~~~t~~e~ 341 (369)
+|++++++...+|++++++|+|||++++.|.+.+++...... ... ... . .+ ........-+..|.+++
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETH 211 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHH
Confidence 999988888899999999999999999999877554321110 000 000 0 00 00000012245699999
Q ss_pred HHHHHHcCCcceeEEEecCceeEEEEe
Q 017595 342 MALANEAGFNGVNYECFVCNFCIIEFI 368 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 368 (369)
.+++++|||+.+++......+.+..++
T Consensus 212 ~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 212 KARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 999999999988765555544444443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=146.80 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=116.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC---------CCCceEEeCCCCC-CCCCC--CEEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS---------YRGVKHIGGNMFE-RIPKG--DAIL 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p~~--D~v~ 269 (369)
.....+|||||||+|.++..+++.+ |+.+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4566899999999999999998875 6789999999 888887643 2479999999988 77754 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH---HHHhhc-----------CCcc
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII---MLMQFS-----------GGRE 335 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~~~~-----------~~~~ 335 (369)
+.+++|++++ ..++|++++++|||||++++.|...+......... ....... ...... -...
T Consensus 151 ~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999964 56899999999999999999999865532111110 0001000 000000 0234
Q ss_pred CCHHHHHHHHHHcCCcceeEEEecCceeE
Q 017595 336 RTTQEFMALANEAGFNGVNYECFVCNFCI 364 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 364 (369)
.+.+++.++++++||+.++......+.+.
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~ 255 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMG 255 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeE
Confidence 69999999999999999998887755443
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=154.03 Aligned_cols=154 Identities=14% Similarity=0.211 Sum_probs=114.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCCCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKGDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~v~~~~v 273 (369)
....+|||||||+|..+..+++. +|+.+++++|. +.+++.+++. .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 35689999999999999999884 68999999999 8888877542 479999999987 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH------------HHHhhcC-CccCCHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII------------MLMQFSG-GRERTTQE 340 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~------------~~~~~~~-~~~~t~~e 340 (369)
+|++++++...++++++++|+|||.+++.|.+.......... ....+.++. +.....+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988888899999999999999999999876554322110 000111110 0000001 22358999
Q ss_pred HHHHHHHcCCcceeEEEec
Q 017595 341 FMALANEAGFNGVNYECFV 359 (369)
Q Consensus 341 ~~~ll~~aGf~~~~~~~~~ 359 (369)
..++|++|||+.+++....
T Consensus 214 ~~~~L~~aGF~~v~~~~~~ 232 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQC 232 (247)
T ss_pred HHHHHHHcCchhHHHHHHH
Confidence 9999999999987765433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-19 Score=154.34 Aligned_cols=161 Identities=22% Similarity=0.345 Sum_probs=81.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~v~~~~ 272 (369)
.....+|||||||+|.++..++++. |+.+++++|. +.+++.+++. .+|+++.+|+.+ |++.. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4566899999999999999999884 6789999999 9999887642 589999999998 88765 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH--HH-hhcC------------CccCC
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM--LM-QFSG------------GRERT 337 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~-~~~~------------~~~~t 337 (369)
.||+++| ..+.|++++|+|||||+++|+|...+..+.... .+...+...+ .. ...+ ....+
T Consensus 125 glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~--~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRA--LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH--HHHH--------------------------------
T ss_pred hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc--eeeeeecccccccccccccccccccccccccccccc
Confidence 9999966 457999999999999999999998776421111 1111111000 00 0001 11237
Q ss_pred HHHHHHHHHHcCCcceeEEEecCcee-EEEEe
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFC-IIEFI 368 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~-vi~~~ 368 (369)
.+++.++++++||+.++..+...+.+ +..++
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccC
Confidence 89999999999999999887775543 44443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-17 Score=142.99 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=122.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 265 (369)
.++..++ .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4445554 5567899999999999999999885 6789999999 788766543 2579999999987 66543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH---------------h
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM---------------Q 329 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---------------~ 329 (369)
|+|++..++|++++ ..++|+++.+.|+|||++++.+...+.... ........+...+-. .
T Consensus 115 fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 115 FDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred ccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 99999999999855 468999999999999999999876543211 100000000000000 0
Q ss_pred hcCCccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEEeC
Q 017595 330 FSGGRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEFIK 369 (369)
Q Consensus 330 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 369 (369)
.......+.+++.++|+++||+.+++.... +...++.++|
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 001223578999999999999999998887 6677888776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=145.79 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=119.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG-- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-- 265 (369)
...+++.+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ .+++.++.+|+.+ +++.+
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 346666665 6778899999999999999998765 679999999 777766553 3579999999987 67653
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..+++|++.++...+|++++++|||||++++.+........ +.... .. ... .......+.+++.+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~---~~--~~~-~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEF---KA--YIK-KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHH---HH--HHH-hcCCCCCCHHHHHHHH
Confidence 9999999999998777889999999999999999999987654211 11111 00 111 1123456899999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||+.++.....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999987654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=141.57 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=110.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCC--CCEEEe
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPK--GDAILM 270 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~--~D~v~~ 270 (369)
...+++.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+..+. .|+|++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 356677676 56778999999999999999999999999999999 888888765 3789999998763232 399999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhh---hhhhHH-HHHhhcCCccCCHHHHHHHHH
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA---SMTDII-MLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~~~~~t~~e~~~ll~ 346 (369)
..++||+++ ..+++++++++|||||++++........+......... .+.... ...........+.+++.++|+
T Consensus 96 ~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999999965 46899999999999999998743211111100000000 010000 000001223468999999999
Q ss_pred HcCCccee
Q 017595 347 EAGFNGVN 354 (369)
Q Consensus 347 ~aGf~~~~ 354 (369)
++||++..
T Consensus 174 ~aGf~v~~ 181 (255)
T PRK14103 174 DAGCKVDA 181 (255)
T ss_pred hCCCeEEE
Confidence 99998543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=144.89 Aligned_cols=151 Identities=18% Similarity=0.229 Sum_probs=109.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC--CEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG--DAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~v~~~~v 273 (369)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 679999999 777765543 1579999999988 66653 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcc--hHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA--TAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
+||+++ ..+++++++++|||||+++|.+......... .........++....... --...+.++|.++++++||.
T Consensus 196 ~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 999965 5689999999999999999998754322111 000001111111111000 11234899999999999999
Q ss_pred ceeEEEec
Q 017595 352 GVNYECFV 359 (369)
Q Consensus 352 ~~~~~~~~ 359 (369)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=130.21 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=111.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC------CeEEEcch-hHHHHhCCCC---------CCceEEeCCCCC-CCCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH------IEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~- 265 (369)
.....++|||+||||..+..+++..+. .+++++|+ |.+++.++++ .++.++++|..+ |+|..
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 334589999999999999999999877 78999999 9998876542 459999999999 99875
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH-----------------HH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII-----------------ML 327 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------------~~ 327 (369)
|.|++.+-+.++++ ..+.|++++|+|||||++.+.|+...+... ..++.....+. .+
T Consensus 178 ~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred ceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhhhH
Confidence 99999999999966 568999999999999999999987544211 11111111111 11
Q ss_pred HhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 328 MQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 328 ~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
... --+..+.+++..+.++|||+.+.
T Consensus 253 veS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred Hhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 111 12335899999999999999887
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-15 Score=132.33 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=120.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~- 264 (369)
.++..+. ..+..+|||||||+|.++..++..+| +.+++++|. +.+++.+++. .++.++.+|+.+ +.+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4444444 34568999999999999999999988 789999999 7776655442 568999999987 4443
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH---HHhhcC--------
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM---LMQFSG-------- 332 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~-------- 332 (369)
.|+|++.+++|++++ ...+|+++.++|+|||++++.+...+..... ...........+ .....+
T Consensus 121 ~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T PRK00216 121 SFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPL--KKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHH--HHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence 399999999999954 5689999999999999999998876543210 000000000000 000001
Q ss_pred ----CccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEEeC
Q 017595 333 ----GRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEFIK 369 (369)
Q Consensus 333 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 369 (369)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578999999999999999998865 6677888775
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=138.27 Aligned_cols=139 Identities=24% Similarity=0.327 Sum_probs=109.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCCC--CEEEeccccccCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPKG--DAILMKWILHNWD 278 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 278 (369)
...+|||||||+|.++..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.. |+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999988889999999 8887776543 578999999987 66543 9999999999997
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+. ..+|+++++.|+|||++++.+...+.. +... ...+..+ ...+.+++.++|+++||+.+++...
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 65 478999999999999999987654321 1111 1111111 1257999999999999999998776
Q ss_pred c
Q 017595 359 V 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 5
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=134.67 Aligned_cols=158 Identities=20% Similarity=0.237 Sum_probs=130.9
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~ 264 (369)
..+.+++.+. +++..+|||||||-|.++...+++| +++++++++ ++..+.+++. .+|+++-.|..+..+.
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 3567777787 8899999999999999999999999 999999999 7777665542 5899999998774444
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
.|-|++..+++|+..+.-..+++++++.|+|||+++++....++.+.. ...++..-..+++|..++..++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHH
Confidence 799999999999999889999999999999999999999987764321 1223333334689999999999999
Q ss_pred HHHcCCcceeEEEec
Q 017595 345 ANEAGFNGVNYECFV 359 (369)
Q Consensus 345 l~~aGf~~~~~~~~~ 359 (369)
.+++||.+..+....
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998876554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-15 Score=129.50 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=119.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCC--CC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPK--GD 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~--~D 266 (369)
.+++.+. .....+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..++.++.+|+.+ +.+. .|
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3344343 346689999999999999999999987 78999998 777665543 2578999999987 5543 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh---hc-C----------
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ---FS-G---------- 332 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~-~---------- 332 (369)
+|++.+++|+.+ +...+|+++++.|+|||++++.+...+.... ............+... .. .
T Consensus 109 ~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 109 AVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred EEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 999999999985 4668999999999999999999886544311 1100111111000000 00 0
Q ss_pred -CccCCHHHHHHHHHHcCCcceeEEEecCc-eeEEEEeC
Q 017595 333 -GRERTTQEFMALANEAGFNGVNYECFVCN-FCIIEFIK 369 (369)
Q Consensus 333 -~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 369 (369)
....+.++|.++|+++||+.+++.+.... .++++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347899999999999999999998866 55666654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=146.23 Aligned_cols=152 Identities=19% Similarity=0.258 Sum_probs=116.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~- 265 (369)
.+.+++.+. ++...+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++|..
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 445666665 5667899999999999999988876 779999999 777776643 2579999999988 66643
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++..+++|+++ ...+|++++++|+|||++++.+........... . ..... ..+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~---~~~~~---~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPE---F---AEYIK---QRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHH---H---HHHHH---hcCCCCCCHHHHHHH
Confidence 99999999999965 468999999999999999999987644321111 1 11111 124567899999999
Q ss_pred HHHcCCcceeEEEe
Q 017595 345 ANEAGFNGVNYECF 358 (369)
Q Consensus 345 l~~aGf~~~~~~~~ 358 (369)
++++||+++++...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999876543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-15 Score=135.11 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=108.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CCCCCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PSYRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~p~ 264 (369)
+..++..+. ....++|||||||+|.++..++..++. .++++|. +.++..+ ....++.+..+++.+ +...
T Consensus 110 ~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 110 WDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 345555554 334589999999999999999888764 7899998 5554432 223578888888766 3333
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
.|+|++..+|||+++ ...+|++++++|+|||.|++.+...+.......... .....|.. ....+|.+++..
T Consensus 188 ~FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~---~ry~k~~n---v~flpS~~~L~~ 259 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK---DRYAKMKN---VYFIPSVSALKN 259 (314)
T ss_pred CcCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch---HHHHhccc---cccCCCHHHHHH
Confidence 499999999999955 468999999999999999998776543321110000 00001110 123468999999
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
+++++||+.+++....
T Consensus 260 ~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 260 WLEKVGFENFRILDVL 275 (314)
T ss_pred HHHHCCCeEEEEEecc
Confidence 9999999999887543
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=135.94 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=113.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 265 (369)
++.+++++. +++..+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+--+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 557777776 8888999999999999999999998 789999998 666655432 268999999987622245
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|.|++..++.|++.+....+++++.++|+|||++++...+....... .......++..-..+++|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888999999999999999999988876543111 000111133333346799999999999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||++.++....
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999999887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=132.50 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=107.3
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEeccccccC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~ 277 (369)
++|||||||+|.++..+++.+|+.+++++|+ +.+++.++. .++++++.+|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777665543 2578999999976 55544 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
++ ...+|++++++|+|||++++.+.......... .. .......+.++|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~------------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE--HE------------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc--cc------------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 55 56899999999999999999987543211000 00 0012245789999999999999999877
Q ss_pred ecC
Q 017595 358 FVC 360 (369)
Q Consensus 358 ~~~ 360 (369)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=137.18 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=108.2
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CCCCCceEEeCCCCC-CCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PSYRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~p~~- 265 (369)
.++..++.+ ...+|||||||+|.++..++..++. .++++|. +.++..+ ....++.++.+|+.+ +.+..
T Consensus 113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 444445423 3589999999999999999998766 5999998 5444321 113579999999887 55444
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..++||..+ ...+|+++++.|+|||++++...+.+.......... .. +..|. .....+|.+++.+++
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~-~~--y~~~~---~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG-DR--YAKMR---NVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch-hH--HhcCc---cceeCCCHHHHHHHH
Confidence 99999999999854 568999999999999999987665544322110000 00 00010 012346899999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||+.+++....
T Consensus 263 ~~aGF~~i~~~~~~ 276 (322)
T PRK15068 263 ERAGFKDVRIVDVS 276 (322)
T ss_pred HHcCCceEEEEeCC
Confidence 99999999887543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=124.82 Aligned_cols=137 Identities=21% Similarity=0.214 Sum_probs=96.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCC-C-CEEEeccccccCCh
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDD 279 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d 279 (369)
.....+|||||||+|.++..+.+... +++++|. +.+++. ..+.....+... +.+. . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999977654 8999998 777766 233333332223 2232 3 99999999999964
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
...+|+++++.|||||++++.++..... .. .....+. .... .......++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~-~~---~~~~~~~-~~~~-~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP-SP---RSFLKWR-YDRP-YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH-HH---HHHHHCC-GTCH-HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch-hh---hHHHhcC-CcCc-cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6799999999999999999999876431 00 0111110 0000 00234567999999999999999875
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=125.14 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=105.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 265 (369)
+.+++.++ .....+|||+|||+|..+..++++ +.+++++|. +.+++.+++ ..++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34455554 445689999999999999999986 458999999 777776543 2468889999877 55544
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..++|++++++...++++++++|+|||++++.+.+..+..... .. --...+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~------~~----------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT------VG----------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC------CC----------CCCccCHHHHHHHh
Confidence 999999999999888889999999999999999877765543321000 00 01235788999998
Q ss_pred HHcCCcceeEE
Q 017595 346 NEAGFNGVNYE 356 (369)
Q Consensus 346 ~~aGf~~~~~~ 356 (369)
+ ||++++..
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 6 89887763
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=129.59 Aligned_cols=145 Identities=18% Similarity=0.294 Sum_probs=109.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~--D~v~~~~ 272 (369)
+....+|||||||+|..+..+++. .++.+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 456789999999999988877776 46678999999 888887664 2689999999987 66543 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcc
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNG 352 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 352 (369)
++|++++ ..+++++++++|||||++++.+....... +. . ...+..+...+ .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~---~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGEL-PE---E--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCC-CH---H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9999855 45799999999999999999998754321 11 0 11112222111 344568999999999999999
Q ss_pred eeEEE
Q 017595 353 VNYEC 357 (369)
Q Consensus 353 ~~~~~ 357 (369)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=125.74 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=108.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCCCCC-C-CCEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFERIP-K-GDAIL 269 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p-~-~D~v~ 269 (369)
...+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+..+ . .|+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 456777676 66778999999999999999999999999999999 8888877654 679999999976323 2 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhc---CCccCCHHHHHHHHH
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFS---GGRERTTQEFMALAN 346 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~t~~e~~~ll~ 346 (369)
+..++|++++ ..++|++++++|+|||++++.-......+.............+....... .....+..++.+++.
T Consensus 99 ~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 9999999865 46899999999999999988632111100000000000000000000000 123457889999999
Q ss_pred HcCCcc
Q 017595 347 EAGFNG 352 (369)
Q Consensus 347 ~aGf~~ 352 (369)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999874
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-15 Score=135.98 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=103.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC--CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK--GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~--~D~v~~~~vl 274 (369)
...+|||||||+|.++..+++ ++.+++++|. +.+++.++.+ .+++++.+|+.+ +.+. .|+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346999999999999998876 3678999999 8888876532 378999999876 4443 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC----CccCCHHHHHHHHHHcCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG----GRERTTQEFMALANEAGF 350 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~t~~e~~~ll~~aGf 350 (369)
||+++. ..+|++++++|||||++++........ ..........++... ...+ .+..+.+++.++++++||
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~-lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRW-LPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhc-CCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 999664 589999999999999999987642210 000000000011111 1111 135689999999999999
Q ss_pred cceeEEEe
Q 017595 351 NGVNYECF 358 (369)
Q Consensus 351 ~~~~~~~~ 358 (369)
+++++..+
T Consensus 283 ~i~~~~G~ 290 (322)
T PLN02396 283 DVKEMAGF 290 (322)
T ss_pred eEEEEeee
Confidence 99988543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-15 Score=116.58 Aligned_cols=97 Identities=18% Similarity=0.300 Sum_probs=81.9
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCC-CC-CCCC-CCEEEecc-cc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNM-FE-RIPK-GDAILMKW-IL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~-~~-~~p~-~D~v~~~~-vl 274 (369)
..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+ .. +.+. .|+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 47999999999999999999999999999999 888876653 37999999999 33 3333 49999999 67
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWDD-EHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 75543 577899999999999999999865
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-14 Score=125.14 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=110.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC--
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG-- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~-- 265 (369)
.+++.+. +....+|||+|||+|.++..+++.+ |+.+++++|. +..++.+++ .+++.+..+|+.. +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3444455 6677899999999999999999987 7889999999 777665543 2678999999877 55543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc-chHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE-ATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++.++++++++ ...++++++++|+|||++++.+........ ............... .......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS---DHFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 99999999999965 568899999999999999998864221100 000000111111111 112233456789999
Q ss_pred HHHcCCcceeEEE
Q 017595 345 ANEAGFNGVNYEC 357 (369)
Q Consensus 345 l~~aGf~~~~~~~ 357 (369)
++++||+.+++..
T Consensus 164 l~~aGf~~~~~~~ 176 (241)
T PRK08317 164 FREAGLTDIEVEP 176 (241)
T ss_pred HHHcCCCceeEEE
Confidence 9999999887644
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=123.19 Aligned_cols=137 Identities=21% Similarity=0.311 Sum_probs=100.1
Q ss_pred CCcceEEEEcCChhHHHHHHH-HhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCC-CCEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIIT-SRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPK-GDAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~-~D~v~~~~ 272 (369)
++..+|||+|||+|.++..++ +.+|+.+++++|. +.+++.++. .++++|+.+|+.+ + ++. .|+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5688999999999 888887765 3689999999999 4 433 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh--hcCCccCCHHHHHHHHHHcC
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ--FSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~t~~e~~~ll~~aG 349 (369)
++|++++ ...+|+++.++|+|||.+++.+...... ..........+.+-.. ...+. ..++|..+|++||
T Consensus 82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPNHNDE----LPEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEEHSHH----HHHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccC--HHHHHHHHHHHcCCCcEEEEEECChHHH----HHHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 9999955 4589999999999999999998872111 0011111111111111 11112 6789999999998
|
... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=139.85 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=105.0
Q ss_pred ChhhhhhcCchHHHHHHHHHHhhhhH--hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH
Q 017595 167 GVYEYAGNDSRFNGVFNKAMLNHTSI--VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ 243 (369)
Q Consensus 167 ~~~e~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 243 (369)
.+|+++..+++....|...|...... ........++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 46777777766666666544432211 0111112223 44678999999999999999999999999999999 77777
Q ss_pred hCCCC-----CCceEEeCCCCC-C--CCCC--CEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 244 NAPSY-----RGVKHIGGNMFE-R--IPKG--DAILMKWILHNW-----------DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 244 ~a~~~-----~rv~~~~~d~~~-~--~p~~--D~v~~~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.+++. .++.++.+|..+ + ++.+ |+|+++.++|++ ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 66542 467889999876 3 4433 999999999976 2467889999999999999999999
Q ss_pred eccCCCC
Q 017595 303 DRMPMVT 309 (369)
Q Consensus 303 e~~~~~~ 309 (369)
|.+.++.
T Consensus 537 D~v~~E~ 543 (677)
T PRK06922 537 DGIMTED 543 (677)
T ss_pred eCccCCc
Confidence 9866543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=128.00 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=107.4
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC--CCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE--RIPK 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~ 264 (369)
..+++.++ ....+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 45566554 45579999999999999999987 467899999 8888776542 578999999865 2333
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhh-hhhhhHHHHHh------hcCCcc
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAARE-ASMTDIIMLMQ------FSGGRE 335 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~-~~~~d~~~~~~------~~~~~~ 335 (369)
.|+|++..+||+++++ ..+|++++++|||||++++........ ...... ........... ..-...
T Consensus 111 ~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 185 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDYP 185 (255)
T ss_pred CCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCCC
Confidence 3999999999999654 589999999999999999876543210 000000 00000000000 000123
Q ss_pred CCHHHHHHHHHHcCCcceeEEEec
Q 017595 336 RTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.+++.++++++||+++++.-+.
T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 186 LDPEQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred CCHHHHHHHHHHCCCeEeeeeeEE
Confidence 578999999999999998776544
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-14 Score=116.93 Aligned_cols=178 Identities=15% Similarity=0.203 Sum_probs=126.2
Q ss_pred HhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCCCCC-
Q 017595 187 LNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFERIP- 263 (369)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p- 263 (369)
...+++ +.+++..++ .....+|+|+|||+|..+..|++++|+..++++|. +.|++.|+.+ ++++|..+|+.+-.|
T Consensus 13 ~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~ 90 (257)
T COG4106 13 DERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE 90 (257)
T ss_pred HhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC
Confidence 344444 457888888 88889999999999999999999999999999999 8888887654 899999999988444
Q ss_pred -CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh---hcCCccCCHH
Q 017595 264 -KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ---FSGGRERTTQ 339 (369)
Q Consensus 264 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~~t~~ 339 (369)
..|+++.+.+||.+|| ..++|.++...|.|||.|.+.=+-.-+.+............-+..... .......+..
T Consensus 91 ~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 91 QPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred Cccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 3499999999999955 578999999999999999987543222211111100000000111110 0123456899
Q ss_pred HHHHHHHHcCCcceeEEE------ecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYEC------FVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~------~~~~~~vi~~~~ 369 (369)
.|-++|...+-+ +.++. +.+..+|+++.|
T Consensus 169 ~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 169 AYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 999999887754 33332 347778887765
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-13 Score=117.58 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=107.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~ 281 (369)
...+|||||||+|.++..+++.+ +.+++++|. +.+++.+++. ..++.+|+.+ |++.. |+|++..+||+++|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d-- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN-- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC--
Confidence 35799999999999999999887 578999999 9999988754 3467888887 77654 99999999999955
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH-hhcCC-------------ccCCHHHHHHHHHH
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM-QFSGG-------------RERTTQEFMALANE 347 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~-------------~~~t~~e~~~ll~~ 347 (369)
..++|++++++||| .+++++...++.........+....-+..+. .+ .+ ...+.+++.+++++
T Consensus 126 ~~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 126 IEKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred HHHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56899999999999 3556676555432111111111111111111 11 11 22488999999999
Q ss_pred cCCcceeEEEecCcee-EEEEeC
Q 017595 348 AGFNGVNYECFVCNFC-IIEFIK 369 (369)
Q Consensus 348 aGf~~~~~~~~~~~~~-vi~~~~ 369 (369)
+| ..++......+.+ +..++|
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEee
Confidence 84 7788877775544 555443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-13 Score=117.79 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=100.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCC--CCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPK--GDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~--~D~v~~~~v 273 (369)
.+..+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++.+...+... +.+. .|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999998888754 56789999999 8888877653 456666665433 3332 399999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh------cC-----CccCCHHHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF------SG-----GRERTTQEFM 342 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~------~~-----~~~~t~~e~~ 342 (369)
|||+++++...+|++++++++ |.+++.+...+.. .. ........... .+ .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~----~~----~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL----AY----ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH----HH----HHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999998888899999999998 5677776654321 00 00000000000 01 1346899999
Q ss_pred HHHHHcCCcceeEEEe
Q 017595 343 ALANEAGFNGVNYECF 358 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~ 358 (369)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998776654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=118.90 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=103.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCC-CCCCC--CEEEeccccccCCh
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFE-RIPKG--DAILMKWILHNWDD 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d 279 (369)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.++.. +++.++.+|+.+ +++.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347999999999999999999999999999999 7777665543 578999999987 55543 99999999999854
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
...+|++++++|+|||++++.++...... ...... .. ......+.++|.++++++ |+.+.+.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~~---------~~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTLH---------ELRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCHH---------HHHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 56899999999999999999876432210 000000 00 134456889999999998 8876653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=117.21 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=101.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DA 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 267 (369)
.+++.++ .....+|||+|||+|..+..++++ +.+++++|. +.+++.+++. -++.+...|+.. +++.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4444454 344689999999999999999986 468899998 7777765431 136777778765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 347 (369)
|++..++|++++++...++++++++|+|||++++.+.......... .+.....+.+++.++|.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~----------------~~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH----------------MPFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC----------------CCcCccCCHHHHHHHhC-
Confidence 9999999999888888999999999999999888776533211000 00112457899999985
Q ss_pred cCCcceeEE
Q 017595 348 AGFNGVNYE 356 (369)
Q Consensus 348 aGf~~~~~~ 356 (369)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58877765
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-14 Score=107.63 Aligned_cols=88 Identities=22% Similarity=0.427 Sum_probs=76.0
Q ss_pred EEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---CCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHH
Q 017595 211 VDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCL 283 (369)
Q Consensus 211 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~ 283 (369)
||+|||+|..+..++++ +..+++++|. +.+++.+++ ..++.++.+|+.+ +++.. |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999999 8899999999 777776654 3567799999988 77754 999999999999 6678
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 017595 284 TLLKNCYEAIPENGKIII 301 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~lli 301 (369)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.5e-13 Score=116.65 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=101.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 276 (369)
....+|||||||+|.++..+++. +.+++++|. +.++..+++. .++.+..+|+.+.....|+|++..+++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 35689999999999999999876 458899998 8888766542 3789999998773333499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh--hcCCccCCHHHHHHHHHHcCCccee
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ--FSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
++++....+++++++.+++++.+.+.. .. ...... ..+.-.+... ......++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAP----KT---AWLAFL-KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---hHHHHH-HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 988888899999999988765444321 11 001000 0110000000 0012345899999999999999998
Q ss_pred EEEec
Q 017595 355 YECFV 359 (369)
Q Consensus 355 ~~~~~ 359 (369)
.....
T Consensus 204 ~~~~~ 208 (219)
T TIGR02021 204 EGLVS 208 (219)
T ss_pred eeccc
Confidence 86655
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=118.55 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=82.9
Q ss_pred CCcceEEEEcCChhH----HHHHHHHhCC-----CCeEEEcch-hHHHHhCCCC--------------------------
Q 017595 205 EQIKQLVDVGGGLGV----TLNIITSRYP-----HIEGVNFDL-PHVIQNAPSY-------------------------- 248 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 248 (369)
....+|+|+|||+|. +++.+++.++ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4666666655 578999999 8888877652
Q ss_pred -------CCceEEeCCCCC-CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 -------RGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 -------~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+|.|..+|+.+ +.+. . |+|+++++|||+++++..+++++++++|+|||+|++-..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 4433 3 999999999999988889999999999999999998654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=111.13 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=118.0
Q ss_pred HHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCce
Q 017595 180 GVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVK 252 (369)
Q Consensus 180 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~ 252 (369)
..|++.|.....-....+.. +-+.++...+|+||||+|..-.- ..--|..+++.+|. +.+.+.+.+ +.++.
T Consensus 51 ~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 34555555544333333332 22245667899999999975433 22236788999999 777665433 35666
Q ss_pred -EEeCCCCC-C-CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHH
Q 017595 253 -HIGGNMFE-R-IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIML 327 (369)
Q Consensus 253 -~~~~d~~~-~-~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 327 (369)
|+.++..+ + ++++ |+|++..+|... +++++.|++++++|||||+++++|.+..+... +........+....
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~--~n~i~q~v~ep~~~ 204 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGF--WNRILQQVAEPLWH 204 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchH--HHHHHHHHhchhhh
Confidence 88888887 4 5654 999999999988 77889999999999999999999998765421 11112222232222
Q ss_pred HhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeE
Q 017595 328 MQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCI 364 (369)
Q Consensus 328 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 364 (369)
..+ .|-..+++.|+ .+++|-|+..+......+..+
T Consensus 205 ~~~-dGC~ltrd~~e-~Leda~f~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 205 LES-DGCVLTRDTGE-LLEDAEFSIDSCKRFNFGTTW 239 (252)
T ss_pred eec-cceEEehhHHH-HhhhcccccchhhcccCCceE
Confidence 222 56666777775 457899999888776655443
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-12 Score=108.35 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=116.7
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHH---HHh-CC--CCCCc-eEEeCCCCCC-C--C-------CC-CEEE
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHV---IQN-AP--SYRGV-KHIGGNMFER-I--P-------KG-DAIL 269 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~-a~--~~~rv-~~~~~d~~~~-~--p-------~~-D~v~ 269 (369)
+|||||+|||..+..++..+|++..---|. +.. +.. .. ..+++ .-+..|+.++ + + .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999998755554 222 111 11 12332 2334455542 2 2 12 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
+.+++|-.+.+.+..+++.+.++|+|||.|++.-++..++.-.+. -...+|.......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999998876532211 12234434333334677899999999999999
Q ss_pred CcceeEEEecCceeEEEEeC
Q 017595 350 FNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 350 f~~~~~~~~~~~~~vi~~~~ 369 (369)
|+.++.+.++...-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998777777765
|
The function of this family is unknown. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-14 Score=110.95 Aligned_cols=87 Identities=22% Similarity=0.396 Sum_probs=60.1
Q ss_pred EEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C---CceEEeCCCCCCCC--CCCEEEeccccccCC
Q 017595 211 VDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R---GVKHIGGNMFERIP--KGDAILMKWILHNWD 278 (369)
Q Consensus 211 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~ 278 (369)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ . ++++...+..+..+ ..|+|++.++|||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999999 8888777764 2 23444444444222 33999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEE
Q 017595 279 DEHCLTLLKNCYEAIPENGKI 299 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~l 299 (369)
++...+|+++++.|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 66779999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=131.28 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=109.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC---CCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE---RIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~---~~p~~ 265 (369)
...+++.++ .....+|||||||+|.++..+++.+. +++++|. +.+++.+.. .+++.++.+|+.+ +++..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 445666665 44567999999999999999998854 6888898 777765542 3578999999964 44543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 --DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++..++||+++++..++|+++++.|+|||++++.|.+........ . . ......++..+|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999988889999999999999999999998754321100 0 0 01223456889999
Q ss_pred HHHHcCCcceeE
Q 017595 344 LANEAGFNGVNY 355 (369)
Q Consensus 344 ll~~aGf~~~~~ 355 (369)
+|.++||.....
T Consensus 169 ~f~~~~~~~~~~ 180 (475)
T PLN02336 169 VFKECHTRDEDG 180 (475)
T ss_pred HHHHheeccCCC
Confidence 999999987643
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=111.15 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=105.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC-CCEEEeccccccCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK-GDAILMKWILHNWD 278 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~ 278 (369)
...+|||+|||+|.++..+++..+ +++++|. +.+++.+++. .+++++.+|+.+..+. .|+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 347899999999999999999876 8899998 8877765542 3688899998774333 49999998887765
Q ss_pred hhH-------------------HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 279 DEH-------------------CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 279 d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++. ...+|+++.+.|+|||++++.+.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 321 35789999999999999999875321 145
Q ss_pred HHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
++.+++++.||+...+....-++-.+++||
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 678889999999999988888888888876
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=112.12 Aligned_cols=142 Identities=10% Similarity=0.127 Sum_probs=97.3
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH----hCCCCCCceEEeCCCCCC-----CCCC-CEE
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ----NAPSYRGVKHIGGNMFER-----IPKG-DAI 268 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p~~-D~v 268 (369)
.++ +.+..+|||+|||+|.++..+++..+..+++++|. +.+++ .+++.+++.++.+|...+ ++.. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 354 66778999999999999999999987678999999 75554 445557899999998753 2233 888
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCCEEEEE-eccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 269 LMKWILHNWDDE-HCLTLLKNCYEAIPENGKIIII-DRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 269 ~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+ |+.+++ ....+|+++++.|||||+++|. .. .+-+.... .. +..++..++++
T Consensus 146 ~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~d~~~~-------------------~~-~~~~~~~~~l~ 199 (226)
T PRK04266 146 Y-----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSIDVTKD-------------------PK-EIFKEEIRKLE 199 (226)
T ss_pred E-----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccccCcCC-------------------HH-HHHHHHHHHHH
Confidence 7 334333 3346789999999999999994 22 11000000 00 11234458999
Q ss_pred HcCCcceeEEEecCc---eeEEEEe
Q 017595 347 EAGFNGVNYECFVCN---FCIIEFI 368 (369)
Q Consensus 347 ~aGf~~~~~~~~~~~---~~vi~~~ 368 (369)
++||+.++....... +..+.++
T Consensus 200 ~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 200 EGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 999999999877533 4444443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-12 Score=114.68 Aligned_cols=148 Identities=13% Similarity=0.155 Sum_probs=105.5
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCCC--CE
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPKG--DA 267 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~ 267 (369)
....+++.++ .....+|||+|||+|.++..+.+. ..+++++|+ +.+++.+++. ..+.++.+|+.+ +++.. |+
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 3455666665 445689999999999999888764 468999999 8888877654 446789999987 66653 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 347 (369)
|++..++|+.++ ...+|++++++|+|||++++..+.....+ ... ..+... ..........+.++|.+++..
T Consensus 107 V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--el~---~~~~~~--~~~~~~~~~~~~~~l~~~l~~ 177 (251)
T PRK10258 107 AWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP--ELH---QAWQAV--DERPHANRFLPPDAIEQALNG 177 (251)
T ss_pred EEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH--HHH---HHHHHh--ccCCccccCCCHHHHHHHHHh
Confidence 999999998754 56899999999999999999876543211 110 011000 000112334689999999998
Q ss_pred cCCcc
Q 017595 348 AGFNG 352 (369)
Q Consensus 348 aGf~~ 352 (369)
.|+..
T Consensus 178 ~~~~~ 182 (251)
T PRK10258 178 WRYQH 182 (251)
T ss_pred CCcee
Confidence 88764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=112.45 Aligned_cols=125 Identities=15% Similarity=0.261 Sum_probs=96.1
Q ss_pred HhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCCC-CEEEe
Q 017595 199 DSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPKG-DAILM 270 (369)
Q Consensus 199 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~~-D~v~~ 270 (369)
..++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|...+++.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 55678999999999999999999999999999999 777776653 257899999886555443 99998
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
....+++ ..+++.+++.|+|||++++.....+ +.+++.+++++.||
T Consensus 104 ~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGV 149 (187)
T ss_pred CCCccCH-----HHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCC
Confidence 8765543 4689999999999999987543211 14567788999999
Q ss_pred cceeEEEe
Q 017595 351 NGVNYECF 358 (369)
Q Consensus 351 ~~~~~~~~ 358 (369)
+.+++...
T Consensus 150 ~~~~~~~~ 157 (187)
T PRK08287 150 SELDCVQL 157 (187)
T ss_pred CcceEEEE
Confidence 87776443
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-13 Score=114.17 Aligned_cols=102 Identities=18% Similarity=0.346 Sum_probs=88.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCCCCCCC--CEEEeccccccCChh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFERIPKG--DAILMKWILHNWDDE 280 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~--D~v~~~~vlh~~~d~ 280 (369)
....+|||||||+|..+..+++..|+.+++++|+ +.+++.+++ .+++.+..+|+.++++.. |+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 3567899999999999999999889999999999 889998876 477899999998866543 999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 281 HCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 281 ~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+..++++++++++ +++++|.|...+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 8899999999997 4688888876543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=122.84 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=114.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCCCCCCCCEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFERIPKGDAIL 269 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p~~D~v~ 269 (369)
...+++.+. .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ..+++...|+.+.-...|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 345556665 6677899999999999999998876 679999999 8887766542 247788888755212249999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
+..+++|.++.....++++++++|||||++++.+...+...... ..+.+- ..++++...+.+++...++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~---yifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK---YIFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee---eecCCCcCCCHHHHHHHHH-CC
Confidence 99999999887778999999999999999999887654321110 011111 1245788889999888766 58
Q ss_pred CcceeEEEec
Q 017595 350 FNGVNYECFV 359 (369)
Q Consensus 350 f~~~~~~~~~ 359 (369)
|.+.++....
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9988776554
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-13 Score=117.40 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=103.9
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------C----CceEEeCCCCCCCCCCCEEEecccc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------R----GVKHIGGNMFERIPKGDAILMKWIL 274 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----rv~~~~~d~~~~~p~~D~v~~~~vl 274 (369)
.+|||||||+|.++..|++.. ..++++|. +.+++.|+.+ . |+++.+.|.....+..|+|++..|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 679999999999999999886 67889998 8888887754 1 4677777776655557999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh-hHHHHHhhcCC----ccCCHHHHHHHHHHcC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT-DIIMLMQFSGG----RERTTQEFMALANEAG 349 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~----~~~t~~e~~~ll~~aG 349 (369)
+|. .+...+++.+.+.|||||+++|......-. .+ ....++ +........|. +..++++...++..+|
T Consensus 169 eHV--~dp~~~l~~l~~~lkP~G~lfittinrt~l---S~--~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 169 EHV--KDPQEFLNCLSALLKPNGRLFITTINRTIL---SF--AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHH---Hh--hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 999 556799999999999999999987743211 00 011111 12222222222 3468999999999999
Q ss_pred CcceeEEE
Q 017595 350 FNGVNYEC 357 (369)
Q Consensus 350 f~~~~~~~ 357 (369)
+++..+.-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 99877643
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=109.75 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=106.9
Q ss_pred eEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCC-----CCCC--CEEEeccc
Q 017595 209 QLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFER-----IPKG--DAILMKWI 273 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~-----~p~~--D~v~~~~v 273 (369)
+||+||||.|.+..-+++-.|+ +++..+|. |..++..++. .++..-..|+..+ .+.+ |++++.+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999888 99999999 8888877654 4566666666542 2233 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc---cCCHHHHHHHHHHcCC
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR---ERTTQEFMALANEAGF 350 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~t~~e~~~ll~~aGf 350 (369)
|...+++.....+++++++|||||.|++.|....+-.. ........++....+. +.|. -.+.+++.++|++|||
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq--lRF~~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ--LRFKKGQCISENFYVR-GDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH--HhccCCceeecceEEc-cCCceeeeccHHHHHHHHHhccc
Confidence 99999999999999999999999999999876433100 0000111122222221 1232 3589999999999999
Q ss_pred cceeE
Q 017595 351 NGVNY 355 (369)
Q Consensus 351 ~~~~~ 355 (369)
..++.
T Consensus 231 ~~~~~ 235 (264)
T KOG2361|consen 231 EEVQL 235 (264)
T ss_pred chhcc
Confidence 97764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=118.12 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=98.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~ 277 (369)
...+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. ++++. |+|++..+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4569999999999999999886 468999999 7777655431 368888888876 45444 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
++++...++++++++|+|||+++++.....+..... .+....++.+|+.++++ +|++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 888889999999999999999888765433221100 00122357899999996 58888764
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=116.65 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=105.3
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh------CCC-CCCceEEeCCCCC-CCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN------APS-YRGVKHIGGNMFE-RIP 263 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~------a~~-~~rv~~~~~d~~~-~~p 263 (369)
.++.+...++.+ ..++|||||||+|.++..++.+.+. .++++|. +....+ ... ..++.+.+.-+.+ +..
T Consensus 103 KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~ 180 (315)
T PF08003_consen 103 KWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNL 180 (315)
T ss_pred hHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcccc
Confidence 345566666434 4589999999999999999998764 5888886 322222 111 2234444333333 322
Q ss_pred CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH
Q 017595 264 KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM 342 (369)
Q Consensus 264 ~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 342 (369)
.. |+|++-.||||..+ ....|++++..|+|||.|++-..+.+.+......... .+-.|. -.....|...+.
T Consensus 181 ~~FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~---rYa~m~---nv~FiPs~~~L~ 252 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED---RYAKMR---NVWFIPSVAALK 252 (315)
T ss_pred CCcCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC---cccCCC---ceEEeCCHHHHH
Confidence 33 99999999999944 5789999999999999999877776655332211110 000111 023467999999
Q ss_pred HHHHHcCCcceeEEEec
Q 017595 343 ALANEAGFNGVNYECFV 359 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~~ 359 (369)
.|++++||+.++++...
T Consensus 253 ~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHcCCceEEEecCc
Confidence 99999999999987654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-13 Score=104.98 Aligned_cols=88 Identities=19% Similarity=0.366 Sum_probs=72.7
Q ss_pred EEEEcCChhHHHHHHHHhC---CCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCC--CCEEEec-ccccc
Q 017595 210 LVDVGGGLGVTLNIITSRY---PHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPK--GDAILMK-WILHN 276 (369)
Q Consensus 210 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~--~D~v~~~-~vlh~ 276 (369)
|||+|||+|..+..+++.+ |+.+++++|+ +.+++.+++. .+++++..|+.+ ++.. .|+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 8888876542 489999999988 5433 3999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCC
Q 017595 277 WDDEHCLTLLKNCYEAIPENG 297 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG 297 (369)
+++++..++|+++++.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=112.22 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=98.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 276 (369)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. +++.+..+|+....+..|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4567999999999999999998754 5899998 7777766542 4789999995333223499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH-HHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM-LMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
+++++...+++++.+.+++++ ++.... .. . ............. ..........+.++|.++++++||++.++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~-~i~~~~---~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSL-IFTFAP---YT--P-LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeE-EEEECC---cc--H-HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 998888999999999775443 333221 11 0 0000000000000 00001123457899999999999999998
Q ss_pred EEecC
Q 017595 356 ECFVC 360 (369)
Q Consensus 356 ~~~~~ 360 (369)
.+...
T Consensus 213 ~~~~~ 217 (230)
T PRK07580 213 ERISS 217 (230)
T ss_pred eeccc
Confidence 77653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=116.07 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=85.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---------CCceEEeCCCCCCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~- 264 (369)
-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++.. .+++++..|.++.++.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4555565 33346999999999999999999999999999999 6777766531 3689999999885543
Q ss_pred -CCEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -GDAILMKWILHN---WDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~D~v~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|+++-.+|. .+++.+.++++.+++.|+|||+++++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 399999866653 455667899999999999999999884
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-13 Score=113.59 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=101.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CC--ceEEeCCCCC-CCC--CCCEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RG--VKHIGGNMFE-RIP--KGDAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~r--v~~~~~d~~~-~~p--~~D~v~~~~vlh~ 276 (369)
...+|||||||.|.++..+++.. .++++.|. +..++.++.+ .. +++.....++ ... ..|+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 45899999999999999999986 88999999 8888888755 23 3355555444 222 3499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC-----ccCCHHHHHHHHHHcCCc
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG-----RERTTQEFMALANEAGFN 351 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~t~~e~~~ll~~aGf~ 351 (369)
.++++ .+++.|.+.+||||.+++........ +..-.......+.. ..+.| +...++|+..++.++|+.
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~--~vP~gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLR--IVPKGTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHH--hcCCcchhHHHhcCHHHHHHhcccCCce
Confidence 97764 69999999999999999887753221 11000000111111 12232 345789999999999999
Q ss_pred ceeEEEe
Q 017595 352 GVNYECF 358 (369)
Q Consensus 352 ~~~~~~~ 358 (369)
+.....+
T Consensus 210 ~~~~~g~ 216 (243)
T COG2227 210 IIDRKGL 216 (243)
T ss_pred EEeecce
Confidence 8877554
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-12 Score=109.82 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=94.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCc-eEEeCCCCC--CCCC-CCEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGV-KHIGGNMFE--RIPK-GDAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv-~~~~~d~~~--~~p~-~D~v~~~~vlh 275 (369)
...+.||+|+|.|..+..++...-+ ++-.+|. +..++.+++ .+++ ++.+.-+.+ |.+. .|+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4689999999999999987655322 4555555 666666652 2343 444444433 3332 39999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
|++|++.+.+|++|..+|+|+|.|+|-|.+...... .+| ...++-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~---------~~D-----~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD---------EFD-----EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---------EEE-----TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---------ccC-----CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999999999999999999999999999998654310 111 112456799999999999999999986
Q ss_pred E
Q 017595 356 E 356 (369)
Q Consensus 356 ~ 356 (369)
.
T Consensus 200 ~ 200 (218)
T PF05891_consen 200 E 200 (218)
T ss_dssp E
T ss_pred c
Confidence 4
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=105.32 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=72.5
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCC-CCCEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIP-KGDAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 277 (369)
..+|||||||+|.++..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ ... ..|+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 57999999999999999999999999999999 666554432 2579999999977 322 249998876 5543
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
..+++.+++.|+|||++++..
T Consensus 122 -----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCCCCEEEEEc
Confidence 357888999999999999764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=109.44 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=97.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-C--CCC-CCEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-R--IPK-GDAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~p~-~D~v~~~~vl 274 (369)
....+|||||||+|.++..+++. ..+++++|. +..++.+++ ..++++...|+.+ + .+. .|+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988876 457888998 676665543 1356777777765 2 222 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh----cCCccCCHHHHHHHHHHcCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF----SGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~t~~e~~~ll~~aGf 350 (369)
++.++ ...+|+.+.+.|+|||++++....... ......... ......... ......+.++|.++++++||
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLNRNL---KSYLLAIVG-AEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecCCCh---HHHHHHHhh-HHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 99865 457899999999999999987643111 000000000 000110000 01234588999999999999
Q ss_pred cceeEEE
Q 017595 351 NGVNYEC 357 (369)
Q Consensus 351 ~~~~~~~ 357 (369)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9998754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-12 Score=112.82 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=79.6
Q ss_pred CCcceEEEEcCChhHHHHH--HHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCCC---CCCEEEe
Q 017595 205 EQIKQLVDVGGGLGVTLNI--ITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERIP---KGDAILM 270 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~p---~~D~v~~ 270 (369)
..+.+|+|||||.|.++.. ++..+|+.+++++|. +.+++.|++ .++++|+.+|..+..+ ..|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999997744333 334689999999999 888776654 1579999999987332 3499999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
. ++|+|+.++..++|+++++.|+|||.+++.-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999987888999999999999999998754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=113.84 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=94.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------CCceEEeCCCCCCCCCCCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----------RGVKHIGGNMFERIPKGDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~~~p~~D~v~~~~v 273 (369)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 468999999 7787765432 2567888887542123499999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC------CccCCHHHHHHHHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG------GRERTTQEFMALANE 347 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~ 347 (369)
++|++++....+++.+.+ +.+|+. +|.. .+.. ........... .+++ ....+.+++++++++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~---~~~~~l~~~g~-----~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT---LYYDILKRIGE-----LFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc---hHHHHHHHHHh-----hcCCCCcCceeeeCCHHHHHHHHHH
Confidence 999998877788888875 455554 4432 1111 00000000000 0111 123479999999999
Q ss_pred cCCcceeEEEecC
Q 017595 348 AGFNGVNYECFVC 360 (369)
Q Consensus 348 aGf~~~~~~~~~~ 360 (369)
+||++.+..-..+
T Consensus 290 AGf~v~~~~~~~~ 302 (315)
T PLN02585 290 AGWKVARREMTAT 302 (315)
T ss_pred CCCEEEEEEEeec
Confidence 9999887655443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=103.48 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=97.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------------------CCCCceEEeCCCCC-CC--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------------------SYRGVKHIGGNMFE-RI-- 262 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~~-- 262 (369)
....+|||+|||.|..+..|+++ +..++++|+ +..++.+. +..+|+++.+|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35579999999999999999986 567999998 66666531 12468999999998 32
Q ss_pred -CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHH
Q 017595 263 -PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 263 -p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 341 (369)
+..|+|+-+.++||++++.....++.+.++|||||++++.....+..... . --...+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 22399999999999999999999999999999999877776654321100 0 0123578899
Q ss_pred HHHHHHcCCcceeEEE
Q 017595 342 MALANEAGFNGVNYEC 357 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~ 357 (369)
.++|.. +|.+.....
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998853 566555443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-11 Score=110.75 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=84.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCC-CEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKG-DAI 268 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~v 268 (369)
-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++.. -..+++..|.+++.++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3344444 23346899999999999999999999999999999 7777766532 23567888887755544 999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWILHNW---DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+++..+|.. ..+...++++++.+.|+|||+++|+..
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999863 234567999999999999999998764
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=99.56 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=76.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCC-CCEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPK-GDAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~ 276 (369)
...+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +... .|+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 468999999999999999999999999999999 777776553 2469999999977 3332 399998752
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.....+++.+++.|+|||++++.+.
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 2345789999999999999998864
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-12 Score=105.69 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=95.0
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCCCCCCC--CEEEecc
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFERIPKG--DAILMKW 272 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~~--D~v~~~~ 272 (369)
.++ -....+++|+|||.|.++..|+.+.. +.+++|. +..++.+++ .++|+++..|+-+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 55668999999999999999999874 5777887 777776653 489999999998866654 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 273 ILHNWDD-EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 273 vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
|+|++++ ++...+++++.++|+|||.|++..... . .. . .=|.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd------~------~c-----~---~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD------A------NC-----R---RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H------H------HH-----H---HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC------C------cc-----c---ccCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999977620 0 00 0 123444677888888764 55
Q ss_pred ceeEEEe
Q 017595 352 GVNYECF 358 (369)
Q Consensus 352 ~~~~~~~ 358 (369)
.++.+..
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 5555444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=111.74 Aligned_cols=105 Identities=15% Similarity=0.270 Sum_probs=82.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-----CCC--ceEEeCCCCCC--CC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-----YRG--VKHIGGNMFER--IP 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~r--v~~~~~d~~~~--~p 263 (369)
..+.+.++ ...+|||+|||+|..+..|+++.+ ..+++++|+ +.+++.+.+ .++ |.++.+|+.+. ++
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 457899999999999999999987 588999999 777766543 233 56789999862 32
Q ss_pred C-----C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 264 K-----G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 ~-----~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
. . .++++..++++++++++..+|++++++|+|||+++|.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 1 3556668999999999999999999999999998863
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-10 Score=101.58 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=91.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hH----HHHhCCCCCCceEEeCCCCCCC------CCCCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PH----VIQNAPSYRGVKHIGGNMFERI------PKGDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~ 271 (369)
+....+|||+|||+|.++..+++.. +.-+++.+|+ +. +++.++..++|.++.+|+..+. +..|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5566899999999999999999986 3557889998 43 5566666689999999987532 223999877
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.. .+ ++...++.++++.|||||+++|......-+..+++. . .+ .+|. ++|+++||+
T Consensus 210 va---~p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe----------~--~f-------~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA---QP-DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPE----------V--VF-------ASEV-QKLKKEGLK 265 (293)
T ss_pred CC---Cc-chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHH----------H--HH-------HHHH-HHHHHcCCc
Confidence 64 22 345567778999999999999942211111110000 0 01 2344 788999999
Q ss_pred ceeEEEec
Q 017595 352 GVNYECFV 359 (369)
Q Consensus 352 ~~~~~~~~ 359 (369)
.++.+.+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99887765
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-11 Score=106.92 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=97.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCC--C-CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIP--K-GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p--~-~D~v~~~~vl 274 (369)
...+|||+|||+|.++..+++..+ +++++|. +.+++.++.. .++.+...|+.+ +.+ . .|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999887654 5888888 6666655431 258888888765 222 3 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH-hhcC-----CccCCHHHHHHHHHHc
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM-QFSG-----GRERTTQEFMALANEA 348 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-----~~~~t~~e~~~ll~~a 348 (369)
|+..+ ...+|+++++.|+|||.+++........ ... .......+.. .... ....+.++|.++++++
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPK---SYL---LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCch---HHH---HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99954 4589999999999999998876532110 100 0000000110 0001 1234788999999999
Q ss_pred CCcceeEEE
Q 017595 349 GFNGVNYEC 357 (369)
Q Consensus 349 Gf~~~~~~~ 357 (369)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=104.65 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=93.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC--CCEEEeccccc-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK--GDAILMKWILH- 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~--~D~v~~~~vlh- 275 (369)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .+++.++.+|++++++. .|+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346999999999999999999999999999998 877776653 24799999999886543 39999854332
Q ss_pred -----cCChhH------------------HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 276 -----NWDDEH------------------CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 276 -----~~~d~~------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
.+..+. ...+++++.+.|+|||++++....
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~--------------------------- 219 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY--------------------------- 219 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------------------------
Confidence 222111 247899999999999998873210
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
...+++.++|+++||+.+++....
T Consensus 220 ---~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 ---DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ---cHHHHHHHHHHhCCCCceEEEeCC
Confidence 124568889999999988886654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=93.11 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=77.5
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC---CCC-C
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER---IPK-G 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~-~ 265 (369)
+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +..++.+++ ..+++++.+|+... .+. .
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444444 44567999999999999999999999999999999 777766543 25789998887641 222 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
|+|++....+. ..++++.+++.|+|||++++.
T Consensus 90 D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 99998765433 358999999999999998874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=100.60 Aligned_cols=150 Identities=18% Similarity=0.191 Sum_probs=96.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC---CCCC--CCEE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+.+.+.++ ...+|||||||+|.++..+++. ...+++++|. +.+++.++. .+++++.+|+.+ +++. .|+|
T Consensus 5 ~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 5 ESILNLIP---PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred HHHHHhcC---CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEE
Confidence 34444443 4579999999999999888765 3567889998 777776653 468888888865 2433 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH---------HHhhcCCccCCHH
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM---------LMQFSGGRERTTQ 339 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~~~t~~ 339 (369)
++.+++||+++ ...+|+++.+.++ .+++.-+.... +...........+ ....+..+..+.+
T Consensus 80 i~~~~l~~~~d--~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 149 (194)
T TIGR02081 80 ILSQTLQATRN--PEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIA 149 (194)
T ss_pred EEhhHhHcCcC--HHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccCCCCcccCcHH
Confidence 99999999955 5678898887655 33332111000 0000000000000 0000123456899
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
++.++++++||++++.....
T Consensus 150 ~~~~ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 150 DFEDLCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHHHHHCCCEEEEEEEec
Confidence 99999999999999886653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=96.42 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=100.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC---CCCC--CEEEeccccccCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER---IPKG--DAILMKWILHNWD 278 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~---~p~~--D~v~~~~vlh~~~ 278 (369)
+...+|||+|||.|.++..|.+. .++++.++++ +.-+..+.+ ..+.++.+|+.+. +|.. |.|+++.+|.++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~- 88 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV- 88 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH-
Confidence 36799999999999999888875 6899999888 554444442 4788999999873 5553 999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhH---------HHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDI---------IMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~---------~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
....++|+++.|. |.+.+|.=+-.. -+..+....+.- ..+..++|-+..|..++++++++.|
T Consensus 89 -~~P~~vL~EmlRV---gr~~IVsFPNFg-----~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~ 159 (193)
T PF07021_consen 89 -RRPDEVLEEMLRV---GRRAIVSFPNFG-----HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG 159 (193)
T ss_pred -hHHHHHHHHHHHh---cCeEEEEecChH-----HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC
Confidence 5566889888776 555554322110 011111111000 0011234566779999999999999
Q ss_pred CcceeEEEecCc
Q 017595 350 FNGVNYECFVCN 361 (369)
Q Consensus 350 f~~~~~~~~~~~ 361 (369)
+++++...+.+.
T Consensus 160 i~I~~~~~~~~~ 171 (193)
T PF07021_consen 160 IRIEERVFLDGG 171 (193)
T ss_pred CEEEEEEEEcCC
Confidence 999999887643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-11 Score=98.21 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=86.4
Q ss_pred EEcch-hHHHHhCCC---------CCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 234 VNFDL-PHVIQNAPS---------YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 234 ~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
+++|. +.+++.+++ ..+++++.+|+.+ +++.. |+|++..++|+++ +..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 36787 778776632 1369999999988 77653 9999999999995 45789999999999999999
Q ss_pred EEeccCCCCCcchHHHhhhhhhh-HHHHHhhcC-----------CccCCHHHHHHHHHHcCCcceeEEEecCcee
Q 017595 301 IIDRMPMVTPEATAAAREASMTD-IIMLMQFSG-----------GRERTTQEFMALANEAGFNGVNYECFVCNFC 363 (369)
Q Consensus 301 i~e~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 363 (369)
|.|...++.........+..... ......... ....+.+++.++|+++||+.++......+.+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 99998654311110000000000 000000000 1235899999999999999998877765433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-11 Score=101.03 Aligned_cols=99 Identities=19% Similarity=0.350 Sum_probs=79.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC-CC-CEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP-KG-DAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~~-D~v~~~~vlh~ 276 (369)
...+|||+|||+|..+..+++++|+.+++.+|. +.+++.++.. .+++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 467999999999999999999999999999999 7777766542 348999999999666 33 99999988876
Q ss_pred CCh---hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 277 WDD---EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 277 ~~d---~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
-.+ +-..++++.+.+.|+|||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 3467999999999999999976543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6e-10 Score=99.69 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=86.6
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC-CC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK-GD 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~D 266 (369)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++.+++. .+..+...|.+++... .|
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 35556676 44445999999999999999999999999999999 6667766653 3336788888886655 49
Q ss_pred EEEeccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 267 AILMKWILHNW---DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 267 ~v~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+|+++--+|.= ...-..++++.+.+.|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999999952 233345899999999999999998765
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-10 Score=97.58 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=96.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------------------CCCCceEEeCCCCCCCC--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------------------SYRGVKHIGGNMFERIP-- 263 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~~~p-- 263 (369)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999986 568999999 66666431 12578999999998322
Q ss_pred --CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC--ccCCHH
Q 017595 264 --KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG--RERTTQ 339 (369)
Q Consensus 264 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~t~~ 339 (369)
..|+|+-+.++|+++.+...++++.+.++|+|||+++++....+.... +| ...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~--------------------~gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL--------------------AGPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC--------------------CCCCCCCCHH
Confidence 239999999999999999999999999999999976655444332210 11 235789
Q ss_pred HHHHHHHHcCCcceeEEE
Q 017595 340 EFMALANEAGFNGVNYEC 357 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~ 357 (369)
++.++|.. +|.+.....
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99999853 366665544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=95.29 Aligned_cols=159 Identities=12% Similarity=0.166 Sum_probs=102.0
Q ss_pred hhhhcCchHHHHHHHHHHh----hhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhC
Q 017595 170 EYAGNDSRFNGVFNKAMLN----HTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNA 245 (369)
Q Consensus 170 e~~~~~~~~~~~~~~~m~~----~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 245 (369)
+.+.++|+....|..+.+. |-.-.++.+++.+...+....|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC----
Confidence 4456677776666666543 33345677777666445668999999999999977542 346777887221
Q ss_pred CCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh
Q 017595 246 PSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT 322 (369)
Q Consensus 246 ~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 322 (369)
+-.++..|+.. |++.. |+++++-.|... +...+|+++.|.|||||.|.|.|....
T Consensus 105 ----n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 ----NPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp ----STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred ----CCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 22477899977 88765 999999888653 467899999999999999999997421
Q ss_pred hHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 323 DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 323 d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
.-+.+++.+.+++-||+..........+.+.++.|
T Consensus 163 ------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 ------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 11466788889999999998776678888887765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-11 Score=103.43 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=80.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCC-CC-C--CCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNM-FE-R--IPK 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~-~~-~--~p~ 264 (369)
.+.+.++ . ...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .+++.++.+|+ .. + ++.
T Consensus 32 ~~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 109 (202)
T PRK00121 32 DWAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD 109 (202)
T ss_pred CHHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence 3444454 2 568999999999999999999999999999999 878776653 26799999999 43 3 443
Q ss_pred C--CEEEeccccccCC------hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 G--DAILMKWILHNWD------DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+ |+|++.+...... ......+|+++++.|+|||++++...
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 3 9998865543211 11236799999999999999998653
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-11 Score=100.12 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=94.9
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC-C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~-D 266 (369)
..+++.++ .-.+.++||+|||.|..+..|+++. ..++.+|. +..++.+.+ .-.|+....|+.+ .+++. |
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 34555555 4467899999999999999999985 56777887 555554332 1248889999988 66655 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+|++..|+++++.+...++++++.+.++|||++++...+..++... ... ....+...|+...+.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~--------~~~--------~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPC--------PSP--------FPFLLKPGELREYYA 160 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS----------SS----------S--B-TTHHHHHTT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCC--------CCC--------CCcccCHHHHHHHhC
Confidence 9999999999999999999999999999999998876653222100 000 122345678888885
Q ss_pred HcCCcceeE
Q 017595 347 EAGFNGVNY 355 (369)
Q Consensus 347 ~aGf~~~~~ 355 (369)
||++++.
T Consensus 161 --dW~il~y 167 (192)
T PF03848_consen 161 --DWEILKY 167 (192)
T ss_dssp --TSEEEEE
T ss_pred --CCeEEEE
Confidence 7887765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=98.29 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=80.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC---------CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER---------IP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p 263 (369)
..++.+.+..++...+|||||||+|.++..++++. +..+++++|+.++ ...+++.++.+|+.+. ++
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhC
Confidence 34555555434566899999999999999999986 4578999999443 2236799999999873 33
Q ss_pred C-C-CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 264 K-G-DAILMKWILHNWDDEH---------CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 264 ~-~-D~v~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
. . |+|++....+....+. ...+|+.+++.|+|||++++..+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3 2 9999987776554321 246899999999999999987543
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-09 Score=94.44 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=112.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCC------CCCc-eEEeCCCCCC--C----CCCCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPS------YRGV-KHIGGNMFER--I----PKGDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~rv-~~~~~d~~~~--~----p~~D~v 268 (369)
..+.+||||.||+|.+....++.+|. .++...|. |.-++..++ ...+ +|..+|.|+. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999998 78888898 555555443 2455 9999999982 2 334999
Q ss_pred EeccccccCChhHHH-HHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC-----ccCCHHHHH
Q 017595 269 LMKWILHNWDDEHCL-TLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG-----RERTTQEFM 342 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~-~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~t~~e~~ 342 (369)
+.+.++..++|.+.+ ..|+.+++++.|||+||-....... ..+.... ... .+.+| +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-----Qle~IAr----~Lt-sHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-----QLEMIAR----VLT-SHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-----chHHHHH----HHh-cccCCCceEEEecCHHHHH
Confidence 999999999997744 5799999999999998876532221 1111111 111 11122 468999999
Q ss_pred HHHHHcCCcceeE-EEecCceeEEEEeC
Q 017595 343 ALANEAGFNGVNY-ECFVCNFCIIEFIK 369 (369)
Q Consensus 343 ~ll~~aGf~~~~~-~~~~~~~~vi~~~~ 369 (369)
+|+++|||+.++. +...+-++|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999997765 33346677777664
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=101.38 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=89.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 277 (369)
...+|||||||+|.++..+++..+. +++++|. +.+++.+++. .++.+..+|. ..|+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH---
Confidence 5689999999999999887765543 6899999 7777766542 2233333221 34999875432
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
+....+++++.+.|+|||++++...... ..+++.+.+++.||+++++..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 3356789999999999999998754311 245678889999999999888
Q ss_pred ecCceeEEEEe
Q 017595 358 FVCNFCIIEFI 368 (369)
Q Consensus 358 ~~~~~~vi~~~ 368 (369)
.....+++.-+
T Consensus 239 ~~~W~~~~~~~ 249 (250)
T PRK00517 239 RGEWVALVGKK 249 (250)
T ss_pred eCCEEEEEEEe
Confidence 87777766543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-10 Score=94.41 Aligned_cols=133 Identities=18% Similarity=0.261 Sum_probs=95.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CC-ceEEeCCCCCCCCC--CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RG-VKHIGGNMFERIPK--GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~~~p~--~D~v~~~~vl 274 (369)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++. ++ +.++.+|+.++++. .|+|++...+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 4579999999999999999988 578899998 7777766321 22 88999999886554 3999887654
Q ss_pred ccCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc
Q 017595 275 HNWD-------------------DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE 335 (369)
Q Consensus 275 h~~~-------------------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 335 (369)
.... ......+++++.+.|+|||++++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------------------- 151 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------------------- 151 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------------------
Confidence 3311 1224578999999999999988764321
Q ss_pred CCHHHHHHHHHHcCCcceeEEEec---CceeEEEEeC
Q 017595 336 RTTQEFMALANEAGFNGVNYECFV---CNFCIIEFIK 369 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~~ 369 (369)
...+++.+++.++||++..+.... ...-+++.+|
T Consensus 152 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 123567889999999988765443 3344555554
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-10 Score=100.40 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=96.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-C-CCEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-K-GDAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~-~D~v~~~~vl 274 (369)
.....+|||+|||+|..+..++..+|+.+++++|. +.+++.+++ ..++.++.+|++++.+ . .|+|++....
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 777665543 2579999999988654 2 3999875321
Q ss_pred ------ccCCh------------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 275 ------HNWDD------------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 275 ------h~~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
+.+.+ +...++++++.+.|+|||++++ +.. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g--~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG--Y---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC--c----------------------
Confidence 11111 2235789999999999999887 220 0
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEe-cCceeEEEEe
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECF-VCNFCIIEFI 368 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 368 (369)
...++|.+++++.||+.+++... .+...++.+.
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01345888999999997777543 3444455444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=95.99 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=99.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC---CCCC--CCEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE---RIPK--GDAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~--~D~v~~ 270 (369)
.....+|||+|||+|..+..++.+.++++++++++ +.+.+.|++. +||++++.|+.. ..+. .|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44579999999999999999999999999999999 7777776542 799999999976 2222 399999
Q ss_pred ccccccCChh----------------HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc
Q 017595 271 KWILHNWDDE----------------HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR 334 (369)
Q Consensus 271 ~~vlh~~~d~----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 334 (369)
+--.+.-++. ....+++.+.+.|||||++.++....
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 8776654433 24578999999999999999876520
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEec
Q 017595 335 ERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
...+|.+++.+.+|...++..+.
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V~ 196 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFVY 196 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEec
Confidence 13468888888899988887664
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=99.45 Aligned_cols=98 Identities=14% Similarity=0.293 Sum_probs=75.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C---CCC-C-CEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R---IPK-G-DAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~---~p~-~-D~v~~~~ 272 (369)
...++||||||+|.++..+++++|+.+++++|. +.+++.+.+ .++++++.+|+.+ . ++. . |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 777766543 2689999999975 2 343 2 7777665
Q ss_pred ccccCChhH-------HHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 ILHNWDDEH-------CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 vlh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..+ |+... ...+++.++++|||||.|++...
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 433 22211 14689999999999999988653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-10 Score=102.04 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=73.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCC---eEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCCC--CEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHI---EGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPKG--DAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~ 277 (369)
...+|||||||+|.++..+++.+|.. .++++|+ +.+++.+++ .+++.+..+|..+ +++.+ |+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 888887754 3789999999887 76653 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+ ..+++++++|||||+++++.+.
T Consensus 161 ~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2367899999999999987653
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=97.04 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=75.1
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEec------
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMK------ 271 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~------ 271 (369)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. .+++++.+|++++++. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 7787766542 3599999999987654 3999875
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 272 -------WILHNWDD----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 272 -------~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+++|-|. +....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333321 1456899999999999997764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=90.16 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=81.6
Q ss_pred HHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCCCE
Q 017595 198 LDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKGDA 267 (369)
Q Consensus 198 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~D~ 267 (369)
+.++. +.+..+++|||||+|..+.+++...|..+++.+|. +..++..+. .++++++.+|.-+ +.+..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 34454 66778999999999999999998899999999998 766665443 3899999999876 3444599
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+.... - ....+|+.+...|||||+|++.-..
T Consensus 106 iFIGGg-~-----~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGG-G-----NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 998887 2 2357999999999999999986554
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.6e-10 Score=96.33 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=75.8
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK-- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-- 264 (369)
.+++.+. .....+|||||||+|..+..+++..+ ..+++++|. +.+++.+++. .+++++.+|+.+.++.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 4445454 45668999999999999999998864 568999999 7777665531 3589999999874432
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++..++++++ +++.+.|+|||+|++.-
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 39999999887764 35678999999998753
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-09 Score=98.55 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=94.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCC--C-CCEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIP--K-GDAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p--~-~D~v~~~~vlh 275 (369)
...+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. .+++++.+|+++ ..+ . .|+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 8888776542 479999999987 333 2 39999865321
Q ss_pred cCCh-----------------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 276 NWDD-----------------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 276 ~~~d-----------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
.-.+ +-.+++++.+.+.|+|||+++ .|.-..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li-lEiG~~------------------------- 384 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL-LEHGFD------------------------- 384 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE-EEECcc-------------------------
Confidence 1000 113477788888999999876 343210
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEE
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEF 367 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~ 367 (369)
..+.+.+++++.||+.+++...- +..-++.+
T Consensus 385 ----Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 385 ----QGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ----HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 14467888899999988876654 33444444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=94.54 Aligned_cols=123 Identities=12% Similarity=0.147 Sum_probs=92.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCC-CCEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPK-GDAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~d~~ 281 (369)
...+|||+|||+|.++..++.+.+..+++++|+ +.+++.+++ .++++++.+|+++ ..+. .|+|++...+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999999887789999999 888887765 3689999999988 3333 39999998888765432
Q ss_pred H------------------HHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 282 C------------------LTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 282 ~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
. .++++.+...|+|+|.+++.= ...+ . + ....+.++++.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y---ss~~----------~--------y--~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY---SGRP----------Y--------Y--DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE---eccc----------c--------c--cccCCHHHHHH
Confidence 2 356677788888998776661 1110 0 0 01136889999
Q ss_pred HHHHcCCc
Q 017595 344 LANEAGFN 351 (369)
Q Consensus 344 ll~~aGf~ 351 (369)
+++++||.
T Consensus 201 ~l~~~g~~ 208 (279)
T PHA03411 201 WSKQTGLV 208 (279)
T ss_pred HHHhcCcE
Confidence 99999986
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=93.95 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-C-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-K- 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~- 264 (369)
..+++.++ .....+|||||||+|.++..+++.. ++.+++++|. +.+++.+++ ..+++++.+|....++ .
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555555 6677899999999999999988875 4578999998 888876654 2579999999987432 2
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++....++.+ +.+.+.|+|||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 39999887766542 35667899999998854
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=99.18 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=75.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEecc---
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMKW--- 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~~--- 272 (369)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|++++++. .|+|++.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 8887766542 4799999999876654 39999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 273 ----------ILHNWDD----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 273 ----------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122111 1236889999999999998874
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=93.72 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=75.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC---
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP--- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--- 263 (369)
..+++.+. .....+|||||||+|.++..+++..+ +.+++++|. +.+++.+++ .++++++.+|..+..+
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 56778999999999999999998865 567899998 888776653 2679999999987332
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 264 KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
..|+|++.....+. .+.+.+.|+|||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 23999988765544 34577899999998875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=100.39 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=79.2
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKG 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~ 265 (369)
.+++.+. ......+||||||+|.++..++.++|+..++++|+ +.++..+.+ .+++.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4444454 23456999999999999999999999999999998 666555432 3689999999853 45544
Q ss_pred --CEEEeccccccCChhH-----HHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 --DAILMKWILHNWDDEH-----CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|.|++.+... |+... ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 8888654322 32221 14789999999999999988654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=90.16 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=73.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC-C-CEEEeccccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK-G-DAILMKWILH 275 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~-D~v~~~~vlh 275 (369)
.....+|||+|||+|.++..++... ..+++++|. +.+++.+++. .++.++.+|+.+.++. . |+|++..-.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4456799999999999999988763 348899998 7777655432 3578899998775443 3 9999874332
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 276 NWDD-------------------EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 276 ~~~d-------------------~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.-++ .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 113568899999999999999876543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-09 Score=90.04 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=73.8
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCC---CCC-CC
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFER---IPK-GD 266 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p~-~D 266 (369)
.+. .....+|||+|||+|.++..++.. .+..+++++|. +.+++.+++ .+++.++.+|+.+. .+. .|
T Consensus 35 ~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 35 KLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 344 556789999999999999999876 46679999999 878775542 25789999998762 222 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+|++... ......+|+.+.+.|+|||++++
T Consensus 114 ~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 114 RIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 9987542 23456899999999999999986
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=92.38 Aligned_cols=101 Identities=15% Similarity=0.244 Sum_probs=76.9
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCC-CC
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIP-KG 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p-~~ 265 (369)
+++.++ .....+|||+|||+|.++..+++..|+.+++++|. +.+++.+++ .++++++.+|+.+ .+. ..
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 344444 55678999999999999999998889999999999 888776653 2578999999865 222 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654421 13356899999999999999998764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=97.62 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=69.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC-CCEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK-GDAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~D~v~~~~vlh~ 276 (369)
...+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .++.+...+.....+. .|+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999888765 4458999999 7777766542 3566666664332233 3999986543
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+....+++++++.|+|||++++....
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 33467899999999999999987653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-08 Score=87.38 Aligned_cols=158 Identities=14% Similarity=0.176 Sum_probs=110.0
Q ss_pred hhhhhcCchHHHHHHHHHHhhh----hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHh
Q 017595 169 YEYAGNDSRFNGVFNKAMLNHT----SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQN 244 (369)
Q Consensus 169 ~e~~~~~~~~~~~~~~~m~~~~----~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 244 (369)
+..+..+|+....|..+.+... ...++.+++.+...+....|.|+|||-+.++... .-.+.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~-----~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSE-----RHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhcc-----ccceeeeeeec----
Confidence 3445667777777776655432 2345666666654457789999999999887621 12455666522
Q ss_pred CCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhh
Q 017595 245 APSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321 (369)
Q Consensus 245 a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 321 (369)
.+-+++.+|+.. |++.. |+++++-.|.. .+...++++++|.|+|||.+.|.|....
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------- 268 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------- 268 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh--------------
Confidence 244678889988 77654 99988877765 3467899999999999999999987421
Q ss_pred hhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 322 TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 322 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
..+...+...+...||.+.+..-....+...++.|
T Consensus 269 -------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11233477778888999888777777777777654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=97.53 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC---CCCC-CCEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE---RIPK-GDAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p~-~D~v~~~~ 272 (369)
+.+.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|..+ ..+. .|+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999887654 2689999999865 2343 49998752
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 273 ILHN--WDDE-HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 273 vlh~--~~d~-~~~~~L~~~~~~L~pgG~lli~e 303 (369)
++. .+.. ....+++++++.|+|||++++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1111 12689999999999999998853
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-09 Score=86.66 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=90.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------C-CCceEEeCCCCCC-CC-CC-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------Y-RGVKHIGGNMFER-IP-KG-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~~-~p-~~-D~v~~~~vl 274 (369)
...+|||+|||+|.++..|++..-.-..+++|. +..++-|+. . +.|+|...|+++| +. .. |+|+=...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999999854445777887 665554442 2 3499999999994 32 22 777544433
Q ss_pred cc------CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 275 HN------WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 275 h~------~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
.. -+.......+..+.+.|+|||+++|..- ..|.+|+.+.++.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcC
Confidence 32 2223335688999999999999998431 13688999999999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||.....+|.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99999888775
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=98.71 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=74.8
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEecc-----
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMKW----- 272 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~~----- 272 (369)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++. ++++++.+|+++.++. .|+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 8888766542 4799999999876553 39999852
Q ss_pred --------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 273 --------ILHNWDD----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 273 --------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+++.|. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246889999999999998876
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=94.37 Aligned_cols=141 Identities=23% Similarity=0.339 Sum_probs=85.5
Q ss_pred CcceEEEEcCC--hhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC----CCC--ceEEeCCCCCC---CC--C--C--C
Q 017595 206 QIKQLVDVGGG--LGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS----YRG--VKHIGGNMFER---IP--K--G--D 266 (369)
Q Consensus 206 ~~~~vLDvG~G--~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~r--v~~~~~d~~~~---~p--~--~--D 266 (369)
+..++|||||| |-..+.+++++ .|+.+++.+|. |.++.+++. .++ ..++.+|+.++ +. . . |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 77899999999 33455666554 89999999999 888887764 245 89999999983 22 1 1 3
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHH
Q 017595 267 -----AILMKWILHNWDD-EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQE 340 (369)
Q Consensus 267 -----~v~~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 340 (369)
.+++..+||+++| ++...+++.++++|.||++|+|...+.+..+. .. .......... ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~--~~---~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE--RA---EALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH--HH---HHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH--HH---HHHHHHHHcC-CCCceecCHHH
Confidence 6899999999987 77899999999999999999999998654321 11 1111222211 22467899999
Q ss_pred HHHHHHHcCCccee
Q 017595 341 FMALANEAGFNGVN 354 (369)
Q Consensus 341 ~~~ll~~aGf~~~~ 354 (369)
+.++|. ||++++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999996 888664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=89.47 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=73.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCCCCC----C-CCEEEeccccc-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFERIP----K-GDAILMKWILH- 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p----~-~D~v~~~~vlh- 275 (369)
...+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .+++++.+|+++.++ . .|+|++.--..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899999999999999999999999999999 8888776643 346899999887432 2 39998774321
Q ss_pred -----cCChh------------------HHHHHHHHHHHhCCCCCEEEEE
Q 017595 276 -----NWDDE------------------HCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 276 -----~~~d~------------------~~~~~L~~~~~~L~pgG~lli~ 302 (369)
..+++ -...+++.+.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 1347888899999999998864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=100.06 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=90.9
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC--CCEEEecc----
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK--GDAILMKW---- 272 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~v~~~~---- 272 (369)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.+++. +++.++.+|+++.++. .|+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 7787766542 5799999999875543 39999842
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 273 ----------ILHNWDD----------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 273 ----------vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
++.+.|. +...++++.+.+.|+|||++++ |....
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~------------------------- 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFK------------------------- 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCc-------------------------
Confidence 1111111 1235688899999999998875 43110
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
..+.+.+++.+.||..+++...-
T Consensus 273 ----q~~~v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 273 ----QEEAVTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred ----hHHHHHHHHHhcCCCceEEEecC
Confidence 14457778888999988876654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-09 Score=79.02 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=75.1
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------CCCCceEEeCCCCCCC---CCC-CEEEeccccccC
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------SYRGVKHIGGNMFERI---PKG-DAILMKWILHNW 277 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~---p~~-D~v~~~~vlh~~ 277 (369)
+++|+|||.|.++..+++ .+..+++++|. +.....++ ...++.+..+|+.+.. +.. |++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999998 66655443 2367899999998832 233 999999999984
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.+....+++.+.+.|+|||++++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467789999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=87.93 Aligned_cols=103 Identities=12% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC---------CCC--
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER---------IPK-- 264 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p~-- 264 (369)
+-+.+.......+|||+|||+|.++..+++++ +..+++++|+.+.. ..+++.++.+|+.++ .+.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 44444445677899999999999999999886 56789999994322 346788999998762 233
Q ss_pred CCEEEeccccc--------cC-ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 GDAILMKWILH--------NW-DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~D~v~~~~vlh--------~~-~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++....| +. ..+....+|+.+++.|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 39999854322 11 01223689999999999999999853
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=89.87 Aligned_cols=147 Identities=20% Similarity=0.236 Sum_probs=98.1
Q ss_pred HHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCce----
Q 017595 181 VFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVK---- 252 (369)
Q Consensus 181 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~---- 252 (369)
.|..+.+..+...++. ++.+. .+..++||||||+|.++++.++... .+++++|+ |..++.+++. .+|.
T Consensus 140 AFGTG~HpTT~lcL~~-Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 140 AFGTGTHPTTSLCLEA-LEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred ccCCCCChhHHHHHHH-HHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 4544444555555533 33332 3778999999999999999887754 46888888 7777766653 3343
Q ss_pred EEeCCCCC-CCC-CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 253 HIGGNMFE-RIP-KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 253 ~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
....+..+ +.. ..|+|+++= |- +-...+...+.+.++|||++++.-....
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------- 267 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGILED----------------------- 267 (300)
T ss_pred cccccchhhcccCcccEEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------
Confidence 22233333 121 239887653 32 2356899999999999999998664311
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEecCceeEE
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECFVCNFCII 365 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi 365 (369)
..+.+.+.+.++||.++++.......++.
T Consensus 268 ------q~~~V~~a~~~~gf~v~~~~~~~eW~~i~ 296 (300)
T COG2264 268 ------QAESVAEAYEQAGFEVVEVLEREEWVAIV 296 (300)
T ss_pred ------HHHHHHHHHHhCCCeEeEEEecCCEEEEE
Confidence 14567778889999999998876666654
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=85.73 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=82.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------------------CCCceEEeCCCCC-CC-C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------------------YRGVKHIGGNMFE-RI-P 263 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~d~~~-~~-p 263 (369)
....+||+.|||.|.-+..|+++. .+++++|+ +..++.+.+ ..+|++.++|+|+ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 355799999999999999999874 56899998 666665311 2579999999998 32 1
Q ss_pred ----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 264 ----KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 264 ----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..|+|+=+.+|++++++...+..+.+.++|+|||+++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2399999999999999999999999999999999999887643
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-09 Score=84.67 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=74.6
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-C--CCCC--CEEEecccc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-R--IPKG--DAILMKWIL 274 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p~~--D~v~~~~vl 274 (369)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+.. |+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 788999998 777665543 2689999999987 3 4433 999998776
Q ss_pred ccCC------hhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWD------DEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~------d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
+... .+....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 1234689999999999999998764
|
... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.5e-09 Score=93.76 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=97.5
Q ss_pred HHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCce
Q 017595 181 VFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVK 252 (369)
Q Consensus 181 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~ 252 (369)
.|..+-+..++..++.+.+ +. .+..+|||||||+|.+++..++... -+++++|+ |..++.++.. +++.
T Consensus 139 AFGTG~H~TT~lcl~~l~~-~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEK-YV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHH-HS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred cccCCCCHHHHHHHHHHHH-hc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 4555555666666655444 32 3457999999999999999888754 37888888 7777766542 3444
Q ss_pred EEeCCCCCCCC--CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 253 HIGGNMFERIP--KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 253 ~~~~d~~~~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
+. . ..+.+ ..|+|+.+-.. +-...++..+.+.|+|||++++.-....
T Consensus 215 v~--~-~~~~~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~----------------------- 263 (295)
T PF06325_consen 215 VS--L-SEDLVEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE----------------------- 263 (295)
T ss_dssp ES--C-TSCTCCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------
T ss_pred EE--E-ecccccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------
Confidence 42 1 12232 23988855432 3456788899999999999998665421
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
..+++.+.+++ ||++++.....+..+++.-+|
T Consensus 264 ------~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 264 ------QEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ------GHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ------HHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 14567777776 999999988888777765443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=87.27 Aligned_cols=143 Identities=20% Similarity=0.297 Sum_probs=91.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------C----------------------
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----------R---------------------- 249 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 249 (369)
+.....+|||||.+|.++..+++.|....+.++|+ +..++.|++. .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55779999999999999999999999889999999 7777777542 0
Q ss_pred --------CceE-------EeCCCCC-CCCCCCEEEec----cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 250 --------GVKH-------IGGNMFE-RIPKGDAILMK----WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 250 --------rv~~-------~~~d~~~-~~p~~D~v~~~----~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
++.+ ...||.+ ..+..|+|+|- +|=-+|.|+-...+|+++++.|.|||+|+ +|+-.-..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQpWks 214 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQPWKS 214 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-EcCCchHH
Confidence 1222 2223333 23445887554 33335788999999999999999999766 55432211
Q ss_pred CcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc--CCccee
Q 017595 310 PEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA--GFNGVN 354 (369)
Q Consensus 310 ~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 354 (369)
+........ ......---...++.+..++.+. ||+-++
T Consensus 215 -----Y~kaar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 -----YKKAARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -----HHHHHHHHH--HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 111111111 11011112234688888888776 565443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-08 Score=91.29 Aligned_cols=120 Identities=15% Similarity=0.023 Sum_probs=86.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCC-C-CEEEeccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPK-G-DAILMKWI 273 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~-~-D~v~~~~v 273 (369)
++...+|||+|||+|.++.+.+.. ..+++++|. +.++..++. .+++.+..+|+.+ +.+. . |+|++...
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 556789999999999999886654 568899998 777765443 1458899999988 5543 3 99998532
Q ss_pred cc-------cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 274 LH-------NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 274 lh-------~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
.. +...+...++|+.+++.|+|||++++.-+.. .+|.++++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------------------------~~~~~~~~ 305 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------------------------IDLESLAE 305 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------CCHHHHHh
Confidence 21 1111335789999999999999998865321 13556788
Q ss_pred HcCCcceeEEEe
Q 017595 347 EAGFNGVNYECF 358 (369)
Q Consensus 347 ~aGf~~~~~~~~ 358 (369)
++|| ++.....
T Consensus 306 ~~g~-i~~~~~~ 316 (329)
T TIGR01177 306 DAFR-VVKRFEV 316 (329)
T ss_pred hcCc-chheeee
Confidence 8999 7776654
|
This family is found exclusively in the Archaea. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-08 Score=87.15 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=98.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeC-CCCCCC-C-CCCEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGG-NMFERI-P-KGDAI 268 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~-d~~~~~-p-~~D~v 268 (369)
+.+...+ .....++||+|||||.++..|..... +.+++|+ ..|++.+.+. +.+..-.. +|..+. + ..|+|
T Consensus 116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred HHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccch
Confidence 3444443 33478999999999999999887754 4678888 7888887754 22211111 233322 2 24999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
....||-++ -....++--+...|+|||.+.+.-...++.... ... .......+..-+..+++..
T Consensus 193 ~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--------~l~------ps~RyAH~~~YVr~~l~~~ 256 (287)
T COG4976 193 VAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGF--------VLG------PSQRYAHSESYVRALLAAS 256 (287)
T ss_pred hhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCe--------ecc------hhhhhccchHHHHHHHHhc
Confidence 999999999 446789999999999999998876655543111 000 0011123566788999999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||+++++.++.
T Consensus 257 Gl~~i~~~~tt 267 (287)
T COG4976 257 GLEVIAIEDTT 267 (287)
T ss_pred CceEEEeeccc
Confidence 99999997764
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=85.91 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=88.4
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCCC-CEEEeccc--ccc--
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPKG-DAILMKWI--LHN-- 276 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~v~~~~v--lh~-- 276 (369)
+|||+|||+|..+..++..+|++++++.|+ |..++.|+.. .++.++.+|+|++.... |+|+++-- =..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 8888776542 45667777999876644 98877621 111
Q ss_pred -CCh------------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCC
Q 017595 277 -WDD------------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERT 337 (369)
Q Consensus 277 -~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 337 (369)
..+ +-..+++..+.+.|+|||.+++ |.... .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~-----------------------------q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT-----------------------------Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC-----------------------------c
Confidence 100 1355788889999999886664 33211 1
Q ss_pred HHHHHHHHHHcC-CcceeEEEecC
Q 017595 338 TQEFMALANEAG-FNGVNYECFVC 360 (369)
Q Consensus 338 ~~e~~~ll~~aG-f~~~~~~~~~~ 360 (369)
.+.+.++|.+.| |..+.+.....
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~ 266 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLF 266 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCC
Confidence 556888999999 66666655543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=92.43 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=74.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCC--CC-C-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFER--IP-K-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~--~p-~-~D~v 268 (369)
+++.+||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|...- .+ . .|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3568999999999999999997655568999999 888877654 36899999998762 22 2 3999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 017595 269 LMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 269 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 302 (369)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433222221 357899999999999988865
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=86.82 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC---C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK---G 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~---~ 265 (369)
.++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ..+++++.+|..+.++. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4444454 56678999999999999988777753 6888887 777766543 25699999998775432 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776654 3456789999999988644
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=86.93 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=69.8
Q ss_pred CcceEEEEcCChhHH----HHHHHHh----CC-CCeEEEcch-hHHHHhCCCC---------------------------
Q 017595 206 QIKQLVDVGGGLGVT----LNIITSR----YP-HIEGVNFDL-PHVIQNAPSY--------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~----~~~l~~~----~p-~~~~~~~D~-~~~~~~a~~~--------------------------- 248 (369)
+..+|...||++|.- ++.+.+. .+ ++++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 668999999999963 3333441 12 467889998 7888876531
Q ss_pred -------CCceEEeCCCCC-CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 -------RGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 -------~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+|.|...|+.+ +.+. . |+|+|++||-+++++...+++++++++|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 469999999999 3332 3 999999999999999999999999999999999998643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.5e-09 Score=67.36 Aligned_cols=51 Identities=51% Similarity=0.832 Sum_probs=42.7
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLV 93 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~ 93 (369)
.+|++|++|||||.|.+.| +++.|.+||+.++...+|.++..+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999875 46999999999999436667889999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.8e-08 Score=84.45 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=96.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC---CC---------------CCCceEEeCCCCC-CCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA---PS---------------YRGVKHIGGNMFE-RIP 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~---------------~~rv~~~~~d~~~-~~p 263 (369)
.....+||..|||.|.-+..|+++. .+++++|+ +..++.+ .. ..+|++.++|||+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4566899999999999999999874 68999999 6666654 11 1468999999999 322
Q ss_pred C---CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc--cCCH
Q 017595 264 K---GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR--ERTT 338 (369)
Q Consensus 264 ~---~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~t~ 338 (369)
. .|+|+=+..|+.++++...+..+.+.++|+|||+++++....+.... .|. ..+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------~GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------EGPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------SSSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------CCcCCCCCH
Confidence 2 39999999999999999999999999999999995554443322110 111 2368
Q ss_pred HHHHHHHHHcCCcceeEEE
Q 017595 339 QEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~ 357 (369)
+++.++|. .+|++.....
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 7888776654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=84.54 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=77.0
Q ss_pred CcceEEEEcCChhHH----HHHHHHhCC----CCeEEEcch-hHHHHhCCCC----------------------------
Q 017595 206 QIKQLVDVGGGLGVT----LNIITSRYP----HIEGVNFDL-PHVIQNAPSY---------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~----~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 248 (369)
+..+|...||++|.- ++.+.+..+ ++++++.|+ +.+++.|+.-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999963 333444332 467899998 7777765421
Q ss_pred ---------CCceEEeCCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 249 ---------RGVKHIGGNMFE-RIP--KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 249 ---------~rv~~~~~d~~~-~~p--~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+|.|..+|+.+ ++| .. |+|+|++||.|++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 357999999998 554 33 99999999999999999999999999999999888754
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-08 Score=90.35 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=74.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------------CCCceEEeCCCCCC---CCC-CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------------YRGVKHIGGNMFER---IPK-GD 266 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p~-~D 266 (369)
.++.+||+||||.|..+..+++..+..+++.+|+ +.+++.|+. .+|++++.+|..+- .+. .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4678999999999999999997666678999999 888887763 37999999999862 222 39
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 267 AILMKWILH---NWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 267 ~v~~~~vlh---~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
+|++...-. ....--...+++.+++.|+|||.+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999873210 0111123579999999999999988764
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.9e-08 Score=83.57 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=91.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCC-CCEEEeccccccCChhHHHH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPK-GDAILMKWILHNWDDEHCLT 284 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~d~~~~~ 284 (369)
...++||||.|.|..+..++..|.++.++....+. ..+.++ .+.+++..|-....+. .|+|.|-++|-.. +....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-r~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-RWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-HHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhcc--CCHHH
Confidence 45789999999999999999999987777766444 333332 3445554443332232 3999999999888 55679
Q ss_pred HHHHHHHhCCCCCEEEEEeccCC-----CCC--cchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 285 LLKNCYEAIPENGKIIIIDRMPM-----VTP--EATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 285 ~L~~~~~~L~pgG~lli~e~~~~-----~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
+|+.++++|+|+|++++.=..+- ... ...+.+ . +-..+...+-..+.+.+.|+.+||+++++..
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~-----l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----L-----LPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----h-----cCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999998887543221 100 001110 0 0001011111233344889999999999987
Q ss_pred ec
Q 017595 358 FV 359 (369)
Q Consensus 358 ~~ 359 (369)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 65
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.7e-08 Score=89.26 Aligned_cols=99 Identities=19% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC--CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+++.+||+||||.|.++.++++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999986633357888898 777776654 2689999999754 3332 4999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 269 LMKWILHNWDDE--HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 269 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e 303 (369)
++-..-...+.. -...+++.++++|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 875433322211 13578999999999999987654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=93.44 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC-------------CCCceEEeCCCCC---CCCC-C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS-------------YRGVKHIGGNMFE---RIPK-G 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~---~~p~-~ 265 (369)
+++++|||||||+|..+.++++ +|. .+++.+|+ +.+++.+++ .+|++++.+|.++ ..++ .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999986 455 68999999 889887765 1689999999876 2233 3
Q ss_pred CEEEeccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 DAILMKWILHNWDDE---HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 D~v~~~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+|++...-...+.. -..++++++++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987443221111 12468999999999999988764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.9e-08 Score=87.30 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=73.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~v~ 269 (369)
+.+.+||+||||+|.++..+++..+..+++.+|+ +.+++.+++ .++++++.+|.++- .++ .|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3556999999999999999988766668888888 777776543 25788998887651 233 39999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCCEEEEE
Q 017595 270 MKWILHNWDDEH--CLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 270 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~ 302 (369)
+...-..-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 468899999999999998876
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=87.98 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=73.1
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC---C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP---K 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~ 264 (369)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4444444 556689999999999999999998764 46888898 777765543 2579999999876332 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 3999988665544 234667899999988853
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=77.77 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=81.4
Q ss_pred CcceEEEEcCChhH----HHHHHHHhCC-----CCeEEEcch-hHHHHhCCCC---------------------------
Q 017595 206 QIKQLVDVGGGLGV----TLNIITSRYP-----HIEGVNFDL-PHVIQNAPSY--------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 248 (369)
+..+|.-.||++|. +++.+.+.+| .+++++-|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 5666667775 478888898 7788776531
Q ss_pred --------CCceEEeCCCCCC--CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 --------RGVKHIGGNMFER--IPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 --------~rv~~~~~d~~~~--~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..|.|..+|..++ .+.. |+|+|++||=+++.+.-.+++++.+..|+|||.|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 2589999999983 3444 999999999999999999999999999999999998543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=79.09 Aligned_cols=100 Identities=15% Similarity=0.264 Sum_probs=78.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK-- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~-- 264 (369)
...++..+. .+...+|||||||+|..+.-+++... +++.+++ +...+.|++ +.+|.++.+|-...+|.
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345556565 77889999999999999999998875 7777887 777777764 36799999999987665
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|.|+.....-..|+ .+.+-|+|||++++-..
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 399988877666643 24558999999999776
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-07 Score=80.75 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=73.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCC---------CCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERI---------PKG 265 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~---------p~~ 265 (369)
..+.++|||||||+|..+.+++...+ +.+++.+|. +...+.+++. ++++++.+|+.+-+ +..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34678999999999999999988765 679999998 7777766542 68999999997621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+|++-. ..+.-..++..+.+.|+|||.+++-+..
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9997743 2344568899999999999976664443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=79.60 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=85.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER-IP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~-~p 263 (369)
...|..... +....+|+|.|.|+|.++..|+.. .|.-+++.++. +..++.|++. ++|++..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 446666665 888899999999999999999974 78889999998 8888887653 5699999999884 33
Q ss_pred CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 264 KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 264 ~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.. |+|++ ++|+ .-.++.++.++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 33 88875 4544 45889999999999999999887653
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=80.92 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=69.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCC--CCC----CC---CCC-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGN--MFE----RI---PKG-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d--~~~----~~---p~~-D~v~~~~vl 274 (369)
....++|||||+|..++.+++.|.+ +++.|. +.+++.+++++++.....- +.+ ++ ++. |+|++...+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 3458999999999888888888765 677788 8999999987655433321 111 12 233 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|.++- .++.+.+++.|||.|.++.+-.
T Consensus 111 HWFdl---e~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 111 HWFDL---ERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred Hhhch---HHHHHHHHHHcCCCCCEEEEEE
Confidence 98843 5789999999998775544433
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=78.95 Aligned_cols=104 Identities=13% Similarity=0.240 Sum_probs=70.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC--C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG--D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 266 (369)
+.+++.++ +.+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 35556565 666789999999999999999988 457888887 666665543 3689999999988 55543 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+++- -++.+.+...++++.. .+.++|.+++...
T Consensus 80 ~vi~n~-Py~~~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNL-PYNISTPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred EEEECC-CcccHHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 776654 4445444333444321 1346777766544
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-08 Score=82.94 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=74.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~- 264 (369)
...+++.+. +....+|||||||+|.++.-++... +.-+++.+|. +...+.+++. .+|.++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 446666676 7788999999999999999999885 4446888888 8877777642 5899999999875553
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|.|++.......|. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887765532 25567899999998544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-07 Score=78.54 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=71.3
Q ss_pred cceEEEEcCChhHHHHHHHHhC---CCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCC-CCEEEeccccccCCh
Q 017595 207 IKQLVDVGGGLGVTLNIITSRY---PHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPK-GDAILMKWILHNWDD 279 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~d 279 (369)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++.. .++.++.+|+.. ++.. .|+|+++--.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 8888877654 679999999986 4433 399998876663321
Q ss_pred ----------hHHHHHHHHHHHhCCCCCEEEE
Q 017595 280 ----------EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 280 ----------~~~~~~L~~~~~~L~pgG~lli 301 (369)
.-...+++++.++++||+ +|+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 124568999999777766 443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-07 Score=92.75 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=86.6
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------------------CCCceEEeCCCCCCCC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------------------YRGVKHIGGNMFERIP 263 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~rv~~~~~d~~~~~p 263 (369)
..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.++. .+||+++.+|+++.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999999999999 877776521 1479999999988553
Q ss_pred C----CCEEEeccc--c--------------------ccC-------C---hhH----HHHHHHHHHHhCCCCCEEEEEe
Q 017595 264 K----GDAILMKWI--L--------------------HNW-------D---DEH----CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 264 ~----~D~v~~~~v--l--------------------h~~-------~---d~~----~~~~L~~~~~~L~pgG~lli~e 303 (369)
. .|+|+++-- . |.+ . +++ .+++++.+.+.|+|||+++ .|
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-FN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-EE
Confidence 2 388876521 1 100 0 011 2678888888999999666 55
Q ss_pred ccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH-HHHHHcCCcceeEEEec
Q 017595 304 RMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM-ALANEAGFNGVNYECFV 359 (369)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~~ 359 (369)
.-.. ..+.+. ++|++.||+.++++...
T Consensus 278 iG~~-----------------------------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 278 MGGR-----------------------------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred ECcc-----------------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 4311 133466 57788888887776543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-07 Score=85.05 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=69.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----------------CCceEEeCCCCCC-----C-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------------RGVKHIGGNMFER-----I- 262 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------~rv~~~~~d~~~~-----~- 262 (369)
...+|||+|||.|+=+.-...... -.++++|+ +..++.|+++ -...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 568999999998876655555422 36788998 6666655431 1257788888752 2
Q ss_pred CC--C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 263 PK--G-DAILMKWILHNW--DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 263 p~--~-D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+. . |+|.+.+.||+. +.+.++.+|+++.+.|+|||++|..-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999985 677788999999999999999998655
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9e-07 Score=85.73 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=75.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCC---CC-C-CCEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFER---IP-K-GDAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p-~-~D~v~~~~ 272 (369)
.....+|||+|||+|..+..+++..++.+++++|. +..++.+++. -+++++.+|..+. .+ . .|.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45668999999999999999999988889999999 7777766532 2478899999762 22 2 39988422
Q ss_pred ------cccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 273 ------ILHN-------WDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 273 ------vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++.+ ...++ ..++|+++.+.|||||++++.....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2211 11121 2479999999999999999877544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=85.26 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=78.5
Q ss_pred HhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C-CceEEeCCCCC-CC--C-C-C
Q 017595 199 DSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R-GVKHIGGNMFE-RI--P-K-G 265 (369)
Q Consensus 199 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~-~~--p-~-~ 265 (369)
..++ .....+|||+|||+|..+..+++..++.+++++|. +..++.+++. . ++.+..+|... +. + . .
T Consensus 232 ~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 232 TWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccccc
Confidence 3344 45568999999999999999999988789999999 7777655432 1 23446677664 22 2 2 3
Q ss_pred CEEEe------ccccccCChh--------------HHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 266 DAILM------KWILHNWDDE--------------HCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 266 D~v~~------~~vlh~~~d~--------------~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
|.|++ ..++++.|+- ...++|+++++.|||||+|+........
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99885 2466655431 1358999999999999999998776643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=79.30 Aligned_cols=96 Identities=19% Similarity=0.379 Sum_probs=67.9
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------CCCCceEEeCCCCCC----CCCC--CEEEecccc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------SYRGVKHIGGNMFER----IPKG--DAILMKWIL 274 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~----~p~~--D~v~~~~vl 274 (369)
..+||||||.|.++..++..+|+..++|+|. ...+..+. ..+++.++.+|+..- ++.+ |-|++.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 4999999999999999999999999999998 55555443 248999999998771 3323 554433221
Q ss_pred ccCChhH-------HHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
-|+... ...+|+.+++.|+|||.|.+..-
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 122111 34899999999999999987653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6e-07 Score=76.11 Aligned_cols=94 Identities=15% Similarity=0.283 Sum_probs=69.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCC--ceEEeCCCCC--CCCCC--CEEEeccccc---
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRG--VKHIGGNMFE--RIPKG--DAILMKWILH--- 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~r--v~~~~~d~~~--~~p~~--D~v~~~~vlh--- 275 (369)
...-|||||||+|..+..+.+.. ...+++|+ |.|++.+.+. . =.++-+|+-+ |++.+ |-+|....+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~-e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER-ELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh-hhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 46899999999999988887654 67899999 9999988752 2 2577778777 44444 7665544433
Q ss_pred ------cCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 276 ------NWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 276 ------~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
|.|......++..++.+|++|++.++.
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 234444567899999999999998864
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=85.10 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=74.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC---CCC-CCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER---IPK-GDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~-~D~v~~~ 271 (369)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+++++.+|+.+. ++. .|+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999886 6789999999 777765543 14689999999762 333 3999864
Q ss_pred c------ccccCC-------hhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 W------ILHNWD-------DEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ~------vlh~~~-------d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
- ++.+.| ..+ ...+|+.+.+.|||||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 2 222111 111 2468999999999999998655443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-06 Score=70.74 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=89.0
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CCCC-----CCEEEeccccccCChh
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RIPK-----GDAILMKWILHNWDDE 280 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~-----~D~v~~~~vlh~~~d~ 280 (369)
..++|||||=+....+. .++-..++-+|+.+. .-.+...||++ |+|. .|+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999864443333 344556788887221 22467889998 7773 2999999999999866
Q ss_pred H-HHHHHHHHHHhCCCCCE-----EEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 281 H-CLTLLKNCYEAIPENGK-----IIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 281 ~-~~~~L~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
. .-++|+++++.|+|+|. |+|+-+.. +..|.+-.+.+.|.++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~----------------------Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP----------------------CVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch----------------------HhhcccccCHHHHHHHHHhCCcEEEE
Confidence 5 45999999999999999 77764321 11277778899999999999999998
Q ss_pred EEEec
Q 017595 355 YECFV 359 (369)
Q Consensus 355 ~~~~~ 359 (369)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 75543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=70.11 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=87.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhC-CCCCCceEEeCCCCC-C--CC---C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNA-PSYRGVKHIGGNMFE-R--IP---K 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a-~~~~rv~~~~~d~~~-~--~p---~ 264 (369)
.+...+.++ +....-|||+|.|+|.++.+++++. ++-+.+.++. ++..... +.++.+.++.||.++ . .. .
T Consensus 37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 344455555 7788899999999999999999883 4555666665 5555544 446889999999987 3 22 2
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|.|++.--+-.+|-....++|+++...|++||.++-....
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 29999999999999888999999999999999998877665
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=83.90 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=76.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C----CC-C-CCEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R----IP-K-GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~----~p-~-~D~v 268 (369)
.....+|||+|||+|..+..+++... ..+++.+|. +..++.+++. .+|+++.+|..+ + .. . .|.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 44568999999999999999998864 468999998 7777665432 568999999876 3 11 2 3999
Q ss_pred Eec------cccccCChh-------H-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LMK------WILHNWDDE-------H-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~------~vlh~~~d~-------~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++. .++++.++. + -.++|+++.+.|||||+|+...-..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 863 355554431 1 3588999999999999998776544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3e-06 Score=82.59 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=75.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC-C-CCEEEec--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP-K-GDAILMK-- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~D~v~~~-- 271 (369)
.....+|||+|||+|..+..+++..+ ..+++++|. +..++.+++. .+|+++.+|+.+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44567999999999999999888754 458999999 7777765532 468999999877323 2 3999852
Q ss_pred ----ccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 272 ----WIL-------HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 272 ----~vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.++ ++++.++ -.++|.++.+.|+|||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 1223222 23689999999999999998776553
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.6e-07 Score=85.61 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=81.0
Q ss_pred ChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCc---CCcceEEEEcCChhHHHHHHHHhC----CCCeEEEcch-
Q 017595 167 GVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGF---EQIKQLVDVGGGLGVTLNIITSRY----PHIEGVNFDL- 238 (369)
Q Consensus 167 ~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 238 (369)
..|+-+++|+..-..|.+++.. .+.+..... .+...|+|||||+|-++...++.. ...+++.++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3577888898777777776532 233322211 135789999999999987766553 3567888876
Q ss_pred hHHHHhC----C--C-CCCceEEeCCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 239 PHVIQNA----P--S-YRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 239 ~~~~~~a----~--~-~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
|...... + . .++|+++.+|+.+ ..|.. |+|++-..=.....|-...+|....+.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433222 1 1 2789999999999 66765 99987766554444556678888899999998655
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-06 Score=75.35 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=67.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---------------CCCceEEeCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---------------YRGVKHIGGNM 258 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 258 (369)
..+++.+. +.+...++|||||.|......+..++--+.+|+++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35555565 67788999999999999988887765445888887 655543321 25689999999
Q ss_pred CC-C-----CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 259 FE-R-----IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 259 ~~-~-----~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
.+ + +.++|+|++++.. |+++ ...-|++....||||.++|....+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 87 3 2346999999876 4444 4555677888899999988776666543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=77.47 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=74.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhH-HHHhCCCC--------C----CceEEeCCCCC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPH-VIQNAPSY--------R----GVKHIGGNMFE-R 261 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~--------~----rv~~~~~d~~~-~ 261 (369)
.++..+. +....++|+|||-|+=+...-++.- -.+++.|+++ .++.|+++ + .+.|+.+|-+. .
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3444442 4567899999999887666654421 1478999944 47766642 1 36788888765 1
Q ss_pred ----C----CCCCEEEecccccc-C-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 262 ----I----PKGDAILMKWILHN-W-DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 262 ----~----p~~D~v~~~~vlh~-~-~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+ |..|+|.+.+++|+ | +.+.++.+|+++.+.|+|||.+|-.
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 2 22499999999997 3 5677889999999999999988754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=74.02 Aligned_cols=96 Identities=18% Similarity=0.356 Sum_probs=69.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC--C--CCCC--CEEEeccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE--R--IPKG--DAILMKWI 273 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~--~p~~--D~v~~~~v 273 (369)
...+||||||.|.++..+++++|+..++|++. ..++..+.+ .+++.++++|... + ++.+ |-|++.+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 36899999999999999999999999999998 444443322 2589999999876 2 3442 55544332
Q ss_pred cccCChhH-------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 274 LHNWDDEH-------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 274 lh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e 303 (369)
--|+... ...+|+.+.+.|+|||.|.+..
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 1122111 2379999999999999998764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=76.24 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p 263 (369)
+..|+..++ +....+|||.|.|+|.++..|+.. .|.-+++-+|. +..++.|++. ++|++...|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 345566666 778899999999999999999976 78889999998 7777766542 689999999975 343
Q ss_pred ----CC-CEEEeccccccCChhHHHHHHHHHHHhC-CCCCEEEEEeccC
Q 017595 264 ----KG-DAILMKWILHNWDDEHCLTLLKNCYEAI-PENGKIIIIDRMP 306 (369)
Q Consensus 264 ----~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L-~pgG~lli~e~~~ 306 (369)
.. |.|++ ++|++. ..+..+.++| +|||++.+.-++.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCH
Confidence 22 87765 454443 6789999999 8999999987764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.1e-06 Score=79.87 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=74.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C-C-CC-CCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R-I-PK-GDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~-~-p~-~D~v~~~ 271 (369)
.....+|||+|||+|..+..+++.. +..+++.+|. +..++.+++. .+++++.+|..+ + . ++ .|.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4566799999999999999999886 4678999999 7777765532 468899999875 2 2 22 3998762
Q ss_pred ------ccccc-------CChh-------HHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 272 ------WILHN-------WDDE-------HCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 272 ------~vlh~-------~~d~-------~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.++.. ++.+ .-.++|.++.+.|||||+++...-...
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 22222 2211 125789999999999999877665543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=75.82 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----------CCceEEeCCCCC---CCCC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------RGVKHIGGNMFE---RIPK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~---~~p~-~D~v~ 269 (369)
+.+++||-||+|.|.++.++++..+--+++.+|+ +.+++.++++ +|++++.+|..+ ..+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3557999999999999999999998889999999 9999877652 799999999877 3444 49998
Q ss_pred eccccccCChhH---HHHHHHHHHHhCCCCCEEEEE
Q 017595 270 MKWILHNWDDEH---CLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 270 ~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~ 302 (369)
+-..=. ..+.+ ...+++.|+++|+|+|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 765422 11100 258999999999999988887
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=73.14 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=73.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CC--CCCCEEEec-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RI--PKGDAILMK- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~--p~~D~v~~~- 271 (369)
.....+|||+|||+|..+..+++...+ ..++.+|. +..++.+++ ..+|.++..|... +. +..|.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 345679999999999999999988653 58999998 777765543 2568889888765 22 234988762
Q ss_pred -----ccccc-------CChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 -----WILHN-------WDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 -----~vlh~-------~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.++.. +.+++ ..++|+++.+.|||||+|+...-..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 12221 22222 2469999999999999998665544
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=74.47 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=61.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKGD- 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D- 266 (369)
...+++.++ ..+..+|||||||+|.++..++++++. ++++|. +.+++.++. .++++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 345555555 566789999999999999999999875 666666 555554432 3689999999988 555334
Q ss_pred -EEEeccccccCChhHHHHHHHHHHH
Q 017595 267 -AILMKWILHNWDDEHCLTLLKNCYE 291 (369)
Q Consensus 267 -~v~~~~vlh~~~d~~~~~~L~~~~~ 291 (369)
.++.++.-++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3444444444543 44555443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.4e-06 Score=74.85 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC----CCCeEEEcch-hHHHHhCC------CCCCceE--EeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY----PHIEGVNFDL-PHVIQNAP------SYRGVKH--IGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~------~~~rv~~--~~~d~~~ 260 (369)
...+.+.++ ....|+|+|||+|.=+..|++.. ..++++.+|+ ...++.+. ..+.+.+ +.+|+.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 345555554 45689999999998777766664 3467999998 55555432 2366666 7889866
Q ss_pred C---CC-----C-CCE-EEeccccccCChhHHHHHHHHHHH-hCCCCCEEEEE
Q 017595 261 R---IP-----K-GDA-ILMKWILHNWDDEHCLTLLKNCYE-AIPENGKIIII 302 (369)
Q Consensus 261 ~---~p-----~-~D~-v~~~~vlh~~~d~~~~~~L~~~~~-~L~pgG~lli~ 302 (369)
. ++ . ..+ +++-.++.+++++++..+|+++++ .|+||+.|+|-
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2 22 1 244 566689999999999999999999 99999988873
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=71.74 Aligned_cols=99 Identities=11% Similarity=0.161 Sum_probs=77.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEe-CCCCCCC----CC-CCEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIG-GNMFERI----PK-GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~-~d~~~~~----p~-~D~v 268 (369)
..+.++|||||.+.|..+.+++...| +.+.+-+|. ++..+.|++. ++|+++. +|..+.+ .+ .|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999999999 889999999 8888877653 6688888 5876622 12 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
++-. ...+-.++|..+.+.|+|||.+++-+...+
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 8654 345556899999999999996665444443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=71.16 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC---------CCCCceEEeCCCCCCC-----C-C-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP---------SYRGVKHIGGNMFERI-----P-K-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~rv~~~~~d~~~~~-----p-~-~D~v 268 (369)
....+|||+|||+|..+..++...+..+++.-|.+.+++..+ ...++.+...|..++. . . .|+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 356899999999999999999887777888888855655322 1267888888876522 2 2 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+.+.++|+- +....+++.+.+.|+|+|.+++....+
T Consensus 124 lasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 124 LASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999864 778899999999999999888777654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.8e-06 Score=73.94 Aligned_cols=112 Identities=13% Similarity=0.328 Sum_probs=78.7
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC----CCceE--EeCCCCC---CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY----RGVKH--IGGNMFE---RI 262 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~rv~~--~~~d~~~---~~ 262 (369)
+.++...++.+ .+.+|||+|+|.|..+-++.+.++.+ +++.+|. +.+.+.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 44555555533 45799999999999888888888754 5789998 7776654431 11111 1112221 33
Q ss_pred CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 263 PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 263 p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+..|+|+++++|..++++....+++++.+.+.+ .|||+|+-.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 345999999999999988888999999888776 99999986554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.8e-06 Score=73.70 Aligned_cols=98 Identities=14% Similarity=0.099 Sum_probs=74.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCC--------C-CC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERI--------P-KG 265 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~--------p-~~ 265 (369)
..+.++|||||+++|..+.+++...| +.+++.+|. +...+.|++. ++|+++.||+.+-+ . ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 44679999999999999999998865 567888888 7766666542 68999999987621 1 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+|++-. +...-..+++.+.+.|+|||.+++-+...
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 8887654 34566789999999999999766544433
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=74.49 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=91.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEe----CCCCCCC--CC--CCEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIG----GNMFERI--PK--GDAI 268 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~----~d~~~~~--p~--~D~v 268 (369)
...++||||||+|....-++.+.++++++++|+ +..++.|+.. ++|+++. .+++..+ +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999998888888889999999999 7777766531 3677754 2334332 22 3999
Q ss_pred EeccccccCChhH---HHHHHHHHH----------------HhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh
Q 017595 269 LMKWILHNWDDEH---CLTLLKNCY----------------EAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ 329 (369)
Q Consensus 269 ~~~~vlh~~~d~~---~~~~L~~~~----------------~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 329 (369)
+++--+|.-..+. ...-.+++. +++-+||.+-++..+..+.. .+..- ...+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~------~~~~~-~gwft-- 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK------AFAKQ-VLWFT-- 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH------HHHhh-CcEEE--
Confidence 9999887643331 111222222 33346666655555443310 00000 00011
Q ss_pred hcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 330 FSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 330 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
+.-++.-+.+.+.+.|++.|.+.++++.+.
T Consensus 265 smv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 265 SLVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred EEeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 113566689999999999999888887764
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-06 Score=74.48 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC-------C--CCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI-------P--KGD 266 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-------p--~~D 266 (369)
.++++|||||+++|..+.++++..| +.+++-+|. |...+.|++ .++|+++.+|..+-+ + ..|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3678999999999999999999887 589999998 777776654 268999999997521 1 239
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|++-. ...+-...++.+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998765 34556788999999999999666555443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.8e-06 Score=76.45 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=71.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCCC---CC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFERI---PK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~---p~-~D~v~~ 270 (369)
.+.+||.||||.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|.+.-+ ++ .|+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 568999999999999999998766678999999 888887764 268999999988722 22 399987
Q ss_pred ccccccCC--hh---HHHHHHH-HHHHhCCCCCEEEEE
Q 017595 271 KWILHNWD--DE---HCLTLLK-NCYEAIPENGKIIII 302 (369)
Q Consensus 271 ~~vlh~~~--d~---~~~~~L~-~~~~~L~pgG~lli~ 302 (369)
-.. ..+. .. -...+++ .+.+.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 631 1110 00 0246787 899999999987764
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.8e-06 Score=74.33 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=78.6
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEe
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILM 270 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~ 270 (369)
..+++..+ ....++|+|||.|-++.- +|.+..++.|+ ...+..+++.........|+.. |.+.. |..+.
T Consensus 37 ~qfl~~~~---~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 37 RQFLDSQP---TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHhccC---CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 34444443 578999999999976543 48889999999 5555555544443677788888 66543 99999
Q ss_pred ccccccCChhH-HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEH-CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
..++||+.... ...+++++.+.|+|||..+|.-+.
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 99999996444 569999999999999998876553
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.4e-06 Score=73.03 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=71.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~ 277 (369)
.+.|||||||+|.++.-.+... ..++..++-.++.+.|++ .+||.++.|-+.+ .+|+. |++|..-.-+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 4789999999999988776664 346777777888877764 2799999999999 88986 999987665555
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
-.+...+-.-.+++.|+|.|++.
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 44554444555789999999876
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-06 Score=73.92 Aligned_cols=80 Identities=13% Similarity=0.227 Sum_probs=57.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCCC--CE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPKG--DA 267 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~ 267 (369)
..+++.+. .....+|||||||+|.++..++++.+ +++++|. +.+++.+++. ++++++.+|+.+ +++.. +.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 34555554 55668999999999999999999976 6777777 7777765442 689999999987 55432 55
Q ss_pred EEeccccccCC
Q 017595 268 ILMKWILHNWD 278 (369)
Q Consensus 268 v~~~~vlh~~~ 278 (369)
|+.+ .=++.+
T Consensus 109 vv~N-lPY~is 118 (272)
T PRK00274 109 VVAN-LPYNIT 118 (272)
T ss_pred EEEe-CCccch
Confidence 5544 334443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.9e-05 Score=65.62 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=92.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCc--eEEeCCCCC-CCCCC--CEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGV--KHIGGNMFE-RIPKG--DAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv--~~~~~d~~~-~~p~~--D~v~~~~vlh~ 276 (369)
+....++|||||.|....++....- -+.+..|. ..+++.++.. +.+ ....+|-.. ++.+. |+|+.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 3556999999999999999988762 25788887 7788877754 443 445566554 66554 99999999996
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc------CCHHHHHHHHHHcCC
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE------RTTQEFMALANEAGF 350 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~t~~e~~~ll~~aGf 350 (369)
. .+...-+.+|..+|||+|.++ ...+-.+. .++ .....-+..+-. .+|.. ....++-.+|..|||
T Consensus 150 ~--NdLPg~m~~ck~~lKPDg~Fi-asmlggdT----LyE-LR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 T--NDLPGSMIQCKLALKPDGLFI-ASMLGGDT----LYE-LRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred h--ccCchHHHHHHHhcCCCccch-hHHhcccc----HHH-HHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCc
Confidence 6 445678899999999999665 33332221 111 112222222211 13321 145678889999999
Q ss_pred cceeE
Q 017595 351 NGVNY 355 (369)
Q Consensus 351 ~~~~~ 355 (369)
....+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 97655
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=72.01 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=59.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCCCE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKGDA 267 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D~ 267 (369)
...+.+.++ .....+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345555554 5566899999999999999999984 46788887 666665543 3689999999988 6665687
Q ss_pred EEeccccccCC
Q 017595 268 ILMKWILHNWD 278 (369)
Q Consensus 268 v~~~~vlh~~~ 278 (369)
|+++-- ++.+
T Consensus 95 Vv~NlP-y~i~ 104 (258)
T PRK14896 95 VVSNLP-YQIS 104 (258)
T ss_pred EEEcCC-cccC
Confidence 777544 4444
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=9e-06 Score=70.04 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=64.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCC--C-C-CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERI--P-K-GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~--p-~-~D~v~~~~vl 274 (369)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++ ..+++++.+|+++.+ . . .|+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 346999999999999997666653 57888888 766665443 257899999987632 2 2 3999988764
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYE--AIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~ 304 (369)
+. .....+++.+.+ .|+|++.++|-..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 223345555554 3789886665443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=71.36 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=69.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCCC-CCCCEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFERI-PKGDAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~-p~~D~v~~~~ 272 (369)
+.+++||=||||.|..++++++. |. +++.+|+ +.+++.+++ .+|++++.. +.+.. ...|+||.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 47799999999999999999977 44 8988998 888887766 278888862 22222 2349999775
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. + + ..+.+.++++|+|||.++..-.
T Consensus 148 ~---~-~---~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 148 E---P-D---IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred C---C-C---hHHHHHHHHhcCCCcEEEECCC
Confidence 3 2 2 4678999999999998887654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=74.87 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=68.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCCC------C-CCCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFERI------P-KGDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~------p-~~D~v~ 269 (369)
...+|||+|||+|.++...+.. ...+++.+|. +.+++.+++. ++++++.+|+++.. . ..|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999998876643 3448999998 7777765531 37899999998721 1 239999
Q ss_pred eccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.---..-+. ..-..+++.+.+.|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8744211111 1234566778999999999887653
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.5e-05 Score=64.99 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=83.6
Q ss_pred hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-h-HHHHhCCCCCCce-EEeCCCCC-C---CC
Q 017595 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-P-HVIQNAPSYRGVK-HIGGNMFE-R---IP 263 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-~~~~~a~~~~rv~-~~~~d~~~-~---~p 263 (369)
......+++.++......++||+|||+|.++..+++. +-.+++++|. + ++....+..+++. +...|+.. . ++
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~ 138 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIF 138 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcC
Confidence 3445566666652235579999999999999999987 3457899998 5 3444455566654 33335442 1 11
Q ss_pred ----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE-EEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCH
Q 017595 264 ----KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII-IIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTT 338 (369)
Q Consensus 264 ----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 338 (369)
..|+.+.+.. .+|..+.++|+| |.++ ++-+-.+-.+.. ........|-.. .....
T Consensus 139 ~d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~~-------~~~~~ 198 (228)
T TIGR00478 139 PDFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKEA-------IALAL 198 (228)
T ss_pred CCceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHHH-------HHHHH
Confidence 1265555443 257888999999 6544 333222111100 000000111000 11135
Q ss_pred HHHHHHHHHcCCcceeEEEec
Q 017595 339 QEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~~~ 359 (369)
+.+...+.+.||++..+.+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 199 HKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHcCCCeEeeEEECC
Confidence 566777888899988887654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.4e-06 Score=77.74 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=67.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEc---ch-hHHHHhCCCCCCceEEeCCC---CCCCCCC--CEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNF---DL-PHVIQNAPSYRGVKHIGGNM---FERIPKG--DAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~rv~~~~~d~---~~~~p~~--D~v~~~~vlh~ 276 (369)
....+||||||+|.|+..++++. +..+-+ |. +..++.|.++ .|-.+-+-+ .-|+|.. |+|.++.++-.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999884 322221 22 3334444332 232222222 1167754 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
|...+ ..+|-++-|+|||||+++...+...
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 97665 4689999999999999998877554
|
; GO: 0008168 methyltransferase activity |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=81.14 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=70.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCC---CCC-CCEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFER---IPK-GDAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p~-~D~v~~~~ 272 (369)
...+|||+|||+|.++..++... ..+++.+|. +.+++.+++. ++++++.+|+++. .+. .|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 45799999999999999999863 346999999 7777766542 4799999998762 233 39999852
Q ss_pred ccc-------c-C-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 273 ILH-------N-W-DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 273 vlh-------~-~-~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
--. . + ....-..+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 210 0 0 0123457899999999999988764
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=59.99 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=85.3
Q ss_pred cceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCCCCC-CC-CEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFERIP-KG-DAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-~~-D~v~~~~vlh~~ 277 (369)
..-++|||||+|..+..|+.. .|++.+...|+ |..++...+ .-++..+..|+.+.+. +. |+++++--.--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 678999999999998888777 57888999999 777765432 2457888889988443 33 888887543322
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCH
Q 017595 278 DDEH-------------------CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTT 338 (369)
Q Consensus 278 ~d~~-------------------~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 338 (369)
+++. ..++|..+-..|.|.|.+++.-... | ..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------------N----~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------------N----KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-------------------------c----CH
Confidence 2222 1244444455555666555543211 1 25
Q ss_pred HHHHHHHHHcCCcceeEEEec---CceeEEEEe
Q 017595 339 QEFMALANEAGFNGVNYECFV---CNFCIIEFI 368 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~ 368 (369)
+|+-+.+++-||.......-. ...+|+.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 677778888888876654432 445566554
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=66.40 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=66.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCC----CCCC--CCC--CEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNM----FERI--PKG--DAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~----~~~~--p~~--D~v 268 (369)
.....+||+|||+|..+..++...|+.+++.+|. +..+..+.+ .+++.++..++ +.+. +.+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999999 555655443 27888885544 4332 223 777
Q ss_pred Eec--cccccC------------C----------hhHHHHHHHHHHHhCCCCCEEEE
Q 017595 269 LMK--WILHNW------------D----------DEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 269 ~~~--~vlh~~------------~----------d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+++ ++.+.= | -+....++.-+.|.|+|||.+.+
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 765 222210 0 01244677778899999996664
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.6e-06 Score=73.10 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC--CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+.+.+||=||+|.|..+.++++..+-.+++.+|+ |.+++.+++ .+|++++.+|... .... .|+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3679999999999999999987766678999999 888887654 2699999999865 3344 4999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.-..--..+... ...+++.+++.|+|||.+++.-.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8643321111111 35899999999999999888763
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.8e-05 Score=70.37 Aligned_cols=89 Identities=12% Similarity=0.275 Sum_probs=61.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 264 (369)
+..+++... .....+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345555554 55678999999999999999998864 4666666 666554432 3689999999988 5655
Q ss_pred CCEEEeccccccCChhHHHHHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLL 286 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L 286 (369)
.|+|+. +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 587765 444555555444444
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.5e-05 Score=76.14 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=69.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC-----
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER----- 261 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----- 261 (369)
++.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344445444 4456799999999999999999886 57889998 777776654 25799999998652
Q ss_pred CCC--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 262 IPK--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 262 ~p~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
++. .|+|++.--- .....+++.+.+ ++|++.++|.-
T Consensus 363 ~~~~~fD~Vi~dPPr-----~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLDPPR-----AGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEECcCC-----cChHHHHHHHHh-cCCCeEEEEEe
Confidence 222 3998764332 122345555555 68888777643
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.4e-05 Score=69.55 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=72.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC----------CCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI----------PKG 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~----------p~~ 265 (369)
.+.++|||||+++|..+.+++... ++.+++.+|. +...+.|++ .++|+++.||+.+-+ +..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 357899999999999999999886 4678888888 766666543 278999999987621 123
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+|++-.- ...-...++.+.+.|+|||.|+ +|.+.
T Consensus 158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv-~DNvl 192 (247)
T PLN02589 158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIG-YDNTL 192 (247)
T ss_pred cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEE-EcCCC
Confidence 88887643 3456688999999999999755 45544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.3e-05 Score=77.40 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=69.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-C-----CCCCceEEeCCCCC---CCCCC--CEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-P-----SYRGVKHIGGNMFE---RIPKG--DAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~-----~~~rv~~~~~d~~~---~~p~~--D~v~~~~v 273 (369)
....+||||||.|.++..++..+|+..++++|. ...+..+ + ...++.++.+|+.. .++.+ |-|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999998 4433322 2 23688888888742 35544 66654432
Q ss_pred cccCChhH-------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 274 LHNWDDEH-------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 274 lh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e 303 (369)
= -|+... ...+|+.+++.|+|||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 1 122211 3489999999999999988754
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=60.39 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=87.5
Q ss_pred CcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcchhHHHHhCC-----------C--CCCceEEeCCCCC-CCCCC-C
Q 017595 203 GFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDLPHVIQNAP-----------S--YRGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 203 ~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------~--~~rv~~~~~d~~~-~~p~~-D 266 (369)
+++...+|+|+=.|.|.++.-++.. .|.-.+..+-..+...-+. + +.+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 4778899999999999999988876 3443443333222211111 1 2456666666555 43444 7
Q ss_pred EEEecccccc-----CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHH
Q 017595 267 AILMKWILHN-----WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 267 ~v~~~~vlh~-----~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 341 (369)
+++....-|. +....+.++.+.++++|||||.++|.|............ . .-..++..-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt---------~------~~~ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT---------I------TLHRIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhh---------h------hhcccChHHH
Confidence 7766433332 234567899999999999999999999876554322110 0 0112357778
Q ss_pred HHHHHHcCCcceeE
Q 017595 342 MALANEAGFNGVNY 355 (369)
Q Consensus 342 ~~ll~~aGf~~~~~ 355 (369)
.+..+++||+..--
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 88889999997643
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=58.05 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=69.0
Q ss_pred HHHHhccCcCCcceEEEEcCChhH-HHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCC---C-CCEEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGV-TLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIP---K-GDAIL 269 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p---~-~D~v~ 269 (369)
.+.+.++ ..+..++||||||.|. ++..|.+. +..++++|. +..++.+++. .+.++.+|+|++-+ . +|+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 3444454 3345789999999996 77777765 467888888 7777666543 67999999999533 2 39988
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
... |+.+...-+.++++... .-++|.....+
T Consensus 83 sir-----pp~el~~~~~~la~~~~--~~~~i~~l~~e 113 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN--VPLIIKPLSGE 113 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC--CCEEEEcCCCC
Confidence 766 44556666666777654 55666655443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=71.73 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=69.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEEeCCCCC-CCC-CC-CEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHIGGNMFE-RIP-KG-DAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p-~~-D~v~~~~vlh 275 (369)
..+.|||||||+|.++.--+++. -.+++++|...+++.+.+. +.|+++.|.+.+ .+| +. |+|++-+.=|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 45899999999999999888887 5678889988777766542 458999999888 677 44 9998887766
Q ss_pred cCChhH-HHHHHHHHHHhCCCCCEEE
Q 017595 276 NWDDEH-CLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 276 ~~~d~~-~~~~L~~~~~~L~pgG~ll 300 (369)
.+--+. ...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 542121 2233333357899999665
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00029 Score=60.64 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=88.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCC---CCCCC--CEEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFE---RIPKG--DAIL 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~---~~p~~--D~v~ 269 (369)
.+...+|||...|-|.++++.+++.. ..++-+.- |.+++-+.-. .+++++.||..+ +++.. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 35678999999999999999998864 24444454 8888776543 468999999987 45543 8876
Q ss_pred ecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 270 MKW-ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 270 ~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
--- -|.+-..=-...+-++++|.|+|||+++=.-..... .+ .|+. -.....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ry------------rG~d-~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RY------------RGLD-LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------cc------------ccCC-hhHHHHHHHHhc
Confidence 211 011111112458899999999999998743322110 01 1222 255678899999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||.+++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988876544
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.2e-05 Score=65.83 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=68.5
Q ss_pred HhHHHHHHhccCcC--CcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC-------
Q 017595 192 IVMNRILDSYNGFE--QIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER------- 261 (369)
Q Consensus 192 ~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~------- 261 (369)
....++.+.++.++ ...++||+||++|.++..++++. +..+++++|+... .....+.++.+|+.++
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhh
Confidence 34567777776344 45899999999999999999997 7789999998433 1124555556665431
Q ss_pred --CC---CC-CEEEeccccccC---------ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 262 --IP---KG-DAILMKWILHNW---------DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 262 --~p---~~-D~v~~~~vlh~~---------~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.+ .. |+|++-.....- .-+.+...|.-+.+.|+|||.+++--..
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 13 888776622211 1123445566666789999988875543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.9e-05 Score=63.40 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=67.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCC----------------CCCceEEeCCCCCCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPS----------------YRGVKHIGGNMFERIP- 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~~~p- 263 (369)
+....++||||+|+|.++..+... .+....++++. |++++.+++ ..++.++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 346789999999999999888754 33444488888 888776543 1578999999987433
Q ss_pred --CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 264 --KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 264 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
..|.|.+-.. +.++.+++.+-|+|||+++|--
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEee
Confidence 3498876632 3456778888999999999843
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.3e-05 Score=64.32 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=68.5
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH---hCC---CCCCceEEeCCCCC-CCCCC-CEEEeccccccCCh
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ---NAP---SYRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDD 279 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~---~~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d 279 (369)
+++|||+|.|.-+.-++-.+|+++++.+|. ..-+. .+. ..++++++.+.+.+ ..+.. |+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 899999999999999999999999999996 33222 221 13789999998887 33333 999999873
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
....++.-+...++|||+++..-.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 345788999999999999998653
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00025 Score=60.57 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=82.4
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CC-
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RI- 262 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~- 262 (369)
..+.+.+...++.+.+.-+++..+|+|+|+-.|.++..+++.. ++.+++++|+.++.. .++|.++.+|++. +.
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTL 100 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHH
Confidence 4445556677888888667888999999999999999888885 445689999844422 3569999999987 32
Q ss_pred -------CC-C-CEEEecccc--------ccC-ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 263 -------PK-G-DAILMKWIL--------HNW-DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 263 -------p~-~-D~v~~~~vl--------h~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+. . |+|++-..= +|. .-+-+...+.-+...|+|||.+++-.+-
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 2 888733221 221 1233567788888899999999987664
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0001 Score=61.54 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=76.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCCCEEEeccccccCCh
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKGDAILMKWILHNWDD 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 279 (369)
+.++|+|+|||||.+++..+-..|. +++++|+ |+.++.+++. .+|+|+..|+.+--...|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 4478999999999999998776654 7788888 8888777653 5799999998774334477777655443311
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
..-+.+|.++.+.- -.++-+. + .-+.+.+....++.|+++...
T Consensus 124 haDr~Fl~~Ale~s---~vVYsiH----------------------------~--a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKALEIS---DVVYSIH----------------------------K--AGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHHHhh---heEEEee----------------------------c--cccHHHHHHHHHhcCCeEEEE
Confidence 11135566655542 1111111 1 115777888889999887665
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=63.04 Aligned_cols=94 Identities=17% Similarity=0.363 Sum_probs=65.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHHHHh-CCCCCCceEEeCCCCC-CCCC--CCE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHVIQN-APSYRGVKHIGGNMFE-RIPK--GDA 267 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~-a~~~~rv~~~~~d~~~-~~p~--~D~ 267 (369)
++.+.+..+ .....+|||||+|.|.++..|+++...+.++-.|. .+.+.. ....++++++.+|+.+ +++. .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 556777665 55678999999999999999999998877777774 233332 2345899999999999 7875 323
Q ss_pred EEeccccccCChhHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKN 288 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~ 288 (369)
.+.++.=|+.+.+-..++|+.
T Consensus 98 ~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 98 KVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred EEEEcCCCcccHHHHHHHHhc
Confidence 333444455555444444443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0022 Score=57.60 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=90.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHH------HhCCC--------------------------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVI------QNAPS-------------------------------- 247 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~------~~a~~-------------------------------- 247 (369)
...+||-=|||.|.++.+++.+.-.+.+.-++.-+.+ ....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 4579999999999999999999555555444432211 11111
Q ss_pred -------CCCceEEeCCCCC-C-CC---CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchH
Q 017595 248 -------YRGVKHIGGNMFE-R-IP---KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATA 314 (369)
Q Consensus 248 -------~~rv~~~~~d~~~-~-~p---~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~ 314 (369)
..++....|||.+ . -+ .. |+|+.++.+-- .+.....|+.++++|||||..|=.-+..-....
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~--- 210 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEP--- 210 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCC---
Confidence 0257888999988 2 23 12 99988866653 366889999999999999965544444322110
Q ss_pred HHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 315 AAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 315 ~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
.. ......-+.|.+|++.+.++.||++++...
T Consensus 211 ---------~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 ---------MS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00 000123567999999999999999886544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=70.60 Aligned_cols=98 Identities=14% Similarity=0.244 Sum_probs=66.0
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC-----CC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER-----IP 263 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-----~p 263 (369)
.+.+.+. ..+..+|||+|||+|.++..+++... +++++|. +.+++.+++ .++++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444343 45567999999999999999998753 6888898 777776654 26899999998652 11
Q ss_pred -C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 264 -K-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 264 -~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
. .|+|++.-.=-.+ ...+++.+. .++|++.+++
T Consensus 360 ~~~~D~vi~dPPr~G~----~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC----AAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred CCCCCEEEECcCCCCC----CHHHHHHHH-hcCCCEEEEE
Confidence 2 2888864321111 235566554 4789876665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00021 Score=61.84 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=88.0
Q ss_pred EEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC---CCEEEeccccccCC
Q 017595 210 LVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK---GDAILMKWILHNWD 278 (369)
Q Consensus 210 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~---~D~v~~~~vlh~~~ 278 (369)
|.||||-+|.+...|+++..--+++..|. +..++.+++ .++|+++.+|-++.++. .|+|+.+.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999998888999998 777776654 27899999998886554 378877775 4
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
.....++|.+....++...+|++.-.. ....++.+|.+.||.+++=..+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~~-------------------------------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPNT-------------------------------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEESS--------------------------------HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCCC-------------------------------ChHHHHHHHHHCCCEEEEeEEE
Confidence 467889999888887766666653321 1456888999999998865443
Q ss_pred c---CceeEEEEe
Q 017595 359 V---CNFCIIEFI 368 (369)
Q Consensus 359 ~---~~~~vi~~~ 368 (369)
. -.+-||.+.
T Consensus 126 ~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 126 EENGRFYEIIVAE 138 (205)
T ss_dssp EETTEEEEEEEEE
T ss_pred eECCEEEEEEEEE
Confidence 3 346666654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0028 Score=58.43 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=75.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCC-C-C-CEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP-K-G-DAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p-~-~-D~v~~~~vlh~~~d~~ 281 (369)
....++|||||++|.++..++++. .+++.+|...+.......++|.+..+|.+...| . . |++++-.+- .
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve------~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE------K 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc------C
Confidence 466899999999999999999984 599999987777777778999999999988443 3 3 999988873 3
Q ss_pred HHHHHHHHHHhCCCC-CEEEEEeccCCCC
Q 017595 282 CLTLLKNCYEAIPEN-GKIIIIDRMPMVT 309 (369)
Q Consensus 282 ~~~~L~~~~~~L~pg-G~lli~e~~~~~~ 309 (369)
..++++-+.++|..| .+-.|...-.+..
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 447778888898877 4555666555543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=59.74 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=97.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC---------CCCCceEEeCCCCCCCC----------CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP---------SYRGVKHIGGNMFERIP----------KG 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~rv~~~~~d~~~~~p----------~~ 265 (369)
++...||.+|||--.....+... ++++++.+|.|.+++.-+ ...+..++..|+..++. ..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998888877432 368999999998876322 13678999999874221 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHh-hhhhhhHHHHHh-hcCCccCCHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAR-EASMTDIIMLMQ-FSGGRERTTQEFM 342 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~~~~~~t~~e~~ 342 (369)
-++++-.++.+++.++..++|+.+.+...||+.++ .|.+.+-.. ..... ............ .+--...+.+++.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDG--EWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccch--hHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 57888999999999999999999999988888666 555443111 11000 000000000000 0001124689999
Q ss_pred HHHHHcCCcceeE
Q 017595 343 ALANEAGFNGVNY 355 (369)
Q Consensus 343 ~ll~~aGf~~~~~ 355 (369)
++|.+.||+..+.
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 9999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=68.26 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=59.2
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCC-CCEEEeccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPK-GDAILMKWILH 275 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~-~D~v~~~~vlh 275 (369)
..+|||+|||+|.++..++... .+++++|. +.+++.+++ .++++++.+|+.+ . ... .|+|++.---.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 4799999999999999999853 68899998 777776653 2579999999976 2 222 39988774311
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
... ..+++ ....++|++.+++
T Consensus 252 G~~----~~~~~-~l~~~~~~~ivyv 272 (315)
T PRK03522 252 GIG----KELCD-YLSQMAPRFILYS 272 (315)
T ss_pred Ccc----HHHHH-HHHHcCCCeEEEE
Confidence 111 12222 2334677665554
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.6e-05 Score=63.47 Aligned_cols=100 Identities=18% Similarity=0.308 Sum_probs=67.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CC------CCCceEEeCCCCCCCCCC-CEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PS------YRGVKHIGGNMFERIPKG-DAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~------~~rv~~~~~d~~~~~p~~-D~v~~ 270 (369)
....+.|||||-|.++..|+..||+.-+.|+.+ -.|.+.. +. ..++.+...+.+.-.|+. .--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 346899999999999999999999999999887 5444322 11 256777777776644431 11111
Q ss_pred ccccccCChhH-----------HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEH-----------CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~-----------~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+-.++.+||+. ...++.+..=.|++||.++.+.-+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 22222233322 346788888999999999887654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.3e-05 Score=67.88 Aligned_cols=113 Identities=15% Similarity=0.326 Sum_probs=72.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCe-EEEcch-hHHHHhCCC---C---CCceEEeCCCCC---CCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIE-GVNFDL-PHVIQNAPS---Y---RGVKHIGGNMFE---RIP 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~---~---~rv~~~~~d~~~---~~p 263 (369)
..+....+.+ .+.+|||||.|.|.-+.++-..+|+++ ++.+.. |.+-+.... . ....-...|+.. ++|
T Consensus 103 ~~L~~~~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 103 DELQKRVPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHhCCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC
Confidence 3444444433 346799999999999988888899985 566665 333222111 1 122223334332 466
Q ss_pred CCCEEEeccccccCChhH----HHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 264 KGDAILMKWILHNWDDEH----CLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 264 ~~D~v~~~~vlh~~~d~~----~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
..|.|.+..++|-+-... ....++.+...+.|||.|+|+|.-.+.
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 668887777776653333 334899999999999999999986543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00014 Score=62.31 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=61.0
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C--CC-C-CEEEec
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I--PK-G-DAILMK 271 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~--p~-~-D~v~~~ 271 (369)
..++||++||+|.++.+++.+... +++.+|. +..++.+++. ++++++.+|.++. . .. . |+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 579999999999999999998763 7888887 6666544331 4789999999652 2 11 2 677665
Q ss_pred cccccCChhHHHHHHHHHH--HhCCCCCEEEEEec
Q 017595 272 WILHNWDDEHCLTLLKNCY--EAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~ 304 (369)
--... ....++++.+. .+|+++|.++ .|.
T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 44332 22334444443 3577777544 554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00024 Score=61.51 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=86.2
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHH---hCC---CCCCceEEeCCCCC-C-CCC-CCEEEecccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQ---NAP---SYRGVKHIGGNMFE-R-IPK-GDAILMKWILHN 276 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~---~a~---~~~rv~~~~~d~~~-~-~p~-~D~v~~~~vlh~ 276 (369)
..+++|||.|.|.-+.-++-.+|+++++.+|. ..-+. .+. ..++++++++-+.+ . .+. .|+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 68999999999999999998999999999996 33222 222 13789999998877 2 234 799998876
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
.....++.-+...+++||.++..-.. .++. -..+.+.....-|+.+.++.
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~~--------------------------~~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKGL--------------------------AGKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhHH--------------------------hhhh-hHHHHHHHHHhhcCcEEEEE
Confidence 33457788889999999987643221 0110 13455556667788888887
Q ss_pred Eec
Q 017595 357 CFV 359 (369)
Q Consensus 357 ~~~ 359 (369)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 765
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00025 Score=62.45 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=57.5
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHH---HHhCCCC---CCceEEeCCCCC-CCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHV---IQNAPSY---RGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~---~~~a~~~---~rv~~~~~d~~~-~~p~~ 265 (369)
.+..|.+.-+ .+....|||||+|||.++..+++....+-++..|.-.+ .+..+.. ..++++.||+++ ++|..
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 3456666665 77889999999999999999999987666666664222 2233322 579999999999 88877
Q ss_pred CEEEe
Q 017595 266 DAILM 270 (369)
Q Consensus 266 D~v~~ 270 (369)
|.++.
T Consensus 125 d~cVs 129 (315)
T KOG0820|consen 125 DGCVS 129 (315)
T ss_pred ceeec
Confidence 77765
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0003 Score=64.13 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~ 260 (369)
.+++++.+. ......+||++||.|..+..+++.+| +.+++++|. |.+++.+++. +|++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 457777775 55567999999999999999999986 789999999 8888877542 589999999976
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00046 Score=65.74 Aligned_cols=90 Identities=9% Similarity=-0.057 Sum_probs=62.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCC---C-CCCCEEEeccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFER---I-PKGDAILMKWILH 275 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~-p~~D~v~~~~vlh 275 (369)
..+|||++||+|.++..++... .+++++|. +..++.++.. ++++++.+|+.+. . ...|+|++.----
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 4699999999999999998653 57888888 7777655532 5789999998652 1 1249988774422
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+ ..++++.+. .++|++.++|..
T Consensus 312 G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 GI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 22 234555554 478887666643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=55.10 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-----CCCceEEeCCCCC---CCCCC--CEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-----YRGVKHIGGNMFE---RIPKG--DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d~~~---~~p~~--D~v~~~~vl 274 (369)
.+..|||.||=|-|.....+-++-|..+.+.--.|.|.++-+. ..+|.+..|-..+ .+|.+ |-|+.----
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 4678999999999999999999999888887777999887664 3678888885554 45543 766654432
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+. ++...+.+.+.++|||+|++-....+..+
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 334 78889999999999999988877765433
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0004 Score=57.74 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=73.9
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCCCEEEeccccccCCh
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKGDAILMKWILHNWDD 279 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d 279 (369)
..+.|+|.|+|.++.-.++... +++.+.. |....-+.+. .+++++.+|..+ ++..+|+|+|-..=..+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 6899999999999988777744 4555555 5555544432 689999999999 8877799998776555556
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+..+.++..+.+-||-++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 77788999999999999988765543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00032 Score=59.21 Aligned_cols=140 Identities=17% Similarity=0.246 Sum_probs=79.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCC---CCEEEeccccccCChhHH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPK---GDAILMKWILHNWDDEHC 282 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~---~D~v~~~~vlh~~~d~~~ 282 (369)
.+.++||+|.|.|..+..++..+.++-++.+. ..+..+.++. +..+... .+-+.. .|+|.|-++|.-. .+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc--~~p 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRC--FDP 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhh--cCh
Confidence 45899999999999999888776553333222 2222222221 2222211 111111 2999999998766 345
Q ss_pred HHHHHHHHHhCCC-CCEEEEEeccC--CC---CCcchHHHhhhhhhhHHHHHhhcCCccC--CHHHHHHHHHHcCCccee
Q 017595 283 LTLLKNCYEAIPE-NGKIIIIDRMP--MV---TPEATAAAREASMTDIIMLMQFSGGRER--TTQEFMALANEAGFNGVN 354 (369)
Q Consensus 283 ~~~L~~~~~~L~p-gG~lli~e~~~--~~---~~~~~~~~~~~~~~d~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~ 354 (369)
-++|+.++.+|+| .|++++.=..+ +. +....+. +... .+ .. +|+.+ ....+-++|+++||.+..
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn-----~L-e~-~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDN-----LL-EN-NGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchH-----HH-Hh-cCccHHHHHHHHHHHHHhcCchhhh
Confidence 7999999999999 78877643221 11 0000000 0000 11 11 44432 233467889999999888
Q ss_pred EEEec
Q 017595 355 YECFV 359 (369)
Q Consensus 355 ~~~~~ 359 (369)
.+..+
T Consensus 258 wTrlP 262 (288)
T KOG3987|consen 258 WTRLP 262 (288)
T ss_pred hhcCC
Confidence 77654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=49.68 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=95.3
Q ss_pred ccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-h----HHHHhCCCCCCceEEeCCCCCCCC-----CC-CEEE
Q 017595 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-P----HVIQNAPSYRGVKHIGGNMFERIP-----KG-DAIL 269 (369)
Q Consensus 201 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~v~ 269 (369)
++ +++..+||-+|..+|....+++...++-.+.++.. | +.+..+++++|+--+-+|+..|.. +. |+|+
T Consensus 72 ~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 72 FP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEE
Confidence 55 77889999999999999999999988666655554 3 446677888999999999987642 23 7776
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
.-=. .+.++.-+..++..-||+||++++.=-...-+...++.. .+ .++. +.|++.|
T Consensus 151 ~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~------------vf-------~~ev-~kL~~~~ 206 (231)
T COG1889 151 QDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE------------VF-------KDEV-EKLEEGG 206 (231)
T ss_pred EecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH------------HH-------HHHH-HHHHhcC
Confidence 4321 235567778889999999997776543332221111100 01 2233 4557889
Q ss_pred CcceeEEEec---CceeEEEE
Q 017595 350 FNGVNYECFV---CNFCIIEF 367 (369)
Q Consensus 350 f~~~~~~~~~---~~~~vi~~ 367 (369)
|++.++..+. ..++++.+
T Consensus 207 f~i~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVA 227 (231)
T ss_pred ceeeEEeccCCcccceEEEEE
Confidence 9999988775 44555544
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=60.96 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=105.8
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC----C-----CCceEEeC
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS----Y-----RGVKHIGG 256 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~-----~rv~~~~~ 256 (369)
+...+++.-+.+.+.++ .+...|+-+|||--.-+..+-.. +++++..+|.|++++.-++ . .++++++.
T Consensus 74 ~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~ 150 (297)
T COG3315 74 LAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAV 150 (297)
T ss_pred HHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEec
Confidence 44444444344444443 33689999999977666654322 2588999999999885432 2 37999999
Q ss_pred CCCC-CCCC-----C------CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchH-HHhhhhhhh
Q 017595 257 NMFE-RIPK-----G------DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATA-AAREASMTD 323 (369)
Q Consensus 257 d~~~-~~p~-----~------D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d 323 (369)
|+++ +++. + -++++-.++.+++.+...++|+.+...++||..++.............. .........
T Consensus 151 Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (297)
T COG3315 151 DLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRG 230 (297)
T ss_pred cccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccc
Confidence 9995 5542 1 4889999999999999999999999999999877765531111100000 000000000
Q ss_pred HHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 324 IIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 324 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
......-.........++..++.+.||......
T Consensus 231 ~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 231 EDLDRGELVYFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred cccccccceeccCCHHHHHHHHHhcCEEEEecC
Confidence 000000001123458899999999999987763
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0065 Score=54.78 Aligned_cols=152 Identities=11% Similarity=0.173 Sum_probs=97.1
Q ss_pred HhHHHHHHhccC---cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchh------HHHHhCCC---------------
Q 017595 192 IVMNRILDSYNG---FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP------HVIQNAPS--------------- 247 (369)
Q Consensus 192 ~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~------~~~~~a~~--------------- 247 (369)
+.++.+...+|. -....+||-=|||.|.++..|+..++.+.+--+..= -++..++.
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 345566666652 123578999999999999999999888776322211 11111100
Q ss_pred ------------------------CCCceEEeCCCCC--CCCC----CCEEEeccccccCChhHHHHHHHHHHHhCCCCC
Q 017595 248 ------------------------YRGVKHIGGNMFE--RIPK----GDAILMKWILHNWDDEHCLTLLKNCYEAIPENG 297 (369)
Q Consensus 248 ------------------------~~rv~~~~~d~~~--~~p~----~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG 297 (369)
........|||.+ ..+. .|+|+.++.+-- .......|+.+++.|+|||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCc
Confidence 0234556789987 3333 288877765543 3667899999999999999
Q ss_pred EEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 298 KIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 298 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
..+=.-+..-....... . ....+-+.+.+++..+.+.-||++++-..+
T Consensus 291 vWiNlGPLlYHF~d~~g-------~------~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHG-------V------ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EEEeccceeeeccCCCC-------C------cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 87766665432211100 0 001245678999999999999998876543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0054 Score=52.96 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=85.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-h----HHHHhCCCCCCceEEeCCCCCCCC-----CC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-P----HVIQNAPSYRGVKHIGGNMFERIP-----KG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~v~~~ 271 (369)
+....+||-+|..+|....+++.... +-.+..++. | ..+..+++++||--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 66789999999999999999999854 666666666 4 446677778999999999987521 12 776654
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEecc--CCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM--PMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
-. + + ++++-++.++..-||+||.+++.=-. .+....+. . ...+-.+.|++.|
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~------------~----------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKARSIDSTADPE------------E----------VFAEEVKKLKEEG 204 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH------------H----------HHHHHHHHHHCTT
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH------------H----------HHHHHHHHHHHcC
Confidence 32 2 2 56777889999999999998876321 11110000 0 0122344567789
Q ss_pred CcceeEEEec
Q 017595 350 FNGVNYECFV 359 (369)
Q Consensus 350 f~~~~~~~~~ 359 (369)
|++.+...+.
T Consensus 205 ~~~~e~i~Le 214 (229)
T PF01269_consen 205 FKPLEQITLE 214 (229)
T ss_dssp CEEEEEEE-T
T ss_pred CChheEeccC
Confidence 9999998875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=52.21 Aligned_cols=96 Identities=15% Similarity=0.258 Sum_probs=63.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-hHHHHhCCCC---------CCceEEeCCCCCC-CCCC-CE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFER-IPKG-DA 267 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~-~p~~-D~ 267 (369)
..+..+|+|+|||.|.++..++.. .++++++++|. +...+.+.+. .++.+..+++.+. .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 37889999998 6665554431 4566666665542 2222 77
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++.-|.--.+++ .+|+.+.+ |+...++.-++.
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEEEcCCc
Confidence 776555544433 55665555 666666655443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=59.16 Aligned_cols=96 Identities=20% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCC-------------CCCceEEeCCCCCCCC---C-C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPS-------------YRGVKHIGGNMFERIP---K-G 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~p---~-~ 265 (369)
++..++|-+|||.|..+++++ +||+. .++.+|+ |.|++.++. .+|++++..|.++-.. . .
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 466799999999999999987 57854 6889999 999998773 2799999999987321 2 2
Q ss_pred CEEEeccccccCChhH--------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEH--------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~--------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|+||. +++|+. ...+-.-+++.|+++|.+++.....
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 77664 344433 3467778889999999999876543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=57.96 Aligned_cols=95 Identities=15% Similarity=0.283 Sum_probs=63.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC----CCCCCceEEeCCCCC-CCCC---
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA----PSYRGVKHIGGNMFE-RIPK--- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~-~~p~--- 264 (369)
.+.+++.++ ..+...|||||+|.|.++..|++... ++++++. +..++.. ...++++++.+|+++ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 456666665 66789999999999999999999984 4555554 4444433 335899999999998 5554
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCC
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPE 295 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p 295 (369)
..+.+..+.=++.+ ..++.++...-+.
T Consensus 96 ~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 96 NQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred CCceEEEEEecccch----HHHHHHHhhcccc
Confidence 34444455444443 3566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0047 Score=50.25 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=63.7
Q ss_pred EEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCC---CC---ceEEeCCCCC---CCCC--C-CEEEeccccc
Q 017595 210 LVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSY---RG---VKHIGGNMFE---RIPK--G-DAILMKWILH 275 (369)
Q Consensus 210 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~r---v~~~~~d~~~---~~p~--~-D~v~~~~vlh 275 (369)
++|+|||+|... .+....+. ..++++|. +.++...... .. +.+..+|... ++.. . |++.....+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 33333333 46777887 5555542221 11 5778777764 4443 3 8884444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+.. ....++++.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 443 678999999999999999998876544
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=61.11 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=68.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCC---CCCCEEEecccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERI---PKGDAILMKWILHN 276 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p~~D~v~~~~vlh~ 276 (369)
..+|||++||+|.++..++...+..++++.|. +..++.+++ .+++++..+|+..-+ ...|+|++.--
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 35899999999999999998877568899998 777776553 245678888886522 22499987541
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
-....++..+.+.++|||.+.|.
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12346788878889999999998
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00033 Score=46.34 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=39.5
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+.|++.|...+ ++.|+.|||+++|+ +..-+.|+|..|+..|++.++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence 45788888754 47899999999999 999999999999999999864
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0052 Score=52.74 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=55.6
Q ss_pred CcceEEEEcCChhHHHH---HHHHhC-CCCeEEEcch--hHHHHhCCCC----CCceEEeCCCCCC--C-C-------CC
Q 017595 206 QIKQLVDVGGGLGVTLN---IITSRY-PHIEGVNFDL--PHVIQNAPSY----RGVKHIGGNMFER--I-P-------KG 265 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~---~l~~~~-p~~~~~~~D~--~~~~~~a~~~----~rv~~~~~d~~~~--~-p-------~~ 265 (369)
++..|+|+|.-.|+-+. .+++.+ ++.+++++|+ ......+.+. +||+++.||-.++ + + ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 36899999966655544 445555 7788888887 3332333333 8999999998762 1 1 11
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
-++++-..-|.+ +...+.|+.....+.||++++|-|...
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 234444444555 667888999999999999999988754
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.065 Score=50.77 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=64.1
Q ss_pred CcceEEEEcCChhHHHHHH--------HHh-------CCCCeEEEcchhH-----HHHhC---C------------CCCC
Q 017595 206 QIKQLVDVGGGLGVTLNII--------TSR-------YPHIEGVNFDLPH-----VIQNA---P------------SYRG 250 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~-----~~~~a---~------------~~~r 250 (369)
+..+|+|+|||+|..+..+ .++ -|.+.+..-|+|. +.... + ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999665432 222 2567777777751 11110 0 0011
Q ss_pred ---ceEEeCCCCC-CCCCC--CEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 017595 251 ---VKHIGGNMFE-RIPKG--DAILMKWILHNWDD--E----------------------------------HCLTLLKN 288 (369)
Q Consensus 251 ---v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d--~----------------------------------~~~~~L~~ 288 (369)
+.-++|.|+. -+|.. +++++++.||.++. + +...+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888 47876 99999999997652 0 12234444
Q ss_pred HHHhCCCCCEEEEEeccCC
Q 017595 289 CYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 289 ~~~~L~pgG~lli~e~~~~ 307 (369)
=++=|.|||++++.=...+
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 4566899999999876654
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0014 Score=61.69 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=77.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC--CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG--DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~v~~~~vl 274 (369)
....++|+|||.|.....+.. +.....++++. +.-+.++.. .....++.+|+.. +++.. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 345899999999998887654 45667788887 554444432 1345558889988 67764 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
.|.++ ..+++++++++++|||++++.+.+....
T Consensus 189 ~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 99955 5689999999999999999998876544
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0035 Score=50.60 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=39.0
Q ss_pred CCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 261 RIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 261 ~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+.. . |+|++.||+.|++-++-..+++.|++.|||||+|-|.-+
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 4543 3 999999999999989999999999999999999998765
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0073 Score=52.63 Aligned_cols=97 Identities=19% Similarity=0.352 Sum_probs=75.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC----CeEEEcch-hHHHHhC-----CCCCCc--eEEeCCCCC---CCCCC---CE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH----IEGVNFDL-PHVIQNA-----PSYRGV--KHIGGNMFE---RIPKG---DA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a-----~~~~rv--~~~~~d~~~---~~p~~---D~ 267 (369)
+...++|+|.|+..=+..|+..+.. ++++-+|. ..++... +.++.+ .-+++|+.. .+|.+ =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 5789999999999888888877665 78899998 5555432 235654 445677765 24443 45
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+++...|-++++++|..+|.+++.+|+||-++++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 67889999999999999999999999999888874
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.003 Score=56.33 Aligned_cols=87 Identities=16% Similarity=0.194 Sum_probs=61.0
Q ss_pred eEEeCCCCC--CC------CC-CCEEEeccccccCC--hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhh
Q 017595 252 KHIGGNMFE--RI------PK-GDAILMKWILHNWD--DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320 (369)
Q Consensus 252 ~~~~~d~~~--~~------p~-~D~v~~~~vlh~~~--d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 320 (369)
.++..|..+ ++ |+ .|+|++..+|.... .++-.+.++++.++|||||.|++........-
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y---------- 206 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYY---------- 206 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEE----------
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeE----------
Confidence 477888877 33 33 49999999998753 45567999999999999999999887542210
Q ss_pred hhhHHHHHhhcCC-----ccCCHHHHHHHHHHcCCcceeEEE
Q 017595 321 MTDIIMLMQFSGG-----RERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 321 ~~d~~~~~~~~~~-----~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
.. |+ -..+.+.+++.++++||.+.+...
T Consensus 207 --------~v-G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 207 --------MV-GGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --------EE-TTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --------EE-CCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 01 22 234899999999999999888764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0044 Score=52.55 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=63.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCe---------EEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIE---------GVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPK- 264 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~- 264 (369)
+++...|+|-=||+|.++++.+...++.. +++.|. +.+++.++. ...+.+...|+.+ +++.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 66778999999999999999888877766 888888 777766543 2468999999988 6433
Q ss_pred C-CEEEeccccccC-Ch-----hHHHHHHHHHHHhCCCCCEEEE
Q 017595 265 G-DAILMKWILHNW-DD-----EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 265 ~-D~v~~~~vlh~~-~d-----~~~~~~L~~~~~~L~pgG~lli 301 (369)
. |+|++.--.-.- .. +--.++++.+.+.|+|...+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3 999877543321 21 1123678888888998433333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=49.08 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=71.5
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCCCEEEe
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKGDAILM 270 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~v~~ 270 (369)
.+...|++=..++|||+|.|+|..++.-++..- ..++..|. |...+..+-. -.+.+...|..-+-+..|+++.
T Consensus 70 ~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 70 YIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred HHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEe
Confidence 333344444679999999999998888766542 23444444 5444433321 3577777777663333499999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
..++++. ..+.++++-..+....|-.++|-++-.+.-
T Consensus 149 gDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 149 GDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred eceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 9999887 556677774444445677777777766554
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.032 Score=48.66 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=92.1
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHHHHhCCCCCCceEEeC-CCCC----CCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHVIQNAPSYRGVKHIGG-NMFE----RIPKG 265 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~-d~~~----~~p~~ 265 (369)
.....++.++-.-....+||||..||.|+-.++++.- ..++++|. .+.....+..+||..++. |+.. ++.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccC
Confidence 3456667676334678999999999999999998842 24555554 445555566678766665 5443 23223
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE-eccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII-DRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|++++--.+- ....+|-.+...++|++-++.. -+-.+..+... .......| +........++..
T Consensus 145 ~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v--~kkGvv~d-------~~~~~~v~~~i~~ 210 (245)
T COG1189 145 PDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQV--GKKGVVRD-------PKLHAEVLSKIEN 210 (245)
T ss_pred CCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhc--CcCceecC-------cchHHHHHHHHHH
Confidence 7877665542 2357899999999999865543 22221111000 00000000 0112234678888
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
++.+-||++..+.+.+
T Consensus 211 ~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 211 FAKELGFQVKGLIKSP 226 (245)
T ss_pred HHhhcCcEEeeeEccC
Confidence 9999999999887654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0037 Score=59.31 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=40.7
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
.++||++||+|.++..+++... +++++|. +.+++.+++. ++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988764 6888887 7777655532 578999998865
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00055 Score=52.64 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEEcCChhHHHHHHHHhCCCC---eEEEcch-h---HHHHhCCC---CCCceEEeCCCCCC---CC-CC-CEEEeccccc
Q 017595 211 VDVGGGLGVTLNIITSRYPHI---EGVNFDL-P---HVIQNAPS---YRGVKHIGGNMFER---IP-KG-DAILMKWILH 275 (369)
Q Consensus 211 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~rv~~~~~d~~~~---~p-~~-D~v~~~~vlh 275 (369)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.++..+- ++ .. |+++.-.- |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 689999999999988876654 5788998 5 23333332 26899999998652 33 23 88876652 3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.. +....-++.+.+.|+|||.+++.|
T Consensus 80 ~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 33 667788999999999999888765
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0012 Score=42.63 Aligned_cols=43 Identities=12% Similarity=0.317 Sum_probs=38.1
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
++.|...|.+ |+.++.||++.+++ .+..+.+.|+.|...|+++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5667788887 59999999999999 9999999999999999986
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=57.82 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=68.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCC-CEEE--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKG-DAIL-- 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~-D~v~-- 269 (369)
.....+|||+++|.|.=+.+++....+ -.++..|+ +.-++..++ ..++.+...|... .++.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 346689999999999999999998754 47788887 555444332 2567888888654 23433 8887
Q ss_pred --ec--ccc-------ccCChhHH-------HHHHHHHHHhCCCCCEEEEEe
Q 017595 270 --MK--WIL-------HNWDDEHC-------LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 270 --~~--~vl-------h~~~d~~~-------~~~L~~~~~~L~pgG~lli~e 303 (369)
|+ .++ ..|+.++. .++|..+.+.|||||+|+-..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 33 122 23333332 689999999999999885433
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0099 Score=54.03 Aligned_cols=101 Identities=15% Similarity=0.267 Sum_probs=71.7
Q ss_pred cceEEEEcCChhHHHHHHHHhC--------------------CCCeEEEcch---hHHHHhCCC----C-----------
Q 017595 207 IKQLVDVGGGLGVTLNIITSRY--------------------PHIEGVNFDL---PHVIQNAPS----Y----------- 248 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 248 (369)
..+||-||||.|.-..+++..+ +.++++.+|+ ..|+..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999988777766655 2367788887 344442110 0
Q ss_pred --------CCceEEeCCCCC-CCC---------CCCEEEeccccccC---ChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 249 --------RGVKHIGGNMFE-RIP---------KGDAILMKWILHNW---DDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 249 --------~rv~~~~~d~~~-~~p---------~~D~v~~~~vlh~~---~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
-++.|...|+++ ..+ ..++|.+-+.++-+ +..+..++|.++-..++||..|+|+|.--.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 147999999987 221 12788777766643 456678999999999999999999997543
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.014 Score=48.76 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=69.7
Q ss_pred HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeC-CCCCC--------
Q 017595 192 IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGG-NMFER-------- 261 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~-d~~~~-------- 261 (369)
+..-++-+++.-++...+|||+||..|.++.-..++. |+--+.++|+-.+.. ..++.++.+ |+.++
T Consensus 55 FKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 55 FKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred hhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHH
Confidence 3333455555545677999999999999998888775 999999999844322 245556666 66543
Q ss_pred -CCCC--CEEEeccccccCC----------hhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 262 -IPKG--DAILMKWILHNWD----------DEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 262 -~p~~--D~v~~~~vlh~~~----------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|.. |+|++-+. ++-+ -+-|..+|--....++|+|.+++--+.-
T Consensus 131 ~lp~r~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred hCCCCcccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 2332 77665432 2211 1234455555566778999888765543
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0052 Score=43.09 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHhChhHHHHhcCCCC-CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 47 AAELGVFEIIAKAGPGA-KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~-~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
..+-.|++.|...| + ++|+.+||+.+|+ +...+.++|..|...|+|.... ..+..|.++.
T Consensus 6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~----~~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG----GTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC----CCCCceEeec
Confidence 45667889998864 2 3999999999999 8999999999999999998742 1236777664
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0034 Score=49.01 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 39 VLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 39 ~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
-.+.+|.--.++.|+..|... ++.++.+|++.+++ .+..+++.|+.|...|+|....+. ...+|++++.
T Consensus 8 ~~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~G---r~~~Y~l~~~ 76 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQG---KWVHYRLSPH 76 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEc---CEEEEEECch
Confidence 345566667899999999764 48999999999999 999999999999999999865311 1235887653
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0039 Score=46.33 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=47.9
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
-+.|++.|...+ ++.|+.+||+.+|+ +..-+.|+|+.|+..|++.... ..+.|.+++..
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~-----~~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG-----QNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC-----CCCceeecHHH
Confidence 356788887742 48999999999999 9999999999999999998741 34678887643
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0014 Score=56.40 Aligned_cols=89 Identities=21% Similarity=0.273 Sum_probs=62.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC--CCEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK--GDAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~v~~~~vl 274 (369)
....+|+|.-||.|.++..+++..+..+++..|+ |...+..++ ..++..+.+|..+-.+. .|-|++...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp- 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP- 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T-
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh-
Confidence 4568999999999999999999777788999999 877765432 26789999998773323 387766543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEE
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKI 299 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~l 299 (369)
+.+..+|..+.+++++||.+
T Consensus 179 -----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 179 -----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcCCcEE
Confidence 23346888899999998865
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0026 Score=43.53 Aligned_cols=54 Identities=9% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+.+|.--.++.|++.|... +|.|+.+||+.+|+ .+.-+.+.|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3455556788899999443 59999999999999 999999999999999999864
|
... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.097 Score=45.17 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=70.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCC-C-C-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIP-K-G-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-~-~-D~v~~~~vl 274 (369)
...++.||||-+|.+.+.+.+.++...++..|. +...+.+.+ .+++++..+|-+.++. + . |+++.+.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 334599999999999999999999999999998 766665543 2789999999988653 3 2 88876664
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
.-.....+|++-.+-|+.=-++++
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEE
Confidence 446678889888888875445665
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0019 Score=52.47 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=68.2
Q ss_pred cceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCC---------CCCCceEEeCCCCCC---CCC--CCEEEe
Q 017595 207 IKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAP---------SYRGVKHIGGNMFER---IPK--GDAILM 270 (369)
Q Consensus 207 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------~~~rv~~~~~d~~~~---~p~--~D~v~~ 270 (369)
..+||++||| +|..+.-++...|...+..-|- ...+...+ ...++.++..+.... +.+ .|+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 3789999999 6667777777788888877775 33333222 225566666666542 222 299999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+..+.+ ++....+.+.+...|+|.|+-++..+-
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecCc
Confidence 999854 366778999999999999997776653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.012 Score=58.70 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=44.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC--------CeEEEcch-hHHHHhCCC----CC--CceEEeCCCCCC-------C-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH--------IEGVNFDL-PHVIQNAPS----YR--GVKHIGGNMFER-------I- 262 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~----~~--rv~~~~~d~~~~-------~- 262 (369)
...+|||.|||+|.++..++++.+. ..++++|+ +..++.++. .. .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887652 46788888 666655432 12 345666665431 1
Q ss_pred CCCCEEEec
Q 017595 263 PKGDAILMK 271 (369)
Q Consensus 263 p~~D~v~~~ 271 (369)
+..|+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 123999876
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0083 Score=55.69 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=65.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-------CCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCC-C-CC--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-------YPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFE-R-IP-- 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~-~p-- 263 (369)
.....+|+|-+||+|.++.++.+. .+..+++++|. +.....+.- .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455679999999999999998874 47788899998 665554321 1334688889876 3 22
Q ss_pred C-CCEEEeccccccC--Ch-----------------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 264 K-GDAILMKWILHNW--DD-----------------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 264 ~-~D~v~~~~vlh~~--~d-----------------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. .|+|++.--+-.. .+ ..-..++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 2 3988876332211 10 1112588999999999999877654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0041 Score=50.45 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=41.6
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
+++|||||.|.++..++..+|+.+++.+|. |...+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 7777655432 457777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0047 Score=49.32 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC-C--CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK-G--DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~--D~v~~~~vl 274 (369)
+.+.++|+|||.|-+..+.. .+.+-.++|+|+ |..++.+... -++.+.+.|+.+..+. + |.++...-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 45899999999999984433 233446899999 9998887654 3568888888874433 2 776665544
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0061 Score=46.08 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=50.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.++.|++.|... ++.++.+|++.+++ .++.+++.|+.|..+|+|...... ...+|++++...
T Consensus 13 tRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~G---r~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEG---RTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEEC---CEEEEEECCCcc
Confidence 577889999874 37999999999999 999999999999999999875321 234677776555
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=52.84 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=57.1
Q ss_pred CcceEEEEcCChh-HHHHHHHHh-CCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCC-C--CCCCCEEEec
Q 017595 206 QIKQLVDVGGGLG-VTLNIITSR-YPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFE-R--IPKGDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G-~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~--~p~~D~v~~~ 271 (369)
.+.+|+=||+|.= ..+..+++. .++..++++|. |...+.+++ ..++.|+.+|..+ + +...|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4579999999955 445555544 46788889998 777766543 2689999999876 2 3345998877
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
...- .+.++-.++|+++.+.|+||+++++.
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 23345679999999999999988876
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.025 Score=49.01 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=69.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhC-------CCCCCceEEeCCCCCCC----CC----C-CE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNA-------PSYRGVKHIGGNMFERI----PK----G-DA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~~~----p~----~-D~ 267 (369)
+++++||||.=+|.-+..++...|. -+++.+|. +...+.+ .-...|+++.++..+.+ +. . |+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 5799999999999999998888875 57788887 5444433 22367999999887632 21 2 77
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
++.- +| .........++.+++|+||.|++-....+.
T Consensus 153 aFvD----ad-K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFVD----AD-KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEc----cc-hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 7643 23 344558999999999999977655544433
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.092 Score=47.57 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=103.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC--CCCeEEEcchhHHHHhCCC----C--------------------
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY--PHIEGVNFDLPHVIQNAPS----Y-------------------- 248 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----~-------------------- 248 (369)
..++.. .++..+|+.+|||.-.+...+...+ +.++++.+|.|++++.--. .
T Consensus 79 ~~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~ 155 (335)
T KOG2918|consen 79 RAFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGT 155 (335)
T ss_pred HHHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcc
Confidence 344443 4578999999999999999999988 8889999999877653210 0
Q ss_pred ----CCceEEeCCCCC--CCC----C----C---CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc
Q 017595 249 ----RGVKHIGGNMFE--RIP----K----G---DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE 311 (369)
Q Consensus 249 ----~rv~~~~~d~~~--~~p----~----~---D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 311 (369)
++..++..|+.+ .+. . . -+++.-=+|-+++++....+++-+..... .+.+++.|.+.+.++
T Consensus 156 ~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~- 233 (335)
T KOG2918|consen 156 DLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR- 233 (335)
T ss_pred eeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-
Confidence 345666666653 111 1 1 35566678888999999999999888776 567888999886653
Q ss_pred chHHHhhhhhhhHHHHHhhc-C-----C--ccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 312 ATAAAREASMTDIIMLMQFS-G-----G--RERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 312 ~~~~~~~~~~~d~~~~~~~~-~-----~--~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+... |...+. . | ...|.+..++.|.++||+-+.+..+
T Consensus 234 ------Fg~v----M~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 234 ------FGKV----MLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ------HHHH----HHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2222 222110 1 1 1248889999999999998877653
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0041 Score=45.15 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCC-CCCcceecChhchhhh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAG-DNQRLYSLAPVAKYFV 122 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-~~~~~y~~t~~~~~~~ 122 (369)
++++|+..|... +..+..+|.+.+|+ +...+.+.|+.|...|+|+....-.+ .....|++|+.++...
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~ 69 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAF 69 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHH
Confidence 477888899875 48999999999999 99999999999999999987543211 1224699998887544
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0051 Score=58.08 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=41.3
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
.++||++||+|.++..+++... +++++|. +.+++.+++. ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988874 7888888 7777766542 478899998865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0075 Score=42.05 Aligned_cols=63 Identities=14% Similarity=0.311 Sum_probs=42.3
Q ss_pred HhChhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 49 ELGVFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 49 ~lglfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
++-++..|. .. ++.+..+|++.+++ +...+.+.++.|...|+|++...+.......|++|+.+
T Consensus 5 q~~vL~~l~~~~---~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 5 QWQVLRALAHSD---GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHHHT--T---S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHHHccC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 344555565 32 59999999999999 99999999999999999976533211122468888753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=54.99 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=65.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeE---EEcchhHHHHhCCCCCCceEEeCCCCCCC---CCC-CEEEecccccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEG---VNFDLPHVIQNAPSYRGVKHIGGNMFERI---PKG-DAILMKWILHN 276 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~rv~~~~~d~~~~~---p~~-D~v~~~~vlh~ 276 (369)
.....+|+|..+|.|.|+.+|.+. | +=+ +-.+-+..+...-.+ ++.-+-+|..+++ |.. |++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 456789999999999999999754 2 222 211112222222211 2333344665544 554 99999999888
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDD-EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+.+ -+...+|-++-|.|+|||.++|.|.+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 743 33568999999999999999998753
|
; GO: 0008168 methyltransferase activity |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0076 Score=53.91 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=49.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|...+ .+.++.|||+++|+ +..-+.|+|..|+..|++.++. +.++|++++..-.
T Consensus 7 l~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~-----~~g~Y~Lg~~~~~ 66 (246)
T COG1414 7 LAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP-----EDGRYRLGPRLLE 66 (246)
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCcEeehHHHHH
Confidence 46888888742 35679999999999 9999999999999999999862 3578999976543
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.02 Score=48.77 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=61.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC---------CCceEEeCCCCC-CC----C------CC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY---------RGVKHIGGNMFE-RI----P------KG 265 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~rv~~~~~d~~~-~~----p------~~ 265 (369)
+...|+.+|||--.....+....++++++.+|+|.+++.-++. .+++++..|+.+ .+ . ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4559999999999999999998889999999999887754331 236789999986 21 1 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNC 289 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~ 289 (369)
-++++-.++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 578888999999999999988876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.05 Score=52.62 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=84.7
Q ss_pred ChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcC--CcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-h
Q 017595 167 GVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFE--QIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-P 239 (369)
Q Consensus 167 ~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 239 (369)
..|+.+++|+-.-..|++++ ...++++.+.-+ ....|+=+|+|.|-++.+.++. .-.++.+.++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 45777888886555665544 446666665322 2568889999999887776554 34567777776 7
Q ss_pred HHHHhCCCC------CCceEEeCCCCC-CCC--CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 240 HVIQNAPSY------RGVKHIGGNMFE-RIP--KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 240 ~~~~~a~~~------~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
..+-..+.. .+|+++..|+.+ .-| +.|+++.--.=.+-+.|-..+.|.-+-+.|||+|.-|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 665544432 689999999998 444 2488765433222233445578999999999998554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.048 Score=56.38 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=72.0
Q ss_pred hHHHHHHhccCc-CCcceEEEEcCChhHHHHHHHHhC----C--------------------------------------
Q 017595 193 VMNRILDSYNGF-EQIKQLVDVGGGLGVTLNIITSRY----P-------------------------------------- 229 (369)
Q Consensus 193 ~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~----p-------------------------------------- 229 (369)
.+..++..-. | ++...++|-.||+|.++++.+... |
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3445555443 6 456899999999999998876531 1
Q ss_pred CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCC---C-CCEEEecccccc-CC-hhHHHHHHHHHHHhCC
Q 017595 230 HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIP---K-GDAILMKWILHN-WD-DEHCLTLLKNCYEAIP 294 (369)
Q Consensus 230 ~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p---~-~D~v~~~~vlh~-~~-d~~~~~~L~~~~~~L~ 294 (369)
..+++++|. +.+++.++.. +++.+..+|+.+ +.+ . .|+|+++--.-. +. +++...+.+.+.+.|+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 8887766542 568999999987 332 1 399988744321 22 2334455455555544
Q ss_pred ---CCCEEEEEec
Q 017595 295 ---ENGKIIIIDR 304 (369)
Q Consensus 295 ---pgG~lli~e~ 304 (369)
||+++.++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877654
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.01 Score=38.29 Aligned_cols=45 Identities=9% Similarity=0.299 Sum_probs=38.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
.+..|+..|.+. ++.|..+||+.+|+ ....+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 456788999886 37999999999999 9999999999999999974
|
... |
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0097 Score=42.83 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=43.6
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
|+..|.. ++.+..+|+...++ +...+.++|+.|...|++.. .++.|.+|+.+..++.
T Consensus 11 IL~~l~~----~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~-------~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK----GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKK-------KDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T----T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEE-------ETTEEEE-HHHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeC-------CCCEEEECccHHHHHH
Confidence 4455543 48999999999999 99999999999999999965 4689999999987764
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.011 Score=53.73 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=48.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+.|++.|.+.+ ++.|+.|||+.+|+ +..-+.|+|..|+..|++.++. +.++|++.+...
T Consensus 31 l~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~-----~~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG-----ELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCeEecCHHHH
Confidence 35677776642 48999999999999 9999999999999999998752 458899986644
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.015 Score=44.07 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=30.6
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL 238 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 238 (369)
.+.-|.+.+. ......++|||||+|.+..-|... +.++.++|.
T Consensus 46 Li~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 46 LIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 3444444443 345678999999999998888765 456788885
|
; GO: 0008168 methyltransferase activity |
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.013 Score=53.32 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=48.5
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+.|++.|...+ .+.|+.|||+.+|+ +..-+.|+|..|+..|+|.++. ..+.|++.....
T Consensus 28 l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~-----~~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS-----QLGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCeEEecHHHH
Confidence 36777777643 47999999999999 9999999999999999998752 457899886543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0045 Score=51.27 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=41.1
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCC---CC--C-CCEEEecc
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFER---IP--K-GDAILMKW 272 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p--~-~D~v~~~~ 272 (369)
..|+|+.||.|..+.++++.+.. ++.+|+ |..++.++. .++|+++.+|+++- +. . .|+|+++-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999999865 555555 544444432 26899999999872 22 2 38888664
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0072 Score=51.42 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=62.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C---CCC-CEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I---PKG-DAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~---p~~-D~v~~ 270 (369)
...++||+=||+|.++.+.+.+.- .+++.+|. +..+...++. +++.++..|.+.. . ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 468999999999999999888863 36777777 6555544431 4688999997652 1 223 99998
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCCEEEEEecc
Q 017595 271 KWILHNWDDEHCLTLLKNCY--EAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~ 305 (369)
---.... ....++++.+. .+|+++|.++ +|..
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii-~E~~ 154 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLII-IEHS 154 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEE-EEEE
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEE-EEec
Confidence 8664432 11356777776 7889888555 5543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.013 Score=52.58 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=48.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|...+ .+.|+.|||+.+|+ +..-+.|+|..|+..|++.++ .+.|++.+....
T Consensus 12 l~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~-------~~~Y~lG~~~~~ 69 (248)
T TIGR02431 12 LAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD-------GRLFWLTPRVLR 69 (248)
T ss_pred HHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-------CCEEEecHHHHH
Confidence 46788887643 48999999999999 999999999999999999863 478999876443
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.019 Score=42.00 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
++.|+++||+.+++ ++..++++|..|...|+++... | ..+.|.++...+.
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~---G-~~GGy~L~~~~~~ 73 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR---G-RGGGYRLARPPEE 73 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET---S-TTSEEEESS-CCG
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC---C-CCCceeecCCHHH
Confidence 46999999999999 9999999999999999998642 1 3477888765443
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.013 Score=52.76 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=48.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++. +.+.|++.+....
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~-----~~~~Y~lG~~~~~ 75 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG-----ESEKYSLTLKLFE 75 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCcEEecHHHHH
Confidence 3567777653 47999999999999 9999999999999999998752 3578999976543
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0045 Score=43.35 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=41.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..++..|... |+.|+.+||+.+|+ +...+.+.|+-|...|++...
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999875
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.16 Score=47.09 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=69.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeC-CCCC-CCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGG-NMFE-RIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~-d~~~-~~p~~--D~v~~~~ 272 (369)
......|||==||||.++++..-. +++++|.|+ ..++.-++.. ....+... |+.. |++.. |.|.+-.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 446679999999999999997654 578888898 6677666542 33444454 8877 77763 7765432
Q ss_pred c------cccCC-hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 I------LHNWD-DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 v------lh~~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
- ..-.. ++--.++|+.+.+.|++||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11111 34567999999999999999987654
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.18 Score=44.96 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=72.5
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC----C---CCceEEeCCCCC-CC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS----Y---RGVKHIGGNMFE-RI 262 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~rv~~~~~d~~~-~~ 262 (369)
.+.-|+..++ .....+|++=|.|+|.++.++++. .|.-+..-+|. ....+.+.+ + +++++..-|+.. .+
T Consensus 93 Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 93 DIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred cHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 3556677776 778899999999999999999988 47777777777 443444332 2 789999999877 34
Q ss_pred CC----CCEEEeccccccCChhHHHHHHHHHHHhCCCCC-EEEEEeccC
Q 017595 263 PK----GDAILMKWILHNWDDEHCLTLLKNCYEAIPENG-KIIIIDRMP 306 (369)
Q Consensus 263 p~----~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG-~lli~e~~~ 306 (369)
+. +|.|++-. |.+. ..+--++++||-+| ++....++.
T Consensus 172 ~~ks~~aDaVFLDl-----PaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 172 LIKSLKADAVFLDL-----PAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccccccceEEEcC-----CChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 32 38887643 2221 33455566777654 777666654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.093 Score=49.84 Aligned_cols=92 Identities=10% Similarity=0.128 Sum_probs=69.3
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC------CCceEEeCCCCCCC---CC-CCEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERI---PK-GDAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~---p~-~D~v~~~~vl 274 (369)
..+|||.-||+|..+..++.+.+++ +++..|. |..++.+++. .++++..+|+..-+ .. .|+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3689999999999999999986554 6888998 7777655432 45788888887622 22 49998765 2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.. ...++..+.+.+++||.|.|.-+
T Consensus 124 -Gs----~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 -GT----PAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred -CC----cHHHHHHHHHhcccCCEEEEEec
Confidence 22 23688999999999999999843
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.031 Score=43.81 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=54.0
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ +...+.+.++-|...|+|.....+.....-.+.+|+.+..+..
T Consensus 28 ~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 4456688888775 48999999999999 8999999999999999998753221111236889988887665
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.022 Score=51.55 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=50.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYF 121 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~ 121 (369)
-+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++. +.+.|++++....+
T Consensus 13 al~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~-----~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 13 GLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA-----SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec-----CCCcEEEcHHHHHH
Confidence 346778886643 36999999999999 9999999999999999998752 35789999765543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.034 Score=49.96 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=71.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC----------CCceEEeCCCCC---CCCCC--C
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY----------RGVKHIGGNMFE---RIPKG--D 266 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~---~~p~~--D 266 (369)
..+++++|=||+|.|.+.+...++ +.+ .+..+|. ..+++..+++ ++|.+..||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999998877 655 4677777 6666655442 789999998765 34343 8
Q ss_pred EEEeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|+.-..=---|... -..+++.+.++|||||+++++..+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 887553211111111 2366777889999999999887543
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.038 Score=41.48 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+|++.+++ ++..+.+.|+-|+..|+|.......+.....|.+|+.+..+..
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 356678888765 37999999999999 8999999999999999998642111111235777777665553
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.021 Score=40.06 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=36.5
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|.+.|... +.+|..+||..+++ ++..++.+|..|+..|.|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 56778775 58999999999999 999999999999999999875
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.038 Score=43.36 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=41.3
Q ss_pred HHhChhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccccc
Q 017595 48 AELGVFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLS 103 (369)
Q Consensus 48 ~~lglfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 103 (369)
.+..+|-+|- .+ +|.|+++||+.++. +..-+.+-|+-|...|++.+...
T Consensus 28 ~Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 28 LDVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeeee
Confidence 3556676776 44 59999999999999 99999999999999999998643
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.28 Score=45.92 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=59.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh--------C--------CCCeEEEcchhH-----HHHh-------CCCCCC--ceE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR--------Y--------PHIEGVNFDLPH-----VIQN-------APSYRG--VKH 253 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~-------a~~~~r--v~~ 253 (369)
..+..+|+|+||.+|..+..+... + |.+.++.-|+|. +... .....+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999887654432 2 235667777651 1100 000123 466
Q ss_pred EeCCCCCC-CCCC--CEEEeccccccCCh-------------------------------------hHHHHHHHHHHHhC
Q 017595 254 IGGNMFER-IPKG--DAILMKWILHNWDD-------------------------------------EHCLTLLKNCYEAI 293 (369)
Q Consensus 254 ~~~d~~~~-~p~~--D~v~~~~vlh~~~d-------------------------------------~~~~~~L~~~~~~L 293 (369)
++|.|+.. +|.. |++++++.||.++. .+...+|+-=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 77999984 6776 99999999996641 11223344444568
Q ss_pred CCCCEEEEEeccCCC
Q 017595 294 PENGKIIIIDRMPMV 308 (369)
Q Consensus 294 ~pgG~lli~e~~~~~ 308 (369)
+|||++++.=...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999998776655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.034 Score=35.54 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+.|..+||+.+++ ....+.+.|+.|...|++...
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 7899999999999 999999999999999999863
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.022 Score=50.24 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=64.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCCCCCC--CCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFERIPK--GDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~--~D~v~~~~vlh~ 276 (369)
+.+.+|+|||||.-=++.-.....|+.++++.|+ +..++.... ..+.++...|...+.|. .|+.++--++|-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 3578999999999999888888889999999999 666665443 25678888899986554 399999999987
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+..+.. ..--++.+.++- -.++|.-+.
T Consensus 184 le~q~~-g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp HHHHST-THHHHHHHHSCE-SEEEEEEES
T ss_pred HHHHhc-chHHHHHHHhCC-CeEEEeccc
Confidence 743332 232334444442 356665554
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.046 Score=37.30 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=36.9
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|.+.|.... +|.+..|||+.+|+ ...-.+++|..|...|.+...
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 5677776621 59999999999999 999999999999999999864
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.24 Score=46.17 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=74.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC--C-CCCCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER--I-PKGDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~--~-p~~D~v~~~~vl 274 (369)
..-+|||.=+|.|.++..++....- +++.+|+ |..++..++. +++..+.||...- . +.+|-|++.+.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999999887543 3889998 8777655432 5589999999882 2 335999887753
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+.+++..+.+.+++||.+...+.+..+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 2346788888899999999998887654
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.051 Score=44.60 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=45.9
Q ss_pred hHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 53 FEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 53 fd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+-.|+..+.+++.|+++||+..++ ++..|.++|..|...|+|.... ...|.|+++.....
T Consensus 14 L~~LA~~~~~~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r----G~~GGy~Lar~~~~ 73 (150)
T COG1959 14 LLYLALLPGGGPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR----GKGGGYRLARPPEE 73 (150)
T ss_pred HHHHHhCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec----CCCCCccCCCChHH
Confidence 334444332248999999999999 9999999999999999998752 13578888865543
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.048 Score=37.70 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=37.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
+++|..+||+.+|+ ....+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~------~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR------GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec------CCCeEEeCC
Confidence 48999999999999 999999999999999999974 236777653
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.055 Score=46.87 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=50.6
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC--CCCCcceecChhchhhhc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA--GDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~~~~~ 123 (369)
.|...|.+. +|+|+.|||+++|+ ++..+++.|..|++.|+++...... |+..-.|++|..+...+.
T Consensus 15 ~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~ 82 (218)
T COG2345 15 RILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFP 82 (218)
T ss_pred HHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcc
Confidence 456667765 59999999999999 9999999999999999997643221 223346999888775443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.09 Score=48.24 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 260 (369)
.+++++.+. ......++|.=+|.|..+..+++..|+.+++++|. |.+++.+++. +|+.++.++|.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777665 55667999999999999999999988899999999 8888776542 478888888865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.077 Score=50.47 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=71.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCCC----CC---CCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFERI----PK---GDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~----p~---~D~v~ 269 (369)
..++|||+=|=||.++.+.+...- .++|.+|. ...++-+++. +++.++.+|.|+-+ .. .|+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 378999999999999999876532 27889998 6666666542 56899999998732 22 39998
Q ss_pred ecccccc------CC-hhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 270 MKWILHN------WD-DEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 270 ~~~vlh~------~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+---=.- |+ ..+-..++..+.+.|+|||.+++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6421110 11 133458899999999999999887654
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.066 Score=47.61 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYF 121 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~ 121 (369)
.++....+.+|+=.|.+ ||+|.+||...++. .+..+..-|+-|...|++.+ +++.|++|..+..+
T Consensus 8 ~if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~-------~~~~Y~LS~~G~ii 72 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ-------EGDRYSLSSLGKII 72 (260)
T ss_pred HHHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe-------cCCEEEecchHHHH
Confidence 34555678899999998 59999999999999 99999999999999999997 47999999999987
Q ss_pred hc
Q 017595 122 VL 123 (369)
Q Consensus 122 ~~ 123 (369)
+.
T Consensus 73 v~ 74 (260)
T COG4742 73 VE 74 (260)
T ss_pred HH
Confidence 75
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.048 Score=35.95 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL 92 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L 92 (369)
.-.+|.+|.+.|-||. +. ..|.++||+.+|+ .+.-+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-PR-----~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-PR-----RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-CC-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 3468999999999998 44 5899999999999 888777777654
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.26 Score=43.77 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=62.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-----------C-CCceEEeCCCCCC------CCC-CC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-----------Y-RGVKHIGGNMFER------IPK-GD 266 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~-~rv~~~~~d~~~~------~p~-~D 266 (369)
...+||++|+|+|..++..+ ......++.-|.|.+...... . ..+.+...+...+ .|. .|
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 46789999999995554444 445677888887665543221 0 1444444444331 234 59
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+|+.+.++++- +....++..++..|..++.+++.-..
T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEec
Confidence 99999999875 44557778888888888855554444
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.097 Score=45.28 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=68.7
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhC-C---C--C---eEEEcchhHHHHhCCCCCCceEEeCCCCCC------
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-P---H--I---EGVNFDLPHVIQNAPSYRGVKHIGGNMFER------ 261 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p---~--~---~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~------ 261 (369)
+-+.|..+.+..|++|+....|.++.-+.++. . . - .++.+|+..+.. .+.|.-+.+|+.++
T Consensus 32 ideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 32 IDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHH
Confidence 33444445677899999999999998888772 2 1 1 278888854432 36788888999762
Q ss_pred ---CCC--CCEEEecc-----ccccCCh----hHHHHHHHHHHHhCCCCCEEEE
Q 017595 262 ---IPK--GDAILMKW-----ILHNWDD----EHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 262 ---~p~--~D~v~~~~-----vlh~~~d----~~~~~~L~~~~~~L~pgG~lli 301 (369)
+.+ +|+|++-. -+|.++. +-....|.-....|+|||.++-
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 122 39998864 3676632 2233556677789999998873
|
|
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.055 Score=40.20 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=47.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
|+..|.. |+....||.+.+ ++ .+..|.+-|+.|...|+|.+...+.....-.|++|+.+..+..
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 4555655 499999999999 89 9999999999999999998753221111236999999887764
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.1 Score=47.86 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=48.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 260 (369)
..++++.+. ......++|.=-|.|+.+.++++++|+.+++++|. |.+++.+++. +|+.++.++|.+
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456777776 66778999999999999999999999999999999 8888766542 688888888754
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.09 Score=42.69 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++.++.+||+.+++ .+..+.+.|+.|...|+|... ..+.|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~------~~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE------KYRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe------cCceEEECHHHHHHH
Confidence 58899999999999 999999999999999999853 346799999887544
|
|
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.089 Score=45.57 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=50.7
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccccc--CCCCCCcceecChhchhhhc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLS--SAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~--~~~~~~~~y~~t~~~~~~~~ 123 (369)
..|+..|... ++.|+.+||+.+++ ++..+.+.|+.|...|+|..... ..+.....|.+|+.+.....
T Consensus 4 ~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 4577777664 48999999999999 99999999999999999986421 11222235788888776553
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.089 Score=42.02 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=39.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|.++||+.+++ ++..+.++|+.|...|++.... ...+.|.++....
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~----g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR----GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc----CCCCCccCCCCHH
Confidence 48999999999999 9999999999999999997531 1235677765444
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.046 Score=37.22 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.++-.|...++ .+.|+.+||+.+++ ++..+.+.++.|...|+|...
T Consensus 6 ~q~~vL~~l~~~~~-~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 6 SQFRVLMALARHPG-EELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHHSTT-SGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 35567777777531 12899999999999 999999999999999999875
|
... |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.43 Score=39.20 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC
Q 017595 26 DTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA 105 (369)
Q Consensus 26 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 105 (369)
+.++.+...-.....-..+. -|+..+... ++.+..+||+.+++ ++..+.++|+.|...|+|...
T Consensus 21 ~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---- 84 (152)
T PRK11050 21 EGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---- 84 (152)
T ss_pred HHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe----
Confidence 35555555444333333332 355566653 48999999999999 999999999999999999863
Q ss_pred CCCCcceecChhchhhh
Q 017595 106 GDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 106 ~~~~~~y~~t~~~~~~~ 122 (369)
....+.+|+.+..+.
T Consensus 85 --~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 85 --PYRGVFLTPEGEKLA 99 (152)
T ss_pred --cCCceEECchHHHHH
Confidence 234677777766554
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.11 Score=48.53 Aligned_cols=109 Identities=17% Similarity=0.304 Sum_probs=74.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch---h-HHHHhC------------CCCCCceEEeCCCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL---P-HVIQNA------------PSYRGVKHIGGNMF 259 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~-~~~~~a------------~~~~rv~~~~~d~~ 259 (369)
.+.+.+. ........|+|+|.|.....++.......-+|+.+ | +..... ++...++.+.++|.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4455555 66778999999999999988877654444444443 2 222211 11245899999998
Q ss_pred CC------CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 260 ER------IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 260 ~~------~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+ .+++++|+..++. ++++...+ ++++..-+++|.+++-.++..+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEecccccccc
Confidence 73 2446888888886 44455444 44888889999999999988764
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.096 Score=42.14 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|+++||+.+++ ++..++++|..|...|++.... | ..|.|.++....
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~---G-~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR---G-PGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe---C-CCCCEeccCCHH
Confidence 48999999999999 9999999999999999997531 1 345688775444
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.11 Score=42.37 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=50.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++-.|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.....+.....-...+|+.+..+..
T Consensus 41 ~q~~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 41 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 344567777654 48999999999999 9999999999999999998753221111234677777765543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.24 Score=41.94 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=62.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCC---CC-C--CCEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFER---IP-K--GDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p-~--~D~v~~~ 271 (369)
...++||+=+|+|.++.+.+.++- .+++.+|. .......++ ..++.++..|...- .+ . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999998864 35666676 444443332 26788888888741 11 2 4999988
Q ss_pred ccccc-CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 272 WILHN-WDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 272 ~vlh~-~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
--.+. +-+....-++-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 77762 111111111212457799999666533
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.42 Score=46.16 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=72.1
Q ss_pred ceEEEEcCChhHHHHHHHHh-CCCCeEEEcchhHHHHh-----CCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCC
Q 017595 208 KQLVDVGGGLGVTLNIITSR-YPHIEGVNFDLPHVIQN-----APSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWD 278 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~-----a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 278 (369)
-+++-+|||+-.+...+-+. |+++.-+.++ +.+++. ++..+...+...|+.. .++.. |+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 39999999999888776655 4544444333 333332 2334678999999988 67653 9999999999863
Q ss_pred -hhH-------HHHHHHHHHHhCCCCCEEEEEecc--CCCCCc
Q 017595 279 -DEH-------CLTLLKNCYEAIPENGKIIIIDRM--PMVTPE 311 (369)
Q Consensus 279 -d~~-------~~~~L~~~~~~L~pgG~lli~e~~--~~~~~~ 311 (369)
|+. ....+..+.++|+|||+.+.+... .+..+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~ 171 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRK 171 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCC
Confidence 332 235689999999999999888773 444433
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.13 Score=42.87 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|+++||+.+++ ++..+.++|..|...|+|.... | .+|.|.+.....
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r---G-~~GGy~Lar~p~ 72 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR---G-PGGGYLLGKDAS 72 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC---C-CCCCeeccCCHH
Confidence 48999999999999 9999999999999999998631 1 346788875543
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.64 Score=37.67 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=49.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+-++..|...+ ++.|..+||+.+++ ++..+.+.++-|+..|+|.....+.....-...+|+.+..+..
T Consensus 34 ~~vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 34 WVTLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 34566666532 26899999999999 9999999999999999998753221111235778877776654
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.27 Score=39.54 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~ 265 (369)
++++..++ .....+.+|+|.|.|....+.++.. -...+++++ |-....++- ..+.+|..-|+++ ++...
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 45566555 3455899999999999887766554 345677777 544443321 2678899999988 77655
Q ss_pred -CEEE-eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 266 -DAIL-MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 266 -D~v~-~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.+++ ....+ + ..+-.+++.-|+.+.+++-.-+-+|.
T Consensus 140 ~~vviFgaes~--m-----~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESV--M-----PDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHH--H-----hhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 3333 22221 1 12345566678888888887776554
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.055 Score=36.45 Aligned_cols=47 Identities=11% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.++..|... ++.+..+||+.+++ ++..+.++++-|...|++...
T Consensus 4 ~q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 4 SQFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 345566677775 48999999999999 999999999999999999875
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.11 Score=41.46 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
++.|+.+||+.+++ ++..+.+.|+.|...|++.... + ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~---g-~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR---G-VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC---C-CCCChhhcC
Confidence 58999999999999 9999999999999999997531 0 234566644
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.14 Score=39.40 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHhChhHHHH--hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 47 AAELGVFEIIA--KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 47 a~~lglfd~L~--~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
..++.++..|. ... +++.|..+||..+++ ++..+.+.++.|+..|+|.+...+.....-.+.+|+.+...+
T Consensus 25 ~~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 25 LEELLILYYLGKLENN-EGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHHHhhhcc-CCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 34556666666 211 158999999999999 999999999999999999875322111112466777666554
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.15 Score=34.29 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=39.4
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|++.|... +..|+++||+.+++ .+.-++|=|..|...|++...
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 467788775 59999999999999 999999999999999999874
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.17 Score=43.72 Aligned_cols=55 Identities=9% Similarity=0.283 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.-++|...++..|++.|... +|+.+-|||+++|+ ++.-+..-+..|+..|+++..
T Consensus 16 v~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 45677788999999999986 59999999999999 899999999999999999863
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.12 Score=50.15 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=41.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE 260 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 260 (369)
++....+||+-||||.++.++++... +++++.+ |+.++.|+.. .+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 66779999999999999999998865 4555555 6665555432 688999995544
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.047 Score=41.70 Aligned_cols=86 Identities=19% Similarity=0.341 Sum_probs=41.6
Q ss_pred CEEEeccccc----cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHH
Q 017595 266 DAILMKWILH----NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 266 D~v~~~~vlh----~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 341 (369)
|+|+|-.|.- ++.|+-...+++++++.|+|||.+++ |+-.- .. +........ .+...+ ..-...++++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w----~s-Y~~~~~~~~-~~~~n~-~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPW----KS-YKKAKRLSE-EIRENY-KSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---H----HH-HHTTTTS-H-HHHHHH-HH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCc----HH-HHHHhhhhH-HHHhHH-hceEEChHHH
Confidence 6776665532 35788899999999999999997764 54211 00 000000000 000011 1111235568
Q ss_pred HHHHHH--cCCcceeEEEec
Q 017595 342 MALANE--AGFNGVNYECFV 359 (369)
Q Consensus 342 ~~ll~~--aGf~~~~~~~~~ 359 (369)
...|.+ .||+.++.....
T Consensus 75 ~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHTSTTT---EEEEE---
T ss_pred HHHHHhcccceEEEEEcccC
Confidence 887776 699988765543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.19 Score=32.61 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=37.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+++.|... ++.++.+|++.+++ .+.-+.+.|..|...|++...
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 56666654 47999999999999 999999999999999999864
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.21 Score=41.06 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=45.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++..+.+||+.++. .++-+..+++-|...|++++. ..+.+.+|+.+.....
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~------~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYE------PYGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEe------cCCCeEEChhhHHHHH
Confidence 68999999999999 999999999999999999985 4688999998886554
|
|
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.23 Score=33.51 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=35.9
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|+..|.. ++.|..+|++.+++ +..-+.+.|+.|...|++...
T Consensus 2 il~~l~~----~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 2 ILKLLAE----GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred HHHHhhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 4455553 48999999999999 889999999999999999864
|
|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.21 Score=34.98 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=43.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
+..|+..+... +.+..+|++.+++ +..-+.+.|+.|.+.|++...... ....|..++
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 44566776663 5899999999999 899999999999999999864211 235666665
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.18 Score=35.19 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=38.2
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
++.++..|.+ ++.+..+||+.+|+ ....+.+.++.|.+.|+...
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~ 45 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVL 45 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 4567778876 48899999999999 99999999999999999654
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.22 Score=43.14 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=47.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
.++.++..|... ++.+..+||+.+++ ++.-+.+.|+.|...|++.+.. .....|.+|+.
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~----~r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG----RKGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc----CCccEEEeCCC
Confidence 355777888764 37899999999999 9999999999999999999752 12356777764
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.5 Score=35.29 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=75.5
Q ss_pred EEcCChhHHHHHHHHhCC---CCeEEEcch-hHHHHhCCC---------CCCceEEe-CCCCC--C-C--CC--CCEEEe
Q 017595 212 DVGGGLGVTLNIITSRYP---HIEGVNFDL-PHVIQNAPS---------YRGVKHIG-GNMFE--R-I--PK--GDAILM 270 (369)
Q Consensus 212 DvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~rv~~~~-~d~~~--~-~--p~--~D~v~~ 270 (369)
=||=|.=.++.+|++.+. ++.++.+|. ..+.+.... ..++.++. .|..+ . . .. .|.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788889999999977 455678887 444443331 13344333 35554 1 2 12 299988
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 271 KWILHNW-----------DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 271 ~~vlh~~-----------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++----. ..+-...+++.+.+.|+++|.+.|.-...+. ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 7653320 0123457899999999999999986543221 1111
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.++.+++||..++..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 24577788999988887654
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.2 Score=34.65 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-|-|+.|||+.+|++ .+..+.+.|+.|...|++...
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 377999999999992 388999999999999999874
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.37 Score=40.67 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=39.8
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..|+++|... |++|.++||..+|+ ....++++|..|...|++..
T Consensus 25 ~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 25 FEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred hHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 4588888875 58999999999999 99999999999999999985
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.36 Score=35.63 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=52.8
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHH----------HHhcCccc-cccccCCCCCCcceec
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILR----------LLVTNRVL-RCSLSSAGDNQRLYSL 114 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~----------~L~~~g~l-~~~~~~~~~~~~~y~~ 114 (369)
.-++..||..|....| .+.++.|||..++. ++..+..-|+ .|+.+|++ .+...+ ....|++
T Consensus 8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~---g~k~Y~l 79 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKG---GFKYYRL 79 (90)
T ss_pred HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecC---CeeEEEe
Confidence 4578889999988744 58999999999999 8887777775 58999999 332111 2358999
Q ss_pred Chhchhhh
Q 017595 115 APVAKYFV 122 (369)
Q Consensus 115 t~~~~~~~ 122 (369)
|+.+..++
T Consensus 80 T~~G~~~~ 87 (90)
T PF07381_consen 80 TEKGKRIA 87 (90)
T ss_pred ChhhhhHH
Confidence 99887654
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.30 E-value=4.6 Score=35.67 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=53.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC---C--CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK---G--DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~---~--D~v~~~~vl 274 (369)
..++||=||=. -..+.+++..++..+++++|+ ..+++...+. -.|+.+..|+..++|. + |+++.--.
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 35899999944 344555555566678999998 6665543321 2499999999998875 2 99987765
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
++.+-..-++.+...+||.-|.....-.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4557788999999999997664444433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.25 Score=40.68 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.++.+||+..++ ++..|+++|..|...|+|.... | ..|.|+++....
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r---G-~~GGy~La~~p~ 71 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR---G-RNGGVRLGRPAA 71 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec---C-CCCCeeecCCHH
Confidence 47899999999999 9999999999999999998752 1 347788875544
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.26 Score=37.74 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 467788899885 48999999999999 99999999999999999984
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.36 Score=33.45 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=42.6
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCC--cccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNT--GVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~--~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
|++.|.+.+ +|++..+|++.+..+ ..+ +..++|.|++|...|++... ..+.+.+|+.+.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~~------g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRKV------GRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCcccc------CCcccccCHHHH
Confidence 567777753 699999999998652 113 47899999999999987753 233456766544
|
|
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.35 Score=40.88 Aligned_cols=74 Identities=9% Similarity=0.207 Sum_probs=54.4
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCC--CCCCcceecChh
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSA--GDNQRLYSLAPV 117 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~y~~t~~ 117 (369)
..+|.--.++.|++.|...+ ++.|+.+|++.+ ++ ...-+.|.|+.|+..|+|....... +.....|+++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 34566677889999998753 259999999998 57 7788999999999999999753210 111246888876
Q ss_pred chh
Q 017595 118 AKY 120 (369)
Q Consensus 118 ~~~ 120 (369)
+-.
T Consensus 79 ~~~ 81 (178)
T PRK06474 79 DAK 81 (178)
T ss_pred eee
Confidence 544
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.23 Score=45.21 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCC------CCCCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERI------PKGDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p~~D~v~~ 270 (369)
..++|||+=|=||.++...+.. .-.+++.+|. ...++.+++ .++++++..|+++.+ ...|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999986653 3457899998 666665543 258999999998732 12399975
Q ss_pred cccc---ccCC-hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 271 KWIL---HNWD-DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 271 ~~vl---h~~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
---- ..+. ..+-.++++++.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3110 0111 13456899999999999999876554
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.2 Score=40.30 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=67.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCC---CCEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPK---GDAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~---~D~v 268 (369)
.....+|||..++.|.=+.++++..++ ..++.+|. +.-++.... ..++.++..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456699999999999999999999876 45578887 544443322 1456677777543 1221 3665
Q ss_pred Ee------cccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LM------KWIL-------HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~------~~vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++ ..++ ..++.++ -.++|+.+.+.|||||+|+-..-..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 42 2333 3333332 3478999999999999888665544
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.36 Score=46.78 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC--C-CC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE--R-IP- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p- 263 (369)
...++.+. ..+..+++|+=||.|.++..++++.. ++++++. +..++.|+. .++++|+.++.++ + +.
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444443 45668999999999999999996654 5666666 666665543 2679999999887 2 21
Q ss_pred --CCCEEEeccccccCChhHHH-HHHHHHHHhCCCCCEEEEE
Q 017595 264 --KGDAILMKWILHNWDDEHCL-TLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 --~~D~v~~~~vlh~~~d~~~~-~~L~~~~~~L~pgG~lli~ 302 (369)
..|+|+.---=-- +. .+++.+.+ ++|-..++|.
T Consensus 360 ~~~~d~VvvDPPR~G-----~~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 360 GYKPDVVVVDPPRAG-----ADREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred cCCCCEEEECCCCCC-----CCHHHHHHHHh-cCCCcEEEEe
Confidence 1288875433222 22 44555444 5666666664
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.48 Score=45.09 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=52.4
Q ss_pred CCceEEeCCCCC---CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 249 RGVKHIGGNMFE---RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 249 ~rv~~~~~d~~~---~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
++|+++.+++.+ ..|.+ |.+++..++..+++++..+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 899999999877 34443 9999999999999999999999999999999999998876543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.43 Score=35.41 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.|+.+|...| |=.+.-+|..+++ +...+.+.|+-|..+|++++.
T Consensus 8 l~~~IL~hl~~~~---~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAG---PDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4567888998864 6688899999999 999999999999999999986
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.1 Score=40.41 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=67.3
Q ss_pred CcCCcceEEEEcCChhHHHHHHHHhCCCC---------------------------------------eEEEcch-hHHH
Q 017595 203 GFEQIKQLVDVGGGLGVTLNIITSRYPHI---------------------------------------EGVNFDL-PHVI 242 (369)
Q Consensus 203 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~ 242 (369)
+|.....++|-=||+|+++++.+...+++ .++++|+ +.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 47766899999999999999988887642 2669998 8888
Q ss_pred HhCCCC-------CCceEEeCCCCC-CCC--CCCEEEecccccc-CChhH-HH----HHHHHHHHhCCCCCEEEEEe
Q 017595 243 QNAPSY-------RGVKHIGGNMFE-RIP--KGDAILMKWILHN-WDDEH-CL----TLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 243 ~~a~~~-------~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~-~~d~~-~~----~~L~~~~~~L~pgG~lli~e 303 (369)
+.|+.. +.|+|..+|+.. .-+ ..|+||++----. +.++. .. .+.+.+.+.++--++.+++.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 876642 679999999976 333 3489888743111 22222 22 34444445555556666554
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.1 Score=41.68 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=65.1
Q ss_pred cCCcceEEEEcC-ChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCC---CCCCCCC-CCEEEeccccccC
Q 017595 204 FEQIKQLVDVGG-GLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGN---MFERIPK-GDAILMKWILHNW 277 (369)
Q Consensus 204 ~~~~~~vLDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~v~~~~vlh~~ 277 (369)
.....+|+=+|. |.|.++.++++..- .+++.+|. ++-.+.+++...-.++... ..+.... .|+++-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 345677877775 57789999999876 99999999 7767777766555555543 2222222 377765443 2
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..+....++|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 34677888999999999988764
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.48 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred CC-CHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KL-SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~-t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+ |..+||+.+++ ....+.+.|+.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 55 89999999999 999999999999999999764
|
|
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.45 Score=33.92 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=38.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|=|+|... |..+..+||..++. +++.++.+|..|+..|-+++.
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 44677776 58999999999999 999999999999999999875
|
|
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.38 Score=38.99 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=38.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
.+.+..+||+.+|+ ++..+++.|..|...|++.... | .++.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~---G-~~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR---G-KNGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec---C-CCCCeeecC
Confidence 47899999999999 9999999999999999998752 1 245677764
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.73 Score=41.86 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=54.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCe-EEEcch-hHHHHhCCCC-----CCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIE-GVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 260 (369)
..++++.+. .......+|.-=|.|+.+..+++++|... .+++|. |.+++.+++. +|+.++.++|.+
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 456677676 56669999999999999999999998765 999999 8888887752 588888887754
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.68 E-value=3.8 Score=34.79 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=73.1
Q ss_pred CcceEEEEcCChhHHHHHHHH----hCCCCeEEEcch--hHHHHhCCCCCCceEEeCCCCCC-CC-------C-C-CEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITS----RYPHIEGVNFDL--PHVIQNAPSYRGVKHIGGNMFER-IP-------K-G-DAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~----~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~~-~p-------~-~-D~v~ 269 (369)
++..|+++|.-.|..+..++. .....+++++|+ ...-..+.+.++|.|+.++-.++ +. . . -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999776665544433 233456766665 33334455578999999988773 21 1 1 5666
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE 311 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~ 311 (369)
+-..-|++ +.....|+-..++|.-|.++++-|...++-+.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCC
Confidence 66777777 77778888889999999999999998876553
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.38 Score=32.65 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++++..+||+.++. .+.-+...++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 59999999999999 999999999999999999874
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.7 Score=39.15 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=61.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhH----HHHHHHHh---CCCCeEEEcchhH-----HHHhCCCC-------CC--ceE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGV----TLNIITSR---YPHIEGVNFDLPH-----VIQNAPSY-------RG--VKH 253 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~---~p~~~~~~~D~~~-----~~~~a~~~-------~r--v~~ 253 (369)
..|++.+. -....+|+|+|.|.|. +...|+.+ -|.+++|+++.|. .++.+.+. -+ .+|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 46677776 4466899999999995 34445554 3778999999832 22222111 12 344
Q ss_pred EeC--CCCCCC-------CCCC--EEEeccccccCChhH------HHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 254 IGG--NMFERI-------PKGD--AILMKWILHNWDDEH------CLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 254 ~~~--d~~~~~-------p~~D--~v~~~~vlh~~~d~~------~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
... +-.+++ ..++ +|-+...||++.++. ...+|+. .+.|+|. .++++|.-.+.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPK-VVVLVEQEADH 248 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCC-EEEEEeecCCC
Confidence 332 211111 1133 334667789886332 3346655 4578997 56666665433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.23 Score=46.87 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=40.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNM 258 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~ 258 (369)
++.+++.++ ..+. ++||+=||.|.++..++..+. ++++++. +.+++.|+. .++++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 445555555 3333 799999999999999998875 5666676 666665543 26889988764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.47 Score=35.40 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 67 AAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 67 ~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+.+||+.+++ ++..+.+.|+.|...|+|... ....|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~------~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE------PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc------CCCceEechhHHHHH
Confidence 5689999999 999999999999999999974 235788888777654
|
iron dependent repressor |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.49 Score=37.09 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-.+.|+..|... +|.|+.|+|+..|- +...+.|-|+.|+..|++...
T Consensus 65 ~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 65 RNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred hHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 456788888886 59999999999999 999999999999999999864
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.27 Score=36.57 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=47.2
Q ss_pred hhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+||.|. .. +++..+.-|.-..++ +......+++.|+..|++.... +.....|.+|+.+..|+.
T Consensus 20 i~dIL~~~~--~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~---~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 20 IFDILKAIS--EGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQD---NGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHhc--CCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEecc---CCccceEEEChhHHHHHH
Confidence 355555 22 158889999999999 9999999999999999665431 112247999999998765
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.57 Score=37.78 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=37.7
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|++.|.. |..|..+||+++|+ .....+-.|..|...|.+.+.
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 46677733 58999999999999 899999999999999999876
|
|
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.56 Score=39.59 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=50.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|...+ +++.|..+||+.+++ +..-+.++++-|+..|+|.+...+.....-...+|+.+..++.
T Consensus 57 q~~iL~~L~~~~-~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQE-NHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 445666665421 247899999999999 9999999999999999999753321111235778888776664
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.24 Score=42.68 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=40.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC----C---CCceEEeCCCCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS----Y---RGVKHIGGNMFE 260 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~---~rv~~~~~d~~~ 260 (369)
....|+|.-||.|+.+..++.++|.+-.+..|. .-+.-|+. + +||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP-ikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP-VKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccH-HHHHHHhccceeecCCceeEEEechHHH
Confidence 457899999999999999999998655555553 33333332 1 799999999987
|
|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.31 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVL 98 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l 98 (369)
|+|-.|||+.+|+ ...-+.|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 999999999999999875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.78 Score=35.81 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=44.1
Q ss_pred HHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 45 QAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 45 ~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..+...|.+.+.+. |.+|+.+++..+|+ +-.-+.++|+.|++.|-|...
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 445677888999887 59999999999999 999999999999999988753
|
|
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=88.79 E-value=0.78 Score=36.00 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCCcccHHHHHHHHhcCccccccccCCC
Q 017595 28 YSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP-SRNPNTGVMLDRILRLLVTNRVLRCSLSSAG 106 (369)
Q Consensus 28 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 106 (369)
.+...+.+.+-|..-+|+... . |+....+|.+.++ + .+..|.+-|+.|+..|++.+..-+..
T Consensus 13 ~~~~l~~ig~kW~~lIl~~L~---------~----g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 13 VEEALEVIGGKWTLLILRDLF---------D----GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred HHHHHHHHcCccHHHHHHHHh---------c----CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 556677777777777665443 2 3889999999988 8 99999999999999999987422211
Q ss_pred CCCcceecChhchhhhc
Q 017595 107 DNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 107 ~~~~~y~~t~~~~~~~~ 123 (369)
...-.|++|+.+..+..
T Consensus 76 PprveY~LT~~G~~L~~ 92 (120)
T COG1733 76 PPRVEYRLTEKGRDLLP 92 (120)
T ss_pred CceeEEEEhhhHHHHHH
Confidence 12346888888876553
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.79 Score=35.52 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=44.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSR-NPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+.-|++.|...+ ++.|+++|.+.+.-. ++.+..-+.|.|+.|+..|++.+...++ ...+|..+
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~--~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGD--GKARYELN 66 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCC--CceEEEeC
Confidence 455788887642 589999999997321 1127788999999999999998753221 22567654
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.22 E-value=3.3 Score=39.55 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=62.0
Q ss_pred cCCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCC----CCC---CC-CC-C-CEEEec
Q 017595 204 FEQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGN----MFE---RI-PK-G-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d----~~~---~~-p~-~-D~v~~~ 271 (369)
.....+||.+|||. |..+..+++...-.+++.++. +...+.+++...+.++... +.+ .+ +. + |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 44567899999987 889999999886445777776 6666655544223333211 111 11 11 3 776543
Q ss_pred c---------------ccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 272 W---------------ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 272 ~---------------vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
- +|+..++ ....++.+.+.|+|+|++++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETD--RPDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccC--chHHHHHHHHHhccCCEEEEEcCC
Confidence 1 2222222 245788899999999999988643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.9 Score=30.87 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 65 LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 65 ~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|..+||+.+++ +...+.+.|..|...|++...
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~ 58 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVERR 58 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 459999999999 999999999999999999753
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.62 Score=38.55 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=39.1
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..|+++|... +.+|-++||..+|+ +..-++++|..|...|++..
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~ 60 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADY 60 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence 4578888754 58999999999999 99999999999999999964
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.4 Score=42.69 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=53.4
Q ss_pred CcceEEEEcCChhHHHH---HHHHhC--CCCeEEEcch-h---HHHH---------------------------hCCCC-
Q 017595 206 QIKQLVDVGGGLGVTLN---IITSRY--PHIEGVNFDL-P---HVIQ---------------------------NAPSY- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~---~l~~~~--p~~~~~~~D~-~---~~~~---------------------------~a~~~- 248 (369)
-++-|+|+||=.|..+. .+++.+ ++-++.++|. . ..-. ...++
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34799999998886554 344443 4456777773 2 1111 11111
Q ss_pred ---CCceEEeCCCCCCCCCC---CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 249 ---RGVKHIGGNMFERIPKG---DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 249 ---~rv~~~~~d~~~~~p~~---D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+++.++.|.|.+.+|.. .+.++.-=.--+ +-....|+.++..|.|||.+++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 47999999997655532 222222111112 44678999999999999988876643
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.87 Score=35.28 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcC
Q 017595 45 QAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLN 124 (369)
Q Consensus 45 ~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~ 124 (369)
.+-.++.++..|...+ +.+..+||+.+++ ++..+.++++-|...|+|.....+.....-.+.+|+.+..+...
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 3456677777887753 3444999999999 99999999999999999987533211112357888887766543
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.73 Score=40.17 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..+|..+||+.+++ ++..+.+.|+.|...|++.+...+ ....+.+|+.+..++.
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~---r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVP---RGQLITITEKGLDVLY 73 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcC---CceEEEECHHHHHHHH
Confidence 36899999999999 999999999999999999875211 3456888887776553
|
|
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=87.48 E-value=1 Score=38.27 Aligned_cols=68 Identities=15% Similarity=0.012 Sum_probs=50.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|... ++.|..+||+.+++ +..-+.++++-|...|+|.....+.....-...+|+.+..+..
T Consensus 47 q~~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 47 EHHILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 34667777665 48999999999999 8889999999999999998753221111235677877776654
|
|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.97 Score=29.75 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=33.2
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNR 96 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g 96 (369)
.|+..|.... +++|.++||+.+++ ..+-+.+.+..|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4666774432 47999999999999 9999999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.31 E-value=5.7 Score=37.47 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=65.0
Q ss_pred ceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCC-C------CC--CCC-CEEEeccccc
Q 017595 208 KQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMF-E------RI--PKG-DAILMKWILH 275 (369)
Q Consensus 208 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~-~------~~--p~~-D~v~~~~vlh 275 (369)
.+++=+||| .|.++..+++.+.-.++++.|. +.-++.|++......+.-.-. . .. +.+ |+++=+.-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 399999999 6778888888888889999999 888888876322222221111 0 11 223 88765544
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
....+..+.++++|||+++++-.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124788899999999999998887554
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=0.81 Score=45.32 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=54.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCC
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~ 125 (369)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|.+.|+|.... .....|.+|+.++.++...
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~----~~~~~i~LTeeG~~~~~~g 73 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE----RVEEVYVLTEEGKKYAEEG 73 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe----eeEEEEEECHHHHHHHHhc
Confidence 456677788764 48999999999999 9999999999999999998741 1236799999998776643
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.25 E-value=4.7 Score=36.73 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=57.2
Q ss_pred ceEEEEcCC--hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCC-CCCCCCCCEEEeccccccCChhHHH
Q 017595 208 KQLVDVGGG--LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNM-FERIPKGDAILMKWILHNWDDEHCL 283 (369)
Q Consensus 208 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~-~~~~p~~D~v~~~~vlh~~~d~~~~ 283 (369)
.+|+=+|.| .|.++..+.++.+...+++.|. ....+.+....-+.-...+. ......+|+|+++=-+ ....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-----EATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-----HHHH
Confidence 467778877 5667777888888888999998 55555555332222122222 2234445998876543 5567
Q ss_pred HHHHHHHHhCCCCCEE
Q 017595 284 TLLKNCYEAIPENGKI 299 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~l 299 (369)
.+++++...|+||..+
T Consensus 79 ~~l~~l~~~l~~g~iv 94 (279)
T COG0287 79 EVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHhcccCCCCCEE
Confidence 8999999999998643
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=85.19 E-value=1.1 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=42.7
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..+..|++.|..+ +..|..+||+++|+ .+.-+.+=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 4678899999886 58999999999999 99999999999999999974
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=85.10 E-value=1.2 Score=40.12 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=49.5
Q ss_pred HHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCE
Q 017595 220 TLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGK 298 (369)
Q Consensus 220 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ 298 (369)
++.+|.++.++.++++.|. +..++.+.+..-+.-...+ .+.+...|+|+++-- ......+|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP-----~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVP-----VSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCC-----HHHHHHHHHHhhhhcCCCcE
Confidence 4678888999999999998 7777777555444333332 223344599887653 35677888888888888865
Q ss_pred EEE
Q 017595 299 III 301 (369)
Q Consensus 299 lli 301 (369)
+.=
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=84.75 E-value=1.1 Score=31.97 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=42.8
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..+..+++.|...+. .+.+..+|+..++. +++.+...++.|...|++.+.
T Consensus 2 ~~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 2 DIQYCLLERIARSRY-NGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred chHHHHHHHHHhcCC-CCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 356678888887543 47899999999999 999999999999999999863
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.84 Score=36.76 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred eEEEcch-hHHHHhCCCC-------CCceEEeCCCCC---CCCC-C-CEEEeccccccCC---------hhHHHHHHHHH
Q 017595 232 EGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE---RIPK-G-DAILMKWILHNWD---------DEHCLTLLKNC 289 (369)
Q Consensus 232 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~-~-D~v~~~~vlh~~~---------d~~~~~~L~~~ 289 (369)
++.+||+ ++.++.+++. +||+++..+=.. -++. . |+++++.- ++| .+.....|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 4678898 7777766542 578888875543 3455 3 77776532 233 23466889999
Q ss_pred HHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 290 YEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 290 ~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.|+|||.+.|+--.-.+.. .... ....+|.+-|....|.+.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG----~eE~-----------------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGG----KEES-----------------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHH----HHHH-----------------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCC----HHHH-----------------HHHHHHHHhCCcceEEEEEEEccC
Confidence 999999999988765432211 0000 013345555566678888777765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=1 Score=37.54 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=43.3
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
-.++..|+..|.++ +..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 13 D~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34788999999885 59999999999999 99999999999999999974
|
|
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
Probab=84.15 E-value=0.95 Score=34.32 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHhChhHHHHh-cCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 47 AAELGVFEIIAK-AGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 47 a~~lglfd~L~~-~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+.-.||+.|.. ...+.++++++|++++++ +..-++..|+.|...|++-.
T Consensus 47 ~~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 47 PLQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 345566777766 212348999999999999 99999999999999998853
|
RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.70 E-value=2.7 Score=40.54 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=60.4
Q ss_pred CcceEEEEcCChh--HHHHHHHHhCCCCeEEEcch-hHHHHhCCC------C-CCceEEeCCCCC---CCC--C-CCEEE
Q 017595 206 QIKQLVDVGGGLG--VTLNIITSRYPHIEGVNFDL-PHVIQNAPS------Y-RGVKHIGGNMFE---RIP--K-GDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~---~~p--~-~D~v~ 269 (369)
.+..+.|+|.|.| ..+..++-+...-.++.+|. ..+...... + .++.+....++. +.+ . .|+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3467788887644 55555555544445788887 444443322 1 222222213333 332 2 39999
Q ss_pred eccccccCChhH-HHHHHHH-HHHhCCCCCEEEEEeccCC
Q 017595 270 MKWILHNWDDEH-CLTLLKN-CYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 270 ~~~vlh~~~d~~-~~~~L~~-~~~~L~pgG~lli~e~~~~ 307 (369)
++++||+++... ...+.++ .++..++|+.++|+|....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999986544 2334443 4566789999999998543
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.6 Score=42.62 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=47.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCC--CCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMP--SRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+.|+..|.. ++.++-||++.++ + .+..+.+.|+.|...|+|+...+. + ....|++|+.+..++
T Consensus 374 ~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~-g-~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 374 LEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRK-G-RRVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecC-C-CcEEEEECcHHHHHH
Confidence 335666665 4899999999998 7 888999999999999999753111 1 234699998877554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=83.11 E-value=8.3 Score=35.40 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=38.4
Q ss_pred CcceEEEEcCChhH-HHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeC----CCCCCCC---CC-CE
Q 017595 206 QIKQLVDVGGGLGV-TLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGG----NMFERIP---KG-DA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~----d~~~~~p---~~-D~ 267 (369)
...++||||+|... +..--++.+ ++++++-|+ +..++.|++ .++|+++.. +++..+- +. |+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 35799999999764 333334444 899999998 777776653 257877754 4555321 22 89
Q ss_pred EEeccccccCC
Q 017595 268 ILMKWILHNWD 278 (369)
Q Consensus 268 v~~~~vlh~~~ 278 (369)
.+|.--+|.=.
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99999888643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=82.87 E-value=1.5 Score=35.76 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=43.0
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..+..|++.|... ++.+..+||+++|+ .+..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 4577889999985 58999999999999 999999999999999999854
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.80 E-value=3.1 Score=42.94 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=54.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhC-------C-----CCeEEEcch-h---HHHHhCC----------------------C
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRY-------P-----HIEGVNFDL-P---HVIQNAP----------------------S 247 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 247 (369)
..-+|+|+|=|+|......++.. | .++++.++. | ..+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999998666655433 4 467777774 3 1111110 0
Q ss_pred C-------C--CceEEeCCCCCC---CCC-CCEEEeccc-cccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 248 Y-------R--GVKHIGGNMFER---IPK-GDAILMKWI-LHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 248 ~-------~--rv~~~~~d~~~~---~p~-~D~v~~~~v-lh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
. . ++++.-||+.+- +.. .|++++-.. -..-|+=-...+|+.+++.++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0 1 234556776552 222 377765421 11111111347888888888988887743
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.78 E-value=5.3 Score=35.20 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=65.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-----hHHHHhCCCCCCceEEeCCCCCCCCC----C--CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-----PHVIQNAPSYRGVKHIGGNMFERIPK----G--DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p~----~--D~v~~~ 271 (369)
++...+||-+|.++|....++... .|+--+..++. -..+..|+++++|.-+.-|...|..= + |+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 456789999999999999998877 34433333333 24566777788888888888775421 2 65543
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.+- .+++++-+.-++.--||+||.++|.
T Consensus 233 Dva---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 DVA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred cCC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 332 2244556666788899999988875
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.37 E-value=3.5 Score=36.75 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=68.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCC--CC-CEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIP--KG-DAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p--~~-D~v~~~~vlh~~~d~~ 281 (369)
.....-+|+|.-.|.++..|.++ ++.++.+|...+.+.....++|+....|-|+-.| .. |-.+|-.| ++
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------Ek 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------EK 281 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------cC
Confidence 36789999999999999999987 5889999998888777778899999999988444 33 77777766 55
Q ss_pred HHHHHHHHHHhCCCC
Q 017595 282 CLTLLKNCYEAIPEN 296 (369)
Q Consensus 282 ~~~~L~~~~~~L~pg 296 (369)
..++-+.+..+|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 667777778888766
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=82.10 E-value=3 Score=29.81 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=42.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.|+...+||+.++. ++.-++--+..|.++|+|+... ...+.|..|..+..++.
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p----~~s~GriPT~~aYr~~~ 74 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP----HPSGGRIPTDKAYRALN 74 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC----CCCCCCCcCHHHHHHHc
Confidence 59999999999999 9999999999999999998421 12467777777665543
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.83 E-value=1.3 Score=38.10 Aligned_cols=44 Identities=30% Similarity=0.449 Sum_probs=36.2
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|.+.|.. ++.+.|.+|+|+++|+ ..--.+|+|.+|++.|++...
T Consensus 163 i~~~~~~--~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKE--PDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhC--cCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 3344542 2359999999999999 899999999999999999853
|
|
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=81.66 E-value=2 Score=34.49 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
|++|.+|||-++|. ..+.+...|.++++-|-+.+..
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEec
Confidence 69999999999999 9999999999999999998763
|
The region in question is approximately 150 amino acid residues long. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=81.58 E-value=1.3 Score=43.23 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=56.7
Q ss_pred HHHhChhHHHHhcCCCCC-CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCC
Q 017595 47 AAELGVFEIIAKAGPGAK-LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~-~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~ 125 (369)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++.... ....|.+|..+..++...
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~----~~~~~~LT~eG~~~l~~G 71 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI----KRETWVLTEEGKKYAAEG 71 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE----EEEEEEECHHHHHHHHcC
Confidence 5677888888874 34 799999999999 99999999999999999976521 357899999999777654
Q ss_pred C
Q 017595 126 D 126 (369)
Q Consensus 126 ~ 126 (369)
.
T Consensus 72 ~ 72 (492)
T PLN02853 72 S 72 (492)
T ss_pred C
Confidence 3
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=81.28 E-value=1.2 Score=33.88 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=33.5
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-|++.|... |.++-++||..+++ ++.-++++|..|...|++...
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 467888754 48999999999999 999999999999999999753
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=81.19 E-value=2.1 Score=32.05 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
.++|-.|||+.+|+ +..-+.|.|+.|...|+|.... ..+.+..|
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~-----~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG-----MMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec-----CCceeecC
Confidence 38999999999999 9999999999999999998641 23566655
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.13 E-value=4 Score=36.74 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-----CCCeEEEcchh
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-----PHIEGVNFDLP 239 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 239 (369)
+.+...++|+|||.|.++..+.... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 5677899999999999999999998 56788999983
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.10 E-value=9 Score=38.06 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=60.5
Q ss_pred CcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC--------------C--------
Q 017595 206 QIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE--------------R-------- 261 (369)
Q Consensus 206 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~--------------~-------- 261 (369)
...+|+=+|+|. |..+...++... .+++++|. +...+.+++. ..+++..|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 468999999994 566667776664 58999998 8888877664 22322211110 1
Q ss_pred ----CCCCCEEEeccccccCChhHHHHH-HHHHHHhCCCCCEEEEEec
Q 017595 262 ----IPKGDAILMKWILHNWDDEHCLTL-LKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 262 ----~p~~D~v~~~~vlh~~~d~~~~~~-L~~~~~~L~pgG~lli~e~ 304 (369)
....|+++-.--.-. ..+..+ .++..+.|||||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 122498887665322 212244 5999999999999887654
|
|
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.87 E-value=1.8 Score=38.85 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=42.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+..+.++|.+.| |-.+=+||.+++|+ +..-+.|.|+-|+..|++++.+
T Consensus 197 e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 456788888765 67999999999999 9999999999999999999864
|
|
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=80.49 E-value=2.7 Score=35.24 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCCHHHHHHhC--CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 64 KLSAAQIAAQM--PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 64 ~~t~~~La~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
..++++||+++ ++ ...-++.-|+.|...|++.++ ++|.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~------~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD------GDGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC------CCCcEEEecceee
Confidence 34999999999 88 999999999999999999986 4578998865443
|
|
| >COG3413 Predicted DNA binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.25 E-value=1.4 Score=38.38 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLL 92 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L 92 (369)
.-.+|+.|.+.|-||. +. ..+..+||+.+|+ .+.-+...||-.
T Consensus 160 Q~~vL~~A~~~GYFd~-PR-----~~~l~dLA~~lGI----Skst~~ehLRrA 202 (215)
T COG3413 160 QLEVLRLAYKMGYFDY-PR-----RVSLKDLAKELGI----SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 4569999999999999 54 6899999999999 676666666644
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.03 E-value=9.2 Score=35.27 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=49.6
Q ss_pred cceEEEEcCCh-h-HHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHH
Q 017595 207 IKQLVDVGGGL-G-VTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCL 283 (369)
Q Consensus 207 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 283 (369)
..+|.=||+|. | .++..+.+.....+++++|. +...+.+.+..-......+..+.....|+|+++-- .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899885 3 34444544433346788887 55555544332111111121112334588876653 23445
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 017595 284 TLLKNCYEAIPENGKIII 301 (369)
Q Consensus 284 ~~L~~~~~~L~pgG~lli 301 (369)
.+++.+...++||+.++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 677888888888875543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 369 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-105 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 7e-97 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 4e-91 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 2e-64 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 5e-55 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 3e-27 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 8e-27 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 2e-26 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-26 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 2e-26 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 5e-24 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-12 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 2e-12 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 3e-12 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 2e-11 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 4e-11 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 2e-10 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 5e-09 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 1e-07 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 416 bits (1070), Expect = e-145
Identities = 174/372 (46%), Positives = 250/372 (67%), Gaps = 9/372 (2%)
Query: 1 MDSSAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAG 60
M S+ + + ++E+ FAMQLA + VLP +++AA EL V EI+AK+
Sbjct: 1 MGSTGNAEI------QIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSV 54
Query: 61 -PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL--SSAGDNQRLYSLAPV 117
P +S A+IAAQ+P+ NP VMLDR+LRLL + V+ +L +G +RLY LAPV
Sbjct: 55 PPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPV 114
Query: 118 AKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSR 177
K+ N+DGVSL P L +A D+ +L+ W+ L DA+L+GGIPFNK +GM +++Y G D R
Sbjct: 115 CKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHR 174
Query: 178 FNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFD 237
N VFNK M ++++I M +IL+ YNGFE + +VDVGGG G ++I ++YP I +NFD
Sbjct: 175 INKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFD 234
Query: 238 LPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENG 297
LPHVIQ+AP++ GV+H+GG+MF+ +PKGDAI +KWI H+W DEHCL LLKNCY A+P++G
Sbjct: 235 LPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHG 294
Query: 298 KIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357
K+I+ + + +P+ + A + TD +ML GG+ERT +EF ALA +GF G
Sbjct: 295 KVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVAS 354
Query: 358 FVCNFCIIEFIK 369
N ++EF+K
Sbjct: 355 CAFNTYVMEFLK 366
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-142
Identities = 171/356 (48%), Positives = 232/356 (65%), Gaps = 4/356 (1%)
Query: 17 EEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP- 75
+ +ED FA+QLA S VLP +++ A ELG+ EI+ AG + L+ ++AA++P
Sbjct: 10 ADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKS-LTPTEVAAKLPS 68
Query: 76 SRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQ--RLYSLAPVAKYFVLNQDGVSLCPL 133
+ NP M+DRILRLL + V+ C + D + R Y APV K+ N+DGVS+ L
Sbjct: 69 AANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAAL 128
Query: 134 LAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIV 193
M D+ +++ WY L DAVL GGIPFNK +GM +EY G D RFN VFN+ M NH+ I+
Sbjct: 129 ALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIII 188
Query: 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKH 253
++L+ Y+GFE + LVDVGGG+G T+ I + YP I+GVNFDLPHVI AP + GV H
Sbjct: 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH 248
Query: 254 IGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT 313
+GG+MF+ +P GD ILMKWILH+W D+HC TLLKNCY+A+P +GK++++ + V PEA
Sbjct: 249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN 308
Query: 314 AAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
+++ D+IML GGRER +EF ALA AGF GV N IEF K
Sbjct: 309 PSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 399 bits (1026), Expect = e-139
Identities = 142/376 (37%), Positives = 223/376 (59%), Gaps = 11/376 (2%)
Query: 1 MDSSAKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAG 60
M +S T+ ++ + E+ E+ AM L ++V PA + AA +L +FEIIAKA
Sbjct: 1 MGNSYITKEDNQISATSEQTED---SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT 57
Query: 61 -PGAKLSAAQIAAQMP--SRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLA 115
PGA +S ++IA+++P +++ + LDR+LRLL + VL + + D +R+Y L+
Sbjct: 58 PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLS 117
Query: 116 PVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGI-PFNKVHGMGVYEYAGN 174
V KY V ++ L A+L +W +AV+ I F VHG+ YE+ G
Sbjct: 118 MVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGK 177
Query: 175 DSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGV 234
D + N +FNK+M++ + M R+L+ Y GFE I LVDVGGG G L +I S+YP I+G+
Sbjct: 178 DKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGI 237
Query: 235 NFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIP 294
NFDLP VI+NAP G++H+GG+MF +P+GDA+++K + HNW DE C+ L NC++A+
Sbjct: 238 NFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALS 297
Query: 295 ENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354
NGK+II++ + P + ++ S D +M + GGRERT +++ L+ +GF+
Sbjct: 298 PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQ 356
Query: 355 YECFVCN-FCIIEFIK 369
C N ++EF K
Sbjct: 357 VACRAFNSLGVMEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 363 bits (934), Expect = e-125
Identities = 90/356 (25%), Positives = 157/356 (44%), Gaps = 14/356 (3%)
Query: 16 EEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP 75
+ + + + + S++ A E+ + II G LS Q+P
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 76 SRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLA 135
S + R++R L N + Y+L ++ V D L P++
Sbjct: 65 SSKIG---NVRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDL-CLAPMVE 116
Query: 136 MAGDQAILDIWYKLADAVLQGGI-PFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVM 194
D + +++L + + + F G G +++ + +N FN AM + + ++
Sbjct: 117 CVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN 176
Query: 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHI 254
+ D F+ ++ +VDVGGG G T II +P ++ + FD P V++N + ++
Sbjct: 177 LALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYV 236
Query: 255 GGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPEN---GKIIIIDRMPMVTPE 311
GG+MF IP DA+L+K+ILHNW D+ CL +LK C EA+ + GK+ IID + +
Sbjct: 237 GGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 296
Query: 312 ATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEF 367
+ + D+ M G+ER +E+ L EAGF +IE
Sbjct: 297 ENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEI 350
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 357 bits (918), Expect = e-123
Identities = 99/360 (27%), Positives = 167/360 (46%), Gaps = 16/360 (4%)
Query: 19 EEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRN 78
EE + + V ++++A ELG+ + I G + +++A+ + +
Sbjct: 2 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPM--TLSELASSLKL-H 58
Query: 79 PNTGVMLDRILRLLVTNRVLRCSLSSAGDN----QRLYSLAPVAKYFVLNQDGVSLCPLL 134
P+ +L R LRLL N ++ + + YSL P +K + + L ++
Sbjct: 59 PSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIV 117
Query: 135 AMAGDQAILDIWYKLADAVLQGG--IPFNKVHGMGVYEYAGNDSRFN--GVFNKAMLNHT 190
A + LD+W + F G +++ DS + +F AM + +
Sbjct: 118 KGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDS 177
Query: 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRG 250
+ + ++ FE ++ LVDVGGG G +I +PH++ FD P V+ N
Sbjct: 178 RMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNEN 237
Query: 251 VKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIP---ENGKIIIIDRMPM 307
+ +GG+MF+ IP DA+L+KW+LH+W+DE L +LKN EAI ++GK+IIID
Sbjct: 238 LNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297
Query: 308 VTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEF 367
T + D++ML F G+ERT QE+ L +AGF+ +IE
Sbjct: 298 ETSDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEV 356
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-121
Identities = 82/353 (23%), Positives = 141/353 (39%), Gaps = 27/353 (7%)
Query: 19 EEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRN 78
+ + + + AM A+++AAA +GV + + GP + A++AA + +
Sbjct: 14 GGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV-DGP---RTPAELAAATGT-D 68
Query: 79 PNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAG 138
+ L R+LRLL V+R S ++L + V + M
Sbjct: 69 AD---ALRRVLRLLAVRDVVRES-------DGRFALTDKGAALR-SDSPVPARAGILMFT 117
Query: 139 DQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRIL 198
D + +++A A+ F + G + Y D+ ++ + M ++ +
Sbjct: 118 DTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILA 177
Query: 199 DSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRG-----VKH 253
+ F + DVGGG G L + +P ++GV D V+ K
Sbjct: 178 RAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKV 236
Query: 254 IGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT 313
+ G+ +P D ++K ILHNW DE + +L NC +P +G++++ID V PE
Sbjct: 237 VEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID---AVVPEGN 293
Query: 314 AAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIE 366
A + M D +ML G+ERT E L AG I
Sbjct: 294 DAHQSKEM-DFMMLAAR-TGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAV 344
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-121
Identities = 79/374 (21%), Positives = 147/374 (39%), Gaps = 30/374 (8%)
Query: 5 AKTQHKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAK 64
+ H E + ++ A ELGV E++ + GP
Sbjct: 16 PRGSHMTVEQTPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GP--- 71
Query: 65 LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLN 124
+A +A + + L R+LRLL T V + L++ ++ + +
Sbjct: 72 RTATALAEATGA-HEQ---TLRRLLRLLATVGVFDDL-----GHDDLFAQNALSAVLLPD 122
Query: 125 QDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNK 184
+ W +L +V G F+ +G ++ D + +FN+
Sbjct: 123 -PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNR 181
Query: 185 AMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQN 244
AM + + ++ +Y+ F VD+GGG G + + +P + G + P V +
Sbjct: 182 AMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEE 240
Query: 245 APSYR-------GVKHIGGNMFERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPEN 296
A + + G+ FE IP G D L+K +LH+WDD+ + +L+ A+ +
Sbjct: 241 ARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPD 300
Query: 297 GKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN-Y 355
++++ID + E A D+++L+ GG ER+ EF AL ++G
Sbjct: 301 SRLLVID---NLIDE--RPAASTLFVDLLLLVLV-GGAERSESEFAALLEKSGLRVERSL 354
Query: 356 ECFVCNFCIIEFIK 369
C I+E +
Sbjct: 355 PCGAGPVRIVEIRR 368
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-120
Identities = 83/365 (22%), Positives = 142/365 (38%), Gaps = 31/365 (8%)
Query: 19 EEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRN 78
E E + ++ ++V P +++ AA L + + + AG + A +A + + +
Sbjct: 8 EPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGA---DTLAGLADRTDT-H 62
Query: 79 PNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAG 138
P L R++R L VL R + L + G
Sbjct: 63 PQ---ALSRLVRHLTVVGVLEG----GEKQGRPLRPTRLGMLLADGHPA-QQRAWLDLNG 114
Query: 139 DQAILDI-WYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRI 197
+ D+ + L D V G + +G +E D F+ M +
Sbjct: 115 AVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAP 174
Query: 198 LDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYR-------G 250
D+Y + ++ ++DVGGG G L I R PH+ G +L + A
Sbjct: 175 ADAY-DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADR 233
Query: 251 VKHIGGNMFERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309
V G+ F+ +P D +L+ ++L NW DE LT+L+ C A+ G+++++D
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD--RADV 291
Query: 310 PEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV-----NYECFVCNFCI 364
A +++ D+ ML GGR RT E + LA AG +F I
Sbjct: 292 EGDGADRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSI 350
Query: 365 IEFIK 369
+EF
Sbjct: 351 LEFTA 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 346 bits (890), Expect = e-119
Identities = 82/348 (23%), Positives = 145/348 (41%), Gaps = 34/348 (9%)
Query: 30 FAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRIL 89
++ + P +++ AA L V + IA AG +AA+IA+ + + + LDR+L
Sbjct: 8 IGLRALADLATPMAVRVAATLRVADHIA-AGH---RTAAEIASAAGA-HAD---SLDRLL 59
Query: 90 RLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDI-WYK 148
R LV + D Q +Y L + + L M D+ + +
Sbjct: 60 RHLVAVGLFTR------DGQGVYGLTEFGEQLRDDHAA-GKRKWLDMNSAVGRGDLGFVE 112
Query: 149 LADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIK 208
LA ++ G + +G +E G+D + F+ M +H + I Y + +
Sbjct: 113 LAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY-DWAALG 171
Query: 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYR-------GVKHIGGNMFER 261
+VDVGGG G L+ + + + + G DL A + + G+ F+
Sbjct: 172 HVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231
Query: 262 IPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
+P G ++ +LH+WDD + +L+ C EA G +++I+ V + +
Sbjct: 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIE---AVAGD----EHAGT 284
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFI 368
D+ ML F GG+ER+ E LA +AG + I+E
Sbjct: 285 GMDLRMLTYF-GGKERSLAELGELAAQAGLAVRAAHP-ISYVSIVEMT 330
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-118
Identities = 72/365 (19%), Positives = 135/365 (36%), Gaps = 32/365 (8%)
Query: 16 EEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP 75
E ++ + S+ P ++ AA L + + I AG + +AA+
Sbjct: 8 EPTVAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL-AGA---RTVKALAARTD 63
Query: 76 SRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLA 135
+ P L R++R LV +L D + V + +
Sbjct: 64 T-RPE---ALLRLIRHLVAIGLLEE------DAPGEFVPTEVGELLADDHPAAQRAWHDL 113
Query: 136 MAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMN 195
+ +L DA+ G + ++G YE F+ + + +
Sbjct: 114 TQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFD 173
Query: 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYR------ 249
+Y + ++ ++DVGGG G I R PH+ ++ + A SY
Sbjct: 174 APAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLS 232
Query: 250 -GVKHIGGNMFERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307
V + G+ FE +P+ DAI++ ++L NW D + +L C EA+ G+I+I +
Sbjct: 233 DRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE---R 289
Query: 308 VTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN-----YECFVCNF 362
+ + + D+ ML+ GG RT +++ LA AG +
Sbjct: 290 DDLHENSFNEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDL 348
Query: 363 CIIEF 367
++
Sbjct: 349 SLLVL 353
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-114
Identities = 76/357 (21%), Positives = 132/357 (36%), Gaps = 33/357 (9%)
Query: 21 EENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPN 80
+ +Q+ + A LG+ ++I G S +AA + S +
Sbjct: 2 NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GI---DSDETLAAAVGS-DAE 56
Query: 81 TGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQ 140
+ R++RLLV + + D + Y+ P + + S ++ G++
Sbjct: 57 ---RIHRLMRLLVAFEIFQG------DTRDGYANTPTSHLLRDVEG--SFRDMVLFYGEE 105
Query: 141 AILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDS 200
W +A+L G F G Y Y F AM +++ + I
Sbjct: 106 -FHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRL 163
Query: 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYR-------GVKH 253
+ + + VDVGGG G I P GV D + A V
Sbjct: 164 LDF--RGRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSL 221
Query: 254 IGGNMFERIP-KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA 312
+GG+M + +P GD L+ I+ + D+ L LL NC EA+ +G++++I+ +
Sbjct: 222 VGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE---RTISAS 278
Query: 313 TAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
+ D+ + M GR RTT+E + L GF +I +
Sbjct: 279 EPSPMSVLW-DVHLFMAC-AGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 2e-96
Identities = 62/331 (18%), Positives = 121/331 (36%), Gaps = 32/331 (9%)
Query: 32 MQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRL 91
+ A+++AA EL VF I++ G S+ +A + + + + +
Sbjct: 11 FNTVNAYQRSAAIKAAVELNVFTAISQ-GI---ESSQSLAQKCQT-SER---GMRMLCDY 62
Query: 92 LVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLAD 151
LV + + Y L + F+ Q + + I + + L
Sbjct: 63 LVIIGFMTK------QAEG-YRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTA 115
Query: 152 AVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLV 211
AVL+GG + + +F + M N ++ + ++ E +K ++
Sbjct: 116 AVLKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNEN--KIEPLK-VL 170
Query: 212 DVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRG-------VKHIGGNMFER--I 262
D+ G+ + P+ E D V++ A I G+ FE
Sbjct: 171 DISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG 230
Query: 263 PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT 322
D +L+ LH++D C LL+ A+ GK+I+ D + +A+
Sbjct: 231 NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD---FIPNSDRITPPDAAAF 287
Query: 323 DIIMLMQFSGGRERTTQEFMALANEAGFNGV 353
++ML G T E+ ++ + AGF+
Sbjct: 288 SLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 1e-95
Identities = 71/382 (18%), Positives = 139/382 (36%), Gaps = 42/382 (10%)
Query: 5 AKTQHKHKH------NEEEEEEEENEEDTYSFAMQLAMS-IVLPASMQAAAELGVFEIIA 57
+ H H H + + Y A +L ++ + M+AA EL +F +A
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMA 61
Query: 58 KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117
+ GP A +AA S P L+ +L L RV+ +SL
Sbjct: 62 E-GP---KDLATLAADTGS-VPP---RLEMLLETLRQMRVINLE-------DGKWSLTEF 106
Query: 118 AKYFVLNQDGVSLCPLLAMAGDQAIL--DIWYKLADAVLQGGIPFNKVHGMGVYEYAGND 175
A Y +A A L D + L+ AV +G F G Y
Sbjct: 107 ADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAV-RGQKNFK-----GQVPYPPVT 160
Query: 176 SRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVN 235
N F + ++ + +L+ + +K+++DVGGG+G + +P ++
Sbjct: 161 REDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTI 219
Query: 236 FDLPHVIQNAPSYRG-------VKHIGGNMF-ERIPKGDAILMKWILHNWDDEHCLTLLK 287
+LP I ++ I +++ E P+ DA+L IL++ +++ + K
Sbjct: 220 LNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK 279
Query: 288 NCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347
++A+ G+++I+D + + M + + +
Sbjct: 280 KAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS--VLGFKEQARYKEILES 337
Query: 348 AGFNGVNYECFVCNFCIIEFIK 369
G+ V + +++ +K
Sbjct: 338 LGYKDVTMVR-KYDHLLVQAVK 358
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 263 bits (675), Expect = 4e-86
Identities = 49/333 (14%), Positives = 114/333 (34%), Gaps = 38/333 (11%)
Query: 32 MQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRL 91
++L+ A + A +F++ + A++AA +L
Sbjct: 29 VKLSDQYRQSAILHYAVADKLFDLTQTG-----RTPAEVAASFGM-VEG---KAAILLHA 79
Query: 92 LVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLAD 151
L +L + + + + ++ + P++ Q D W +L +
Sbjct: 80 LAALGLLTK------EGDA-FRNTALTERYLTTTSADYIGPIVEHQYLQ--WDNWPRLGE 130
Query: 152 AVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLV 211
+ K +D+R FN AM+ + +++ + + F + + ++
Sbjct: 131 ILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG-VFARARTVI 184
Query: 212 DVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRG-------VKHIGGNMFERIP- 263
D+ GG G L + R+P + G +DLP A V+ N+ +
Sbjct: 185 DLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF 244
Query: 264 ---KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
D +++ LH +D ++ + + G ++I+ M + ++
Sbjct: 245 EGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT---MTMNDDRVTPALSA 301
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGFNGV 353
+ M++ + G T + +AG
Sbjct: 302 DFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 2e-84
Identities = 54/350 (15%), Positives = 119/350 (34%), Gaps = 32/350 (9%)
Query: 18 EEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR 77
+E+ + A ++A V+ + + G+F++++ G + +I+ +
Sbjct: 6 TKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREG--YTLQEISGRTGLT 63
Query: 78 NPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMA 137
+L +T + + R Y LA + + ++ +
Sbjct: 64 RY----AAQVLLEASLTIGTILL------EEDR-YVLAKAGWFLLNDK---MARVNMEFN 109
Query: 138 GDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAG---NDSRFNGVFNKAMLNHTSIVM 194
D + L +A+L G KV G Y G + + ++
Sbjct: 110 HDVNYQG-LFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF 168
Query: 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRG---- 250
+ L+ K+L+D+GG G +E DLP ++
Sbjct: 169 GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG 227
Query: 251 ---VKHIGGNMFER---IPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303
+ G N+ +R P G DA+ M L + +E +++L ++I ++ K+ I++
Sbjct: 228 SERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287
Query: 304 RMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV 353
+ TA+ ++ M + + + + AG
Sbjct: 288 TLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE 337
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 20/187 (10%)
Query: 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVI----QNAPSYRG 250
+ + + ++D+G G G+ + +YP D+ ++
Sbjct: 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK 93
Query: 251 VKHIGGNMFERIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308
VK+I + + + D ++ +H+ +DE L K Y + E+G I D +
Sbjct: 94 VKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153
Query: 309 TPEATAAAREASM----TDIIMLMQFSGGRER-------TTQEFMALANEAGFNGVNYEC 357
T + + + + G ER + + EAGF V C
Sbjct: 154 TAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDV--SC 211
Query: 358 FVCNFCI 364
+
Sbjct: 212 IYKYYQF 218
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-07
Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 26/184 (14%)
Query: 183 NKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDLPHV 241
+ +N + + R L +D G G+G + ++ V+
Sbjct: 56 SSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT-EDF 114
Query: 242 IQNAPSY------RGVKHIGGNMFERIPKG---DAILMKWILHNWDDEHCLTLLKNCYEA 292
+ A +Y R + + + P+ D I ++W++ + D+H L+ C +
Sbjct: 115 LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174
Query: 293 IPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNG 352
+ NG I+I D M ++S+ R + AG +
Sbjct: 175 LRPNGIIVIKD--NMAQEGVILDDVDSSVC-------------RDLDVVRRIICSAGLSL 219
Query: 353 VNYE 356
+ E
Sbjct: 220 LAEE 223
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 9e-07
Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 21/150 (14%)
Query: 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNA----PSYRGVKHIGGNMFE-RI 262
+ +D G G+G + ++ + + H+++ A K I +M +
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL 154
Query: 263 PKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS 320
P D I+++W D + K+C +A+ NG I + ++S
Sbjct: 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS-TGDRFLVDKEDSS 213
Query: 321 MTDIIMLMQFSGGRERTTQEFMALANEAGF 350
+T R+ + L NE+G
Sbjct: 214 LT-------------RSDIHYKRLFNESGV 230
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII 325
D I+ + H+ D+ + + + + GKI+ D + A
Sbjct: 108 DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFH 167
Query: 326 MLMQFSGGRERTTQEFMA-LANEAGFN 351
L T M + GF+
Sbjct: 168 QLANDLQTEYYTRIPVMQTIFENNGFH 194
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.75 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.74 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.74 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.72 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.72 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.72 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.71 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.7 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.69 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.68 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.68 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.67 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.67 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.67 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.67 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.66 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.66 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.66 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.65 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.65 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.65 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.63 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.62 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.62 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.61 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.61 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.59 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.59 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.58 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.55 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.53 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.53 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.5 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.5 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.49 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.49 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.48 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.48 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.48 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.47 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.47 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.47 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.46 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.45 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.44 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.44 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.43 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.43 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.42 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.42 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.42 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.41 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.35 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.35 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.34 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.32 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.32 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.32 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.32 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.3 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.29 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.29 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.29 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.28 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.28 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.28 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.27 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.27 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.26 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.25 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.25 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.24 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.24 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.24 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.23 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.23 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.23 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.23 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.23 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.22 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.22 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.22 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.22 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.22 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.21 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.21 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.21 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.2 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.2 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.2 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.2 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.2 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.19 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.18 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.18 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.17 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.16 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.14 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.14 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.13 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.13 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.13 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.13 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.12 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.11 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.1 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.08 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.07 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.07 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.07 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.07 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.07 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.06 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.06 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.06 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.05 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.05 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.05 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.04 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.04 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.03 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.02 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.02 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.0 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.0 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.0 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.99 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.99 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.97 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.96 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.95 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.94 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.94 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.94 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.93 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.92 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.92 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.91 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.91 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.91 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.9 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.9 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.9 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.89 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.89 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.88 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.88 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.88 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.88 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.87 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.87 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.87 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.86 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.83 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.83 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.82 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.82 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.82 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.82 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.81 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.77 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.73 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.72 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.72 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.72 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.71 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.71 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.7 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.7 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.67 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.67 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.63 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.62 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.56 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.55 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.55 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.51 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.51 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.46 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.46 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.45 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.41 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.38 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.38 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.37 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.36 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.35 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.34 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.32 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.31 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.29 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.29 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.28 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.28 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.27 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.25 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.24 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.23 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.22 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.21 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.16 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.15 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.14 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.1 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.09 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.04 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.04 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.89 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.85 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.82 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.8 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.79 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.78 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.72 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.71 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.67 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.63 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.56 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.55 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.54 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.46 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.42 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.42 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.39 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.37 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.31 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.19 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.18 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.17 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.17 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.16 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.13 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.11 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 96.95 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.86 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.82 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.79 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.73 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.58 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.56 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 96.56 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.25 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.23 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.2 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.14 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.11 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.09 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.93 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 95.88 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 95.87 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 95.85 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 95.77 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 95.76 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 95.75 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.75 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 95.69 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 95.61 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.54 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 95.53 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 95.47 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.46 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.43 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.41 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.4 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.39 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.36 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.36 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 95.35 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 95.28 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.27 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.26 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.25 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.24 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.19 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.17 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.12 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 95.12 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.1 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.08 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 95.03 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 95.01 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 94.97 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.95 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 94.95 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 94.91 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.85 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 94.85 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 94.84 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 94.83 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 94.82 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 94.78 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.78 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 94.72 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 94.65 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 94.57 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 94.56 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 94.55 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 94.55 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 94.53 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 94.51 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 94.5 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 94.45 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 94.44 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 94.42 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 94.41 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 94.33 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 94.31 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 94.31 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.28 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 94.26 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.25 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 94.22 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 94.2 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 94.19 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 94.17 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 94.15 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 94.14 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 94.11 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 94.1 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.09 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 94.06 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 94.03 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.01 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 94.0 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 93.87 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 93.81 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 93.74 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 93.72 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 93.72 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 93.71 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 93.55 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 93.52 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 93.46 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 93.32 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 93.22 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 93.17 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 93.11 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 92.98 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 92.79 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 92.78 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.71 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 92.69 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 92.52 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 92.14 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 92.12 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 92.06 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 92.05 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 91.94 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 91.93 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 91.28 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 91.02 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 90.99 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 90.93 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 90.88 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 90.88 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 90.88 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 90.54 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 90.09 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 89.98 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 89.86 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 89.78 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.58 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 89.55 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 89.53 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 89.53 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 89.41 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 89.32 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 89.28 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 89.24 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 89.2 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 89.09 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 88.96 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 88.95 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 88.69 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 88.57 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 88.56 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 88.54 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 88.53 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 88.19 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 88.18 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 88.04 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 87.81 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 87.64 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 87.07 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 87.03 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 86.93 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 86.42 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 86.25 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 86.11 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 85.84 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 85.75 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 85.39 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 85.0 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 84.86 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 84.13 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 83.98 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 83.49 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 83.43 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 83.4 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 83.21 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 82.97 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 82.71 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 82.49 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 82.39 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 82.06 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 81.43 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 81.23 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 81.18 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 81.0 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-56 Score=417.01 Aligned_cols=332 Identities=23% Similarity=0.395 Sum_probs=295.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
++++++..|++++.||+.+++|++|++|||||.|.+.+ +|+|++|||+++|+ +++.+.|+|++|++.|++.+..
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEec
Confidence 45688999999999999999999999999999998753 58999999999999 9999999999999999998642
Q ss_pred cCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccC---CChhhhhhcCchHH
Q 017595 103 SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHG---MGVYEYAGNDSRFN 179 (369)
Q Consensus 103 ~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~---~~~~e~~~~~~~~~ 179 (369)
++ ..++|++|+.+..++.+..+.++++++.+. .+..+..|.+|.+.+++|.+++...+| ..+|+++.++++..
T Consensus 78 ~~---~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (353)
T 4a6d_A 78 RG---GKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGER 153 (353)
T ss_dssp ET---TEEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHH
T ss_pred cC---ccceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHH
Confidence 21 346899999999877776667888887765 345778999999999999999888877 46788899999999
Q ss_pred HHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC------CCCceE
Q 017595 180 GVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS------YRGVKH 253 (369)
Q Consensus 180 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~rv~~ 253 (369)
..|.++|...+......+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||++
T Consensus 154 ~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~ 232 (353)
T 4a6d_A 154 LQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF 232 (353)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence 99999999998888889999888 88889999999999999999999999999999999999887653 379999
Q ss_pred EeCCCCC-CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 254 IGGNMFE-RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 254 ~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
+.+||++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+. ....+|+.|+..+ +
T Consensus 233 ~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~---~~~~~dl~ml~~~-~ 308 (353)
T 4a6d_A 233 QEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPL---LTQLYSLNMLVQT-E 308 (353)
T ss_dssp EESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCH---HHHHHHHHHHHSS-S
T ss_pred ecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCH---HHHHHHHHHHHhC-C
Confidence 9999998 566679999999999999999999999999999999999999999877654332 3456788888765 9
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
|++||.+||+++|++|||+.+++.+.++..++|+++|
T Consensus 309 g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 309 GQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999999999999999999998
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=408.08 Aligned_cols=347 Identities=50% Similarity=0.912 Sum_probs=303.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCC-CCCCCcccHHHHHHHHhcCccccc
Q 017595 22 ENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPS-RNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~-~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.++++++..+++++.+++.+++|++|+++||||+|.+.| ++|+|++|||+++++ ++|.++..++|+||+|++.|+|++
T Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~ 93 (364)
T 3p9c_A 15 SADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence 457789999999999999999999999999999998842 248999999999995 222233499999999999999987
Q ss_pred cccC--CCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchH
Q 017595 101 SLSS--AGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRF 178 (369)
Q Consensus 101 ~~~~--~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~ 178 (369)
.... ++...++|++|+.++.++.+.++.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+.++++.
T Consensus 94 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~ 173 (364)
T 3p9c_A 94 LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRF 173 (364)
T ss_dssp EEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHH
T ss_pred eccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHH
Confidence 5210 00014789999999988887666789998887777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCC
Q 017595 179 NGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNM 258 (369)
Q Consensus 179 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~ 258 (369)
.+.|..+|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.+|+
T Consensus 174 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~ 253 (364)
T 3p9c_A 174 NRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDM 253 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCc
Confidence 99999999998888888899888767788999999999999999999999999999999999999999889999999999
Q ss_pred CCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCH
Q 017595 259 FERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTT 338 (369)
Q Consensus 259 ~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 338 (369)
++++|.+|+|++.++||+|+++++.++|++++++|||||+|+|.|.+.++.............+++.|+....+++.||.
T Consensus 254 ~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~ 333 (364)
T 3p9c_A 254 FKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYE 333 (364)
T ss_dssp TTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBH
T ss_pred CCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCH
Confidence 99888779999999999999999999999999999999999999999876544333333445678888754458999999
Q ss_pred HHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 339 QEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
++|+++|++|||+.+++.+..+..+|||+||
T Consensus 334 ~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 334 REFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 9999999999999999999999999999998
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-54 Score=406.53 Aligned_cols=348 Identities=49% Similarity=0.920 Sum_probs=304.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhc-CCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 22 ENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKA-GPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~-~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
..+++++..+++++.+++.+++|++|+++||||.|.+. ||++|+|++|||++++..+|.+++.+.|+||+|++.|+|.+
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 95 (368)
T 3reo_A 16 SSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY 95 (368)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEE
Confidence 46788999999999999999999999999999999885 54468999999999983223234599999999999999987
Q ss_pred cccC--CCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchH
Q 017595 101 SLSS--AGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRF 178 (369)
Q Consensus 101 ~~~~--~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~ 178 (369)
.... ++...++|++|+.++.++.+.++.++++++.+..++.++..|.+|.+++++|.++|+..+|.++|+|+.++++.
T Consensus 96 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~ 175 (368)
T 3reo_A 96 TLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRI 175 (368)
T ss_dssp EEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHH
T ss_pred ecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHH
Confidence 4210 00013789999999998887766789998887777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCC
Q 017595 179 NGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNM 258 (369)
Q Consensus 179 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~ 258 (369)
.+.|.++|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|+
T Consensus 176 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~ 255 (368)
T 3reo_A 176 NKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDM 255 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCT
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCC
Confidence 99999999998888888898888767788999999999999999999999999999999999999999889999999999
Q ss_pred CCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCH
Q 017595 259 FERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTT 338 (369)
Q Consensus 259 ~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 338 (369)
++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+....+++.||.
T Consensus 256 ~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~ 335 (368)
T 3reo_A 256 FDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTE 335 (368)
T ss_dssp TTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCH
T ss_pred CCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCH
Confidence 99888779999999999999999999999999999999999999999877644433334456778888765458999999
Q ss_pred HHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 339 QEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 339 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
++|+++|++|||+.+++.+..+..++||+||
T Consensus 336 ~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 336 KEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999997
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=378.49 Aligned_cols=339 Identities=22% Similarity=0.330 Sum_probs=290.7
Q ss_pred cccc-CCchhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHH
Q 017595 9 HKHK-HNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDR 87 (369)
Q Consensus 9 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~ 87 (369)
||.. .-+.+..+.++..++...+++++.+++.+++|++++++||||+|.+ ||+|++|||+++|+ +++.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~r 74 (348)
T 3lst_A 3 HMQRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRR 74 (348)
T ss_dssp -------------CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHH
T ss_pred ccceeecCCcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHH
Confidence 4444 3355566667888999999999999999999999999999999986 59999999999999 9999999
Q ss_pred HHHHHhcCccccccccCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCC
Q 017595 88 ILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMG 167 (369)
Q Consensus 88 ~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~ 167 (369)
||++|++.|+|++ ++++|++|+.++.+..+. +.++.+++.+...+.+++.|.+|++.+++|.++|+..+|.+
T Consensus 75 lLr~l~~~g~l~~-------~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~ 146 (348)
T 3lst_A 75 VLRLLAVRDVVRE-------SDGRFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSS 146 (348)
T ss_dssp HHHHHHHTTSEEE-------ETTEEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSC
T ss_pred HHHHHHhCCCEEe-------cCCEEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCC
Confidence 9999999999997 258999999999886544 35688888776666678999999999999999999889988
Q ss_pred hhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC
Q 017595 168 VYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS 247 (369)
Q Consensus 168 ~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 247 (369)
+|+|+.++++....|...|...+......+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++.....
T Consensus 147 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~ 225 (348)
T 3lst_A 147 LDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRL 225 (348)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCC
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccc
Confidence 99999999999999999999998888889999887 88889999999999999999999999999999999877763221
Q ss_pred -----CCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh
Q 017595 248 -----YRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT 322 (369)
Q Consensus 248 -----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 322 (369)
.+||+++.+|+++++|..|+|++.++||+|+++++.++|++++++|||||+|+|.|.+.++...+. ....+
T Consensus 226 ~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~----~~~~~ 301 (348)
T 3lst_A 226 DAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH----QSKEM 301 (348)
T ss_dssp CCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC----HHHHH
T ss_pred cccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc----hhhhc
Confidence 258999999999877855999999999999999999999999999999999999999877653321 23466
Q ss_pred hHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 323 DIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 323 d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
++.|+... +++.+|.++|.++|+++||+++++.+..+..++||++|
T Consensus 302 d~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 302 DFMMLAAR-TGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHTT-SCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred ChhhhhcC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 77777654 89999999999999999999999999888899999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=379.57 Aligned_cols=339 Identities=22% Similarity=0.385 Sum_probs=293.6
Q ss_pred ccccCCchhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHH
Q 017595 9 HKHKHNEEEEEEEENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRI 88 (369)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~ 88 (369)
||....+.+.............|++++.+++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rl 91 (369)
T 3gwz_A 20 HMTVEQTPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRL 91 (369)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHH
T ss_pred cceeccCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHH
Confidence 44455666667767888999999999999999999999999999999986 59999999999999 99999999
Q ss_pred HHHHhcCccccccccCCCCCCcc-eecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCC
Q 017595 89 LRLLVTNRVLRCSLSSAGDNQRL-YSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMG 167 (369)
Q Consensus 89 L~~L~~~g~l~~~~~~~~~~~~~-y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~ 167 (369)
|++|++.|++.++ ++++ |.+|+.++.+..+. +.++.+++.+...+.++..|.+|.+.+++|.++|...+|.+
T Consensus 92 Lr~L~~~g~l~~~------~~~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~ 164 (369)
T 3gwz_A 92 LRLLATVGVFDDL------GHDDLFAQNALSAVLLPDP-ASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTS 164 (369)
T ss_dssp HHHHHHTTSSEEC------SSTTEEECCHHHHTTSCCT-TCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSC
T ss_pred HHHHHhCCCEEEe------CCCceEecCHHHHHHhcCC-chhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCC
Confidence 9999999999975 4578 99999999875443 35688888776666677899999999999999999889988
Q ss_pred hhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC
Q 017595 168 VYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS 247 (369)
Q Consensus 168 ~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 247 (369)
+|+|+.++++..+.|...|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 165 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 243 (369)
T 3gwz_A 165 FWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARE 243 (369)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHH
Confidence 99999999999999999999988888888999887 88889999999999999999999999999999999888887664
Q ss_pred -------CCCceEEeCCCCCCCCC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhh
Q 017595 248 -------YRGVKHIGGNMFERIPK-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA 319 (369)
Q Consensus 248 -------~~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 319 (369)
.++|+++.+|+++++|. .|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++..... .
T Consensus 244 ~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-----~ 318 (369)
T 3gwz_A 244 LLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-----T 318 (369)
T ss_dssp HHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-----H
T ss_pred hhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-----h
Confidence 36899999999987775 4999999999999999999999999999999999999999987653321 3
Q ss_pred hhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE-ecCceeEEEEeC
Q 017595 320 SMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC-FVCNFCIIEFIK 369 (369)
Q Consensus 320 ~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 369 (369)
..+++.|+... +++.+|.++|.++|+++||+++++.+ ..+..+|||++|
T Consensus 319 ~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 319 LFVDLLLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred hHhhHHHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 46677777664 89999999999999999999999999 678899999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=366.77 Aligned_cols=341 Identities=29% Similarity=0.491 Sum_probs=290.9
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+..++...|++++.+++.+++|++++++||||.|...+ +|+|++|||+++|+ +|.+++.++|||++|++.|+|.+..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 34566788999999999999999999999999998742 48999999999999 4446889999999999999998741
Q ss_pred c---C-CCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcC--CChhhhccCCChhhhhhcCc
Q 017595 103 S---S-AGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQG--GIPFNKVHGMGVYEYAGNDS 176 (369)
Q Consensus 103 ~---~-~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~~~~~~e~~~~~~ 176 (369)
. + ++...++|++|+.++.++.+.+ .++++++.+..++.++..|.+|++.+++| .++|+..+|.++|+|+.+++
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 0 0 0000479999999997776544 57888888776677788999999999998 67888888888999999999
Q ss_pred hHHH--HHHHHHHhhhhHhHHHHHHhcc-CcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceE
Q 017595 177 RFNG--VFNKAMLNHTSIVMNRILDSYN-GFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKH 253 (369)
Q Consensus 177 ~~~~--~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~ 253 (369)
+..+ .|+..|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999998877666 7777772 266778999999999999999999999999999999999998888788999
Q ss_pred EeCCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh
Q 017595 254 IGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPE---NGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF 330 (369)
Q Consensus 254 ~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 330 (369)
+.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+........+++.|+...
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 999999887777999999999999999999999999999999 99999999987665432111234556777777654
Q ss_pred cCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 331 SGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 331 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
+++.++.++|.++|+++||+++++.+..+..+|||++|
T Consensus 321 -~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 -LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp -SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred -CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 89999999999999999999999999888899999987
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-48 Score=367.26 Aligned_cols=345 Identities=39% Similarity=0.732 Sum_probs=277.7
Q ss_pred hhHHHHHHH--HHHhhhhHHHHHHHHHHhChhHHHHhcC-CCCCCCHHHHHHhCCC--CCCCCcccHHHHHHHHhcCccc
Q 017595 24 EEDTYSFAM--QLAMSIVLPASMQAAAELGVFEIIAKAG-PGAKLSAAQIAAQMPS--RNPNTGVMLDRILRLLVTNRVL 98 (369)
Q Consensus 24 ~~~~~~~l~--~~~~~~~~~~~l~~a~~lglfd~L~~~~-~~~~~t~~~La~~~~~--~~~~~~~~l~~~L~~L~~~g~l 98 (369)
..++.+.++ +++.+++.+++|++++++||||.|.+.| |++++|++|||+++|+ ++|.+++.++|||++|++.|+|
T Consensus 19 ~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll 98 (372)
T 1fp1_D 19 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVL 98 (372)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCce
Confidence 345666777 9999999999999999999999999742 1122999999999998 2454788999999999999999
Q ss_pred cccccCCCCC--CcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcC-CChhhhccCCChhhhhhcC
Q 017595 99 RCSLSSAGDN--QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQG-GIPFNKVHGMGVYEYAGND 175 (369)
Q Consensus 99 ~~~~~~~~~~--~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~~~~~~e~~~~~ 175 (369)
.+....+..+ .+.|++|+.++.++.+.+..++++++.+..++.++..|.+|++.++++ .++|+..+|.++|+|+.++
T Consensus 99 ~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~ 178 (372)
T 1fp1_D 99 TSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKD 178 (372)
T ss_dssp EEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSC
T ss_pred EecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhC
Confidence 8741000001 369999999997776544257888888776777888999999999998 8889888888899999999
Q ss_pred chHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEe
Q 017595 176 SRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIG 255 (369)
Q Consensus 176 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~ 255 (369)
++....|...|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.
T Consensus 179 ~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~ 258 (372)
T 1fp1_D 179 KKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVG 258 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEe
Confidence 99999999999988887788888888657778999999999999999999999999999999999999998888999999
Q ss_pred CCCCCCCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc
Q 017595 256 GNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE 335 (369)
Q Consensus 256 ~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 335 (369)
+|+++++|..|+|++.++||||+++++.++|++++++|+|||+++|.|.+.++.............+++.|+.. .+++.
T Consensus 259 ~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~ 337 (372)
T 1fp1_D 259 GDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGRE 337 (372)
T ss_dssp CCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-HSCCC
T ss_pred CCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-cCCcc
Confidence 99998777789999999999999999999999999999999999999998766543222222345667777654 37899
Q ss_pred CCHHHHHHHHHHcCCcceeEEEecCc-eeEEEEeC
Q 017595 336 RTTQEFMALANEAGFNGVNYECFVCN-FCIIEFIK 369 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 369 (369)
++.++|.++|+++||+++++.+...+ .+|||++|
T Consensus 338 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 338 RTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 99999999999999999999985433 69999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-49 Score=366.49 Aligned_cols=316 Identities=24% Similarity=0.384 Sum_probs=277.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCC
Q 017595 29 SFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDN 108 (369)
Q Consensus 29 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 108 (369)
..+++++.+++.+++|++|+++||||+|.+ ||+|++|||+++|+ +++.++|||++|++.|++.++ +
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~------~ 72 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD------G 72 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------T
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec------C
Confidence 357889999999999999999999999986 59999999999999 999999999999999999975 4
Q ss_pred CcceecChhchhhhcCCCCCChHHHHHHhcChhHH-HHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHH
Q 017595 109 QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAIL-DIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAML 187 (369)
Q Consensus 109 ~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~ 187 (369)
+++|.+|+.++.+..+. ..++.+++.+...+..+ ..|.+|.+.+++|.++|+..+|.++|+|+.++++....|...|.
T Consensus 73 ~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 73 QGVYGLTEFGEQLRDDH-AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp TSBEEECTTGGGGSTTC-TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CCeEEcCHhHHHHhcCC-chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHH
Confidence 68999999999886543 35678887665444455 78999999999999999888898899999999999999999999
Q ss_pred hhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC
Q 017595 188 NHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE 260 (369)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~ 260 (369)
..+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|+++
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 230 (332)
T 3i53_A 152 HHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230 (332)
T ss_dssp HHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred HhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCC
Confidence 888777777778777 77889999999999999999999999999999999888887764 2789999999998
Q ss_pred CCCC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 261 RIPK-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 261 ~~p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++|. .|+|+++++||+|+++++.++|++++++|+|||+|+|.|.+.++. .+ ...+++.|+... +++.+|.+
T Consensus 231 ~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~ 302 (332)
T 3i53_A 231 PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLA 302 (332)
T ss_dssp CCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHH
T ss_pred CCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHH
Confidence 7774 599999999999999999999999999999999999999987764 11 235677776654 89999999
Q ss_pred HHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 340 EFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
+|.++|+++||+++++.+..+ .+|||++|
T Consensus 303 e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 303 ELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999999999988 99999975
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=363.30 Aligned_cols=336 Identities=26% Similarity=0.475 Sum_probs=288.9
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+..++...+++++.+++.+++|++++++|||+.|...+ +|.|++|||+++|+ +|.+++.++|||++|++.|+|.+..
T Consensus 12 ~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~ 88 (352)
T 1fp2_A 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT 88 (352)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec
Confidence 34577788999999999999999999999999998742 48999999999999 3434789999999999999998741
Q ss_pred cCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHh-cCCChhhhccCCChhhhhhcCchHHHH
Q 017595 103 SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVL-QGGIPFNKVHGMGVYEYAGNDSRFNGV 181 (369)
Q Consensus 103 ~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~~~~~e~~~~~~~~~~~ 181 (369)
+ +++.|++|+.++.++.+.+ .++++++.+..++.++..|.+|++.++ +|.++|+..+|.++|+|+.++++..+.
T Consensus 89 -~---~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (352)
T 1fp2_A 89 -K---EEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTS 163 (352)
T ss_dssp -S---SSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHH
T ss_pred -C---CCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHH
Confidence 0 2479999999997775544 578888887767777889999999999 888899888898999999999999999
Q ss_pred HHHHHHhhhhHhHHHHHHhcc-CcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCC
Q 017595 182 FNKAMLNHTSIVMNRILDSYN-GFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE 260 (369)
Q Consensus 182 ~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~ 260 (369)
|...|.......... ++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+|+++
T Consensus 164 f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 242 (352)
T 1fp2_A 164 FNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFT 242 (352)
T ss_dssp HHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTT
T ss_pred HHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccC
Confidence 999999888766666 66662 2667789999999999999999999999999999999999999887889999999998
Q ss_pred CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCC
Q 017595 261 RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPE---NGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERT 337 (369)
Q Consensus 261 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 337 (369)
++|..|+|++.++||||+++++.++|++++++||| ||+++|.|...++....+........+++.|+. . +++.++
T Consensus 243 ~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t 320 (352)
T 1fp2_A 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERN 320 (352)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEE
T ss_pred CCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCC
Confidence 87778999999999999999999999999999999 999999999876643321112234456776665 4 588999
Q ss_pred HHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
.++|.++|+++||+.+++.+..+..+|||++|
T Consensus 321 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 321 EEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 99999999999999999999888899999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=356.08 Aligned_cols=319 Identities=24% Similarity=0.373 Sum_probs=280.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC
Q 017595 26 DTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA 105 (369)
Q Consensus 26 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 105 (369)
.....+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|+|++|++.|++.+.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence 455789999999999999999999999999976 48999999999999 999999999999999999875
Q ss_pred CCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHH
Q 017595 106 GDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKA 185 (369)
Q Consensus 106 ~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 185 (369)
+++.|++|+.++.+. +. +.++++++.+...+.+ ..|.+|++.++++.++|+..+|.++|+|+.++++....|...
T Consensus 75 --~~~~y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 149 (334)
T 2ip2_A 75 --TRDGYANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLA 149 (334)
T ss_dssp --TTTEEEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred --CCCeEecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHH
Confidence 458999999999777 43 3568888877765544 889999999999999998888889999999999999999999
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEEeCCC
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHIGGNM 258 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~ 258 (369)
| ..+......+++.++ +++ .+|||||||+|.++..+++++|+.+++++|+|.+++.+++. ++++++.+|+
T Consensus 150 m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 226 (334)
T 2ip2_A 150 M-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226 (334)
T ss_dssp H-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCT
T ss_pred H-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCC
Confidence 9 888777888888887 777 99999999999999999999999999999998777766542 6899999999
Q ss_pred CCCCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCC
Q 017595 259 FERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERT 337 (369)
Q Consensus 259 ~~~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 337 (369)
++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++...+ .....+++.|+... +++.++
T Consensus 227 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t 301 (334)
T 2ip2_A 227 LQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRT 301 (334)
T ss_dssp TTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCB
T ss_pred CCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCC
Confidence 9877764 99999999999999999999999999999999999999987654322 23345677776654 789999
Q ss_pred HHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
.++|.++++++||+++++.+.++..++|+++|
T Consensus 302 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 302 TEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999999988899999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=345.22 Aligned_cols=325 Identities=16% Similarity=0.220 Sum_probs=261.4
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+..++...+++++.|++.+++|++++++||||.|...+ +|+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 11 ~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~- 83 (363)
T 3dp7_A 11 TAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE- 83 (363)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE-
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec-
Confidence 45578889999999999999999999999999998732 59999999999999 999999999999999999863
Q ss_pred cCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccC--CChhhhhhcCchHHH
Q 017595 103 SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHG--MGVYEYAGNDSRFNG 180 (369)
Q Consensus 103 ~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~--~~~~e~~~~~~~~~~ 180 (369)
+++|++|+.++.++.+.+ ...++.+ ..+.+++.|.+|++++++|.+++...+| .++|+++.++++..+
T Consensus 84 ------~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (363)
T 3dp7_A 84 ------EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQ 153 (363)
T ss_dssp ------TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHH
T ss_pred ------CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHH
Confidence 589999999987776532 2222222 2355688999999999999888887787 689999999988665
Q ss_pred ----HHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------C
Q 017595 181 ----VFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------R 249 (369)
Q Consensus 181 ----~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~ 249 (369)
.|...|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +
T Consensus 154 ~~~~~f~~~~~~~~---~~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 154 KSWFGFDHFYSDQS---FGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHHTTCCC---CHHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHHhhhhh---HHHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 3555554432 223444433 346789999999999999999999999999999998888776542 5
Q ss_pred CceEEeCCCCCC---CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchH-HHhhhhhhhH
Q 017595 250 GVKHIGGNMFER---IPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATA-AAREASMTDI 324 (369)
Q Consensus 250 rv~~~~~d~~~~---~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d~ 324 (369)
||+++.+|++++ +|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++...... ........++
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~ 309 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF 309 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH
Confidence 899999999984 6744 9999999999999999999999999999999999999998876543211 1111122333
Q ss_pred HHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEEeC
Q 017595 325 IMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEFIK 369 (369)
Q Consensus 325 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 369 (369)
.++. ..+++.+|.++|.++|++|||+++++.+.. .+.++|+++|
T Consensus 310 ~~~~-~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 310 TAMA-NGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHSS-CSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred Hhhh-CCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 3333 236789999999999999999999998765 5599999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=344.30 Aligned_cols=324 Identities=23% Similarity=0.376 Sum_probs=275.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccC
Q 017595 25 EDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSS 104 (369)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 104 (369)
+.....+++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|+|++|++.|++.+.
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~--- 82 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG--- 82 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC---
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe---
Confidence 4456789999999999999999999999999965 58999999999999 999999999999999999874
Q ss_pred CCCCCc--ceecChhchhhhcCCCCCChHHHHHHhcChhHH-HHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHH
Q 017595 105 AGDNQR--LYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAIL-DIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGV 181 (369)
Q Consensus 105 ~~~~~~--~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~ 181 (369)
+++ .|++|+.++.+..+.+ .+++.++.+...+..+ ..|..|.+.+++|.++|...+|.++|+++..+++....
T Consensus 83 ---~~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (374)
T 1qzz_A 83 ---EKQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS 158 (374)
T ss_dssp ---CC-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred ---CCCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence 345 9999999987776543 5788887765444455 78899999999999999888888999999999999999
Q ss_pred HHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEE
Q 017595 182 FNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHI 254 (369)
Q Consensus 182 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~ 254 (369)
|...|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++|+++
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 237 (374)
T 1qzz_A 159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 237 (374)
T ss_dssp HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence 999998877777788888887 777899999999999999999999999999999998787766542 489999
Q ss_pred eCCCCCCCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec--cCCCCCcchHHHhhhhhhhHHHHHhhc
Q 017595 255 GGNMFERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR--MPMVTPEATAAAREASMTDIIMLMQFS 331 (369)
Q Consensus 255 ~~d~~~~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~--~~~~~~~~~~~~~~~~~~d~~~~~~~~ 331 (369)
.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|. +.++... ......+++.|+...
T Consensus 238 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~- 312 (374)
T 1qzz_A 238 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTFM- 312 (374)
T ss_dssp ECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-
T ss_pred eCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHhC-
Confidence 99999877764 999999999999999889999999999999999999998 7654321 123345666666554
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEecCce-----eEEEEeC
Q 017595 332 GGRERTTQEFMALANEAGFNGVNYECFVCNF-----CIIEFIK 369 (369)
Q Consensus 332 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 369 (369)
+++.++.++|.++|+++||+++++....+.. ++|+++|
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7899999999999999999999999988877 9999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=337.54 Aligned_cols=324 Identities=21% Similarity=0.353 Sum_probs=277.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccC
Q 017595 25 EDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSS 104 (369)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 104 (369)
+...+.+++++.+++.+++|.+++++|||+.|.. +|.|++|||+++|+ +++.++|+|++|++.|+|.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~--- 85 (360)
T 1tw3_A 17 QIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED--- 85 (360)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---
Confidence 3557888999999999999999999999999965 58999999999999 999999999999999999874
Q ss_pred CCCCCcceecChhchhhhcCCCCCChHHHHHHhcChh-HHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHH
Q 017595 105 AGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQA-ILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFN 183 (369)
Q Consensus 105 ~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~ 183 (369)
++++|++|+.+..+..+.+ .+++.++.+...+. .+..|.+|.+.+++|.++++..+|..+|+++..+++....|.
T Consensus 86 ---~~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~ 161 (360)
T 1tw3_A 86 ---APGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFD 161 (360)
T ss_dssp ---ETTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHH
T ss_pred ---CCCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHH
Confidence 3579999999887776543 57777776554333 457889999999999988888888899999998999999999
Q ss_pred HHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEEeC
Q 017595 184 KAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHIGG 256 (369)
Q Consensus 184 ~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~ 256 (369)
..|..........+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++++++.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 240 (360)
T 1tw3_A 162 SLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240 (360)
T ss_dssp HHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 9998887777788888887 777899999999999999999999999999999987777765531 48999999
Q ss_pred CCCCCCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc-CCCCCcchHHHhhhhhhhHHHHHhhcCCc
Q 017595 257 NMFERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM-PMVTPEATAAAREASMTDIIMLMQFSGGR 334 (369)
Q Consensus 257 d~~~~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 334 (369)
|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.. .++.... .....+++.|+... +++
T Consensus 241 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~ 315 (360)
T 1tw3_A 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGA 315 (360)
T ss_dssp CTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCC
T ss_pred CCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCc
Confidence 999877765 9999999999999999999999999999999999999988 6543221 12345566666554 789
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEecCc-----eeEEEEeC
Q 017595 335 ERTTQEFMALANEAGFNGVNYECFVCN-----FCIIEFIK 369 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 369 (369)
.++.++|.++|+++||+++++.+..+. .++|+++|
T Consensus 316 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 316 LRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 999999999999999999999988776 89999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=328.94 Aligned_cols=315 Identities=20% Similarity=0.246 Sum_probs=269.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCC
Q 017595 29 SFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDN 108 (369)
Q Consensus 29 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 108 (369)
+.+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-------
Confidence 578999999999999999999999999986 48999999999999 999999999999999999863
Q ss_pred CcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHHh
Q 017595 109 QRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLN 188 (369)
Q Consensus 109 ~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~ 188 (369)
+++|++|+.+..++...++.++++++.+...+.++..|.+|.+.++++.++|+ . |+++.++++....|...|..
T Consensus 73 ~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 146 (335)
T 2r3s_A 73 AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSP 146 (335)
T ss_dssp TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGG
T ss_pred CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHH
Confidence 58999999995444443345678887776555678889999999999877654 2 77888888889999999988
Q ss_pred hhhHhHHHHHHhccCc--CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEEeCCCC
Q 017595 189 HTSIVMNRILDSYNGF--EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHIGGNMF 259 (369)
Q Consensus 189 ~~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~ 259 (369)
........+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|++
T Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 147 MMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp GGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 88877788888887 6 77789999999999999999999999999999998777766542 47999999999
Q ss_pred C-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCC
Q 017595 260 E-RIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERT 337 (369)
Q Consensus 260 ~-~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 337 (369)
+ +++.. |+|++.+++|+++++++.++|++++++|+|||+++|.|...++..... .....+++.|+....+++.++
T Consensus 226 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t 302 (335)
T 2r3s_A 226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYT 302 (335)
T ss_dssp TSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCC
T ss_pred cCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCC
Confidence 8 67765 999999999999999999999999999999999999999877643222 223456666666544789999
Q ss_pred HHHHHHHHHHcCCcceeEEEecCceeEEEEe
Q 017595 338 TQEFMALANEAGFNGVNYECFVCNFCIIEFI 368 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 368 (369)
.++|.++++++||+.+++.+..+..++++++
T Consensus 303 ~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 303 FAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999999999988888877764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=328.71 Aligned_cols=311 Identities=18% Similarity=0.297 Sum_probs=261.6
Q ss_pred hHHHHHHHHHHh-hhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccccc
Q 017595 25 EDTYSFAMQLAM-SIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLS 103 (369)
Q Consensus 25 ~~~~~~l~~~~~-~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 103 (369)
.+....+++++. +++.+++|++++++||||.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee--
Confidence 455667788886 8999999999999999999986 48999999999999 999999999999999999974
Q ss_pred CCCCCCcceecChhchhhhcCCCC---CChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCch---
Q 017595 104 SAGDNQRLYSLAPVAKYFVLNQDG---VSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSR--- 177 (369)
Q Consensus 104 ~~~~~~~~y~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~--- 177 (369)
++.|++|+.+..++.+..+ .++++++.+. ...+++.|.+|++.++++.+ |+|+.++++
T Consensus 98 -----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~ 161 (359)
T 1x19_A 98 -----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTR 161 (359)
T ss_dssp -----TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSH
T ss_pred -----CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhH
Confidence 4699999986655555444 5788877665 35677889999999998754 566777888
Q ss_pred HHHHHHHHHHhhhh-HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CC
Q 017595 178 FNGVFNKAMLNHTS-IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YR 249 (369)
Q Consensus 178 ~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ 249 (369)
....|...|..... .....+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+
T Consensus 162 ~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 240 (359)
T 1x19_A 162 EDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVAD 240 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCC
Confidence 88999999999888 77888998887 78889999999999999999999999999999999888776653 25
Q ss_pred CceEEeCCCCC-CCCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH
Q 017595 250 GVKHIGGNMFE-RIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM 328 (369)
Q Consensus 250 rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 328 (369)
|++++.+|+++ +++.+|+|++.+++|+|+++++.++|++++++|+|||+++|.|...++...+. ....+ .|+.
T Consensus 241 ~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~--~~~~ 314 (359)
T 1x19_A 241 RMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN----FDYLS--HYIL 314 (359)
T ss_dssp TEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCC----HHHHH--HHGG
T ss_pred CEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCch----HHHHH--HHHH
Confidence 79999999998 66666999999999999998899999999999999999999999876542111 11112 3333
Q ss_pred hhcCCcc----CCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 329 QFSGGRE----RTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 329 ~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
...+++. ++.++|.++|+++||+++++.+.. ..++++++|
T Consensus 315 ~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 315 GAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred hcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 3335777 999999999999999999999888 889999987
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=328.89 Aligned_cols=316 Identities=15% Similarity=0.218 Sum_probs=261.6
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
...+....+++++.+++.+++|++++++||||+|.. |+|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 20 ~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~- 89 (352)
T 3mcz_A 20 AALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE- 89 (352)
T ss_dssp CCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec-
Confidence 334556669999999999999999999999999964 8999999999999 999999999999999999974
Q ss_pred cCCCCCCcceecChhchhhhcCCCCCChHHHHHHhcChhHHHHhhhhHHHHhcCCCh-hhhccCCChhhhhhcCchHHHH
Q 017595 103 SSAGDNQRLYSLAPVAKYFVLNQDGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIP-FNKVHGMGVYEYAGNDSRFNGV 181 (369)
Q Consensus 103 ~~~~~~~~~y~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~~~~~~e~~~~~~~~~~~ 181 (369)
++.|.+|+.+..++.+..+.+++.++.+. ...+..|.+|++.+++|.+. |+. ..++..+++....
T Consensus 90 ------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~~~ 155 (352)
T 3mcz_A 90 ------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRARDA 155 (352)
T ss_dssp ------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHHHH
T ss_pred ------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHHHH
Confidence 47899999999777666666787776543 34567889999999988654 222 1234678888899
Q ss_pred HHHHHHhhhhHhHHHHHHhccCcCC-cceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceE
Q 017595 182 FNKAMLNHTSIVMNRILDSYNGFEQ-IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKH 253 (369)
Q Consensus 182 ~~~~m~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~ 253 (369)
|..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|+++
T Consensus 156 f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 233 (352)
T 3mcz_A 156 FNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEF 233 (352)
T ss_dssp HHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEE
T ss_pred HHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEE
Confidence 99999874433 457888887 666 89999999999999999999999999999999877766553 257999
Q ss_pred EeCCCCC-C--CCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh
Q 017595 254 IGGNMFE-R--IPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ 329 (369)
Q Consensus 254 ~~~d~~~-~--~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 329 (369)
+.+|+++ + .+.. |+|++.++||+|+++++.++|++++++|+|||+++|.|.+.++..... .....+++.|+..
T Consensus 234 ~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~ 310 (352)
T 3mcz_A 234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVN 310 (352)
T ss_dssp EECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHH
T ss_pred EeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhh
Confidence 9999998 4 5654 999999999999999999999999999999999999999887754322 2345667777765
Q ss_pred hcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 330 FSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 330 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
..+++.++.++|.++|+++||++++.. .+..++++++|
T Consensus 311 ~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 311 TNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp STTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 557899999999999999999999843 46688888876
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=174.75 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=123.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhC--CCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCCCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRY--PHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKGDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~v 273 (369)
++..+|||||||+|.++..+++++ |+++++++|+ +.+++.|++ ..+|+++.+|+.+ +++..|+|++..+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence 567899999999999999999985 6789999999 888887654 2589999999988 6766799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHH-------------HhhcCCccCCHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIML-------------MQFSGGRERTTQE 340 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-------------~~~~~~~~~t~~e 340 (369)
||++++++...+|++++++|||||+|++.|.....+...... ......++... ....--...|.++
T Consensus 149 l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~ 227 (261)
T 4gek_A 149 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 227 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHH
T ss_pred eeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHH
Confidence 999999888899999999999999999999987664321100 00001111000 0000113468999
Q ss_pred HHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 341 FMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 341 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
+.++|++|||+.++++.-...++.+.++|
T Consensus 228 ~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 228 HKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 99999999999999876554455555665
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=160.49 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=130.2
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC-CE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG-DA 267 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-D~ 267 (369)
..+++.++...+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44555454334668999999999999999999999999999999 877776543 3589999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH--------H----HhhcCCcc
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM--------L----MQFSGGRE 335 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--------~----~~~~~~~~ 335 (369)
|++..++||+++++...+|++++++|+|||++++.+...+........ ....+..... . ........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998888889999999999999999999887654211100 0000100000 0 00012345
Q ss_pred CCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 336 RTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
++.++|.++|++|||+.+++......++++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 6899999999999999999998888888776654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=156.51 Aligned_cols=169 Identities=15% Similarity=0.215 Sum_probs=121.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 264 (369)
...+++.++ .+.. +|||||||+|.++..+++. ++.+++++|. +.+++.+++. ++++++.+|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 345555555 4443 9999999999999999998 8889999999 8877766542 589999999988 6664
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhh-hhHHHHHhhcCCccCCHHHH
Q 017595 265 G--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM-TDIIMLMQFSGGRERTTQEF 341 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~t~~e~ 341 (369)
. |+|++..++||++ +...+|++++++|+|||++++.+...+.............. ..+..... .....++.++|
T Consensus 110 ~~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHH
T ss_pred ccccEEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHH
Confidence 3 9999999999994 45689999999999999999988654331100000000000 00111100 12344578999
Q ss_pred HHHHHHcCCcceeEEEecCceeEEEEe
Q 017595 342 MALANEAGFNGVNYECFVCNFCIIEFI 368 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~~~~~~~vi~~~ 368 (369)
.++|+++||+.+++.......+++...
T Consensus 187 ~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 187 QNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999888877765543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=149.29 Aligned_cols=169 Identities=13% Similarity=0.144 Sum_probs=119.8
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCC-CCCCC-CEEEe
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFE-RIPKG-DAILM 270 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~-D~v~~ 270 (369)
.+++.+. .....+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444443 345689999999999999999987 568999999 7777766543 489999999988 55543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhh--hhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA--SMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
..++||+++++...+|++++++|||||++++.++..+............ ..+...... ......++.++|.++|+++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAND-LQTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHH-HHHSCCCBHHHHHHHHHHT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhh-cchhhcCCHHHHHHHHHHC
Confidence 9999999988877899999999999999999987654321100000000 000000000 0012345899999999999
Q ss_pred CCcceeEEEecCceeEEEEeC
Q 017595 349 GFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 349 Gf~~~~~~~~~~~~~vi~~~~ 369 (369)
||+++.+ ...+..+++.+.|
T Consensus 192 Gf~v~~~-~~~~~~w~~~~~~ 211 (220)
T 3hnr_A 192 GFHVTFT-RLNHFVWVMEATK 211 (220)
T ss_dssp TEEEEEE-ECSSSEEEEEEEE
T ss_pred CCEEEEe-eccceEEEEeehh
Confidence 9986654 4457778877653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=147.77 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=125.1
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~ 265 (369)
..+++.++ .....+|||||||+|.++..+++.+ |+.+++++|. +.+++.+++. ++++++.+|+.+ +++..
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45555555 6677899999999999999999996 8889999999 8887766542 589999999987 66543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 --DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++..++||+++ ...+|++++++|+|||++++.+.......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 99999999999954 57899999999999999999988765432110 0122358999999
Q ss_pred HHHHcCCcceeEEEecCceeEEEEeC
Q 017595 344 LANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
+++++||+++++.........+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988887777777665
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-18 Score=150.88 Aligned_cols=156 Identities=16% Similarity=0.285 Sum_probs=122.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----CCceEEeCCCCC-CCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFE-RIPKG-- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~-- 265 (369)
...+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345666665 6677899999999999999999987 679999999 7777765543 689999999988 66543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..++||+++++...+|++++++|+|||++++.+...+...... . .... ... ..+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~---~~~~-~~~--~~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD--D---EFKE-YVK--QRKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC--H---HHHH-HHH--HHTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch--H---HHHH-HHh--cCCCCCCCHHHHHHHH
Confidence 999999999999888899999999999999999999998665411110 0 0111 111 1245577999999999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=148.66 Aligned_cols=170 Identities=12% Similarity=0.059 Sum_probs=119.2
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCC-
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPK- 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~- 264 (369)
..+.+.+.++ ...+|||||||+|.++..+++.++ +++++|. +.+++.+++. .+++++.+|+.+ +++.
T Consensus 28 ~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (227)
T 1ve3_A 28 LEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 102 (227)
T ss_dssp HHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTT
T ss_pred HHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCC
Confidence 3444555443 468999999999999999999887 8888898 7777766542 689999999988 6554
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC-----------
Q 017595 265 G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG----------- 332 (369)
Q Consensus 265 ~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------- 332 (369)
. |+|++..++|++..++..++|++++++|+|||++++.+...+..... ............+....+.
T Consensus 103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR-LKESLVVGQKYWISKVIPDQEERTVVIEFK 181 (227)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGG-CCC---------CCEEEEETTTTEEEEEC-
T ss_pred cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHH-HHhhhhcccceeecccccCccccEEEEEec
Confidence 3 99999999877777788899999999999999999987742211000 0000000000000000000
Q ss_pred ---------CccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 333 ---------GRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 333 ---------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
...++ .+|.++|+++||+.+++........+|+++|
T Consensus 182 ~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 182 SEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp ----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred cchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 01112 4899999999999999999888888999886
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=145.03 Aligned_cols=150 Identities=19% Similarity=0.358 Sum_probs=114.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC---CCCCC--CEE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE---RIPKG--DAI 268 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~v 268 (369)
..+...++.+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. +.++.+|+.+ +++.+ |+|
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEE
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEE
Confidence 344444443456789999999999999999988 457899999 8888877754 8999999876 55543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
++..++||+++++...+|++++++|||||++++..+.... ... ... ...........+.++|.++++++
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~~----~~~--~~~~~~~~~~~~~~~l~~~l~~a 174 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----LYS----LIN--FYIDPTHKKPVHPETLKFILEYL 174 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HHH----HHH--HTTSTTCCSCCCHHHHHHHHHHH
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hHH----HHH--HhcCccccccCCHHHHHHHHHHC
Confidence 9999999999888899999999999999999998765321 110 111 01111234567899999999999
Q ss_pred CCcceeEEEec
Q 017595 349 GFNGVNYECFV 359 (369)
Q Consensus 349 Gf~~~~~~~~~ 359 (369)
||+++++....
T Consensus 175 Gf~~~~~~~~~ 185 (240)
T 3dli_A 175 GFRDVKIEFFE 185 (240)
T ss_dssp TCEEEEEEEEC
T ss_pred CCeEEEEEEec
Confidence 99999887654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=145.20 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=112.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCCCCCC-C-CEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFERIPK-G-DAI 268 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~~~p~-~-D~v 268 (369)
...+++.+.......+|||||||+|.++..+++. ..+++++|. +.+++.+++. ++++++.+|+.+..+. . |+|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 3445555543456679999999999999999998 568999998 8887776643 6899999999885443 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC-------CccCCHHHH
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG-------GRERTTQEF 341 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-------~~~~t~~e~ 341 (369)
++..++||+++++...+|++++++|+|||++++.+...+.......... ........ .... ....+.++|
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 188 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRR-TLQDGRSFRIVKVFRSPAEL 188 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEE-ECTTSCEEEEECCCCCHHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceee-ecCCcchhhHhhcCCCHHHH
Confidence 9999999999887889999999999999999999987643211000000 00000000 0001 123589999
Q ss_pred HHHHHHcCCcceeEEE
Q 017595 342 MALANEAGFNGVNYEC 357 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~ 357 (369)
.++++++||++.....
T Consensus 189 ~~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 189 TERLTALGWSCSVDEV 204 (218)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCEEEeeec
Confidence 9999999999544433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=149.87 Aligned_cols=163 Identities=17% Similarity=0.239 Sum_probs=121.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~- 264 (369)
...+++.++ .....+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|.
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 345666665 66778999999999999999997764 49999999 7777766432 589999999965 334
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcc-----hHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA-----TAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
.|+|++..++||+++++...+|++++++|||||++++.+...+..... +.........++.....++++..++.+
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 499999999999987778899999999999999999999876442110 000000111122222224567788999
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
+|.++++++||+++++....
T Consensus 210 ~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHhCCcEEEEEEeCc
Confidence 99999999999999987653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=149.25 Aligned_cols=155 Identities=16% Similarity=0.330 Sum_probs=116.4
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~ 264 (369)
.+..+++.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .+++.++.+|+.+ +++.
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3456666665 56778999999999999999999875 8999998 888776653 2679999999988 7664
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH-HHhhcCCccCCHHHH
Q 017595 265 G--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM-LMQFSGGRERTTQEF 341 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~ 341 (369)
+ |+|++..++||+++ ...+|++++++|||||++++.+...+..+ ... ....... .........++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND---AFD---VFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH---HHH---HHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCH---HHH---HHHHHHHHhcCccccCCCCHHHH
Confidence 3 99999999999965 46899999999999999999988765431 111 1111111 111113456789999
Q ss_pred HHHHHHcCCcceeEEEe
Q 017595 342 MALANEAGFNGVNYECF 358 (369)
Q Consensus 342 ~~ll~~aGf~~~~~~~~ 358 (369)
.++|+++||+++++...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998877654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=146.90 Aligned_cols=164 Identities=20% Similarity=0.268 Sum_probs=124.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 265 (369)
+..+++.++ .....+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+- +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 446666665 66778999999999999999999977 89999999 8887766542 4899999999764 443
Q ss_pred -CEEEeccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHH-----hhhhhhhHHHHHhhcC
Q 017595 266 -DAILMKWILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAA-----REASMTDIIMLMQFSG 332 (369)
Q Consensus 266 -D~v~~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~ 332 (369)
|+|++..++||+++ +....+|++++++|||||++++.+...+......... ......++.....+++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999954 5677999999999999999999998765431100000 0000112233323457
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEecC
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFVC 360 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 360 (369)
+..++.+++.++++++||+++++.....
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 7889999999999999999999876653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=146.59 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=120.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 264 (369)
...+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .+++.++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 456666666 6677899999999999999999887 689999999 777776543 2579999999988 6664
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH
Q 017595 265 G--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM 342 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 342 (369)
+ |+|++..++||+++. ..+|++++++|||||++++.+............ ...+.... .++....++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAKK----EAVDAFRA-GGGVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHH----HHHHHHHH-HHTCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHH----HHHHHHHh-hcCccCCCCHHHHH
Confidence 3 999999999999654 689999999999999999999875432211110 11111111 12356778999999
Q ss_pred HHHHHcCCcceeEEEec
Q 017595 343 ALANEAGFNGVNYECFV 359 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~~ 359 (369)
++++++||+++++....
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999999887654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=147.19 Aligned_cols=163 Identities=18% Similarity=0.313 Sum_probs=122.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~- 264 (369)
...+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ++.
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 446666665 6677899999999999999999886 569999999 8877766532 579999999866 233
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcch----H-HHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT----A-AAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~----~-~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
.|+|++..++||+++++...+|++++++|+|||++++.++..+...... . ........++.....++++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 4999999999999888889999999999999999999998765421100 0 0000011122222223467788999
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
+|.++++++||+++++....
T Consensus 236 ~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHHhCCCEEEEEEecc
Confidence 99999999999999877653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=148.40 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=116.4
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----CCceEEeCCCCC-CCCCC--C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFE-RIPKG--D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~--D 266 (369)
..+++.++ .....+|||||||+|.++..+++.. ..+++++|. +.+++.+++. +++.++.+|+.+ +++.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45566565 5567899999999999999999886 457899998 7777765532 679999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+|++.+++||+++++...+|++++++|+|||++++.+........ ..+ .......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec-----ccCCcccCCHHHHHHHHH
Confidence 999999999999888899999999999999999999975543211 000 011234578999999999
Q ss_pred HcCCcceeEEEec
Q 017595 347 EAGFNGVNYECFV 359 (369)
Q Consensus 347 ~aGf~~~~~~~~~ 359 (369)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=146.50 Aligned_cols=155 Identities=14% Similarity=0.201 Sum_probs=117.5
Q ss_pred HHHHHHhc---cCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-C
Q 017595 194 MNRILDSY---NGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-R 261 (369)
Q Consensus 194 ~~~~~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~ 261 (369)
...+++.+ +.+....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 34555555 125677899999999999999999986 468999999 7777766542 579999999988 6
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 262 IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 262 ~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++.+ |+|++..++||+++ ...+|++++++|||||++++.++.......... ...+..... .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSS------IQPILDRIK--LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG------GHHHHHHHT--CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHH------HHHHHHHhc--CCCCCCHH
Confidence 6643 99999999999976 679999999999999999999987654322110 111111111 23356899
Q ss_pred HHHHHHHHcCCcceeEEEec
Q 017595 340 EFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~~~ 359 (369)
+|.++++++||+++++....
T Consensus 216 ~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHCCCeEEEEEECc
Confidence 99999999999999887643
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=150.03 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=115.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCCC-CEEEecc-ccccCCh-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPKG-DAILMKW-ILHNWDD- 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~-D~v~~~~-vlh~~~d- 279 (369)
+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .+++.++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHH
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCH
Confidence 568999999999999999998864 7888998 888877664 3689999999988 55444 9999998 9999965
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHH--------------------hhhhhhhHHHHHhhcC-------
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAA--------------------REASMTDIIMLMQFSG------- 332 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~~~~------- 332 (369)
++...+|++++++|+|||++++.+...+..-...... ......++.+.....+
T Consensus 128 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (263)
T 3pfg_A 128 AELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHE 207 (263)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEE
Confidence 5677999999999999999998755443321000000 0000000000000001
Q ss_pred ----CccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 333 ----GRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 333 ----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
.+.+|.++|.++|+++||+++++....+...+.+++|
T Consensus 208 ~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 208 ESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999877767666776664
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-17 Score=142.32 Aligned_cols=153 Identities=16% Similarity=0.301 Sum_probs=115.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~- 265 (369)
..+++.+. .....+|||||||+|.++..+++.++ +++++|. +.+++.+++. +++.++.+|+.+ +++.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 34555555 66788999999999999999999875 7889998 7777766532 679999999987 66543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhH-HHHHhhcCCccCCHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDI-IMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++.+++||+++ ...+|++++++|+|||++++.+...+... ... ..... ...........++.++|.+
T Consensus 88 fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 88 FDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDP---VLD---EFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSH---HHH---HHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCCh---hHH---HHHHHHHHhccccccCCCCHHHHHH
Confidence 99999999999965 56899999999999999999998765431 111 11111 1111111345679999999
Q ss_pred HHHHcCCcceeEEEe
Q 017595 344 LANEAGFNGVNYECF 358 (369)
Q Consensus 344 ll~~aGf~~~~~~~~ 358 (369)
+|+++||+++++...
T Consensus 160 ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 160 MFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCcEEEEEee
Confidence 999999998887654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=143.09 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=109.5
Q ss_pred CcceEEEEcCCh---hHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCCC------------CC--
Q 017595 206 QIKQLVDVGGGL---GVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFER------------IP-- 263 (369)
Q Consensus 206 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~------------~p-- 263 (369)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 998888888899999999999 888887654 36899999999762 22
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 264 KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 264 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
..|+|++..+|||+++++...+|++++++|+|||+|++.+...+. +... ....+...... .....++.++|.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~~---~~~~~~~~~~~-~~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPAQ---QKLARITRENL-GEGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHHH---HHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHHH---HHHHHHHHhcC-CCCccCCHHHHHH
Confidence 349999999999999888899999999999999999999987532 1111 11222222211 2456789999999
Q ss_pred HHHHcCCccee
Q 017595 344 LANEAGFNGVN 354 (369)
Q Consensus 344 ll~~aGf~~~~ 354 (369)
+| +||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998776
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=141.71 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=114.5
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCCC--CEEEeccccccCChhH
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH 281 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~ 281 (369)
..+|||||||+|.++..+++. +.+++++|. +.+++.+++ .+++.++.+|+.+ +++.+ |+|++.+++||+++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 579999999999999999988 458999999 888877765 4789999999988 55543 9999999999998778
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEec-C
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV-C 360 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~ 360 (369)
...+|++++++|+|||++++.....+..... .. .......++.++|.++|+++||+++++.... .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~--------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPM------YH--------PVATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEE------CC--------SSSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhh------hc--------hhhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 8999999999999999999988765432100 00 0112345789999999999999999987665 4
Q ss_pred ceeEEE
Q 017595 361 NFCIIE 366 (369)
Q Consensus 361 ~~~vi~ 366 (369)
++..+.
T Consensus 186 p~~~l~ 191 (203)
T 3h2b_A 186 PHAYLT 191 (203)
T ss_dssp SEEEEE
T ss_pred cchhhh
Confidence 455444
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=145.43 Aligned_cols=163 Identities=13% Similarity=0.065 Sum_probs=121.9
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCC
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGN 257 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d 257 (369)
+..........+++.++.+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4444444455677766545677899999999999999999986 578999999 8887766542 579999999
Q ss_pred CCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc
Q 017595 258 MFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR 334 (369)
Q Consensus 258 ~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 334 (369)
+.+ +++.+ |+|++..++||++ ...+|++++++|||||++++.+........... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66543 9999999999994 679999999999999999999987654321100 0111111111 223
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEec
Q 017595 335 ERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.++.++|.++++++||+++++....
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999887653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=141.30 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=114.6
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEe
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILM 270 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~ 270 (369)
+.+.+.++ .....+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++.+ |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 56778999999999999999997 6789999999 8899988887899999999988 66543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
.+++||++ +...+|++++++|| ||++++.+...+..... +. ....... . .......++.+++. +|+++||
T Consensus 101 ~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~~---~~~~~~~-~-~~~~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-WL---YDYFPFL-W-EDALRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCC-GG---GGTCHHH-H-HHHHTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHH-HH---HHHHHHH-h-hhhhhhCCCHHHHH-HHHHcCC
Confidence 99999994 46799999999999 99999998854332111 10 0111101 1 11123455778889 9999999
Q ss_pred cceeEEEec
Q 017595 351 NGVNYECFV 359 (369)
Q Consensus 351 ~~~~~~~~~ 359 (369)
+.+++....
T Consensus 171 ~~v~~~~~~ 179 (261)
T 3ege_A 171 RRVEAIPFL 179 (261)
T ss_dssp SEEEEEECC
T ss_pred CceeEEEec
Confidence 998886653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=146.34 Aligned_cols=151 Identities=21% Similarity=0.375 Sum_probs=113.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC--CEEEeccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG--DAILMKWI 273 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~--D~v~~~~v 273 (369)
+....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999999 888776654 2579999999987 55543 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC---CcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT---PEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
+||+++. ..+|++++++|+|||++++.+...... +....... ....+.......++..++..+|.++|+++||
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIE--AWNCLIRVQAYMKGNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHH--HHHHHHHHHHHTTCCTTGGGGHHHHHHHTTC
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHH--HHHHHHHHHHhcCCCcchHHHHHHHHHHCCC
Confidence 9999764 489999999999999999998643211 11111111 1111111111225666788899999999999
Q ss_pred cceeEEEe
Q 017595 351 NGVNYECF 358 (369)
Q Consensus 351 ~~~~~~~~ 358 (369)
+++++...
T Consensus 191 ~~v~~~~~ 198 (276)
T 3mgg_A 191 EKIRVEPR 198 (276)
T ss_dssp EEEEEEEE
T ss_pred CeEEEeeE
Confidence 99988654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=142.15 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=115.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 265 (369)
..++..+..+....+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345555544566789999999999999999999986 9999999 7777765432 469999999977 65543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 --DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++..++||++ ...+|++++++|+|||++++.+........... ....... . ....++.++|.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAE------IEDFWMD-A--YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHH------HHHHHHH-h--CCCCCCHHHHHH
Confidence 9999999999983 468999999999999999999975333221111 1111111 1 233568999999
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
+++++||+++++...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987665
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=143.03 Aligned_cols=153 Identities=13% Similarity=0.072 Sum_probs=115.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 264 (369)
+..+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345555565 6677899999999999999999987 678999999 8887766432 589999999988 4433
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 265 G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 265 ~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
. |+|++..++||+++ ..++|++++++|||||++++.+......+...... ..+. .......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA--QACG------VSSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHH--HTTT------CSCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHH--HHHh------cccccccCCHHHHHH
Confidence 3 99999999999964 56899999999999999999987654432211100 0000 011224578999999
Q ss_pred HHHHcCCcceeEEEe
Q 017595 344 LANEAGFNGVNYECF 358 (369)
Q Consensus 344 ll~~aGf~~~~~~~~ 358 (369)
+++++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-17 Score=147.54 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=118.1
Q ss_pred cCCcceEEEEcCChhHHHHHHH-HhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCC-CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIIT-SRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKG-DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~v~~~~ 272 (369)
+....+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 3467899999999999999996 6789999999999 8887766532 459999999988 55644 9999999
Q ss_pred ccccCChhH-HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchH--H-----HhhhhhhhHHHHHhhcCC--ccCCHHHHH
Q 017595 273 ILHNWDDEH-CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATA--A-----AREASMTDIIMLMQFSGG--RERTTQEFM 342 (369)
Q Consensus 273 vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~--~-----~~~~~~~d~~~~~~~~~~--~~~t~~e~~ 342 (369)
++||+++.. ...+|++++++|||||++++.+...+....... . ..........+......+ ..++.++|.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 999996544 457999999999999999998876543321100 0 000000001111111111 347999999
Q ss_pred HHHHHcCCcceeEEEec-CceeEEEEeC
Q 017595 343 ALANEAGFNGVNYECFV-CNFCIIEFIK 369 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 369 (369)
++|+++||+++++.... .....+.++|
T Consensus 276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999998655 3344555554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=142.99 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=115.5
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~- 265 (369)
.+++.++.+....+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 44444443557789999999999999999998 8889999999 8877766542 679999999987 65543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++..++||++ ...+|++++++|||||++++.+........... ....... . ....++.++|.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMD-A--YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHH-h--CCCCCCHHHHHHH
Confidence 9999999999993 468999999999999999999986433322211 1111111 1 2345689999999
Q ss_pred HHHcCCcceeEEEec
Q 017595 345 ANEAGFNGVNYECFV 359 (369)
Q Consensus 345 l~~aGf~~~~~~~~~ 359 (369)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999987765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=143.63 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=113.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 266 (369)
.+++.+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444433567789999999999999999999995 89999999 7777765432 379999999998 55554 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC-----C---CCCcchHHHhhhhhhhHHHHH-hhcCCccCC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP-----M---VTPEATAAAREASMTDIIMLM-QFSGGRERT 337 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~-----~---~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~t 337 (369)
+|++..++|++++. ..+|++++++|+|||++++.++.. . ++...........+..+.... ...+....+
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 99999999999654 689999999999999999998751 0 111111110011111111111 111444556
Q ss_pred HHHHHHHHHHcCCcceeEEE
Q 017595 338 TQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~ 357 (369)
..++.++|++|||+.+++..
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEE
Confidence 78899999999999887743
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=138.51 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=109.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC-CEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d~~ 281 (369)
....+|||||||+|.++..+++. +.+++++|. +.+++.+++..++.++.+|+.+ +.+.. |+|++..++||+++++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDE 119 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHH
T ss_pred CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHH
Confidence 45689999999999999999987 568999999 8888877655578889999887 53333 9999999999999888
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC-CcceeEEEec
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG-FNGVNYECFV 359 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~~ 359 (369)
...+|++++++|+|||++++............ . ......++.++|.++|+++| |+++++....
T Consensus 120 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 120 LADVLKLIWRALKPGGLFYASYKSGEGEGRDK----L-----------ARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCSSCEECT----T-----------SCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCCcccccc----c-----------chhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 99999999999999999999865443211000 0 00123468999999999999 9999886543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.7e-17 Score=142.33 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=115.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCCC-CEEEe-ccccccCCh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPKG-DAILM-KWILHNWDD 279 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~v~~-~~vlh~~~d 279 (369)
.+..+|||||||+|.++..+++.++ +++++|. +.+++.+++. +++.++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3568999999999999999999976 7888998 8887776643 689999999988 55444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHh--------------------hhhhhhHHHHHhhcCC-----
Q 017595 280 -EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAR--------------------EASMTDIIMLMQFSGG----- 333 (369)
Q Consensus 280 -~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~~----- 333 (369)
++...+|++++++|+|||++++.+...++......... ......+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 67789999999999999999998765543210000000 0000000000000011
Q ss_pred ------ccCCHHHHHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 334 ------RERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 334 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
+.+|.++|.++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777665566778888775
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=145.26 Aligned_cols=173 Identities=11% Similarity=0.129 Sum_probs=118.4
Q ss_pred HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---------CCceEEeCCCCC-
Q 017595 192 IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFE- 260 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~- 260 (369)
.....+++.++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34556666665 2 3349999999999999999988 467999998 8888776542 579999999998
Q ss_pred CCCCC-CEEEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcc--hHHHhhhhhhhHHHHH--------
Q 017595 261 RIPKG-DAILMK-WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA--TAAAREASMTDIIMLM-------- 328 (369)
Q Consensus 261 ~~p~~-D~v~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~--~~~~~~~~~~d~~~~~-------- 328 (369)
+.+.. |+|++. .++|++++++...+|++++++|+|||+|++.....+..... .....+..........
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55554 988854 77888887788999999999999999999987654321000 0000000000000000
Q ss_pred -------------------hhcCCccCCHHHHHHHHHHcCCcceeEEEec------CceeEEEEe
Q 017595 329 -------------------QFSGGRERTTQEFMALANEAGFNGVNYECFV------CNFCIIEFI 368 (369)
Q Consensus 329 -------------------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~ 368 (369)
.....+.++.++|.++|+++||+++++.+.. ....++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0001124599999999999999999998876 224566654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-17 Score=142.29 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=110.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCC-C-CEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPK-G-DAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh 275 (369)
...+|||||||+|.++..+++.+ ..+++++|. +.+++.+++. .++.++.+|+.+ +.+. . |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 56899999999999999999887 568999998 8887766542 358999999877 5554 2 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
|++++....+|++++++|+|||++++.+...+.. . .++ .......++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--------~~~-----~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG--V--------ILD-----DVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS--E--------EEE-----TTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc--c--------eec-----ccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999999875431 0 000 011333468999999999999999998
Q ss_pred EEec
Q 017595 356 ECFV 359 (369)
Q Consensus 356 ~~~~ 359 (369)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=140.66 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=105.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-C-CceEEeCCCCCCCCC-C-CEEEeccccccCChh
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-R-GVKHIGGNMFERIPK-G-DAILMKWILHNWDDE 280 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-rv~~~~~d~~~~~p~-~-D~v~~~~vlh~~~d~ 280 (369)
...+|||||||+|.++..+++.++ +++++|. +.+++.+++. . +++++.+|+.+..+. . |+|++.++|||+++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 557899999999999999999877 6788888 7777766543 2 899999999874333 3 999999999999654
Q ss_pred HHHHHHHHHH-HhCCCCCEEEEEeccCCCCCcchHHHh-hhh---hhhH-HHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 281 HCLTLLKNCY-EAIPENGKIIIIDRMPMVTPEATAAAR-EAS---MTDI-IMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 281 ~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~-~~~---~~d~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
..+|++++ ++|||||++++.++...... ..... ... ...+ ...........++.++|.++|+++||++++
T Consensus 120 --~~~l~~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 120 --VALLKRINDDWLAEGGRLFLVCPNANAVS--RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp --HHHHHHHHHTTEEEEEEEEEEEECTTCHH--HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEcCChHHHH--HHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 68999999 99999999999886533210 00000 000 0000 000011234567999999999999999998
Q ss_pred EEEe
Q 017595 355 YECF 358 (369)
Q Consensus 355 ~~~~ 358 (369)
+...
T Consensus 196 ~~~~ 199 (250)
T 2p7i_A 196 RSGI 199 (250)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 8643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=136.55 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=108.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCCC--CEEEeccccccCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPKG--DAILMKWILHNWD 278 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 278 (369)
...+|||||||+|.++..+++. +.+++++|. +.+++.+++. .++.++.+|+.+ +++.. |+|++.+++||++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 5679999999999999999988 568999998 8887776653 789999999988 66543 9999999999995
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+ ...+|++++++|+|||++++.+.......... ..... .........++.+++.++++++||++++....
T Consensus 131 ~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 E--PLRALNEIKRVLKSDGYACIAILGPTAKPREN---SYPRL-----YGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp C--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGG---GGGGG-----GTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred C--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhh---hhhhh-----ccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 4 56899999999999999999986543321110 00000 00011234578999999999999999988754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-17 Score=134.78 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=114.1
Q ss_pred HHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCCCCCC--CCEEEeccc
Q 017595 198 LDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFERIPK--GDAILMKWI 273 (369)
Q Consensus 198 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~--~D~v~~~~v 273 (369)
++.++ .....+|||||||+|.++..+++.+. +++++|. +.+++.+++ .++++++.+| .+++. .|+|++..+
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANS 84 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESC
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccc
Confidence 33344 55678999999999999999999874 8999998 777777655 4789999999 44443 399999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcce
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV 353 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 353 (369)
+||+++ ...+|+++++.|+|||++++.+.......... .....++.++|.++++ ||+++
T Consensus 85 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~~ 143 (170)
T 3i9f_A 85 FHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVVE 143 (170)
T ss_dssp STTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEEE
T ss_pred hhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEEE
Confidence 999954 56899999999999999999998765432111 0122368999999998 99999
Q ss_pred eEEEecCceeEEEEe
Q 017595 354 NYECFVCNFCIIEFI 368 (369)
Q Consensus 354 ~~~~~~~~~~vi~~~ 368 (369)
++.........+.+.
T Consensus 144 ~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 144 KRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEECSSTTEEEEEEE
T ss_pred EccCCCCceEEEEEe
Confidence 999888766666554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=138.26 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=106.7
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC-C-CEEEeccccccC
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK-G-DAILMKWILHNW 277 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~v~~~~vlh~~ 277 (369)
.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999876 5678999999 7777766532 4699999999983333 3 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
++++...+|++++++|+|||++++.+......... .....+.++|.++|+++||+++++..
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 98889999999999999999999988755432110 11225799999999999999999877
Q ss_pred ec
Q 017595 358 FV 359 (369)
Q Consensus 358 ~~ 359 (369)
..
T Consensus 207 ~~ 208 (235)
T 3lcc_A 207 NP 208 (235)
T ss_dssp CT
T ss_pred cC
Confidence 65
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=136.16 Aligned_cols=142 Identities=8% Similarity=-0.015 Sum_probs=106.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------------------CCCceEEeC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------------------YRGVKHIGG 256 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~ 256 (369)
.++..+. .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..+++++.+
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3344444 456789999999999999999988 468999999 888876643 257999999
Q ss_pred CCCC-CCC--C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 257 NMFE-RIP--K-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 257 d~~~-~~p--~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
|+++ +.+ . .|+|++..++|++++++..+++++++++|||||+++++....+... ....
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~------------------~~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL------------------LEGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS------------------SSSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc------------------cCCC
Confidence 9988 543 2 3999999999999988888999999999999999555543322110 0001
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
....+.+++.+++++ ||+++.+....
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 122579999999988 99987765543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=136.95 Aligned_cols=161 Identities=9% Similarity=0.075 Sum_probs=112.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hH------HHHhCCCC-------CCceEEeCC-C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PH------VIQNAPSY-------RGVKHIGGN-M 258 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~rv~~~~~d-~ 258 (369)
..+++.++ .....+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 45566565 6677899999999999999999995 8889999999 53 55544321 579999998 5
Q ss_pred CC---CCCC--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhc--
Q 017595 259 FE---RIPK--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFS-- 331 (369)
Q Consensus 259 ~~---~~p~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 331 (369)
.. +++. .|+|++..++||+++.. .+++.++++++|||++++.+...+..................+.....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 3343 39999999999997764 478888888888999999998876543221111011111101110000
Q ss_pred -C--CccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 332 -G--GRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 332 -~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
. ...++.++|.++++++||+++++...
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 1 23579999999999999999887665
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=147.02 Aligned_cols=144 Identities=19% Similarity=0.295 Sum_probs=111.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC--------------CCceEEeCCCCC-------C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY--------------RGVKHIGGNMFE-------R 261 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~-------~ 261 (369)
....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999986 8899999999 8888776543 689999999987 4
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHH
Q 017595 262 IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQ 339 (369)
Q Consensus 262 ~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 339 (369)
++.+ |+|++..++|++++ ...+|++++++|||||+|++.+.......... . ......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~-----~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEA-A-----QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHH-H-----HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHh-H-----hhhHHHhhc-ccccCCCHH
Confidence 5543 99999999999965 56999999999999999999987654322111 0 011111111 234567899
Q ss_pred HHHHHHHHcCCcceeEEE
Q 017595 340 EFMALANEAGFNGVNYEC 357 (369)
Q Consensus 340 e~~~ll~~aGf~~~~~~~ 357 (369)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-16 Score=137.17 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=108.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----C-------CCceEEeCCCCC-CCCCC--CEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----Y-------RGVKHIGGNMFE-RIPKG--DAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-------~rv~~~~~d~~~-~~p~~--D~v~ 269 (369)
+...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .++.++.+|+.+ +++.. |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35689999999999999999988 568999998 777665543 1 258999999988 65543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh--------------cCCc
Q 017595 270 MKWILHNWDDE-HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF--------------SGGR 334 (369)
Q Consensus 270 ~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------~~~~ 334 (369)
+..++|++++. ....+|++++++|+|||++++.+......... . .......+...... ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999754 36689999999999999999999876432211 1 11111111111000 0013
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEe
Q 017595 335 ERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
.++.++|.++|+++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 569999999999999999988643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-16 Score=145.20 Aligned_cols=215 Identities=9% Similarity=-0.025 Sum_probs=140.1
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCCCCCCh
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQDGVSL 130 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~~~~~~ 130 (369)
++|..| . +|.|+++||+.+|+ +++.+++||+.|++.|+++.. + + |++|+.+..++...+....
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~------~-~-~~lt~~~~~~l~~~~~~~~ 109 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE------D-G-VKLTEKGEELVAEYGIGKR 109 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS------S-S-SEECHHHHHHHHHHTCCCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC------C-C-EEECHHHHHHHHhcCcccc
Confidence 779988 4 38999999999999 999999999999999999863 2 4 9999987755433211111
Q ss_pred HHHH-HHhc-----ChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCc
Q 017595 131 CPLL-AMAG-----DQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGF 204 (369)
Q Consensus 131 ~~~~-~~~~-----~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 204 (369)
.+.+ .... ...+...|..+.+.++....+. ..+.. ....++ ....... .... .. .
T Consensus 110 ~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~-----~~~~~~--~~~~~~l---------~~~~-~~-~ 170 (373)
T 2qm3_A 110 YDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFDQ-----AYVTPE--TTVARVI---------LMHT-RG-D 170 (373)
T ss_dssp CC------------CGGGHHHHHHHHHHHTTCCCCC-GGGTC-----CCBCHH--HHHHHHH---------HHHH-TT-C
T ss_pred ccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcCC-----eecCHH--HHHHHHH---------HHhh-cC-C
Confidence 0000 0000 1111223445555555432211 01110 000111 1111100 0011 11 2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC----C-CEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK----G-DAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~----~-D~v~~~~ 272 (369)
....+|||+| |+|.++..++...|+.+++++|+ +.+++.+++. .+++++.+|+.+++|. . |+|++..
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 2457999999 99999999999988889999999 8888877642 3899999999885442 3 9999988
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.++.. ....++++++++|+|||++++.+..
T Consensus 250 p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 76654 2478999999999999977666654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=134.30 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=103.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------CCceEEeCCCCC-CCC--CCCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----------RGVKHIGGNMFE-RIP--KGDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p--~~D~v~ 269 (369)
....+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ++++++.+|+.. +.+ ..|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 3567999999999999999999999899999999 8887766532 289999999865 333 239999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH----HHH
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM----ALA 345 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~ll 345 (369)
+..++||+++++..++|++++++|||||.+++..... ....+......... .......++.+++. +++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 179 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE-------YNVKFANLPAGKLR-HKDHRFEWTRSQFQNWANKIT 179 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH-------HHHHTC------------CCSCBCHHHHHHHHHHHH
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc-------cchhhccccccccc-ccccccccCHHHHHHHHHHHH
Confidence 9999999988888999999999999999777655421 00000000000000 01123446889988 889
Q ss_pred HHcCCccee
Q 017595 346 NEAGFNGVN 354 (369)
Q Consensus 346 ~~aGf~~~~ 354 (369)
+++||+++.
T Consensus 180 ~~~Gf~v~~ 188 (217)
T 3jwh_A 180 ERFAYNVQF 188 (217)
T ss_dssp HHSSEEEEE
T ss_pred HHcCceEEE
Confidence 999998644
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=134.38 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=103.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------CCceEEeCCCCC-CCCC--CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----------RGVKHIGGNMFE-RIPK--GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~--~D~v~ 269 (369)
....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.. +.+. .|+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 3567999999999999999999999899999999 8888776542 289999999966 4332 39999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH----HHH
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM----ALA 345 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~ll 345 (369)
+..++||+++++..++|++++++|||||.+++......... +......... .......++.+++. +++
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~ 179 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFH-------YGNLFEGNLR-HRDHRFEWTRKEFQTWAVKVA 179 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGC-------CCCT-----G-GGCCTTSBCHHHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhh-------hcccCccccc-ccCceeeecHHHHHHHHHHHH
Confidence 99999999988888999999999999996665544211000 0000000011 11123346888888 888
Q ss_pred HHcCCccee
Q 017595 346 NEAGFNGVN 354 (369)
Q Consensus 346 ~~aGf~~~~ 354 (369)
+++||++.-
T Consensus 180 ~~~Gf~v~~ 188 (219)
T 3jwg_A 180 EKYGYSVRF 188 (219)
T ss_dssp HHHTEEEEE
T ss_pred HHCCcEEEE
Confidence 999997544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=138.16 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=112.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCCC-CEEEe
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPKG-DAILM 270 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~v~~ 270 (369)
..+++.++ .....+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++.++.+|+.+ +++.. |+|++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 34455554 55678999999999999999998 7789999999 8887776543 789999999988 55544 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH------hhcCCccCCHHHHHHH
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM------QFSGGRERTTQEFMAL 344 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~t~~e~~~l 344 (369)
.+++|++++ ...+|++++++|+|||++++..+..... .... .......... .......++.++|.++
T Consensus 124 ~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 124 NAMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNI--KYIL---EALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp ESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTT--HHHH---HHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred cchhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcch--HHHH---HHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 999999965 4689999999999999999877643221 1111 1111111100 0001235689999999
Q ss_pred HHHcCCcceeEEEec
Q 017595 345 ANEAGFNGVNYECFV 359 (369)
Q Consensus 345 l~~aGf~~~~~~~~~ 359 (369)
|+++||+++++....
T Consensus 197 l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 197 LEKQGFDVTYAALFN 211 (279)
T ss_dssp HHHHTEEEEEEEEEE
T ss_pred HHHcCCEEEEEEEec
Confidence 999999998875543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-16 Score=137.61 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=110.7
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCC-C-CEEE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPK-G-DAIL 269 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~-~-D~v~ 269 (369)
..+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .+++.++.+|+.+ + +. . |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 35566565 55678999999999999999999999999999999 888877764 4789999999987 5 43 3 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhh---hhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREAS---MTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+..++|++++ ...+|++++++|+|||++++..+................ +...............+.++|.++|+
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (259)
T 2p35_A 101 ANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALS 178 (259)
T ss_dssp EESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHG
T ss_pred EeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHH
Confidence 9999999954 568999999999999999998864322110000000000 00000000001234578999999999
Q ss_pred HcCCcce
Q 017595 347 EAGFNGV 353 (369)
Q Consensus 347 ~aGf~~~ 353 (369)
++||++.
T Consensus 179 ~aGf~v~ 185 (259)
T 2p35_A 179 PKSSRVD 185 (259)
T ss_dssp GGEEEEE
T ss_pred hcCCceE
Confidence 9999743
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=132.58 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=108.8
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---CCceEEeCCCCC-CCCC-C-CEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---RGVKHIGGNMFE-RIPK-G-DAI 268 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~-~-D~v 268 (369)
.+...++ .....+|||||||+|.++..+++... .+++++|. +.+++.+++. .++.++.+|+.+ +++. . |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555554 44668999999999999999998743 38899998 7777766543 479999999987 5554 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC--CCcchHHH--------hhhhhh-----hHHHHHhhcCC
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV--TPEATAAA--------REASMT-----DIIMLMQFSGG 333 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~--~~~~~~~~--------~~~~~~-----d~~~~~~~~~~ 333 (369)
++..++||+++ ...+|++++++|+|||++++....... .....+.. ...... ...........
T Consensus 112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 99999999954 568999999999999999997642100 00000000 000000 00001001122
Q ss_pred ccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 334 RERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 334 ~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
..++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3468999999999999999988754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=137.21 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=112.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-C-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-R-IP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~p 263 (369)
+..++..++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++
T Consensus 58 l~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 58 LDRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL 133 (285)
T ss_dssp HHHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC
T ss_pred HHHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc
Confidence 345566554 2 3579999999999999999988 568999999 8787766542 679999999987 3 34
Q ss_pred C-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHh-------hcCCc
Q 017595 264 K-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQ-------FSGGR 334 (369)
Q Consensus 264 ~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~ 334 (369)
. . |+|++..++||+++ ...+|++++++|||||++++......... ................ .....
T Consensus 134 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDY 208 (285)
T ss_dssp SSCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSC
T ss_pred CCCceEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCC
Confidence 3 3 99999999999965 46899999999999999999876432100 0000000000010000 01124
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEec
Q 017595 335 ERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.++.++|.++|+++||+++++....
T Consensus 209 ~~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 209 PRDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCHHHHHHHHHHCCCceeeeeeEE
Confidence 5689999999999999999887764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=134.83 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=110.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---CCCceEEeCCCCC-CCCCC--CE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---YRGVKHIGGNMFE-RIPKG--DA 267 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~~--D~ 267 (369)
..+.+.++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++.. |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34555554 446789999999999999999998765 8999998 777776654 3689999999987 66543 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC-----------CCcchHHHhhhhhhh-----HHHHHhhc
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV-----------TPEATAAAREASMTD-----IIMLMQFS 331 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~-----------~~~~~~~~~~~~~~d-----~~~~~~~~ 331 (369)
|++..++||++ +...+|++++++|+|||++++....... .............++ ........
T Consensus 112 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (253)
T 3g5l_A 112 VLSSLALHYIA--SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV 189 (253)
T ss_dssp EEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred EEEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence 99999999994 4679999999999999999987442100 000000000000000 00000000
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 332 GGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 332 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
....+|.++|.++|+++||+++++....
T Consensus 190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 190 QKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred ccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 1123499999999999999999987543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=126.86 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=107.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCC-C-CEEEe
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPK-G-DAILM 270 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~-~-D~v~~ 270 (369)
.++..+ .....+|||||||+|.++..+++. +.+++++|. +.+++.+++ .+++.++.+|+.+ +++. . |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455544 346689999999999999999987 568999998 777776654 3679999999988 5653 3 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 271 K-WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 271 ~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
. .++|++++++...+|+++++.|+|||++++..... ..++.++|.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888999999999999999999865321 1256889999999999
Q ss_pred CcceeEEEe
Q 017595 350 FNGVNYECF 358 (369)
Q Consensus 350 f~~~~~~~~ 358 (369)
|+++++...
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=135.14 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=107.0
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---CCCceEEeCCCCC-CCCC-------CCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---YRGVKHIGGNMFE-RIPK-------GDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~-------~D~v~~~ 271 (369)
.....+|||||||+|.++..+++.++ +++++|. +.+++.+++ ..+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34668999999999999999999988 7888888 777776643 3589999999988 3321 4899999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhh-----hhHHHHHhh-cCCccCCHHHHHHHH
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM-----TDIIMLMQF-SGGRERTTQEFMALA 345 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-----~d~~~~~~~-~~~~~~t~~e~~~ll 345 (369)
.++|++++++...+|++++++|||||+++|.+...++.. ........ ..+...... .....++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999988889999999999999999999998654311 00000000 000001000 011236899999999
Q ss_pred HHcCCcceeEEE
Q 017595 346 NEAGFNGVNYEC 357 (369)
Q Consensus 346 ~~aGf~~~~~~~ 357 (369)
+||++++.-.
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999987644
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=129.51 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=102.0
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCC-C-CEEEeccccccCChhHH
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPK-G-DAILMKWILHNWDDEHC 282 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~-~-D~v~~~~vlh~~~d~~~ 282 (369)
..+|||||||+|.++..++.. +++|. +.+++.+++. ++.++.+|+.+ +++. . |+|++..++||+++ .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~ 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD--P 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--H
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC--H
Confidence 679999999999999988765 88888 7777777655 89999999987 5554 3 99999999999954 4
Q ss_pred HHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 283 LTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 283 ~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
..+|++++++|+|||++++.+..... ... ....... ...........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRES----FLG-REYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS----HHH-HHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCcc----HHH-HHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 68999999999999999998865321 111 0000000 0000011244579999999999999999988765
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=127.71 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=109.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~-D 266 (369)
.+++.++ .....+|||||||+|.++..+++. +.+++++|. +.+++.+++. +++.++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444444 445679999999999999999987 568999999 7777766542 479999999987 55444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+|++..++||+++++...+|++++++|+|||++++.+.......... ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999888889999999999999999999887654421100 01233468899999997
Q ss_pred HcCCcceeEEEe
Q 017595 347 EAGFNGVNYECF 358 (369)
Q Consensus 347 ~aGf~~~~~~~~ 358 (369)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 998887543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=134.28 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=103.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC--CEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG--DAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~--D~v~~~~vl 274 (369)
.....+|||||||+|.++..+++. ..+++++|. +.+++.+++ .+++.++.+|+.+ +++.+ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 468999998 777776543 3689999999987 55543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhc---CCccCCHHHHHHHHHHcCCc
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFS---GGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 351 (369)
|++++ ...+|++++++|+|||++++. ...++. ............+....... .....+.++|.++|+++||+
T Consensus 115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAEA--SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEECC--CHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCCc--cHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 99964 568999999999999999988 221110 11000011111111110000 11245789999999999999
Q ss_pred ceeEE
Q 017595 352 GVNYE 356 (369)
Q Consensus 352 ~~~~~ 356 (369)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=129.44 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=102.1
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEec
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILMK 271 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~~ 271 (369)
..+++.+.......+|||||||+|.++..+. .+++++|.... ++.++.+|+.+ +++.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455544424456899999999999998873 57888887322 67899999988 66543 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.++|+ ++...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 4467899999999999999999875310 12689999999999999
Q ss_pred ceeEEEecCceeEEEEeC
Q 017595 352 GVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 352 ~~~~~~~~~~~~vi~~~~ 369 (369)
+++.........+++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 998776666667777654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-15 Score=132.89 Aligned_cols=162 Identities=10% Similarity=0.009 Sum_probs=110.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CEEEecc-cccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DAILMKW-ILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~v~~~~-vlh~ 276 (369)
...+|||||||+|.++..+++. ..+++++|. +.+++.+++. .++.++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5679999999999999999988 457999999 8887766542 279999999987 55544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCCEEEEEeccCC-------CCCcchHHHh----hh-------hhhhHHHHHhh-------
Q 017595 277 WD-DEHCLTLLKNCYEAIPENGKIIIIDRMPM-------VTPEATAAAR----EA-------SMTDIIMLMQF------- 330 (369)
Q Consensus 277 ~~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~-------~~~~~~~~~~----~~-------~~~d~~~~~~~------- 330 (369)
++ +++...+|++++++|+|||++++...... .......... +. ....+.++...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 94 46788999999999999999987433110 0000000000 00 00000000000
Q ss_pred ---cCCccCCHHHHHHHHHHcCCcceeEEEe--------cCceeEEEEeC
Q 017595 331 ---SGGRERTTQEFMALANEAGFNGVNYECF--------VCNFCIIEFIK 369 (369)
Q Consensus 331 ---~~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~ 369 (369)
...+.++.++|.++|+++||+++++... .+...++.++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 0124469999999999999999998754 23455666664
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=130.37 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=79.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CEEEecc-cccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DAILMKW-ILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~v~~~~-vlh~ 276 (369)
...+|||||||+|.++..+++. .+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999999877 68999999 8887766542 579999999987 55544 9999986 9999
Q ss_pred C-ChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 277 W-DDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 277 ~-~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+ +.++...+|++++++|+|||++++.
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 8 5567889999999999999999873
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-16 Score=140.63 Aligned_cols=145 Identities=15% Similarity=0.236 Sum_probs=104.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------------------------------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------------------------------------ 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 248 (369)
...+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999999 7777765432
Q ss_pred ----------------------------CCceEEeCCCCCCC------CC-C-CEEEeccccccC----ChhHHHHHHHH
Q 017595 249 ----------------------------RGVKHIGGNMFERI------PK-G-DAILMKWILHNW----DDEHCLTLLKN 288 (369)
Q Consensus 249 ----------------------------~rv~~~~~d~~~~~------p~-~-D~v~~~~vlh~~----~d~~~~~~L~~ 288 (369)
.+|+|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999998632 22 3 999999999765 67788999999
Q ss_pred HHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH--cCCcceeEEEe
Q 017595 289 CYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE--AGFNGVNYECF 358 (369)
Q Consensus 289 ~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 358 (369)
++++|+|||+|++....... ............. .. .......+++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~------y~~~~~~~~~~~~-~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSS------YGKRKTLTETIYK-NY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHH------HHTTTTSCHHHHH-HH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchh------hhhhhcccHHHHh-hh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999875321110 0000000000000 01 1222347899999998 99998887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=133.53 Aligned_cols=153 Identities=18% Similarity=0.137 Sum_probs=108.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC-----CC-C-CCE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER-----IP-K-GDA 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-----~p-~-~D~ 267 (369)
.+++.+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+ . .|+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4444444 345589999999999999999988 568999999 88888887778889999887651 12 2 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh-----cCCccCCHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF-----SGGRERTTQEFM 342 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~t~~e~~ 342 (369)
|++.+++| + ++...+|++++++|+|||++++.+............ ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-H--QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-S--SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-h--hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5 345689999999999999999988765432211000 000000000000 011345999999
Q ss_pred HHHHHcCCcceeEEE
Q 017595 343 ALANEAGFNGVNYEC 357 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~ 357 (369)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999999865
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=131.21 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=108.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC---CCCC-C-CEE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE---RIPK-G-DAI 268 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~-~-D~v 268 (369)
..+++.++ ....+|||||||+|.++..+++. + .+++++|. +.+++.+++.. ..++.+|+.+ +++. . |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 45555554 45689999999999999999988 4 89999999 78877766442 4788999875 3343 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHH----HhhcCCccCCHHHHHHH
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIML----MQFSGGRERTTQEFMAL 344 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~~t~~e~~~l 344 (369)
++..++||+++. ..+|+++++.|+|||++++..+..... ...... ....+... ......+.++.++|.++
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPL-LAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHH-HTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHH-hcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 999999999654 589999999999999999987653221 000000 00000000 00001245699999999
Q ss_pred HHHcCCcceeEEEec
Q 017595 345 ANEAGFNGVNYECFV 359 (369)
Q Consensus 345 l~~aGf~~~~~~~~~ 359 (369)
++++||+++++....
T Consensus 172 l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 172 FLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHcCCeEEEEEecc
Confidence 999999999887654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=129.63 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=85.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~ 281 (369)
...+|||||||+|.++..|++.+. +++++|+ +.+++.+++.+++.++.+|+.+ +++.+ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 457999999999999999998874 7899999 8999999999999999999988 77765 99999999998753
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.+++++++++|||||+|++.....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4789999999999999999887544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=131.58 Aligned_cols=140 Identities=18% Similarity=0.135 Sum_probs=95.0
Q ss_pred CCcceEEEEcCChhHHHH----HHHHhCCCCeE--EEcch-hHHHHhCCCC-------CCceE--EeCCCCC-C------
Q 017595 205 EQIKQLVDVGGGLGVTLN----IITSRYPHIEG--VNFDL-PHVIQNAPSY-------RGVKH--IGGNMFE-R------ 261 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~rv~~--~~~d~~~-~------ 261 (369)
....+|||||||+|.++. .++.++|++++ +++|. +.+++.+++. +++.+ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 345799999999997654 45566788854 99999 8887755431 34444 4555432 1
Q ss_pred CCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhc---CCccC
Q 017595 262 IPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFS---GGRER 336 (369)
Q Consensus 262 ~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~ 336 (369)
++. . |+|++.++|||++| ..++|++++++|||||++++.+..... .+.. ... ....... ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~----~~~~----~~~-~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSS----GWDK----LWK-KYGSRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTS----HHHH----HHH-HHGGGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCc----cHHH----HHH-HHHHhccCCCcccCC
Confidence 233 3 99999999999965 468999999999999999998754211 1110 000 0000011 12457
Q ss_pred CHHHHHHHHHHcCCcceeE
Q 017595 337 TTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 337 t~~e~~~ll~~aGf~~~~~ 355 (369)
+.++|.++|+++||++++.
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=127.34 Aligned_cols=133 Identities=9% Similarity=-0.062 Sum_probs=102.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------------------CCCceEEeCCCCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------------------YRGVKHIGGNMFE 260 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~ 260 (369)
....+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 458999999 877776531 2579999999998
Q ss_pred -CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccC
Q 017595 261 -RIP--KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRER 336 (369)
Q Consensus 261 -~~p--~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 336 (369)
+.+ .. |+|+...+||++++++...++++++++|||||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 443 33 9999999999999888889999999999999999766554322100 0011125
Q ss_pred CHHHHHHHHHHcCCcceeEEEe
Q 017595 337 TTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 337 t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+.+++.++|.+ +|+++.....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEecc
Confidence 89999999987 6998776543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=123.18 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=102.5
Q ss_pred CcceEEEEcCCh--hHHHHHHH-HhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCC---C--C---C-CC
Q 017595 206 QIKQLVDVGGGL--GVTLNIIT-SRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFER---I--P---K-GD 266 (369)
Q Consensus 206 ~~~~vLDvG~G~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~--p---~-~D 266 (369)
+..+|||||||+ +..+.+++ +..|+.+++++|. |.+++.++.. .+++++.+|+.++ + | . .|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999997 44445554 4589999999999 9999988652 3699999999872 1 1 1 13
Q ss_pred -----EEEeccccccCChhH-HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHH
Q 017595 267 -----AILMKWILHNWDDEH-CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQE 340 (369)
Q Consensus 267 -----~v~~~~vlh~~~d~~-~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 340 (369)
+|++..+|||+++++ ...+|++++++|+|||+|++.+.+.+..+ .. .....+...... .....||.+|
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~~---~~~~~~~~~~~g-~p~~~rs~~e 231 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--QE---VGRVAREYAARN-MPMRLRTHAE 231 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--HH---HHHHHHHHHHTT-CCCCCCCHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--HH---HHHHHHHHHhcC-CCCccCCHHH
Confidence 689999999998876 67999999999999999999998765321 11 111112111111 1345689999
Q ss_pred HHHHHHHcCCccee
Q 017595 341 FMALANEAGFNGVN 354 (369)
Q Consensus 341 ~~~ll~~aGf~~~~ 354 (369)
+.++|. ||++++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999994 999665
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-15 Score=130.58 Aligned_cols=150 Identities=7% Similarity=-0.067 Sum_probs=105.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC--CEEEeccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG--DAILMKWILH 275 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~v~~~~vlh 275 (369)
....+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .++.++.+|+.+ +++.. |+|++..++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 35689999999999985555444 5679999999 8887766542 579999999988 66543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
|++.++..++|++++++|+|||++++.+...++.............+.............++.+++.++|.++||...+.
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 99888889999999999999999999988765432110000000000000000000123568999999999999876654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=129.83 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=100.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCC-CCCC------C--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFE-RIPK------G-- 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~p~------~-- 265 (369)
....+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ .++++++.+|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 888877653 4689999999988 5443 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc---CCCCCcchHHHhhhhhhhHHHHHh-hcCCcc--CCHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM---PMVTPEATAAAREASMTDIIMLMQ-FSGGRE--RTTQ 339 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~---~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~--~t~~ 339 (369)
|+|++..++||+ +...+|+++++.|+|||+|++.+.. ....+.. ...+.-..... ..+... ...+
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~w~~p~~~ 185 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEF------DDLMIEVPYGKQGLGPYWEQPGRS 185 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGG------TTHHHHHHHCTTTTGGGSCTTHHH
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHH------HHHHHHhccCcccccchhhchhhH
Confidence 999999999999 4568999999999999999995443 2221111 11111111000 001111 4566
Q ss_pred HHHHHHHHcCCc
Q 017595 340 EFMALANEAGFN 351 (369)
Q Consensus 340 e~~~ll~~aGf~ 351 (369)
.+.++++++||.
T Consensus 186 ~~~~~l~~~gfp 197 (299)
T 3g5t_A 186 RLRNMLKDSHLD 197 (299)
T ss_dssp HHHTTTTTCCCC
T ss_pred HHHHhhhccCCC
Confidence 779999999994
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=113.01 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=96.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCC--CCEEEeccccccCChh--
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPK--GDAILMKWILHNWDDE-- 280 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~--~D~v~~~~vlh~~~d~-- 280 (369)
...+|||+|||+|.++..++++. +++++|+ +.+++. .++++++.+|+.++++. .|+|+++..+|+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 35699999999999999999887 8999999 777777 56899999999986553 3999999998865544
Q ss_pred -----HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 281 -----HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 281 -----~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
+...+++++.+.| |||++++.+... .+.+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 4567899999999 999999877421 13567889999999999888
Q ss_pred EEec
Q 017595 356 ECFV 359 (369)
Q Consensus 356 ~~~~ 359 (369)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 7665
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=125.76 Aligned_cols=149 Identities=15% Similarity=0.066 Sum_probs=106.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CC-CC-C-CEEEecc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RI-PK-G-DAILMKW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~-p~-~-D~v~~~~ 272 (369)
....+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .++.++.+|+.+ ++ +. . |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45689999999999999998776 4568999999 7777766542 468999999988 55 33 3 9999999
Q ss_pred cccc--CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhh--------------------h----hhhhHHH
Q 017595 273 ILHN--WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAARE--------------------A----SMTDIIM 326 (369)
Q Consensus 273 vlh~--~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~--------------------~----~~~d~~~ 326 (369)
++|+ .+.++...+|++++++|+|||++++..+.... ..... . ....+..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 216 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV-----ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 216 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH-----HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH-----HHHHHccCccCCeeEEEEeCccccccccccceEEEEE
Confidence 9998 56677889999999999999999998754210 00000 0 0000000
Q ss_pred HHh--hcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 327 LMQ--FSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 327 ~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
... ......++.++|.++++++||+++++....
T Consensus 217 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 217 LDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp TTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred chhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 000 001234689999999999999999887653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=130.00 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC-C---CCC-C-CE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE-R---IPK-G-DA 267 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~---~p~-~-D~ 267 (369)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+.+ + ++. . |+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 456899999999999999999984 48999998 777776643 1578899999887 5 444 3 99
Q ss_pred EEec-cccccCCh-----hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 268 ILMK-WILHNWDD-----EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 268 v~~~-~vlh~~~d-----~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|++. +++||+++ ++..++|++++++|||||++++..+
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998 99999987 7788999999999999999998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-14 Score=127.91 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=103.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----C------------------------------
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----R------------------------------ 249 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 249 (369)
....+|||||||+|.++..++...+ .+++++|. +.+++.+++. +
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999999888766 57899998 7777765321 1
Q ss_pred -Cc-eEEeCCCCC--CCCC----C-CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhh
Q 017595 250 -GV-KHIGGNMFE--RIPK----G-DAILMKWILHNWDD--EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAARE 318 (369)
Q Consensus 250 -rv-~~~~~d~~~--~~p~----~-D~v~~~~vlh~~~d--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 318 (369)
++ .++.+|+.+ +.+. . |+|++..+||++++ ++...+|++++++|+|||++++.+.......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~-------- 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY-------- 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE--------
Confidence 17 899999987 2233 3 99999999995433 4678999999999999999999986432100
Q ss_pred hhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 319 ASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 319 ~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
... ...+ .....+.++|.++|+++||+++++....
T Consensus 206 -~~~----~~~~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIG----EQKF-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EET----TEEE-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcC----Cccc-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000 0000 1234588999999999999999887654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-14 Score=126.24 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=106.5
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DA 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 267 (369)
.+++.++ .....+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3333343 335789999999999999999988 458999998 7777766542 289999999988 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANE 347 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 347 (369)
|++..++||++++....+|+++++.|+|||++++............ ......++.+++.++++
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~- 250 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYK- 250 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTT-
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhc-
Confidence 9999999999998899999999999999999888777654321110 01233467888999985
Q ss_pred cCCcceeEE
Q 017595 348 AGFNGVNYE 356 (369)
Q Consensus 348 aGf~~~~~~ 356 (369)
+|++++..
T Consensus 251 -~~~~~~~~ 258 (286)
T 3m70_A 251 -DWEFLEYN 258 (286)
T ss_dssp -TSEEEEEE
T ss_pred -CCEEEEEE
Confidence 48887764
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-13 Score=117.23 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=84.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~- 265 (369)
+..++.... ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.++.+|+.+ +.+..
T Consensus 30 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 106 (252)
T 1wzn_A 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (252)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence 344455443 345689999999999999999987 568999999 8887766542 379999999987 55544
Q ss_pred CEEEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 DAILMK-WILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 D~v~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+|++. ..+++++.++..++|++++++|+|||++++.-
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 999886 56677777888999999999999999988643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-14 Score=134.06 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=107.9
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC------CCC-C
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE------RIP-K 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~------~~p-~ 264 (369)
....+++.+. .....+|||||||+|.++..++++. .+++++|+ +.+++.+++. ++......+.. +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666665 6677899999999999999999874 48999999 8888877755 44444332221 122 2
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
.|+|++.++|||++ +...+|++++++|||||++++..+.... .. .. ..++ .. .......++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~-~~-~~~~--~~-~~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGD-----IV-AK-TSFD--QI-FDEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHH-----HH-HH-TCGG--GC-STTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHH-----hh-hh-cchh--hh-hhhhhhcCCHHHHHH
Confidence 39999999999995 4679999999999999999987653211 00 00 0000 00 012445679999999
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999987765
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=130.26 Aligned_cols=139 Identities=13% Similarity=0.083 Sum_probs=97.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----------------------------------
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------------------------------- 248 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 248 (369)
....+|||||||+|.++..++...- .+++++|+ +.+++.+++.
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3568999999999987666554432 26899999 7777754321
Q ss_pred CCce-EEeCCCCCC--CC-----CCCEEEeccccccC-C-hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhh
Q 017595 249 RGVK-HIGGNMFER--IP-----KGDAILMKWILHNW-D-DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAARE 318 (369)
Q Consensus 249 ~rv~-~~~~d~~~~--~p-----~~D~v~~~~vlh~~-~-d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 318 (369)
.++. ++.+|+.+. ++ ..|+|++..+|||. + .++..++|++++++|||||+|++.+.......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~-------- 204 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-------- 204 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--------
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccc--------
Confidence 1233 889999873 22 23999999999985 2 35677899999999999999999876432110
Q ss_pred hhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 319 ASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 319 ~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
.... ..+ ....++.++|.++|+++||+++++...
T Consensus 205 -~~g~----~~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 -MVGK----REF-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp -EETT----EEE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eeCC----eEe-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0000 000 122458999999999999999988654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=125.36 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=82.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCCCCCC-C-CEEEecccccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFERIPK-G-DAILMKWILHN 276 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~-~-D~v~~~~vlh~ 276 (369)
.....+|||||||+|.++..+++.+ .+++++|. +.+++.+++ .++++++.+|+.+..+. . |+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999886 47888998 777765543 36899999999883333 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 277 WDD-EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 277 ~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+++ +...++|++++++|+|||++++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 45568999999999999999987753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-14 Score=119.83 Aligned_cols=130 Identities=13% Similarity=0.061 Sum_probs=104.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCCC-CEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPKG-DAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~v~~~~vlh~ 276 (369)
....+|||||||+|.++..+++ .+..+++++|. +.+++.+++. .+++++.+|+.+..+.. |+|++..++|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3568999999999999999776 56779999999 8777766542 34999999998854444 99999888765
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
+ ..+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 ~-----~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 L-----LDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp H-----HHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred H-----HHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 3 6889999999999999999765321 25678899999999999998
Q ss_pred EecCceeEEEEeC
Q 017595 357 CFVCNFCIIEFIK 369 (369)
Q Consensus 357 ~~~~~~~vi~~~~ 369 (369)
......+++.-.|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8888888776543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-13 Score=117.13 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=99.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh----CCCCCCceEEeCCCCC-----CCCCC-CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN----APSYRGVKHIGGNMFE-----RIPKG-DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~rv~~~~~d~~~-----~~p~~-D~v~~~~ 272 (369)
+.+..+|||||||+|.++..+++.++..+++++|. +.+++. ++..+++.++.+|+.+ +++.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988889999999 766643 3445789999999976 22333 9988
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 273 ILHNWDDE-HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 273 vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
|++++. ....+|+++++.|+|||++++. ............ .. ...+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~---------~~---------~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP---------KE---------IFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH---------HH---------HHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH---------HH---------hhHHHHH-HHHHCCCE
Confidence 555433 3467799999999999999997 211110000000 00 0136777 89999999
Q ss_pred ceeEEEecCc---eeEEEEeC
Q 017595 352 GVNYECFVCN---FCIIEFIK 369 (369)
Q Consensus 352 ~~~~~~~~~~---~~vi~~~~ 369 (369)
.+++...... +.++.++|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9998877644 66665543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-13 Score=120.07 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=109.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC-C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK-G 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~ 265 (369)
++.+++.++ ....+|||||||+|.++..++..+|+.+++++|. +.+++.+++. ++++++.+|++++++. .
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 176 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 176 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence 344555443 3457999999999999999999999999999999 8877766542 5799999999886533 3
Q ss_pred -CEEEec-------------cccccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhh
Q 017595 266 -DAILMK-------------WILHNWDD----------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321 (369)
Q Consensus 266 -D~v~~~-------------~vlh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 321 (369)
|+|++. .+++|.|. +....+++++.+.|+|||++++....
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------- 240 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---------------- 240 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS----------------
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----------------
Confidence 999998 34444432 34578999999999999999875210
Q ss_pred hhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe-cCceeEEEEeC
Q 017595 322 TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF-VCNFCIIEFIK 369 (369)
Q Consensus 322 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 369 (369)
.+.+++.++++++||+.+++... .+...++.++|
T Consensus 241 --------------~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 241 --------------QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp --------------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred --------------hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 13667899999999998888764 45566666654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=117.10 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=99.9
Q ss_pred eEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCC--CCEEEeccccccCCh
Q 017595 209 QLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPK--GDAILMKWILHNWDD 279 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d 279 (369)
+|||||||+|.++..+++. +.+++++|. +.+++.+++. .++.++.+|+.+ +++. .|+|++. +.|++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999887 468999999 7787776543 379999999988 5553 3999984 345677
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
++...+|++++++|+|||++++......... ..... .......++.+++.++|+ ||+++++...
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~~~~------~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------YNTGG------PKDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------GTSCC------SSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccc-------CCCCC------CCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 7889999999999999999999887643310 00000 000123579999999998 9999887654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=118.07 Aligned_cols=141 Identities=15% Similarity=0.099 Sum_probs=100.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCCC-CCceEEeCCCCC-CCCCC--CEEE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPSY-RGVKHIGGNMFE-RIPKG--DAIL 269 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~v~ 269 (369)
.++..+. ....+|||||||+|.++..+ +. +++++|. +.+++.+++. +++.++.+|+.+ +++.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 25689999999999999887 45 8999999 7777776543 689999999987 66543 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHH--hhcCCccCCHHHHHHHHHH
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLM--QFSGGRERTTQEFMALANE 347 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~~ll~~ 347 (369)
+.+++||+++ ..++|++++++|||||++++.++.... .+.. .... ..... .....+.+|.+++.++|+
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~-~~~~--~~~~~~~~~~~~~~~s~~~l~~~l~- 170 (211)
T 2gs9_A 101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALS----PWAA-LYRR--LGEKGVLPWAQARFLAREDLKALLG- 170 (211)
T ss_dssp EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTS----HHHH-HHHH--HHHTTCTTGGGCCCCCHHHHHHHHC-
T ss_pred EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcC----cHHH-HHHH--HhhccCccccccccCCHHHHHHHhc-
Confidence 9999999964 568999999999999999998875432 1110 0000 00000 011245579999999998
Q ss_pred cCCcceeEE
Q 017595 348 AGFNGVNYE 356 (369)
Q Consensus 348 aGf~~~~~~ 356 (369)
| ++++.
T Consensus 171 -G--~~~~~ 176 (211)
T 2gs9_A 171 -P--PEAEG 176 (211)
T ss_dssp -S--CSEEE
T ss_pred -C--cceeE
Confidence 8 44443
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-13 Score=113.83 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=98.2
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC---CC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP---KG 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p---~~ 265 (369)
.++..++ .....+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4455555 66778999999999999999999999999999999 8888776542 689999999977433 34
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++...++ +...+++++.+.|+|||++++...... +.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHH
Confidence 9999998876 345899999999999999998654310 255678889
Q ss_pred HHcCCcceeE
Q 017595 346 NEAGFNGVNY 355 (369)
Q Consensus 346 ~~aGf~~~~~ 355 (369)
+++|| .+++
T Consensus 156 ~~~g~-~~~~ 164 (204)
T 3e05_A 156 EDHGY-MVEV 164 (204)
T ss_dssp HHTTC-EEEE
T ss_pred HHCCC-ceeE
Confidence 99998 4433
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-14 Score=128.37 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=97.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------------------C---------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------------------R--------------- 249 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~--------------- 249 (369)
...+|||||||+|.+ ..++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 457999999999994 34444445569999999 8777654331 0
Q ss_pred -CceEEeCCCCC--C-----CCC--CCEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHh
Q 017595 250 -GVKHIGGNMFE--R-----IPK--GDAILMKWILHNWDD--EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAR 317 (369)
Q Consensus 250 -rv~~~~~d~~~--~-----~p~--~D~v~~~~vlh~~~d--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 317 (369)
.+.++.+|+.+ + ++. .|+|++..+||++++ ++..++|++++++|||||+|++.+.......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~------- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY------- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceE-------
Confidence 14566778876 2 222 399999999999543 3678999999999999999999865422100
Q ss_pred hhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEec
Q 017595 318 EASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 318 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
...+ .......++.++|.++|+++||+++++....
T Consensus 223 --~~~~-----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 --LAGE-----ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp --EETT-----EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --EcCC-----eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0000 0001234689999999999999998876543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=119.61 Aligned_cols=143 Identities=11% Similarity=0.080 Sum_probs=95.0
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh----CCC------CCCceEEeCCCCC-CCCCC-CEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN----APS------YRGVKHIGGNMFE-RIPKG-DAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~rv~~~~~d~~~-~~p~~-D~v~~ 270 (369)
.....+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++.. |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 44678999999999999999999999999999999 765443 222 3589999999988 55533 66552
Q ss_pred c---ccc--ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 271 K---WIL--HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 271 ~---~vl--h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
. ..+ ||+++. ..+|++++++|||||++++.-.......... .... ...-......+++..++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSVP---EVGE--------HPEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG---GGTT--------CCCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccccc---cccc--------CCccchHHHHHHHHHHH
Confidence 2 222 244332 5899999999999999998433211110000 0000 00001111245588899
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||++.++....
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999998886653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-13 Score=112.47 Aligned_cols=141 Identities=13% Similarity=0.242 Sum_probs=108.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C--CceEEeCCCCCCCCC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R--GVKHIGGNMFERIPK- 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~p~- 264 (369)
+.+++.+. .....+|||+|||+|.++..+++. ..+++++|. +.+++.+++. + +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 556789999999999999999988 678999998 7777765532 3 499999999885543
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 265 G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 265 ~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
. |+|++..++|+ ..+....+++++++.|+|||++++....... ..++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHH
Confidence 3 99999988875 3466789999999999999999998764210 224666
Q ss_pred HHHHcCCcceeEEEecCceeEEEEeC
Q 017595 344 LANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
.+++. |..+++.....+..++.+.|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77776 77788888778888887765
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=125.51 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=92.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC---CCCCC--CEEE----
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE---RIPKG--DAIL---- 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~v~---- 269 (369)
....+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .++.++.+|... +++.. |.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 35689999999999999999887774 7899999 8888877642 568888888754 34442 7765
Q ss_pred -eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHc
Q 017595 270 -MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEA 348 (369)
Q Consensus 270 -~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 348 (369)
....++|+ .+...++++++|+|||||+|++.+..... .......+ .......+.+...|.++
T Consensus 138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~-------~~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCch-------hhhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 45666777 56678999999999999999876532110 00000000 00011245677788899
Q ss_pred CCcceeE
Q 017595 349 GFNGVNY 355 (369)
Q Consensus 349 Gf~~~~~ 355 (369)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9997655
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-14 Score=120.40 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=92.7
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCC-----
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIP----- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p----- 263 (369)
+.+++.++......+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34455454225678999999999999999999999999999999 8888877754 168888888877433
Q ss_pred -C-CCEEEeccccc------cCChhHH------------------HHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHh
Q 017595 264 -K-GDAILMKWILH------NWDDEHC------------------LTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAR 317 (369)
Q Consensus 264 -~-~D~v~~~~vlh------~~~d~~~------------------~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 317 (369)
. .|+|++...++ +++++.. ..++++++++|+|||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 2 39999964443 3322222 688999999999999966665421
Q ss_pred hhhhhhHHHHHhhcCCccCCHHHHHHHHH--HcCCcceeEEEec-CceeEEEEe
Q 017595 318 EASMTDIIMLMQFSGGRERTTQEFMALAN--EAGFNGVNYECFV-CNFCIIEFI 368 (369)
Q Consensus 318 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~ 368 (369)
...+++.++++ ++||..+++.... +...++.++
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 12456777888 8999988887765 333444443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=125.27 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=90.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---------------CCCceEEeCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---------------YRGVKHIGGN 257 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d 257 (369)
+..+++.+. +....+|||||||+|.++..++...+..+++++|+ +.+++.|+. .++|+++.+|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 445666665 67789999999999999999998887667999999 666554432 2689999999
Q ss_pred CCC-CCC----CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCC
Q 017595 258 MFE-RIP----KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTP 310 (369)
Q Consensus 258 ~~~-~~p----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~ 310 (369)
+++ +++ ..|+|+++.+++ + ++..+.|+++++.|||||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 553 359999887763 3 5667888999999999999999999887754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=115.73 Aligned_cols=145 Identities=10% Similarity=0.065 Sum_probs=91.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchh-HH-HHhC---CC------CCCceEEeCCCCCCCCC--CCEEEec
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP-HV-IQNA---PS------YRGVKHIGGNMFERIPK--GDAILMK 271 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~-~~~a---~~------~~rv~~~~~d~~~~~p~--~D~v~~~ 271 (369)
....+|||||||+|.++..++++.|+.+++++|+. .. ++.+ ++ .+++.++.+|+.+- |. .|+|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 35679999999999999999999999999999983 44 3333 43 25799999998762 32 2666555
Q ss_pred cccccCChh------HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 272 WILHNWDDE------HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 272 ~vlh~~~d~------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
.+.+.|+.. ....+|++++++|||||++++......... .... ....... . .......+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~~~----~~~~~~~---~-~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-EAEI----KKRGLPL---L-SKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-hchh----hhcCCCC---C-ChhhcchHHHHHHH
Confidence 554444321 113689999999999999999544332210 0000 0000000 0 00001123599999
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
+++||++.++....
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999988876654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=109.59 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=81.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CC-CceEEeCCCCCCCC---C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YR-GVKHIGGNMFERIP---K 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-rv~~~~~d~~~~~p---~ 264 (369)
.+++.+. .....+|||||||+|.++..+++.+|..+++++|. +.+++.+++ .+ ++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3444454 55678999999999999999999999999999999 777776653 23 78 88899876443 2
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|+|++..++|+ ..+++++++.|+|||++++....
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 399999999987 47899999999999999987753
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.4e-12 Score=109.18 Aligned_cols=140 Identities=11% Similarity=0.144 Sum_probs=98.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHh----CCCCCCceEEeCCCCCC--CC---CC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQN----APSYRGVKHIGGNMFER--IP---KG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~----a~~~~rv~~~~~d~~~~--~p---~~-D~v~~~ 271 (369)
++...+|||+|||+|.++..+++. .|+-+++++|. +.+++. +++.+++..+.+|...+ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999998 58899999999 777654 44557899999998762 12 22 877753
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
+++. ++...+++++++.|||||+++|.......+. .. ..+ ...++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~----~~---------------p~~-~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDV----TT---------------EPS-EVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHH----HT---------------CCC-HHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCCC----CC---------------ChH-HHHHHHHHHHHHCCCE
Confidence 3333 4567899999999999999998754321110 00 000 0122345667899999
Q ss_pred ceeEEEecC---ceeEEEE
Q 017595 352 GVNYECFVC---NFCIIEF 367 (369)
Q Consensus 352 ~~~~~~~~~---~~~vi~~ 367 (369)
+++...+.+ .+.++.+
T Consensus 211 l~e~i~L~pf~~~H~lv~~ 229 (233)
T 4df3_A 211 IKDVVHLDPFDRDHAMIYA 229 (233)
T ss_dssp EEEEEECTTTSTTEEEEEE
T ss_pred EEEEEccCCCCCceEEEEE
Confidence 999887753 3555443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-13 Score=119.29 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC---CCCCC--CEEEe-cc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE---RIPKG--DAILM-KW 272 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~v~~-~~ 272 (369)
....+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3567999999999999999976544 38899999 8887766542 579999999865 35543 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 273 I--LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 273 v--lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
. .+++..+....++++++++|||||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 33443455668899999999999999987754
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.5e-13 Score=118.48 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=80.2
Q ss_pred CcceEEEEcCChhH----HHHHHHHhCC----CCeEEEcch-hHHHHhCCCC----------------------------
Q 017595 206 QIKQLVDVGGGLGV----TLNIITSRYP----HIEGVNFDL-PHVIQNAPSY---------------------------- 248 (369)
Q Consensus 206 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 248 (369)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 8888766431
Q ss_pred ---------CCceEEeCCCCC-CCC--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 249 ---------RGVKHIGGNMFE-RIP--KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 249 ---------~rv~~~~~d~~~-~~p--~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
.+|.|..+|+.+ +++ .. |+|+|+++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 268999999998 565 33 999999999999988889999999999999999987
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=115.25 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=81.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-C------CCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-R------IPK- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~------~p~- 264 (369)
...+++.++ .....+|||||||+|.++..++++. .+++++|. +.+++.+++.-.-.++..++.+ + .+.
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 445666565 6677899999999999999999874 58999998 8888776543110022233322 1 122
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|+|++..++||++.++...++++++++| |||++++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 39999999999999888999999999999 99999987543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=106.72 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=94.7
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHH----HHhCCCCCCceEEeCCCCCC-----CCCC-CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHV----IQNAPSYRGVKHIGGNMFER-----IPKG-DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~-----~p~~-D~v~~~~ 272 (369)
..+..+|||||||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+..+ ++.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45668999999999999999999988779999999 653 34444456899999998763 2333 999886
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH----HHHHHc
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM----ALANEA 348 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~ll~~a 348 (369)
+.++ ++...+++++++.|||||++++.-...+. +.+ .+.+++. +.++++
T Consensus 134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----------------------~~~-~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARSI-----------------------DST-AEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHHH-----------------------CTT-SCHHHHHHHHHHHHHTT
T ss_pred ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCCc-----------------------ccc-CCHHHHHHHHHHHHHhh
Confidence 3222 34556799999999999999998321000 000 1222221 227888
Q ss_pred CCcceeEEEec---CceeEEEEeC
Q 017595 349 GFNGVNYECFV---CNFCIIEFIK 369 (369)
Q Consensus 349 Gf~~~~~~~~~---~~~~vi~~~~ 369 (369)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999998774 3456666553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=104.98 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=91.9
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C-CceEEeCCCCCCC---CCC
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R-GVKHIGGNMFERI---PKG 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~~---p~~ 265 (369)
++..+. .....+|||||||+|.++..+++. ..+++++|. +.+++.+++. + +++++.+|+.+.+ +..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344444 556789999999999999999988 778999999 8887766542 4 8999999998732 234
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++...+ +.. +++++.+.|+|||++++...... +..++.+++
T Consensus 124 D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQLH 167 (204)
T ss_dssp SEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHHH
Confidence 999987744 123 89999999999999998664210 144667788
Q ss_pred HHcCCcceeEE
Q 017595 346 NEAGFNGVNYE 356 (369)
Q Consensus 346 ~~aGf~~~~~~ 356 (369)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 88898877753
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-12 Score=109.23 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=77.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCCC--CEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPKG--DAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~--D~v~~~~v 273 (369)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .+++.++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999999 888776654 2689999999987 3 4443 99998865
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 274 LHNWDDE------HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 274 lh~~~d~------~~~~~L~~~~~~L~pgG~lli~e 303 (369)
....... ....+|+++.++|+|||++++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4322111 12579999999999999998854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=111.99 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=83.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC--CEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG--DAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~ 276 (369)
....+|||||||+|.++..+++..+. +++++|. +.+++.+++ .+++.++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998765 8899998 777765543 3689999999988 66543 99999999987
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 277 WD-------------DEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 277 ~~-------------d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+. .++..++|++++++|+|||++++.+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 64 3466899999999999999999988653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=115.99 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=96.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCC--CCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPK--GDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~--~D~v~~~~vlh~ 276 (369)
....+|||+|||+|.++..+++..+ +++++|+ +.+++.+++. -.+++..+|+.+.++. .|+|++....|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 3568999999999999999988766 8899998 7777665532 1289999998774433 39999865544
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
....+++++++.|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 346899999999999999999765311 25678999999999999988
Q ss_pred EecCceeEE
Q 017595 357 CFVCNFCII 365 (369)
Q Consensus 357 ~~~~~~~vi 365 (369)
...+..+++
T Consensus 243 ~~~~W~~l~ 251 (254)
T 2nxc_A 243 AEGEWVLLA 251 (254)
T ss_dssp EETTEEEEE
T ss_pred ccCCeEEEE
Confidence 777665543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=125.76 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=85.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------------CCCceEEeCCCCC-CCCC--CCE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------------YRGVKHIGGNMFE-RIPK--GDA 267 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~rv~~~~~d~~~-~~p~--~D~ 267 (369)
....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. .|+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 356899999999999999999998 5679999999 888776643 2579999999988 5543 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|++..++||++++....+++++++.|||| .++|..+.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999999999988889999999999999 77776653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=107.02 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=96.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHH----hCCCCCCceEEeCCCCCC-----CCCC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQ----NAPSYRGVKHIGGNMFER-----IPKG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p~~-D~v~~~ 271 (369)
.....+|||+|||+|.++..+++.. |+.+++++|. +.+++ .++..++++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4566899999999999999999884 6679999998 64443 344457899999999872 2333 999965
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.. .......+++++++.|+|||++++. .......... ... ..+.+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~~~---------~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------EPE---------QVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------CHH---------HHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------Chh---------hhhHHHHHHH-Hhh-ce
Confidence 44 2233445699999999999999988 2211100000 000 1125677777 777 99
Q ss_pred ceeEEEecCc---eeEEEEeC
Q 017595 352 GVNYECFVCN---FCIIEFIK 369 (369)
Q Consensus 352 ~~~~~~~~~~---~~vi~~~~ 369 (369)
+++....... +.++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9998877644 66666554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=104.58 Aligned_cols=133 Identities=11% Similarity=0.133 Sum_probs=90.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC--CCC-CC-CEEEec-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE--RIP-KG-DAILMK- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p-~~-D~v~~~- 271 (369)
.....+|||+|||+|.++..+++. ..+++++|. +.+++.+++. ++++++.+|+.. .++ .. |+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 346689999999999999999988 678999999 8888776542 689999977755 233 33 999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 272 WILHNW------DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 272 ~vlh~~------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
..+++. ..+....+|+++++.|||||++++............ .....+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------------~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDME---------------------KDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHH---------------------HHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHH---------------------HHHHHHHHHhC
Confidence 333220 225567889999999999999999875432211000 00133455556
Q ss_pred HHcCCcceeEEEec
Q 017595 346 NEAGFNGVNYECFV 359 (369)
Q Consensus 346 ~~aGf~~~~~~~~~ 359 (369)
...+|.+.+.....
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66788888876664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-12 Score=110.02 Aligned_cols=140 Identities=9% Similarity=0.081 Sum_probs=95.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHH----HHhCCCCCCceEEeCCCCCC--CC---CC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHV----IQNAPSYRGVKHIGGNMFER--IP---KG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~--~p---~~-D~v~~~ 271 (369)
+....+|||+|||+|.++..+++.+ |+.+++++|. +.+ .+.++..++++++.+|+.+. ++ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999999 553 44444447899999999872 22 23 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.. ..+....+++++++.|+|||++++.-....... ....... + .++ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~----------~~~~~~~--~-------~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDS----------TASAEAV--F-------ASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCS----------SSCHHHH--H-------HHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEccccccc----------CCCHHHH--H-------HHH-HHHHHHCCCc
Confidence 44 234456779999999999999998422100000 0000000 1 123 5888999999
Q ss_pred ceeEEEecCc---eeEEEE
Q 017595 352 GVNYECFVCN---FCIIEF 367 (369)
Q Consensus 352 ~~~~~~~~~~---~~vi~~ 367 (369)
++++...... +.++.+
T Consensus 211 ~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp EEEEEECTTTSSSEEEEEE
T ss_pred eEEEEecCCccCCcEEEEE
Confidence 9997766532 444444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=108.53 Aligned_cols=127 Identities=11% Similarity=0.128 Sum_probs=93.8
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCC--CCCCCC--CEEEecc
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMF--ERIPKG--DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~--~~~p~~--D~v~~~~ 272 (369)
.....+|||+||| +|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+. .+++.. |+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3467899999999 999999999987 678999999 8887766532 27999999964 345433 9999987
Q ss_pred ccccCChh-----------------HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc
Q 017595 273 ILHNWDDE-----------------HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE 335 (369)
Q Consensus 273 vlh~~~d~-----------------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 335 (369)
.+++.++. ....+++++.+.|+|||++++.-....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 77654332 137899999999999999998643210
Q ss_pred CCHHHHHHHHHHcCCcceeEEEec
Q 017595 336 RTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
...+++.+++++.||++..+....
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~ 207 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKV 207 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hHHHHHHHHHHHcCCceEEEEecC
Confidence 014578889999999877665443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=113.41 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=88.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC--CCC-C-C-CEEEeccccccC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE--RIP-K-G-DAILMKWILHNW 277 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~--~~p-~-~-D~v~~~~vlh~~ 277 (369)
....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++ . . |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 35689999999999999999988 568999999 888877664 4789999999976 444 3 3 9998871
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
+...+|++++++|||||+++.. +...+.+++.++++++||+.+++..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 2347899999999999999811 0112355788889999999877654
Q ss_pred e
Q 017595 358 F 358 (369)
Q Consensus 358 ~ 358 (369)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-12 Score=108.29 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=76.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCCC--CEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPKG--DAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~--D~v~~~~v 273 (369)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .+++.++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 777776643 3689999999977 3 5543 88876543
Q ss_pred cccCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 274 LHNWDDEH------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 274 lh~~~d~~------~~~~L~~~~~~L~pgG~lli~e 303 (369)
..+..... ...+|+++++.|+|||+|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32111100 2578999999999999998864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=117.12 Aligned_cols=125 Identities=10% Similarity=0.063 Sum_probs=93.8
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~- 265 (369)
.++..++ .....+|||+|||+|.++..+++. +|..+++++|. +.+++.+++ .++++++.+|+.++++..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455554 667789999999999999999998 78899999999 777765542 257999999998866543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++ ++++. ..+|+++.++|+|||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99987 34433 4789999999999999999874210 13456667
Q ss_pred HHHcCCcceeEEE
Q 017595 345 ANEAGFNGVNYEC 357 (369)
Q Consensus 345 l~~aGf~~~~~~~ 357 (369)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7788998887765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-12 Score=114.02 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=94.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC-CC--C-CC-CEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE-RI--P-KG-DAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~~--p-~~-D~v 268 (369)
....+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. + .. |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998878889999999 887776543 2689999999876 21 2 33 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 269 LMKWILHNWDDEHC--LTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 269 ~~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
++....+..++... ..++++++++|+|||++++....... .....+++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-------------------------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL-------------------------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT-------------------------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc-------------------------chHHHHHHHHHHH
Confidence 99777666543332 58999999999999999987432100 0012567888999
Q ss_pred HcCCcceeEEEe
Q 017595 347 EAGFNGVNYECF 358 (369)
Q Consensus 347 ~aGf~~~~~~~~ 358 (369)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.27 E-value=7e-12 Score=111.63 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=98.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKG 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 265 (369)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+.++..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 667789999999999999999999 88999999999 8888776542 45999999999866653
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 --DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++ +.++. ..+++++.++|+|||++++..+... ..+++.+
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 99987 34333 4789999999999999998764310 1345677
Q ss_pred HHHHcC--CcceeEEEe
Q 017595 344 LANEAG--FNGVNYECF 358 (369)
Q Consensus 344 ll~~aG--f~~~~~~~~ 358 (369)
+++++| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 888889 888877644
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=106.39 Aligned_cols=120 Identities=20% Similarity=0.183 Sum_probs=91.9
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------C-CCceEEeCCCCCCCC---CC
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------Y-RGVKHIGGNMFERIP---KG 265 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~~~p---~~ 265 (369)
+++.++ .....+|||+|||+|.++..+++.. .+++++|. +.+++.+++ . +++.++.+|+.++++ ..
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 333344 5567899999999999999999887 78999998 777776553 1 589999999876333 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALA 345 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 345 (369)
|+|++..+++++ ..+++++.+.|+|||++++..... .+..++.+++
T Consensus 102 D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~l 147 (192)
T 1l3i_A 102 DIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMECL 147 (192)
T ss_dssp EEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHHH
Confidence 999999887653 678999999999999999876421 0135678889
Q ss_pred HHcCCcce
Q 017595 346 NEAGFNGV 353 (369)
Q Consensus 346 ~~aGf~~~ 353 (369)
++.||.+.
T Consensus 148 ~~~g~~~~ 155 (192)
T 1l3i_A 148 RDLGFDVN 155 (192)
T ss_dssp HHTTCCCE
T ss_pred HHCCCceE
Confidence 99999543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=105.91 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=80.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-C-CC-CC-CEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-R-IP-KG-DAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~p-~~-D~v~~ 270 (369)
.....+|||+|||+|.++..+++.+ |+.+++++|. +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3456899999999999999999985 6789999999 8888776542 579999999876 2 33 33 99998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 271 KWILHN-------WDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 271 ~~vlh~-------~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
...+.. ...++..++++++.+.|+|||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 865511 122355679999999999999999987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=116.72 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=86.5
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---------CCceEEeCCCCCCCCCC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---------RGVKHIGGNMFERIPKG 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~~ 265 (369)
.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .+++++.+|++++++..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4556565 44458999999999999999999999999999999 8887776542 25888999999976643
Q ss_pred --CEEEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 266 --DAILMKWILHN---WDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 266 --D~v~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
|+|++...+|+ .++....++++++.+.|+|||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999885 3455566899999999999999999754
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-12 Score=111.65 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=92.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CC----CCC-CEEEec
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RI----PKG-DAILMK 271 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~----p~~-D~v~~~ 271 (369)
....+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +. +.. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4668999999999999999999899999999999 777776653 2579999999876 43 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.+ .+...+++.++++|+|||++++....... . ..+++.+.+++.||+
T Consensus 149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~-------~--------------------~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV------ARLSVLSELCLPLVKKNGLFVALKAASAE-------E--------------------ELNAGKKAITTLGGE 195 (240)
T ss_dssp CC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH-------H--------------------HHHHHHHHHHHTTEE
T ss_pred cc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch-------H--------------------HHHHHHHHHHHcCCe
Confidence 63 23568999999999999999986421100 0 124577788999999
Q ss_pred ceeEEEe
Q 017595 352 GVNYECF 358 (369)
Q Consensus 352 ~~~~~~~ 358 (369)
++++...
T Consensus 196 ~~~~~~~ 202 (240)
T 1xdz_A 196 LENIHSF 202 (240)
T ss_dssp EEEEEEE
T ss_pred EeEEEEE
Confidence 8887543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-12 Score=103.86 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=97.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C-CceEEeCCCCCC-CCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R-GVKHIGGNMFER-IPKG 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~-~p~~ 265 (369)
+.+...++ ...+|||+|||+|.++..++...|+++++++|. +.+++.++.. . ++++ .|.... .+..
T Consensus 41 ~~~~~~l~---~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~ 115 (200)
T 3fzg_A 41 TYVFGNIK---HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGT 115 (200)
T ss_dssp HHHHHHSC---CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSE
T ss_pred HHHHhhcC---CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCC
Confidence 34444443 578999999999999999999999999999999 8888877642 2 4555 666653 3333
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++..+||++ ++....+.++++.|+|||.+|-.+.-.=..+. .+-.......|.+.
T Consensus 116 ~DvVLa~k~LHlL--~~~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~ 174 (200)
T 3fzg_A 116 YDVVFLLKMLPVL--KQQDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESF 174 (200)
T ss_dssp EEEEEEETCHHHH--HHTTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHH
T ss_pred cChhhHhhHHHhh--hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHh
Confidence 999999999999 44556677999999999988887732111110 01122335566666
Q ss_pred HHHcCCcceeEEEecCc
Q 017595 345 ANEAGFNGVNYECFVCN 361 (369)
Q Consensus 345 l~~aGf~~~~~~~~~~~ 361 (369)
+ ...+.+++....++-
T Consensus 175 ~-~~~~~~~~~~~~~nE 190 (200)
T 3fzg_A 175 T-KGWIKILDSKVIGNE 190 (200)
T ss_dssp T-TTTSCEEEEEEETTE
T ss_pred c-cCcceeeeeeeeCce
Confidence 6 556666666555543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-11 Score=103.40 Aligned_cols=141 Identities=9% Similarity=0.107 Sum_probs=94.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHH----HHhCCCCCCceEEeCCCCCCC-----CCC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHV----IQNAPSYRGVKHIGGNMFERI-----PKG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~-----p~~-D~v~~~ 271 (369)
+....+|||+|||+|.++..+++. .|+.+++++|. +.+ ++.+++..++.++.+|+..+. ... |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567789999999999999999987 46889999999 654 344444578999999997631 223 999877
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
... + .....+++.+++.|||||+|++.-.....+ . +..-.. ..++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d--------------~-----t~~~~e-~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSID--------------V-----TKDPKE-IYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcc--------------c-----CCCHHH-HHHHHHHHHHHCCCE
Confidence 543 2 333345566777999999999874221100 0 001111 123455577889999
Q ss_pred ceeEEEecC---ceeEEEEe
Q 017595 352 GVNYECFVC---NFCIIEFI 368 (369)
Q Consensus 352 ~~~~~~~~~---~~~vi~~~ 368 (369)
+++...+.+ .+.++.++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEE
Confidence 999988753 36655554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-12 Score=116.71 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=94.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC----CCC----C-CCEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE----RIP----K-GDAI 268 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~----~~p----~-~D~v 268 (369)
...+|||+|||+|.++..++.++|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++ . .|+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999988899999999 8888766542 469999999543 444 2 3999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCcc
Q 017595 269 LMKWILHNWDD-------------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRE 335 (369)
Q Consensus 269 ~~~~vlh~~~d-------------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 335 (369)
++...+|+... +....++.+++++|||||.+.+++.+... ...............+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~---------~~~~l~~~g~~~~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHD---------SLQLKKRLRWYSCMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHH---------HHHHGGGBSCEEEEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHH---------HHhcccceEEEEECCCCh
Confidence 99877665431 11235678899999999998887653211 000000000000112334
Q ss_pred CCHHHHHHHHHHcCCcceeEEEec
Q 017595 336 RTTQEFMALANEAGFNGVNYECFV 359 (369)
Q Consensus 336 ~t~~e~~~ll~~aGf~~~~~~~~~ 359 (369)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456889999999999998887664
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.1e-12 Score=108.31 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=74.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-CC-CEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-KG-DAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~-D~v~~~~vlh~~ 277 (369)
..+|||||||+|.++..++..+|+.+++++|. +.+++.++. .++++++.+|+.+..+ .. |+|++..+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence 57999999999999999999999999999999 777776653 2459999999988433 33 99987542 2
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
....+++++++.|+|||++++..
T Consensus 143 ---~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 ---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 24589999999999999999864
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-11 Score=106.67 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=93.3
Q ss_pred cC-CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-C--CCC-C-CEEE
Q 017595 204 FE-QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-R--IPK-G-DAIL 269 (369)
Q Consensus 204 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~--~p~-~-D~v~ 269 (369)
.. ...+|||+|||+|.++..++++.+. +++++|+ +.+++.+++. ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999776 9999999 8887766542 479999999987 2 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhc
Q 017595 270 MKWILHNW------------------DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFS 331 (369)
Q Consensus 270 ~~~vlh~~------------------~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 331 (369)
+...++.. .......+++.+.++|+|||+++++... .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~----------------------- 179 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP--E----------------------- 179 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT--T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH--H-----------------------
Confidence 97554322 1133567999999999999999985321 0
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 332 GGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 332 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
...++.+++++.||...++.+.
T Consensus 180 -----~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -----RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -----THHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHHHCCCceEEEEEe
Confidence 1446777888899998887665
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=110.79 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=78.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCCCEEEeccccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKGDAILMKWILH 275 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~v~~~~vlh 275 (369)
+....+|||||||+|.++..++.+.++.+++++|+ +.+++.|++. ++++++.+|+.+ +-...|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 66789999999999988777777778999999999 8888887642 689999999987 4222399987654
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. ++..++++++++.|||||+|++.+.
T Consensus 198 -~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 4456899999999999999998763
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=109.08 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=77.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~ 281 (369)
...+|||||||+|.++..+++. ..+++++|. +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 468999999 7887766543211388899987 66543 999999877766433
Q ss_pred HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
...+|++++++|+|||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 679999999999999999987754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-11 Score=102.00 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=80.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC--CCeEEEcchhHHHHhCCCCCCceEEeCCCCC-C---------
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP--HIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-R--------- 261 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------- 261 (369)
+.++.+.+..+....+|||||||+|.++..+++++| +.+++++|+..+ ...++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 445555555345668999999999999999999998 689999999442 224689999999987 4
Q ss_pred ----------------CCC-C-CEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCCEEEEEe
Q 017595 262 ----------------IPK-G-DAILMKWILHNWD----DEH-----CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 262 ----------------~p~-~-D~v~~~~vlh~~~----d~~-----~~~~L~~~~~~L~pgG~lli~e 303 (369)
++. . |+|++...+|+.. +.. ..++|++++++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877532 111 1358999999999999998754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-12 Score=117.45 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=88.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCCCC-CE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIPKG-DA 267 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~ 267 (369)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. ..++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34555554 33457999999999999999999999999999999 7777766542 34678999998744444 99
Q ss_pred EEecccccc---CChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWILHN---WDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~vlh~---~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|++..++|+ .+.+...++|++++++|+|||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999986 23466789999999999999999998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.8e-12 Score=108.78 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=76.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC----CCCC--CEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER----IPKG--DAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----~p~~--D~v~~~~ 272 (369)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999999 777766543 36799999998662 4543 8888765
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCCEEEEEec
Q 017595 273 ILHNWDDEHC------LTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 vlh~~~d~~~------~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.......... ..+++.++++|||||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432222221 2599999999999999988653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=110.72 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=80.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------------CCceEEeCCCCC-C----CC--C
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------------RGVKHIGGNMFE-R----IP--K 264 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~rv~~~~~d~~~-~----~p--~ 264 (369)
...+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .++.++.+|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5679999999999999998874 5778999999 7777765432 378999999987 4 42 2
Q ss_pred -C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 -G-DAILMKWILHNW--DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 -~-D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. |+|++..++|+. +.++...+|++++++|+|||++++..+
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 3 999999999987 446678999999999999999998766
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=109.77 Aligned_cols=127 Identities=12% Similarity=0.132 Sum_probs=96.9
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 264 (369)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666565 667789999999999999999999 77889999998 777776543 3689999999988 4664
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH
Q 017595 265 G--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM 342 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 342 (369)
. |+|++ ++++. ..+|+++.++|+|||++++..+... ...++.
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 99987 34333 4789999999999999999875310 023455
Q ss_pred HHHHHcCCcceeEEEe
Q 017595 343 ALANEAGFNGVNYECF 358 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~ 358 (369)
+.++++||..+++...
T Consensus 209 ~~l~~~gf~~~~~~~~ 224 (258)
T 2pwy_A 209 RAAEAHPFRLERVLEV 224 (258)
T ss_dssp HHHTTTTEEEEEEEEE
T ss_pred HHHHHCCCceEEEEEe
Confidence 6677889987776553
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=107.45 Aligned_cols=150 Identities=10% Similarity=0.114 Sum_probs=97.2
Q ss_pred HHHHHHhccCcC-CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh-CCCCCCceEEe-CCCCC----CCCC-
Q 017595 194 MNRILDSYNGFE-QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN-APSYRGVKHIG-GNMFE----RIPK- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~rv~~~~-~d~~~----~~p~- 264 (369)
...+++.+. ++ ...+|||||||+|.++..+++. +..+++++|. +.+++. .+..+++.... .|+.. .+|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 445666665 44 4579999999999999998887 4458999999 777665 34445665443 34422 2343
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe-ccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID-RMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM 342 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 342 (369)
.|++++..++|++ ..+|.+++++|+|||++++.- +-.+..+ . .........|... +.++.+++.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~-~-~~~~~G~vrd~~~-------~~~~~~~v~ 216 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR-E-QIGKNGIVRESSI-------HEKVLETVT 216 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG-G-GCC-CCCCCCHHH-------HHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh-h-hcCCCCccCCHHH-------HHHHHHHHH
Confidence 3999998888865 468999999999999999862 1111100 0 0000000001111 113578899
Q ss_pred HHHHHcCCcceeEEEec
Q 017595 343 ALANEAGFNGVNYECFV 359 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~~~ 359 (369)
++++++||++..+...+
T Consensus 217 ~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHTTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEECC
Confidence 99999999988876643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=111.97 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=75.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----C--------CceEEeCCCCC---------CCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----R--------GVKHIGGNMFE---------RIP 263 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------rv~~~~~d~~~---------~~p 263 (369)
...+|||||||+|..+..++.. ...+++++|+ +.+++.|+++ . ++++...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3579999999999876666554 3458999999 8888877653 1 25677887732 233
Q ss_pred CC--CEEEeccccccC-ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 264 KG--DAILMKWILHNW-DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 264 ~~--D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+ |+|++..++|+. ++++...+|++++++|||||++++..+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 33 999999999974 445567999999999999999988766
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=102.26 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=100.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC---CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK---GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~---~D~v~~~~vl 274 (369)
+..+|+|||||+|.++..++..+|..+++++|. +..++.|++. ++|+++.+|.+++++. .|+|+...+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~- 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM- 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE-
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC-
Confidence 557999999999999999999999999999999 8887776542 5799999999986652 498887765
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
..+....+|..+.+.|+|+|++++.-.. ....++++|.+.||.+++
T Consensus 94 ---Gg~~i~~Il~~~~~~L~~~~~lVlq~~~-------------------------------~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 94 ---GGRLIARILEEGLGKLANVERLILQPNN-------------------------------REDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp ---CHHHHHHHHHHTGGGCTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEEE
T ss_pred ---ChHHHHHHHHHHHHHhCCCCEEEEECCC-------------------------------CHHHHHHHHHHCCCEEEE
Confidence 3345678999999999999998874321 145678889999999887
Q ss_pred EEEe---cCceeEEEEe
Q 017595 355 YECF---VCNFCIIEFI 368 (369)
Q Consensus 355 ~~~~---~~~~~vi~~~ 368 (369)
-.-+ .-.+.||.+.
T Consensus 140 e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 140 ESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEE
Confidence 6432 3456677664
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=105.54 Aligned_cols=151 Identities=12% Similarity=0.108 Sum_probs=88.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeC-CCC----CCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGG-NMF----ERIPK-- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~-d~~----~~~p~-- 264 (369)
....++.++......+|||||||+|.++..+++.. ..+++++|+ +.+++.+.+ .+++..... ++. .+++.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence 34555556522345799999999999999999883 348999999 777665432 233332221 111 11222
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcch-HHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT-AAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
.|.+.+..++.++ ..+|++++++|||||++++.- .+...... .........+... ...+.++|.+
T Consensus 104 ~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~-------~~~~~~~l~~ 169 (232)
T 3opn_A 104 PSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPKV-------HQMTIEKVLK 169 (232)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHH-------HHHHHHHHHH
T ss_pred CCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcch-------hHHHHHHHHH
Confidence 2555555555544 468999999999999999853 11000000 0000000001111 1136889999
Q ss_pred HHHHcCCcceeEEEec
Q 017595 344 LANEAGFNGVNYECFV 359 (369)
Q Consensus 344 ll~~aGf~~~~~~~~~ 359 (369)
+++++||+++.+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999998886543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-12 Score=110.95 Aligned_cols=122 Identities=11% Similarity=0.042 Sum_probs=93.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCC----C-CCEEEec
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIP----K-GDAILMK 271 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p----~-~D~v~~~ 271 (369)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+|+++.+|+.+ +.. . .|+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999999999999999999999999 777776654 2569999999876 331 2 3999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.+- +...+++.+.+.|+|||++++....... . ...++...+++.||+
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~-------~--------------------e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE-------E--------------------ELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH-------H--------------------HHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH-------H--------------------HHHHHHHHHHHcCCe
Confidence 542 2357899999999999999986642110 0 022466677888999
Q ss_pred ceeEEEec
Q 017595 352 GVNYECFV 359 (369)
Q Consensus 352 ~~~~~~~~ 359 (369)
+.++.+..
T Consensus 206 ~~~~~~~~ 213 (249)
T 3g89_A 206 LGEVLALQ 213 (249)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEee
Confidence 98887653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=103.08 Aligned_cols=109 Identities=8% Similarity=0.065 Sum_probs=83.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCC-CC---CCC--CEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFE-RI---PKG--DAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~---p~~--D~v~~~~vl 274 (369)
.....+|||||||. +.+|. +.+++.+++. .+++++.+|+.+ +. +.. |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 55678999999996 23787 7777766543 369999999987 44 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 275 HNW-DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 275 h~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
||+ ++. .++|++++++|||||++++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 554 6899999999999999999765432110 01223678999999999999
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=100.08 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=83.7
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-C--------CCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-R--------IPK 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------~p~ 264 (369)
..+++.+.......+|||+|||+|.++..+++.+ |+.+++++|...+++ .++++++.+|+.+ + ++.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3455555434566799999999999999999994 778999999944332 2789999999988 4 553
Q ss_pred -C-CEEEeccccccCChhH---------HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 -G-DAILMKWILHNWDDEH---------CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 -~-D~v~~~~vlh~~~d~~---------~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
. |+|++..++|+.+... ...+++++.+.|+|||++++....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3 9999999988765431 158999999999999999987764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=101.60 Aligned_cols=128 Identities=11% Similarity=0.024 Sum_probs=101.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC---CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK---GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~---~D~v~~~~vl 274 (369)
+..+|+|||||+|.++..+++..|..+++++|. +..++.|++. ++|+++.+|.++.++. .|+|+...+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 568999999999999999999999889999999 8888776642 5799999999985442 4998877664
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
.+....+|....+.|+++|+|++.-.. ..+.+++++.+.||.+++
T Consensus 101 ----g~lI~~IL~~~~~~l~~~~~lIlqp~~-------------------------------~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 101 ----GRLIADILNNDIDKLQHVKTLVLQPNN-------------------------------REDDLRKWLAANDFEIVA 145 (230)
T ss_dssp ----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEEE
T ss_pred ----hHHHHHHHHHHHHHhCcCCEEEEECCC-------------------------------ChHHHHHHHHHCCCEEEE
Confidence 355778999999999999998875421 155788899999999887
Q ss_pred EEEe---cCceeEEEEe
Q 017595 355 YECF---VCNFCIIEFI 368 (369)
Q Consensus 355 ~~~~---~~~~~vi~~~ 368 (369)
-.-+ .-.+.||.+.
T Consensus 146 E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 146 EDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEC--CEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEE
Confidence 6543 3557777764
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=100.95 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=91.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC--CC
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK--GD 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~--~D 266 (369)
.+++.++ .....+|||+|||+|.++..+++ +..+++++|. +.+++.+++. ++++++.+|+.++++. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 55668999999999999999998 7889999998 7777766542 5899999999875543 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+|++..+ .....+++++++. |||++++...... +..++.++++
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999988 2345789999888 9999998774210 1345778889
Q ss_pred HcCCcceeE
Q 017595 347 EAGFNGVNY 355 (369)
Q Consensus 347 ~aGf~~~~~ 355 (369)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-11 Score=112.33 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=85.2
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC-------CC--------CCCceEEeCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA-------PS--------YRGVKHIGGNM 258 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~rv~~~~~d~ 258 (369)
..+++.+. .....+|||||||+|.++..+++.++..+++++|+ +.+++.| +. ..+++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 34555555 66778999999999999999999888778999998 6665554 21 35899998755
Q ss_pred C-CC--C----CCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 259 F-ER--I----PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 259 ~-~~--~----p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
+ .+ + ...|+|++..+++ . ++...+|+++.+.|||||+|++.+.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 4 32 2 1249999887773 2 556788999999999999999998876654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=105.69 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=84.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCCC---C-------C------------
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPSY---R-------G------------ 250 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------r------------ 250 (369)
.+++.++ .....+|||+|||+|.++..+++. ++..+++++|+ +.+++.++.. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 4444443 235689999999999999999998 77889999999 8887776531 1 2
Q ss_pred -------------ce-------------EEeCCCCCCC------CC--CCEEEeccccccCCh-------hHHHHHHHHH
Q 017595 251 -------------VK-------------HIGGNMFERI------PK--GDAILMKWILHNWDD-------EHCLTLLKNC 289 (369)
Q Consensus 251 -------------v~-------------~~~~d~~~~~------p~--~D~v~~~~vlh~~~d-------~~~~~~L~~~ 289 (369)
++ ++.+|+++.. +. .|+|++...+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998854 33 399999877766543 5567999999
Q ss_pred HHhCCCCCEEEEEecc
Q 017595 290 YEAIPENGKIIIIDRM 305 (369)
Q Consensus 290 ~~~L~pgG~lli~e~~ 305 (369)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999986554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=117.36 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=86.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~ 265 (369)
.+.+++.+. .....+|||||||+|.++..+++ .+..+++++|.+.+++.+++ .++|+++.+|+.+ +++..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445666554 44568999999999999998877 57789999999546665543 1689999999998 66655
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
|+|++..++|++.++.....+.++++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999898988878888889999999999999885
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-11 Score=105.00 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=73.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------------CCCCceEEeCCCCC--C--CCCC--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------------SYRGVKHIGGNMFE--R--IPKG-- 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~--~p~~-- 265 (369)
....+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+|.++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3567999999999999999999999999999999 77766432 24689999999986 3 4444
Q ss_pred CEEEeccccccCChh--H----HHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 DAILMKWILHNWDDE--H----CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 D~v~~~~vlh~~~d~--~----~~~~L~~~~~~L~pgG~lli~e 303 (369)
|.|++...-.+.... . ...+|++++++|+|||+|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 888764432211100 0 1379999999999999998864
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-11 Score=113.36 Aligned_cols=105 Identities=18% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC------C-CCceEEeCCCCC-CCCCC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS------Y-RGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~rv~~~~~d~~~-~~p~~-D 266 (369)
.+++.+. .....+|||||||+|.++..+++. +..+++++|...+++.+++ . ++++++.+|+.+ +.+.. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4445444 445689999999999999998876 5568999998445555432 1 689999999988 66654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+|++..+++|+..+.....+.++++.|+|||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999999988777788899999999999999854
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-11 Score=105.89 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=77.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC--------CCCCE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI--------PKGDA 267 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~--------p~~D~ 267 (369)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+.+ ...|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 3568999999999999999999998 789999999 877776543 247999999987621 12499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|++.... +....+++++.+.|+|||++++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9876552 445689999999999999888776654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-11 Score=109.51 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=81.9
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK- 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~- 264 (369)
..++..++ +....+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+.++.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 45555555 667789999999999999999999 78899999998 8777766542 5799999999876554
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+|++ +.++ ...+|+++.++|+|||++++...
T Consensus 181 ~~D~V~~-----~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 399987 2333 34789999999999999999874
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-11 Score=102.81 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=81.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC-C--
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP-K-- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-- 264 (369)
.+++.+. .....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++.++.+|+..+++ .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4444444 5567899999999999999999987 6689999998 7777766542 579999999876554 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|+|++..++|+++ +++.+.|+|||++++....
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECC
Confidence 39999999999986 3678999999999987653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-11 Score=105.87 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=91.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC-CCCC-CEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER-IPKG-DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~-~p~~-D~v~~~~vl 274 (369)
++..+|||+|||+|.++..+++..+. +++++|. +.+++.+++. ++++++.+|+++. .+.. |+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 35689999999999999999999877 8999999 8887766531 4699999999983 3333 99988543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
.....+++++.++|+|||++++.+...... ......+++.+.++++||++..
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 223578999999999999999988753110 0112466788899999998766
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=98.68 Aligned_cols=99 Identities=11% Similarity=-0.062 Sum_probs=79.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C--CC-C-CCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R--IP-K-GDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p-~-~D~v~~~~v 273 (369)
...+|||+|||+|.++..++.. +..+++++|. +.+++.+++. ++++++.+|+.+ . ++ . .|+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4579999999999999988774 4568999999 8888776542 589999999977 2 32 3 399999888
Q ss_pred cccCChhHHHHHHHHHHH--hCCCCCEEEEEeccC
Q 017595 274 LHNWDDEHCLTLLKNCYE--AIPENGKIIIIDRMP 306 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~~ 306 (369)
+|+. .++..++++.+.+ .|+|||++++.....
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 6653 4567899999999 999999999877654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.5e-11 Score=101.69 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=79.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-C--C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-K--G 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~--~ 265 (369)
.+++.+. .....+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 4444454 567789999999999999999998 578899998 777776653 2579999999988432 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+|++..++|++++ .+.+.|+|||++++.-..
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999875 478899999999987654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-11 Score=104.65 Aligned_cols=98 Identities=9% Similarity=0.166 Sum_probs=78.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC---CCC-----C-CCE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE---RIP-----K-GDA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p-----~-~D~ 267 (369)
+..+|||||||+|..+..+++..+ +.+++++|. +.+++.+++. ++++++.+|+.+ .++ . .|+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 568999999999999999999865 789999999 8888776642 479999999754 232 2 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|++....+++ ....++++.+ +.|+|||+|++.+...
T Consensus 138 V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9999888877 4445778888 9999999988766653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=108.31 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=77.2
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC-------CCceEEeCCCCC-CCCC-C-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY-------RGVKHIGGNMFE-RIPK-G- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~- 265 (369)
.+.+.+. .....+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3334333 456689999999999999999887 44689999984466665431 689999999988 6663 3
Q ss_pred CEEEeccccccC-ChhHHHHHHHHHHHhCCCCCEEE
Q 017595 266 DAILMKWILHNW-DDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 266 D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
|+|++..+.+.+ .......+|+.+.+.|||||+++
T Consensus 133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999987743322 12456689999999999999987
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=103.77 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=78.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC---CCC---CCCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE---RIP---KGDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p---~~D~v~ 269 (369)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+ ..|+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 3568999999999999999999998 889999999 8777766542 589999999865 222 239998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+... .+....+|+++.++|||||+|++.+...
T Consensus 142 ~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 142 IDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp ECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred ECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 7543 3456689999999999999888876654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=99.68 Aligned_cols=128 Identities=12% Similarity=0.076 Sum_probs=100.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCC-C--CCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIP-K--GDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~--~D~v~~~~vl 274 (369)
+..+|||||||+|.++..+++..|..+++++|. +..++.|++. ++|+++.+|.++.++ . .|+|++..+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 568999999999999999999999889999999 8887776542 579999999998544 2 4998876653
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCccee
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVN 354 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 354 (369)
.+-...+|....+.|+++++|++.-.. ..+.+++++.+.||.+++
T Consensus 101 ----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 101 ----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLITS 145 (244)
T ss_dssp ----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEEE
T ss_pred ----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEEE
Confidence 355778999999999999998876421 145688899999999866
Q ss_pred EEE---ecCceeEEEEe
Q 017595 355 YEC---FVCNFCIIEFI 368 (369)
Q Consensus 355 ~~~---~~~~~~vi~~~ 368 (369)
-.- ..-++-||.+.
T Consensus 146 E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 146 EAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEECCEEEEEEEEE
Confidence 543 23456676654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-11 Score=105.16 Aligned_cols=94 Identities=19% Similarity=0.366 Sum_probs=72.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC--------------CCCCceEEeCCCCCC----CCCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP--------------SYRGVKHIGGNMFER----IPKG 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~rv~~~~~d~~~~----~p~~ 265 (369)
+...+|||||||+|.++..+++.+|+.+++++|. +.+++.++ ..+++.++.+|+++. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4568999999999999999999999999999998 77766442 236899999999873 3333
Q ss_pred --CEEEeccccccCChhHH-----------HHHHHHHHHhCCCCCEEEEEe
Q 017595 266 --DAILMKWILHNWDDEHC-----------LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~-----------~~~L~~~~~~L~pgG~lli~e 303 (369)
|.|++. ++++.. ..+++++.++|+|||+|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 655532 333321 479999999999999999853
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-11 Score=110.96 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=79.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCC------hhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGG------LGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIP- 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p- 263 (369)
++.+++.+. .+..+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++++++.+|+.+ +++
T Consensus 206 Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 206 YDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp HHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHH
T ss_pred HHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhh
Confidence 344454443 356899999999 66666666665 69999999999 6653 235799999999988 544
Q ss_pred ------CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 264 ------KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 264 ------~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.. |+|++.. .|++ ++..+.|++++++|||||++++.|..
T Consensus 281 ~l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 281 RIARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 23 9998864 4665 56678999999999999999998876
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=100.93 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=76.0
Q ss_pred cceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCCC--C---CC--CCEEEeccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFER--I---PK--GDAILMKWI 273 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--~---p~--~D~v~~~~v 273 (369)
..+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|+.+. + +. .|+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 479999999999999999997 78899999999 888777654 36899999999873 2 22 399887654
Q ss_pred cccCChhHHHHHHHHHHH-hCCCCCEEEEEec
Q 017595 274 LHNWDDEHCLTLLKNCYE-AIPENGKIIIIDR 304 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~-~L~pgG~lli~e~ 304 (369)
|. +...+|+++.+ .|||||+|++.+.
T Consensus 162 -~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 -HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp -CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred -hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 42 35679999997 9999999998775
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-11 Score=105.70 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=78.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C-----CC-CCE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I-----PK-GDA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~-----p~-~D~ 267 (369)
+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++|+++.+|+.+. . +. .|+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999999999986 789999999 7766655432 5899999999762 2 23 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
|++... ......+|+++.+.|+|||+|++.+.....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 987654 345567999999999999999987776543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.2e-11 Score=104.08 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=78.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCC----CC-CEEEec
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIP----KG-DAILMK 271 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p----~~-D~v~~~ 271 (369)
.+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3568999999999999999999889999999999 8887766542 489999999987433 33 999865
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.. .+....+++++.+.|+|||+|++.+...
T Consensus 150 ~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AA-----KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TT-----SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred Cc-----HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 43 2445689999999999999998766544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=108.53 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=75.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCC-C-CEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPK-G-DAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~-D~v~~~~vl 274 (369)
....+|||||||+|.++..++++ +..+++++|..++++.+++ .++++++.+|+.+ ++|. . |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 35689999999999999999987 5668999998556665543 2569999999998 6764 3 999987765
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 275 HNW-DDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 275 h~~-~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+++ ..+....+++.+.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 544 224566899999999999999873
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=106.35 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=78.2
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCC-C-CCEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIP-K-GDAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p-~-~D~v~~~~vl 274 (369)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+ . .|+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 35999999999999999999999999999999 888887654 2689999999876 333 2 3999986544
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEH--CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~--~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+...... ...+++.++++|+|||++++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322222 25899999999999999988765
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-11 Score=103.98 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=77.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---CC-----C-CCE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---IP-----K-GDA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~-~D~ 267 (369)
...+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ . .|+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 467999999999999999999988 789999999 7777766532 5799999998652 11 3 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
|++... .+....+++++.+.|+|||+|++.+...+
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 986543 34567899999999999999998777643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-10 Score=95.18 Aligned_cols=108 Identities=14% Similarity=0.246 Sum_probs=79.1
Q ss_pred hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCC--------
Q 017595 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERI-------- 262 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~-------- 262 (369)
.+.+.++.+.+..+....+|||+|||+|.++..++++ ..+++++|+... ...++++++.+|+.+..
T Consensus 10 ~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~ 83 (191)
T 3dou_A 10 AFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRA 83 (191)
T ss_dssp HHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHH
Confidence 3445677777764567789999999999999999988 678999998432 23468999999998731
Q ss_pred ------CCCCEEEeccccccCC---------hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 263 ------PKGDAILMKWILHNWD---------DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 263 ------p~~D~v~~~~vlh~~~---------d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+..|+|++........ -+.+..+|+.+.+.|||||++++...
T Consensus 84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2239999864322110 12245789999999999999987654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=102.35 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=81.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC--
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK-- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~-- 264 (369)
...+++.++ .....+|||||||+|.++..+++..+ .+++++|. +.+++.+++ .++++++.+|+..+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 345555554 56678999999999999999999988 78999998 777776654 25699999998555543
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|+|++..+++++++ ++.+.|+|||++++.-..
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 399999999998854 578899999999987653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=101.00 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=79.6
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----CCceEEeCCCCCCCC--CC-C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFERIP--KG-D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~~~p--~~-D 266 (369)
..+++.+. .....+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ .. |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555554 5567899999999999999999987 68899998 7777766532 379999999987433 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+|++..++|++++ ++.+.|+|||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999999863 478899999999998654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-10 Score=102.59 Aligned_cols=100 Identities=12% Similarity=0.230 Sum_probs=76.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------C---CCceEEeCCCCCC--------CCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------Y---RGVKHIGGNMFER--------IPK 264 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~---~rv~~~~~d~~~~--------~p~ 264 (369)
.....+|||+|||+|.++..++.++|+.+++++|+ +.+++.+++ . ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45668999999999999999999999999999999 777765432 1 3699999999874 333
Q ss_pred -C-CEEEecccccc----------------CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 -G-DAILMKWILHN----------------WDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 -~-D~v~~~~vlh~----------------~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
. |+|++.-.++. ........+++.+.+.|+|||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99999743322 222335789999999999999998854
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-10 Score=95.74 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=77.0
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC---------CeEEEcchhHHHHhCCCCCCceEE-eCCCCC-C---
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH---------IEGVNFDLPHVIQNAPSYRGVKHI-GGNMFE-R--- 261 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~rv~~~-~~d~~~-~--- 261 (369)
++.+.+..+....+|||||||+|.++..++++++. .+++++|+... ...++++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44444543456789999999999999999999765 79999998442 123678999 999876 2
Q ss_pred -----CCC-C-CEEEecccccc----CChhH-----HHHHHHHHHHhCCCCCEEEEEec
Q 017595 262 -----IPK-G-DAILMKWILHN----WDDEH-----CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 262 -----~p~-~-D~v~~~~vlh~----~~d~~-----~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
++. . |+|++...+|. ..+.. ...++++++++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 232 3 99998655443 12211 14789999999999999998765
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=108.85 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=78.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vl 274 (369)
.....+|||||||+|.++..++++. ..+++++|...+++.+++ .++++++.+|+.+ ++++. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999884 348888888655554443 2569999999988 66644 999997777
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 275 HNWDD-EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 275 h~~~d-~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|++.. .....+++.+++.|+|||++++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 76543 34667999999999999999876553
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=100.14 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=99.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCC-C-CCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIP-K-GDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p-~-~D~v~~~~vlh~ 276 (369)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++.. .+.++...|+....| . +|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3578999999999999999999999999999999 8888876542 457899999988444 3 399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
+.++.....+ ++..+|+|+|.++..+.-.=..+.+ . |. ....+.|.+++.+.|..+.+.
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~--------g----m~-------~~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK--------G----MF-------QNYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------C----HH-------HHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc--------c----hh-------hHHHHHHHHHHHhcCCceeee
Confidence 9777666677 8999999999888777611111110 1 11 123678999999999854443
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-10 Score=105.83 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=78.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-----------------CCCceEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-----------------YRGVKHI 254 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~~ 254 (369)
...++..+. .....+|||+|||+|.++..+++. .|+.+++++|. +.+++.+++ .++++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 334555554 566789999999999999999998 58889999999 777766543 2589999
Q ss_pred eCCCCCC---CCC--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 255 GGNMFER---IPK--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 255 ~~d~~~~---~p~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.+|+.+. ++. .|+|++... . + ..+++++.+.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~-~----~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML-N----P--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS-S----T--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECCC-C----H--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999873 343 299987432 1 1 23789999999999999987763
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=101.96 Aligned_cols=96 Identities=9% Similarity=0.142 Sum_probs=78.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C--CCC-CEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I--PKG-DAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~--p~~-D~v~~~ 271 (369)
...+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. +++.++.+|+.+. . +.. |+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 467999999999999999999999999999999 8877766542 5799999999772 1 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
...+ ....+|+++.+.|+|||++++.+...
T Consensus 134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 7654 34688999999999999999876544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=105.26 Aligned_cols=101 Identities=14% Similarity=0.282 Sum_probs=80.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC--C-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP--K- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~- 264 (369)
.+++.+. .....+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ .++++++.+|+.+..+ .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4445454 55678999999999999999999987 478999998 777776653 2569999999987332 2
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.|+|++..++|+++ +++.+.|||||++++....
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 39999999999986 4678899999999997543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-10 Score=100.96 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCCC--CEEEeccccccCCh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDD 279 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d 279 (369)
....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .+++.++.+|+.+ +++.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3567999999999999999999988889999999 887777654 3678999999987 55543 999986653
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..+++++++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24889999999999999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-10 Score=105.61 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=80.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCC-CC-CC-CEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFER-IP-KG-DAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~-~p-~~-D~v~~~~vlh~ 276 (369)
...+|||+|||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+. .+ .. |+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4579999999999999999988 468999998 7777766542 2589999999983 43 23 99999999997
Q ss_pred ---CChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 277 ---WDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 277 ---~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
...+....+++++.+.|+|||+++|+..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3347788999999999999999999754
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=96.35 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=76.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---CCC-CCEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---IPK-GDAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~-~D~v~~~ 271 (369)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+. .|+|++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~ 107 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 107 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence 345679999999999999999987 6679999999 8887766532 4799999998762 223 3999998
Q ss_pred cccccCChhHHHHHHHHHH--HhCCCCCEEEEEeccCC
Q 017595 272 WILHNWDDEHCLTLLKNCY--EAIPENGKIIIIDRMPM 307 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~~~ 307 (369)
..++. .....+++.+. ++|+|||++++......
T Consensus 108 ~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 108 PPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 77643 33456677776 99999999998776543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-10 Score=101.11 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=74.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCC-CC---CEEEec--
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIP-KG---DAILMK-- 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~~---D~v~~~-- 271 (369)
...+|||+|||+|.++..++.. |+.+++++|+ +.+++.+++. ++++++.+|++++++ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 8888776542 369999999998543 45 999986
Q ss_pred ----------cccccCCh------hHHHHHHHHHH-HhCCCCCEEEE
Q 017595 272 ----------WILHNWDD------EHCLTLLKNCY-EAIPENGKIII 301 (369)
Q Consensus 272 ----------~vlh~~~d------~~~~~~L~~~~-~~L~pgG~lli 301 (369)
.+. |.|. ++...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 233 2222 11237899999 99999999886
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-10 Score=103.59 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=73.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCC-CC-CEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIP-KG-DAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~-D~v~~~~vlh 275 (369)
...+|||||||+|.++..+++. +..+++++|...+++.+++ .++++++.+|+.+ ++| +. |+|++..+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 4579999999999999998876 4458899998546665443 2579999999988 666 33 9999886655
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCCEEEE
Q 017595 276 NWD-DEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 276 ~~~-d~~~~~~L~~~~~~L~pgG~lli 301 (369)
++. ......+++.+.+.|+|||+++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 442 24456889999999999999873
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=98.66 Aligned_cols=104 Identities=10% Similarity=0.178 Sum_probs=81.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC---------CCCceEEeCCCCC-C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS---------YRGVKHIGGNMFE-R 261 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~ 261 (369)
...++..++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345566565 667789999999999999999986 57889999999 777765543 2589999999987 4
Q ss_pred CCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 262 IPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 262 ~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
++. . |+|++ +.++. ..+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 543 3 99987 23322 37899999999999999998753
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=97.49 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHHHHhCCC---------C-------CCceEEeCCCCCC---C-
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHVIQNAPS---------Y-------RGVKHIGGNMFER---I- 262 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~---------~-------~rv~~~~~d~~~~---~- 262 (369)
....+|||||||+|.++..+++.. ..+++++|. +.+++.++. . ++++++..|..+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 355799999999999999888764 347888888 455554321 1 3788887665442 2
Q ss_pred ----CC-CCEEEeccccccCChhHHHHHHHHHHHhCC---C--CCEEEEE
Q 017595 263 ----PK-GDAILMKWILHNWDDEHCLTLLKNCYEAIP---E--NGKIIII 302 (369)
Q Consensus 263 ----p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~---p--gG~lli~ 302 (369)
+. .|+|++..++|+. +....+++.+.++|+ | ||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 22 3999999999986 557789999999999 9 9988774
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-10 Score=99.02 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC--CCCC-CCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE--RIPK-GDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~-~D~v~~~~v 273 (369)
...+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 457999999999999999999988 789999999 8887776542 479999999865 2222 588887632
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
......+++++++.|+|||++++.+....
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 24456899999999999999988665543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-10 Score=100.21 Aligned_cols=95 Identities=9% Similarity=0.132 Sum_probs=74.9
Q ss_pred cceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCC---CC-CCC-CEEEec
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFE---RI-PKG-DAILMK 271 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~---~~-p~~-D~v~~~ 271 (369)
..+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++++++.+|+.+ .+ +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999999 8877766531 489999999876 23 233 999876
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
... .....+++++.+.|+|||++++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 543 334578999999999999888755543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-10 Score=95.11 Aligned_cols=99 Identities=8% Similarity=-0.011 Sum_probs=74.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCC------CCC-CEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERI------PKG-DAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------p~~-D~v 268 (369)
.....+|||+|||+|.++..+++ .+..+++++|. +.+++.+++. ++++++.+|+.+.. +.. |+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34567999999999999999887 45678999999 8888776542 47999999997721 233 999
Q ss_pred EeccccccCChhHHHHHHHHH--HHhCCCCCEEEEEeccC
Q 017595 269 LMKWILHNWDDEHCLTLLKNC--YEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~--~~~L~pgG~lli~e~~~ 306 (369)
++...++... ...+++.+ .++|+|||++++.....
T Consensus 121 ~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 121 LLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 9988865332 23556666 88899999998876544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-10 Score=98.85 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=76.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C----------
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I---------- 262 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~---------- 262 (369)
....+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 3567999999999999999999987 689999999 8777766542 4599999998652 1
Q ss_pred -----C-C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 263 -----P-K-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 263 -----p-~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+ . .|+|++.... +....+++++.+.|+|||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 3 3999887543 445688999999999999999876543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-10 Score=99.85 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=76.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC--C-C------CC-CC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE--R-I------PK-GD 266 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~-~------p~-~D 266 (369)
+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++|+++.+|..+ + + +. .|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 467999999999999999999987 789999999 8877766532 579999999865 2 2 23 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|++... ......+++.+.+.|+|||+|++.+...
T Consensus 159 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 159 FIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 9987643 2345789999999999999988766543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-09 Score=95.89 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=74.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC--C------CceEE--eCCCCC-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY--R------GVKHI--GGNMFE-RI 262 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------rv~~~--~~d~~~-~~ 262 (369)
...+.+. ..+....+|||||||+|.++..++++ .+++++|+..+...++.. . ++.++ .+|+.+ +
T Consensus 63 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 137 (265)
T 2oxt_A 63 LAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP- 137 (265)
T ss_dssp HHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-
T ss_pred HHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-
Confidence 3445554 22556789999999999999999887 579999994343333221 2 68999 899987 4
Q ss_pred CC-CCEEEeccccccCChhH-----HHHHHHHHHHhCCCCC--EEEEEecc
Q 017595 263 PK-GDAILMKWILHNWDDEH-----CLTLLKNCYEAIPENG--KIIIIDRM 305 (369)
Q Consensus 263 p~-~D~v~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG--~lli~e~~ 305 (369)
+. .|+|++... ++.+... ...+|+.++++|+||| .+++....
T Consensus 138 ~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 33 399999876 4433221 1248999999999999 88885554
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-10 Score=98.78 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=77.1
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---CC-----C-CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---IP-----K-GD 266 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~-~D 266 (369)
....+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ . .|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3568999999999999999999987 789999999 7777766532 5899999998652 21 3 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|++... ......+++++.+.|+|||++++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 9988543 2445689999999999999999877653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-10 Score=97.04 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=75.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC------CCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCCCCC-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP------HIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFERIPK- 264 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p~- 264 (369)
.....+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ .++++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 44567999999999999999998765 368999998 777776653 25899999999875543
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 --GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 --~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+|++...+++++ +++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 39999999999874 567889999999998754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-10 Score=97.88 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=75.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCC-C--C--CC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFE-R--I--PK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~-~--~--p~-~D~v~~ 270 (369)
...+|||+|||+|.++..++.+.. .+++++|. +.+++.+++. ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 357999999999999999777753 58999999 8888766542 589999999876 2 1 23 599999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCCEEEEEeccC
Q 017595 271 KWILHNWDDEHCLTLLKNC--YEAIPENGKIIIIDRMP 306 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~--~~~L~pgG~lli~e~~~ 306 (369)
...+| . .....+++.+ .++|+|||++++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88855 3 4556788888 56799999998876543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-10 Score=93.97 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=72.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----C-CceEEeCCCCCCCC-------CCCEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----R-GVKHIGGNMFERIP-------KGDAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-rv~~~~~d~~~~~p-------~~D~v~~~~ 272 (369)
...+|||+|||+|.++..+++..++ ++++|. +.+++.+++. . +++++.+|+.+..+ ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4579999999999999999998776 999999 8887776542 2 79999999876211 239999998
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCCEEEEEeccC
Q 017595 273 ILHNWDDEHCLTLLKNCY--EAIPENGKIIIIDRMP 306 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~--~~L~pgG~lli~e~~~ 306 (369)
++| -..+ .+++.+. ++|+|||++++.....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence 876 2223 3455555 9999999998876644
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-10 Score=101.47 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCCC-CEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPKG-DAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~v~ 269 (369)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3568999999999999999998888889999999 888776542 36899999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 017595 270 MKWILHNWDDEHC--LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 270 ~~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 303 (369)
+....+..+.+.. ..+++.++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654443333322 689999999999999998864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-09 Score=97.14 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=71.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-----hHHHHhC--CCC--CCceEEeC-CCCC-CCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-----PHVIQNA--PSY--RGVKHIGG-NMFE-RIP 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a--~~~--~rv~~~~~-d~~~-~~p 263 (369)
..+.+. ..+....+|||||||+|.++..++++ .+++++|. +..++.. +.. ++|.++.+ |+.. +..
T Consensus 72 ~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~ 147 (305)
T 2p41_A 72 RWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPE 147 (305)
T ss_dssp HHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcC
Confidence 344444 32455689999999999999999987 36777776 3222222 112 57999999 9887 333
Q ss_pred CCCEEEeccccc---cCChhH-HHHHHHHHHHhCCCCCEEEEEe
Q 017595 264 KGDAILMKWILH---NWDDEH-CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 264 ~~D~v~~~~vlh---~~~d~~-~~~~L~~~~~~L~pgG~lli~e 303 (369)
..|+|++...++ +..+.. ...+|+.++++|||||.+++..
T Consensus 148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 349999976653 222222 2268999999999999888743
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-09 Score=93.86 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=78.5
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCC-CC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERI-PK-G 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~-p~-~ 265 (369)
.++..++ .....+|||+|||+|.++..+++. ..+++++|. +..++.+++. ++++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4445454 566789999999999999999998 678999998 7777765531 68999999998854 43 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+|++. .+ +...+++++.+.|+|||++++....
T Consensus 159 ~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999872 33 2347899999999999999998753
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-09 Score=99.96 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=83.2
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCC-C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIP-K 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p-~ 264 (369)
..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.++.. ++++++.+|+.+ +.+ .
T Consensus 193 ~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 193 QALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 34445444 6777899999999999999999988 8899999999 8888776542 379999999988 433 2
Q ss_pred C-CEEEeccccccCCh--h----HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 G-DAILMKWILHNWDD--E----HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 ~-D~v~~~~vlh~~~d--~----~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. |+|++......... . ....+++.+.+.|+|||++++...
T Consensus 272 ~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 272 EVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 99998655432111 1 136899999999999999998753
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=95.89 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=74.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCC--C------CceEE--eCCCCC-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSY--R------GVKHI--GGNMFE-RI 262 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------rv~~~--~~d~~~-~~ 262 (369)
+..+.+. ..+....+|||||||+|.++..++++ .+++++|+..+...+++. . ++.++ .+|+.+ +
T Consensus 71 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 145 (276)
T 2wa2_A 71 LAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME- 145 (276)
T ss_dssp HHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-
T ss_pred HHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-
Confidence 4455554 22456789999999999999999987 579999994353333221 2 68999 899876 4
Q ss_pred CC-CCEEEeccccccCChhH-----HHHHHHHHHHhCCCCC--EEEEEecc
Q 017595 263 PK-GDAILMKWILHNWDDEH-----CLTLLKNCYEAIPENG--KIIIIDRM 305 (369)
Q Consensus 263 p~-~D~v~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG--~lli~e~~ 305 (369)
+. .|+|++... +..+... ...+|+.+.++|+||| .+++....
T Consensus 146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 33 399999877 4432211 1247999999999999 88885544
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-10 Score=102.66 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=76.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC--CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. .|+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 888776543 2589999999865 2332 3999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 017595 269 LMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 269 ~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e 303 (369)
++....+..+.+. ...++++++++|+|||++++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9865422211121 3689999999999999998863
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=98.45 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=77.0
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C-CCCC-CEEEec-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R-IPKG-DAILMK- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~-~p~~-D~v~~~- 271 (369)
.....+|||+|||+|..+..+++..+ ..+++++|. +..++.+++. ++++++.+|+.+ + .+.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 55668999999999999999999975 478999999 7777765532 579999999987 3 2333 999873
Q ss_pred -----cccccCC-------hhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 -----WILHNWD-------DEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 -----~vlh~~~-------d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.++++.+ .++ ..++|+++.+.|||||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 3344332 111 2589999999999999998876543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=8.2e-10 Score=99.42 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=75.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCCC-CEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPKG-DAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~v~~ 270 (369)
.+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+. .+.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998877789999999 888776542 36899999998762 2233 99998
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDEH--CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e 303 (369)
....+..+.+. ...++++++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443322111 2579999999999999998764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=94.61 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=76.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-----CCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCCC----
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-----PHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFERI---- 262 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~---- 262 (369)
.....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4456899999999999999999986 5789999999 777776543 257999999998743
Q ss_pred C--C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 263 P--K-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 263 p--~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+ . .|+|++...++++ ++++.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 2 2 3999999999876 36778999999999987653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.5e-10 Score=101.05 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=75.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC--CC-CC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE--RI-PK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~~-p~-~D~v~ 269 (369)
....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. +. .|+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 888776543 3689999999865 22 23 39999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 270 MKWILHNWDDE--HCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 270 ~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+....+..+.. ....++++++++|+|||++++....
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 86544322211 1347899999999999999886643
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.1e-10 Score=101.77 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=77.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCC---CCCC-CEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFER---IPKG-DAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~---~p~~-D~v~ 269 (369)
...+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+.. |+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 568999999999999999999888889999999 777775542 36899999998762 2333 9999
Q ss_pred ecccccc---CChhH--HHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILHN---WDDEH--CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh~---~~d~~--~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+....|. -+.+. ...++++++++|+|||++++...
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9766554 21111 36899999999999999998643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.8e-11 Score=105.25 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=93.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC-CCEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK-GDAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~D~v~~~~vlh 275 (369)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++.. ++++++.+|+.+ +.+. .|+|++..++|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 46899999999999999999875 78999999 8887766542 479999999987 4222 39999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
+.++. ...+.+++++|+|||++++.... ...... . . + --+....+++..++...|.-.++.
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~-~~~~~~--------~-----~--~-lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSK-KITNNI--------V-----Y--F-LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHH-HHCSCE--------E-----E--E-EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHH-hhCCce--------E-----E--E-CCCCCCHHHHHHHhccCCCEEEEe
Confidence 87543 34677899999999985542211 000000 0 0 0 012235677778887777666665
Q ss_pred EEecCce
Q 017595 356 ECFVCNF 362 (369)
Q Consensus 356 ~~~~~~~ 362 (369)
....+..
T Consensus 217 ~~~~~~~ 223 (241)
T 3gdh_A 217 NFLNNKL 223 (241)
T ss_dssp EEETTEE
T ss_pred hhhcCcc
Confidence 5555443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=98.96 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=73.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC----------------CCCCceEEeCCCCCC--CCC-C
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP----------------SYRGVKHIGGNMFER--IPK-G 265 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~rv~~~~~d~~~~--~p~-~ 265 (369)
...+|||||||+|.++..+++. |..+++++|+ +.+++.++ ..++++++.+|..+. .+. .
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4689999999999999999998 8889999999 87776543 246899999998652 133 3
Q ss_pred CEEEeccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 DAILMKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+|++....+..+.+. ...++++++++|+|||++++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543222222 2678999999999999998864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-09 Score=92.82 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=75.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCCCC-C--CCE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFERIP-K--GDA 267 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p-~--~D~ 267 (369)
.....+|||||||+|..+..+++.. ++.+++++|. +.+++.+++ .+++.++.+|+....+ . .|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456899999999999999999885 6679999999 777776543 2479999999876322 2 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|++...++++. +++.+.|||||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99999988763 5688999999999987653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=93.46 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=73.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC--CCCC-C-CEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE--RIPK-G-DAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p~-~-D~v~~~~vl 274 (369)
...+|||+|||+|.++..++.+.. .+++++|. +.+++.+++. ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999999887753 38999999 8888776542 589999999876 3332 3 999998775
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCEEEEEecc
Q 017595 275 HNWDDEHCLTLLKNCYE--AIPENGKIIIIDRM 305 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~ 305 (369)
| . .....+++.+.+ +|+|||++++....
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5 3 344577888876 49999999877653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-10 Score=97.63 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=76.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---CC-----C-CCE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---IP-----K-GDA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~-~D~ 267 (369)
+..+|||||||+|..+..+++..| +.+++++|. +..++.+++. ++++++.+|+.+. ++ . .|+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 457999999999999999999987 789999999 7777766542 4799999997541 21 3 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|++... .+....+++++.+.|+|||+|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987654 2456789999999999999999877654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.3e-10 Score=96.87 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=75.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC--C-C------CCC-C
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE--R-I------PKG-D 266 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~-~------p~~-D 266 (369)
+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++++++.+|..+ + + +.. |
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 567999999999999999999987 789999999 8777766532 479999999875 2 2 233 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+|++... ......+++++.+.|+|||++++.+..
T Consensus 150 ~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 150 FGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred EEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 9987532 345678999999999999988876554
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.1e-10 Score=101.18 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=72.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~v~~ 270 (369)
...+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+. .+. .|+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 568999999999999999999888889999999 888776542 36899999998762 123 399998
Q ss_pred ccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDEHC--LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 303 (369)
...-+.-++... ..++++++++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 654332222221 689999999999999998865
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-09 Score=100.99 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=75.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCCC-CEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPKG-DAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~v~~ 270 (369)
...+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 458999999999999999998878889999999 888775532 36899999998762 2333 99998
Q ss_pred ccccccCChhHH--HHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDEHC--LTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~~~--~~~L~~~~~~L~pgG~lli~e 303 (369)
...-+..+.+.. ..++++++++|+|||++++..
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 643221111221 689999999999999998864
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.7e-09 Score=90.88 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~ 276 (369)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++.. .+..+...|+.. +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999999887 8899999999 8888876643 567899999998 55544 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
+.+++....+ ++...|+|++.++-.+
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9766655555 8899999998777666
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-09 Score=97.30 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=73.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 264 (369)
+..+++.++ .....+|||||||+|.++..+++... +++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345566565 56678999999999999999999864 7788887 7666654421 579999999988 6776
Q ss_pred CCEEEeccccccCChhHHHHHHH--------------HH--HHhCCCCCEE
Q 017595 265 GDAILMKWILHNWDDEHCLTLLK--------------NC--YEAIPENGKI 299 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~--------------~~--~~~L~pgG~l 299 (369)
.|+|+++.. ++++.+...++|. ++ +++++|||++
T Consensus 94 fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 94 FDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred hcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 699888543 4454444445543 22 4689999965
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-09 Score=89.46 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-CCceEEeCCCCCCCCCC-CEEEeccccccCChhH
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-RGVKHIGGNMFERIPKG-DAILMKWILHNWDDEH 281 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p~~-D~v~~~~vlh~~~d~~ 281 (369)
....+|||+|||+|.++..+++. +..+++++|. +.+++.+++. .+++++.+|+.+ ++.. |+|++...+|++++..
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCch
Confidence 35679999999999999999887 5557999999 8887776543 389999999987 3344 9999999999987655
Q ss_pred HHHHHHHHHHhC
Q 017595 282 CLTLLKNCYEAI 293 (369)
Q Consensus 282 ~~~~L~~~~~~L 293 (369)
..++++++.+.+
T Consensus 128 ~~~~l~~~~~~~ 139 (200)
T 1ne2_A 128 DRAFIDKAFETS 139 (200)
T ss_dssp CHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc
Confidence 568999999998
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-09 Score=92.92 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=73.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----------CCceEEeCCCCCCCCCCCEEEecccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------RGVKHIGGNMFERIPKGDAILMKWIL 274 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~~p~~D~v~~~~vl 274 (369)
.+.+|||||||+|.++..+++. + .+++++|+ +.+++.++++ +|++++.+|..+-....|+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d--- 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL--- 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES---
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC---
Confidence 5689999999999999999988 7 89999999 8999888753 57999999987733234999976
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+++. .+++.++++|+|||.+++..
T Consensus 147 --~~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 --QEPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp --SCCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred --CCChH--HHHHHHHHhcCCCcEEEEEc
Confidence 23332 48999999999999998864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-09 Score=96.00 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=79.0
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC-CCCC-CEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER-IPKG-DAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-~p~~-D~v~~~~vl 274 (369)
+.+..+|||+|||+|.++..+++.++..+++++|. +.+++.+++ .+++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45668999999999999999999988889999999 888776654 25789999999874 3223 999887653
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
....+++++.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 34568999999999999999888754
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=98.14 Aligned_cols=98 Identities=19% Similarity=0.211 Sum_probs=72.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCCC---CCC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFER---IPK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~v~~ 270 (369)
...+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+. .|+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999888889999999 877775543 36899999998652 223 399997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDE---HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~---~~~~~L~~~~~~L~pgG~lli~e 303 (369)
...-+..... ...+++++++++|+|||++++..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5332201110 12589999999999999998863
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=92.26 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=82.2
Q ss_pred cCCcceEEEEcC------ChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCCCCCceE-EeCCCCC-CCCCC-CEEEecc
Q 017595 204 FEQIKQLVDVGG------GLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPSYRGVKH-IGGNMFE-RIPKG-DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~rv~~-~~~d~~~-~~p~~-D~v~~~~ 272 (369)
+....+|||+|| |+|. ..+++..| +.+++++|+ +. .+++++ +.+|+.+ +++.. |+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEECccccCCccCcccEEEEcC
Confidence 556789999999 5577 44566666 689999999 54 247899 9999988 45444 9999864
Q ss_pred cccc--------C-ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 273 ILHN--------W-DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 273 vlh~--------~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
..+. . ..+....+|+.+++.|||||++++..+... ..+++.+
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~ 182 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYK 182 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHH
Confidence 3221 0 123356899999999999999998654211 1236777
Q ss_pred HHHHcCCcceeEE
Q 017595 344 LANEAGFNGVNYE 356 (369)
Q Consensus 344 ll~~aGf~~~~~~ 356 (369)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8888888877765
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-09 Score=97.68 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=70.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEecccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~ 276 (369)
+.++|||||||+|.++...++... .+++++|...+++.|++ .++|+++.+|+.+ ++|+. |+|++..+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 357999999999999887666543 47888888545554442 2689999999988 77765 99987554444
Q ss_pred CChh-HHHHHHHHHHHhCCCCCEEEE
Q 017595 277 WDDE-HCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 277 ~~d~-~~~~~L~~~~~~L~pgG~lli 301 (369)
+..+ ....++....+.|+|||+++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 3323 456788888899999998763
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-09 Score=105.27 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC---CCC-C-CCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE---RIP-K-GDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~---~~p-~-~D~v~~~~v 273 (369)
.+.+|||||||.|.++..+++. +.+++++|. +..++.|+.+ -+|++..+++.+ ..+ . .|+|++..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5679999999999999999987 568999999 7777766532 358999999865 233 2 399999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
|||+++++...-+.++.+.|+++|+.++...+..+.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEE 179 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence 999988775555667888888888888887765443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.72 E-value=9.7e-09 Score=95.48 Aligned_cols=100 Identities=9% Similarity=0.152 Sum_probs=79.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCC-----CeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCCCC-CC-CEEEec
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPH-----IEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFERIP-KG-DAILMK 271 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p-~~-D~v~~~ 271 (369)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.++.+|.+.+.+ .. |+|++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35689999999999999999988765 68899998 7777665531 268999999988543 33 999999
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCCEEEEEec
Q 017595 272 WILHNWDDEHC----------------LTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh~~~d~~~----------------~~~L~~~~~~L~pgG~lli~e~ 304 (369)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88777654432 2689999999999999988764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-08 Score=94.72 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=77.6
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCC-CC-CEEEec
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIP-KG-DAILMK 271 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~-D~v~~~ 271 (369)
.+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .++.++.+|+++..+ .. |+|+++
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 3334343 3345699999999999999999987 6789999999 7777666 689999999988433 33 999995
Q ss_pred cccc----------cCChhHH-----------------HHHHHHHHHhCCCCCEEEEEec
Q 017595 272 WILH----------NWDDEHC-----------------LTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh----------~~~d~~~-----------------~~~L~~~~~~L~pgG~lli~e~ 304 (369)
-... |++++.. ..+++++.+.|+|||+++++-+
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3221 1222221 2679999999999999988765
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-08 Score=96.48 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=80.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CC-CC-CEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IP-KG-DAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~-D~v~~ 270 (369)
.....+|||+|||+|..+..+++..++ .+++++|. +..++.+++ .+++.++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 456689999999999999999999887 79999999 776665443 2579999999987 3 44 33 99986
Q ss_pred ------ccccccCChhH-------H-------HHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 271 ------KWILHNWDDEH-------C-------LTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 271 ------~~vlh~~~d~~-------~-------~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
..++++.++.. . .++|+++.+.|||||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 34555554321 1 5789999999999999998876553
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-08 Score=83.00 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----C-CceEEeCCCCCCCC-CCCEEEeccccccC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----R-GVKHIGGNMFERIP-KGDAILMKWILHNW 277 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-rv~~~~~d~~~~~p-~~D~v~~~~vlh~~ 277 (369)
....+|||+|||+|.++..+++..+ .+++++|. +.+++.++.. . +++++.+|+.+ ++ ..|+|++...+|..
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3567999999999999999998743 37999998 7777766542 2 79999999987 33 34999999998887
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.......+++++.+.+ |+ +++..
T Consensus 126 ~~~~~~~~l~~~~~~l--~~-~~~~~ 148 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS--DV-VYSIH 148 (207)
T ss_dssp STTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred cCCchHHHHHHHHHhc--Cc-EEEEE
Confidence 6555678899999998 44 44433
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=92.66 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=89.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCCC-C-CEEEecc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPK-G-DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~-D~v~~~~ 272 (369)
+....+|||+|||+|.++..++...+..+++++|+ +.+++.++.. ++++++.+|+.+ +.+. . |+|++..
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999988778999999 8888776542 479999999988 5543 3 9999975
Q ss_pred ccccCC------hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 273 ILHNWD------DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 273 vlh~~~------d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
..+... .+.-..+++.+.+.| ||+++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544321 111267888999988 555555432 1344666888
Q ss_pred HcCCcceeEEEec
Q 017595 347 EAGFNGVNYECFV 359 (369)
Q Consensus 347 ~aGf~~~~~~~~~ 359 (369)
+.||+..+..++.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 8999998887765
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=91.53 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=75.8
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CC-----CCC-CEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RI-----PKG-DAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-----p~~-D~v 268 (369)
.....+|||+|||+|..+..+++..++ .+++++|. +..++.+++ .++++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 445679999999999999999999877 78999998 777665543 2589999999876 32 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 269 LMK------WILHN---WDD-------EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 269 ~~~------~vlh~---~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
++. .+++. |+. +...++|+++.+.|||||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 876 22221 111 223689999999999999999876654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-08 Score=88.70 Aligned_cols=103 Identities=9% Similarity=0.195 Sum_probs=71.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCC-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPK-GD 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~-~D 266 (369)
.+.+++.++ .....+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 345666555 5567899999999999999999987 67888888 777665443 3689999999988 6664 35
Q ss_pred EEEeccccccCChhHHHHHH--------------HHHHHhCCCCCEE
Q 017595 267 AILMKWILHNWDDEHCLTLL--------------KNCYEAIPENGKI 299 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L--------------~~~~~~L~pgG~l 299 (369)
+++..+.-++++.+-..+++ +.+.+.++|+|++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 45555555555433333333 3366777777643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-09 Score=92.63 Aligned_cols=107 Identities=11% Similarity=0.193 Sum_probs=77.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----CCceEEeCCCCC-CCCC-CC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFE-RIPK-GD 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~-~D 266 (369)
...+++.++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. ..
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 345555565 5667899999999999999999986 78999999 7888777653 579999999988 6653 33
Q ss_pred EEEeccccccCChhHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 017595 267 AILMKWILHNWDDEHCLTLL--------------KNCYEAIPENGKIIIID 303 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L--------------~~~~~~L~pgG~lli~e 303 (369)
+++.++.-++.+.+....++ +.+.+.|+|||++.+..
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 34444444444433333333 66899999999876644
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-07 Score=84.53 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=100.3
Q ss_pred hHHHHHHhccCc----CCcceEEEEcCChhHHHHHH--------HHhC-------CCCeEEEcchhHH--------HHhC
Q 017595 193 VMNRILDSYNGF----EQIKQLVDVGGGLGVTLNII--------TSRY-------PHIEGVNFDLPHV--------IQNA 245 (369)
Q Consensus 193 ~~~~~~~~~~~~----~~~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a 245 (369)
.+++.++.+... .+..+|+|+|||+|..+..+ .+++ |.+.++.-|+|.- +...
T Consensus 35 ~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~ 114 (374)
T 3b5i_A 35 LLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPL 114 (374)
T ss_dssp HHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCB
T ss_pred HHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhh
Confidence 444445555411 23589999999999888776 3333 7888888887521 1111
Q ss_pred CC----------C-CC---ceEEeCCCCC-CCCCC--CEEEeccccccCChh----------------------------
Q 017595 246 PS----------Y-RG---VKHIGGNMFE-RIPKG--DAILMKWILHNWDDE---------------------------- 280 (369)
Q Consensus 246 ~~----------~-~r---v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~---------------------------- 280 (369)
.+ . .+ +.-+++.|+. .+|.. |+|+++.+||.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ 194 (374)
T 3b5i_A 115 VSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTT 194 (374)
T ss_dssp CCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHH
T ss_pred hhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHH
Confidence 11 0 01 3556788887 67765 999999999987511
Q ss_pred --------HHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhh----hhhhHHH-HHh--------hc--C--Ccc
Q 017595 281 --------HCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREA----SMTDIIM-LMQ--------FS--G--GRE 335 (369)
Q Consensus 281 --------~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~----~~~d~~~-~~~--------~~--~--~~~ 335 (369)
+...+|+..++.|+|||++++.-...++........... ....... +.. .. + ...
T Consensus 195 ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ 274 (374)
T 3b5i_A 195 AYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYA 274 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccC
Confidence 344579999999999999998877654421100000000 0000010 100 00 1 123
Q ss_pred CCHHHHHHHHH-HcCCcceeEEE
Q 017595 336 RTTQEFMALAN-EAGFNGVNYEC 357 (369)
Q Consensus 336 ~t~~e~~~ll~-~aGf~~~~~~~ 357 (369)
+|.+|++++++ +.||++.++.-
T Consensus 275 ps~~E~~~~l~~~~~F~I~~le~ 297 (374)
T 3b5i_A 275 PSLQDFKEVVDANGSFAIDKLVV 297 (374)
T ss_dssp CCHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCcEEEEEEE
Confidence 69999999998 58999877643
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-08 Score=91.02 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=73.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C--CceEEeCCCCCCC------C-CCCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R--GVKHIGGNMFERI------P-KGDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~------p-~~D~v~ 269 (369)
...+|||+|||+|.++..++.... +++++|. +.+++.+++. + +++++.+|+++.. . ..|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998754 8999999 8887766542 2 5999999998722 2 249998
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 270 MKWI----------LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 270 ~~~v----------lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+... ++.. ++...+++++.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8432 2222 45678999999999999997776654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-08 Score=88.76 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=87.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC--CCEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK--GDAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~v~~~~vl 274 (369)
....+|||+|||+|.++..++.+. ..+++.+|+ |..++.+++ .++++++.+|..+-.+. .|.|++...
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p- 201 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC-
Confidence 467899999999999999988774 568999999 877776653 26799999999873333 398887643
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcce
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV 353 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 353 (369)
..+..+|..+.++|+|||.|.+.+.+.... ......+.+++++++.|+++.
T Consensus 202 -----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred -----CcHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 223467888999999999998877653221 011235567788889998753
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.56 E-value=8.5e-08 Score=91.78 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=78.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-C--CCC--CCEEEe--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-R--IPK--GDAILM-- 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~--~p~--~D~v~~-- 270 (369)
.....+|||+|||+|..+..+++..++.+++++|. +..++.+++. -++.++.+|+.+ + ++. .|+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45567999999999999999999999889999998 6665554321 258999999987 2 332 399986
Q ss_pred ----ccccccCChh-------HH-------HHHHHHHHHhCCCCCEEEEEeccC
Q 017595 271 ----KWILHNWDDE-------HC-------LTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 271 ----~~vlh~~~d~-------~~-------~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..++++.++. +. .++|+++.+.|||||++++.....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2455554432 11 488999999999999999887654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-08 Score=87.46 Aligned_cols=99 Identities=13% Similarity=0.228 Sum_probs=69.7
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKGD 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~D 266 (369)
+.+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..|
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D 108 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD 108 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence 34455454 556789999999999999999987 357899998 777665543 2689999999988 565559
Q ss_pred EEEeccccccCChhHHHHHH---------------HHHHHhCCCCC
Q 017595 267 AILMKWILHNWDDEHCLTLL---------------KNCYEAIPENG 297 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L---------------~~~~~~L~pgG 297 (369)
+|++.. -++++.+...++| +.+.+.++|+|
T Consensus 109 ~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 109 VCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 998754 4556666666666 44678888876
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=84.26 Aligned_cols=141 Identities=12% Similarity=0.144 Sum_probs=104.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC---------------------------CCCceEEeCCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS---------------------------YRGVKHIGGNM 258 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~rv~~~~~d~ 258 (369)
+...||.+|||.......+...+++++++.+|.|.+++.-++ .++..++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 568999999999999999999889999999999988764221 26799999999
Q ss_pred CC-CC--------C--CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh--hH
Q 017595 259 FE-RI--------P--KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT--DI 324 (369)
Q Consensus 259 ~~-~~--------p--~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~--d~ 324 (369)
.+ ++ + .. .++++-.+|++++.++...+|+.+.+.+ |+|.+++.|.+.+..+... +...+ .+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~----fg~~m~~~l 251 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR----FGAIMQSNL 251 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC----HHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch----HHHHHHHHh
Confidence 87 33 1 12 7889999999999999999999999987 7888888999877332111 11111 11
Q ss_pred HH-HHh-hcC-CccCCHHHHHHHHHHcCCc
Q 017595 325 IM-LMQ-FSG-GRERTTQEFMALANEAGFN 351 (369)
Q Consensus 325 ~~-~~~-~~~-~~~~t~~e~~~ll~~aGf~ 351 (369)
.. ... ..+ ....+.++..+.|.++||+
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 11 000 001 1335889999999999997
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.4e-08 Score=92.01 Aligned_cols=102 Identities=8% Similarity=0.054 Sum_probs=76.0
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-C--CCCC-CEEEe-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-R--IPKG-DAILM- 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~v~~- 270 (369)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++. . +.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 445689999999999999999999875 68999999 7777765532 4 8999999876 2 3333 99985
Q ss_pred -----ccccc-------cCChhHH-------HHHHHHHHHhCCCCCEEEEEeccC
Q 017595 271 -----KWILH-------NWDDEHC-------LTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 271 -----~~vlh-------~~~d~~~-------~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..+++ .++.++. .++|+.+.+.|||||+|+...-..
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 12232 2332222 689999999999999998765544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-07 Score=89.20 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=76.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCCC-CEEEec--
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPKG-DAILMK-- 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~-D~v~~~-- 271 (369)
...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..++.++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 568999999999999999999875 478999999 777766543 2579999999987 3 3443 999872
Q ss_pred ----cccc-------cCChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 ----WILH-------NWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ----~vlh-------~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.+++ +|+.++ ..++|+++.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 2333 233222 2478999999999999998876544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=93.62 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=87.1
Q ss_pred hhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccC---cCCcceEEEEcCChhHHHHHH---HHh-CCCCeEEEcchhH
Q 017595 168 VYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNG---FEQIKQLVDVGGGLGVTLNII---TSR-YPHIEGVNFDLPH 240 (369)
Q Consensus 168 ~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l---~~~-~p~~~~~~~D~~~ 240 (369)
.||.+++|+-.-..|.+++.. .+.+..+. ..+...|+|||||+|-++... +++ .-.++++.++-..
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 578889998777777776643 23332221 224468999999999884433 333 2334678888744
Q ss_pred HHHhCCC-------CCCceEEeCCCCC-CCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEE
Q 017595 241 VIQNAPS-------YRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 241 ~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~ll 300 (369)
++..+.+ .++|+++.+|+.+ ..|+. |+|++-.+=+.+..|-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 4444433 2689999999999 78876 99988776665555666678888889999999764
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.1e-08 Score=90.96 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=71.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C--CceEEeCCCCCCC------C-CCCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R--GVKHIGGNMFERI------P-KGDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~------p-~~D~v~ 269 (369)
...+|||+|||+|.++..++... ..+++++|. +.+++.+++. + +++++.+|+++.+ + ..|+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 45799999999999999999863 237899998 7777766531 3 8999999997622 1 239999
Q ss_pred eccccc-----cCC--hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILH-----NWD--DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh-----~~~--d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+..... ... -+...++++.+.+.|+|||.|++...
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 853321 221 13345688899999999999887654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.5e-06 Score=78.54 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=92.3
Q ss_pred cceEEEEcCChhHHHHHHHHh-----------------CCCCeEEEcchh-----------HH-HH----h-CCCCCC--
Q 017595 207 IKQLVDVGGGLGVTLNIITSR-----------------YPHIEGVNFDLP-----------HV-IQ----N-APSYRG-- 250 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~----~-a~~~~r-- 250 (369)
..+|+|+||++|..+..+... .|.+.++.-|+| .. .+ . ....+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999988876665 477888888987 11 11 1 111112
Q ss_pred ceEEeCCCCC-CCCCC--CEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 017595 251 VKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH-------------------------C------------LTLLKNCY 290 (369)
Q Consensus 251 v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~-------------------------~------------~~~L~~~~ 290 (369)
+.-+++.|+. .+|.. |+|+++.+||.+++.. . ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567777 57765 9999999999765321 1 12377779
Q ss_pred HhCCCCCEEEEEeccCCCC--CcchHHHhhhhhhhHHHHH--------hh-cCCccCCHHHHHHHHHHcC-CcceeEE
Q 017595 291 EAIPENGKIIIIDRMPMVT--PEATAAAREASMTDIIMLM--------QF-SGGRERTTQEFMALANEAG-FNGVNYE 356 (369)
Q Consensus 291 ~~L~pgG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~--------~~-~~~~~~t~~e~~~ll~~aG-f~~~~~~ 356 (369)
+.|+|||++++.-...... ...........+.++.... .+ .-...++.+|++++++++| |++.++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999887765443 1110000111121211110 01 0123469999999999985 7877653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-06 Score=78.03 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=91.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHh----------------CCCCeEEEcchhH--HHHhCCCC------CC---ceEEeCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR----------------YPHIEGVNFDLPH--VIQNAPSY------RG---VKHIGGN 257 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~--~~~~a~~~------~r---v~~~~~d 257 (369)
++..+|+|+||++|..+..+... .|.+.++.-|+|. .-...+.. .+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35679999999999765543332 4677888888852 11111111 12 3456678
Q ss_pred CCC-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 258 MFE-RIPKG--DAILMKWILHNWDD-------------------------------EHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 258 ~~~-~~p~~--D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+. .+|.. |+++++..||.+++ .+...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 887 67875 99999999997653 123456999999999999999877
Q ss_pred ccCCCCCcch------HHHhhhhhhhHHHHHhh---------cCCccCCHHHHHHHHHHcCC-cceeE
Q 017595 304 RMPMVTPEAT------AAAREASMTDIIMLMQF---------SGGRERTTQEFMALANEAGF-NGVNY 355 (369)
Q Consensus 304 ~~~~~~~~~~------~~~~~~~~~d~~~~~~~---------~~~~~~t~~e~~~ll~~aGf-~~~~~ 355 (369)
...+...... +......+.++...... .-...++.+|++++++++|+ ++.+.
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 6554431100 00011111111111000 01124689999999999965 66654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-07 Score=90.02 Aligned_cols=126 Identities=18% Similarity=0.106 Sum_probs=85.5
Q ss_pred hhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh----C---------CCCeEE
Q 017595 168 VYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR----Y---------PHIEGV 234 (369)
Q Consensus 168 ~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~---------p~~~~~ 234 (369)
.||-+++|+-.-..|.+++.. .+.+.++.-.+...|||||||+|.++...+.+ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 577788888777777776654 22222221124578999999999996432222 1 234788
Q ss_pred Ecch-hHHHHhCCC------CCCceEEeCCCCC-CC------CC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEE
Q 017595 235 NFDL-PHVIQNAPS------YRGVKHIGGNMFE-RI------PK-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKI 299 (369)
Q Consensus 235 ~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~------p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 299 (369)
.++. |..+...+. .++|+++.+|+.+ .. ++ .|+|++-..=+....+-...+|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8887 443322211 2679999999998 55 44 49999888766555565667888889999999965
Q ss_pred E
Q 017595 300 I 300 (369)
Q Consensus 300 l 300 (369)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-07 Score=90.13 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=78.3
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-------------CCCeEEEcch-hHHHHhCCC------CC--CceE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-------------PHIEGVNFDL-PHVIQNAPS------YR--GVKH 253 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~--rv~~ 253 (369)
.+.+.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.|+. .. ++.+
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i 240 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 240 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence 3333333 3455799999999999999988763 4567899998 777665542 12 6889
Q ss_pred EeCCCCC-CCCCC-CEEEeccccccCChh---------------HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 254 IGGNMFE-RIPKG-DAILMKWILHNWDDE---------------HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 254 ~~~d~~~-~~p~~-D~v~~~~vlh~~~d~---------------~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.+|.+. +.... |+|+++-.++..... ....+++++.+.|+|||++.++-+
T Consensus 241 ~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 241 VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 9999988 43333 999998776653221 124789999999999999988764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-07 Score=88.60 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=73.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------C-C-CceEEeCCCCCCC------CC-CCEEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------Y-R-GVKHIGGNMFERI------PK-GDAIL 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-rv~~~~~d~~~~~------p~-~D~v~ 269 (369)
...+|||+|||+|.++..++... ..+++++|. +.+++.+++ . + +++++.+|+++.. +. .|+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999874 458999998 777776543 2 3 7899999997721 22 39999
Q ss_pred eccccccCC-------hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILHNWD-------DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh~~~-------d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.-.....+ ......++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 863221110 14567899999999999999888664
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-07 Score=88.89 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=74.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCC------CCC-CEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERI------PKG-DAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~------p~~-D~v~~~ 271 (369)
...+|||+|||+|.++..++.. ..+++++|. +.+++.++.. ++++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999988 567899998 7777766542 45999999997621 223 999985
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 272 WILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 272 ~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
-.....+. .....+++++.+.|+|||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 43222111 34568999999999999999887654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=77.22 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=66.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--CCceEEeCCCCC-CCCCC--CE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--RGVKHIGGNMFE-RIPKG--DA 267 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~ 267 (369)
.+.+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 345666565 556789999999999999999987 4578999998 7787776653 579999999988 66542 56
Q ss_pred EEeccccccCChhHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLL 286 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L 286 (369)
++..+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666666444333333
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-07 Score=89.00 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=74.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------C-CceEEeCCCCCCC------CC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------R-GVKHIGGNMFERI------PK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~~------p~-~D~v~~ 270 (369)
...+|||+|||+|.++..++.. +..+++++|. +.+++.+++. + +++++.+|+++.. +. .|+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5679999999999999999987 3458999998 7777766542 2 7999999987621 22 399998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 271 KWILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 271 ~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.-..+..+. .....+++++.+.|+|||++++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 543222211 44668999999999999998887654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.4e-07 Score=84.00 Aligned_cols=110 Identities=7% Similarity=0.008 Sum_probs=79.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC--------------------------------------CeEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH--------------------------------------IEGVN 235 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 235 (369)
+..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 345555454 777889999999999999998876544 56999
Q ss_pred cch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCC-CEEEeccccccC-C-hhHHHHHHHHHHHhCCC--CCEEEE
Q 017595 236 FDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKG-DAILMKWILHNW-D-DEHCLTLLKNCYEAIPE--NGKIII 301 (369)
Q Consensus 236 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~-~-d~~~~~~L~~~~~~L~p--gG~lli 301 (369)
+|. +.+++.++.. ++++++.+|+.+ +.+.. |+|++.--...- . .++...+.+.+.+.|++ ||.+.|
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999 8888776542 469999999988 44443 999988543321 1 24455667777777765 888888
Q ss_pred Eec
Q 017595 302 IDR 304 (369)
Q Consensus 302 ~e~ 304 (369)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-07 Score=85.14 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCCCCEEEecccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPKGDAILMKWILHN 276 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 276 (369)
....+|||+|||+|.++.. +. ...+++++|. +.+++.+++. ++++++.+|+++.....|+|++...
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 3568999999999999999 76 4678999999 8777766532 5799999999884433499998532
Q ss_pred CChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 277 WDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 277 ~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.....+++.+.+.|+|||++++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 112378999999999999999887653
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-06 Score=80.52 Aligned_cols=110 Identities=16% Similarity=0.070 Sum_probs=82.0
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC--------------------------------------CeEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH--------------------------------------IEGVN 235 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 235 (369)
+..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 445555444 777889999999999999998876544 56999
Q ss_pred cch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CCEEEE
Q 017595 236 FDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKG-DAILMKWILHN-W-DDEHCLTLLKNCYEAIPE--NGKIII 301 (369)
Q Consensus 236 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~-~-~d~~~~~~L~~~~~~L~p--gG~lli 301 (369)
+|. +.+++.++.. ++++++.+|+.+ +.+.. |+|++.--.+. + ..++...+.+.+.+.||+ |+++.|
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999 8888776542 469999999988 44443 99998855432 2 235667788888888886 898888
Q ss_pred Eec
Q 017595 302 IDR 304 (369)
Q Consensus 302 ~e~ 304 (369)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 765
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.4e-07 Score=84.00 Aligned_cols=99 Identities=11% Similarity=0.025 Sum_probs=71.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCCC---CCC-CCEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFER---IPK-GDAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p~-~D~v~~~~vlh 275 (369)
...+|||+|||+|.++..++.... +++++|+ +.+++.+++. -...+..+|+++. .+. .|+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 468999999999999999998744 4999999 7777766542 1235778998762 233 49998864321
Q ss_pred cCCh-------hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 276 NWDD-------EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 276 ~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.-+. .....+++.+.+.|+|||+|++.....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1111 234588999999999999999776543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-07 Score=86.69 Aligned_cols=103 Identities=11% Similarity=0.066 Sum_probs=75.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCCC-CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPKG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~-D~v~~~ 271 (369)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 455689999999999999999998664 68999999 777766543 2578999999876 2 3343 999873
Q ss_pred c------ccccC-------ChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 W------ILHNW-------DDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 ~------vlh~~-------~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
- ++..- +.++ ..++|+.+.+.|||||+|+...-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 23222 1111 2388999999999999998766544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.6e-07 Score=79.86 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCCCC---C-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFERIP---K-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p---~-~D~v 268 (369)
+.+++||=||+|.|..+.++++..+..+++.+++ |.+++.+++ .+|++++.+|.+.-+. + .|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998877778999999 888886543 3799999999987322 2 2999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 269 LMKWILHNWDDE--HCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 269 ~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+.-..=-.-+.+ -...+++.++++|+|||.+++.-..
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 865321111110 0247899999999999999887544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=79.26 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=61.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCC--C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPK--G 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~--~ 265 (369)
++.+++.+. .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 345666565 5667899999999999999999983 57778887 666665543 3789999999998 6665 3
Q ss_pred CEEEeccccccCChh
Q 017595 266 DAILMKWILHNWDDE 280 (369)
Q Consensus 266 D~v~~~~vlh~~~d~ 280 (369)
|+|+++.. ++++.+
T Consensus 116 D~Iv~NlP-y~is~p 129 (295)
T 3gru_A 116 NKVVANLP-YQISSP 129 (295)
T ss_dssp SEEEEECC-GGGHHH
T ss_pred cEEEEeCc-ccccHH
Confidence 98886644 334333
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-06 Score=81.96 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=80.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC--------------------------------------CeEEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH--------------------------------------IEGVN 235 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 235 (369)
+..++.... +.+..+|||++||+|.++.+++....+ .++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344555444 777789999999999999998876432 57999
Q ss_pred cch-hHHHHhCCCC-------CCceEEeCCCCC-CCCCC-CEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CCEEEE
Q 017595 236 FDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIPKG-DAILMKWILHN-WD-DEHCLTLLKNCYEAIPE--NGKIII 301 (369)
Q Consensus 236 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~-~~-d~~~~~~L~~~~~~L~p--gG~lli 301 (369)
+|. +.+++.++.. +++++..+|+.+ +.+.. |+|++.--... +. .++...+.+.+.+.|++ |+.+.|
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999 8888877642 379999999988 44443 99999765432 21 24566778888778876 888888
Q ss_pred Eec
Q 017595 302 IDR 304 (369)
Q Consensus 302 ~e~ 304 (369)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 754
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-06 Score=73.67 Aligned_cols=114 Identities=9% Similarity=0.034 Sum_probs=70.1
Q ss_pred HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchh-HHHHhCCCC----CCceEEeCCCCC-CCCC-
Q 017595 192 IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP-HVIQNAPSY----RGVKHIGGNMFE-RIPK- 264 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~rv~~~~~d~~~-~~p~- 264 (369)
+.+.++.+... ++...+|||+|||+|.++..++++.+-.+++++|+. ......... .++.....++.. .++.
T Consensus 61 ~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 139 (277)
T 3evf_A 61 AKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPV 139 (277)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCC
Confidence 44556666643 667789999999999999988877654455545542 111111111 134444554422 3433
Q ss_pred -CCEEEeccccc---cCChh-HHHHHHHHHHHhCCCC-CEEEEEeccCC
Q 017595 265 -GDAILMKWILH---NWDDE-HCLTLLKNCYEAIPEN-GKIIIIDRMPM 307 (369)
Q Consensus 265 -~D~v~~~~vlh---~~~d~-~~~~~L~~~~~~L~pg-G~lli~e~~~~ 307 (369)
.|+|++....+ ++.|+ ....+|+.+.+.|+|| |.+++ ..+.|
T Consensus 140 ~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~p 187 (277)
T 3evf_A 140 KCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLAP 187 (277)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESCT
T ss_pred CccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecCC
Confidence 39999987665 12122 2235689999999999 99887 55543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-06 Score=77.53 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=62.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---CCCceEEeCCCCC-CCCC--CCE
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---YRGVKHIGGNMFE-RIPK--GDA 267 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~--~D~ 267 (369)
+.+++... .... +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. ...
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 35555555 5556 99999999999999999986 46777776 666554432 2689999999988 6653 223
Q ss_pred EEeccccccCChhHHHHHHHH
Q 017595 268 ILMKWILHNWDDEHCLTLLKN 288 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~ 288 (369)
++..+.-++.+.+-..++|..
T Consensus 113 ~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEECSSCCHHHHHHHHHH
T ss_pred EEEecCcccccHHHHHHHhcC
Confidence 445555666766655555554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=9.4e-07 Score=89.48 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=72.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCC---CCC-CCEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFER---IPK-GDAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p~-~D~v~~~~ 272 (369)
...+|||+|||+|.++..++.... .+++++|+ +.+++.+++. ++++++.+|+++. ... .|+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 467999999999999999887543 46999999 7777766531 3799999999872 223 39999854
Q ss_pred c-----------cccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 I-----------LHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 v-----------lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. ++.. .....+++.+.+.|+|||+|++...
T Consensus 618 P~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2 2222 4566899999999999999986554
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.6e-06 Score=79.81 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=69.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC----
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP---- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---- 263 (369)
+.+++.++ ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.++. .++++++.+|+.+.++
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34444444 456679999999999999999987 568999998 777776653 2589999999987332
Q ss_pred -C--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 264 -K--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 264 -~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
. .|+|++.---.. +..+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEEE
Confidence 1 399987533222 2245555544 6888776663
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-06 Score=75.73 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=61.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----CCceEEeCCCCC-CCCC---
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----RGVKHIGGNMFE-RIPK--- 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~--- 264 (369)
...+++.+. .....+|||||||+|.++. + ++.+..+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 445556555 5667899999999999999 5 4555444888998 8887766543 589999999987 5432
Q ss_pred ---CCEEEeccccccCChhHHHHHH
Q 017595 265 ---GDAILMKWILHNWDDEHCLTLL 286 (369)
Q Consensus 265 ---~D~v~~~~vlh~~~d~~~~~~L 286 (369)
.+.++..+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2345555555555544444444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.1e-06 Score=78.56 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=66.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCC-CCCEEEeccccccC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIP-KGDAILMKWILHNW 277 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~ 277 (369)
+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. + ++++.+|+++..+ ..|+|++.-.-...
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGL 366 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCS
T ss_pred CCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccch
Confidence 56799999999999999999873 57899998 7777766542 3 8999999988443 34999985442222
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
. ..+++.+. .|+|||.+++..
T Consensus 367 ~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 367 H----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp C----HHHHHHHH-HHCCSEEEEEES
T ss_pred H----HHHHHHHH-hcCCCcEEEEEC
Confidence 1 23555554 489999888753
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-07 Score=79.80 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC--CeEEEcch-hHHHHhCCC--CCCceEEeCCCCC-CCC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH--IEGVNFDL-PHVIQNAPS--YRGVKHIGGNMFE-RIP 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p 263 (369)
+.+++.+. .....+|||||||+|.++..++++.+. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34555555 566789999999999999999998764 45888888 777776654 3689999999988 554
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.5e-05 Score=68.82 Aligned_cols=143 Identities=12% Similarity=0.119 Sum_probs=103.3
Q ss_pred CcceEEEEcCChhHHHHHHHHh-CCCCeEEEcchhHHHHhCC-----------------------------CCCCceEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDLPHVIQNAP-----------------------------SYRGVKHIG 255 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~rv~~~~ 255 (369)
+...||-+|||.=....++... .++++++.+|.|.+++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999999998876 4689999999998876311 136789999
Q ss_pred CCCCC--CC---------CC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh
Q 017595 256 GNMFE--RI---------PK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT 322 (369)
Q Consensus 256 ~d~~~--~~---------p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 322 (369)
.|+.+ .+ .. . -++++-.+|.+++.++...+|+.+.+... +|.+++.|.+.+.++ +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------HHHHH
Confidence 99976 22 21 1 57888899999999999999999999875 566778898865431 11111
Q ss_pred hHHHHHhhcCC------ccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 323 DIIMLMQFSGG------RERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 323 d~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
--.+. ..|. ...+.++..++|.++||+.+++..+
T Consensus 242 ~~~l~--~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLR--RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHH--TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHH--HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 10111 1111 2247789999999999998877654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-06 Score=75.02 Aligned_cols=67 Identities=9% Similarity=0.236 Sum_probs=52.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIP 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p 263 (369)
...+++.+. .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345555555 5667899999999999999999886 57888888 777766543 3789999999998 554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.9e-06 Score=74.31 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=79.9
Q ss_pred CcceEEEEcCChhHHHHHHHHh-------CCC-----CeEEEcch-h---HHHHhC------------------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSR-------YPH-----IEGVNFDL-P---HVIQNA------------------------ 245 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a------------------------ 245 (369)
+..+|||||+|+|..+..+++. .|+ ++++.++. | ..+..+
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988886654 674 57888886 4 211110
Q ss_pred -------CCCCCceEEeCCCCC---CCCC-----CCEEEecc-ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 246 -------PSYRGVKHIGGNMFE---RIPK-----GDAILMKW-ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 246 -------~~~~rv~~~~~d~~~---~~p~-----~D~v~~~~-vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
....+++++.+|+.+ ..+. .|+|++-. .-..-|+--...+|+.+++.|+|||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 011357899999866 2332 39988742 11111110134789999999999998884110
Q ss_pred CcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEE
Q 017595 310 PEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEF 367 (369)
Q Consensus 310 ~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 367 (369)
...++..|.++||++.++...+..--++.+
T Consensus 215 ----------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 215 ----------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp ----------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred ----------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 013566778899997765444433334443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.7e-05 Score=69.95 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=71.3
Q ss_pred hhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCC-ceEEeC-CCCCCC
Q 017595 190 TSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRG-VKHIGG-NMFERI 262 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r-v~~~~~-d~~~~~ 262 (369)
+.+.+.++.+++. +....+|||+|||.|.++...++..+-.+++++|+ ......+.. ..+ +.+... |+.. +
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l 152 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-M 152 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-S
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-c
Confidence 3445667777774 77778999999999999999888776666777776 222111111 112 233322 4332 3
Q ss_pred C-C-CCEEEeccccc----cCChhHHHHHHHHHHHhCCCC--CEEEEE
Q 017595 263 P-K-GDAILMKWILH----NWDDEHCLTLLKNCYEAIPEN--GKIIII 302 (369)
Q Consensus 263 p-~-~D~v~~~~vlh----~~~d~~~~~~L~~~~~~L~pg--G~lli~ 302 (369)
+ . .|+|++-...+ ..+......+|+-+.+.|+|| |.+++-
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 3 2 39999887766 111112235788889999999 988874
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1e-05 Score=73.25 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=60.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-C--CC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-R--IP- 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~--~p- 263 (369)
.+.+++.+. .....+|||+|||+|..+..+++++|+.+++++|. +.+++.+++. ++++++.+|+.+ + ++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345555555 55678999999999999999999999889999999 8888766532 689999999866 2 11
Q ss_pred ----CCCEEEecc
Q 017595 264 ----KGDAILMKW 272 (369)
Q Consensus 264 ----~~D~v~~~~ 272 (369)
..|.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 238887643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=66.72 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=95.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC---------CCCCceEEeCCCCCCCC----------CC-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP---------SYRGVKHIGGNMFERIP----------KG- 265 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~rv~~~~~d~~~~~p----------~~- 265 (369)
+...||++|||-=.....+.. .++++++.+|.|.+++..+ ..++..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 457899999998887666642 2358999999998877533 23678999999986321 11
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhh-hHH-HHH-----hhcCCcc-CC
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMT-DII-MLM-----QFSGGRE-RT 337 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~-~~~-----~~~~~~~-~t 337 (369)
-++++..+||++++++...+|+.+.+.+.||+.|++ |.+.++.... ........ ... ... ....... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCSHH--HHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 578899999999999999999999999999887664 5554432111 00000000 000 000 0001122 25
Q ss_pred -HHHHHHHHHHcCCcce
Q 017595 338 -TQEFMALANEAGFNGV 353 (369)
Q Consensus 338 -~~e~~~ll~~aGf~~~ 353 (369)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7899999999999987
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.9e-05 Score=68.80 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=66.6
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-h-------HHHHhCCCC-------CCceEEeCCCCCC---CC--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-P-------HVIQNAPSY-------RGVKHIGGNMFER---IP-- 263 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~rv~~~~~d~~~~---~p-- 263 (369)
.....+|||+|||+|..+..++.. ..+++++|. + ..++.++.. .+++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344579999999999999999986 468999998 7 666666532 4699999998762 33
Q ss_pred -C-CCEEEeccccccCCh------------------hHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 264 -K-GDAILMKWILHNWDD------------------EHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 264 -~-~D~v~~~~vlh~~~d------------------~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
. .|+|++.-.+++-.. .+...+++.+.+..+ .+++|..+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 3 399999766654321 123455566666643 3666666543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.4e-06 Score=76.65 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=63.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC---CC-------------
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER---IP------------- 263 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p------------- 263 (369)
..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+. ++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 3689999999999999988754 47899998 777776653 25899999998651 11
Q ss_pred ---CCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 264 ---KGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 264 ---~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..|+|++.---. .+.+++.+.|+|+|+++.+..
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 238887643211 234556667778998887753
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-05 Score=75.04 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=69.3
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---------------------CCCceEEeCCCCCC---
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---------------------YRGVKHIGGNMFER--- 261 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------------~~rv~~~~~d~~~~--- 261 (369)
..+|||+|||+|..+..++.+.+..+++++|. +..++.+++ ..+++++.+|+.+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 57999999999999999999988888999999 777665432 12388999998662
Q ss_pred CCC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 262 IPK-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 262 ~p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+. .|+|++.- .. ....+|..+.+.|+|||.+++..
T Consensus 128 ~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 233 39988542 11 12478999999999999877764
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.72 E-value=7.9e-05 Score=67.73 Aligned_cols=101 Identities=9% Similarity=0.030 Sum_probs=67.5
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CC--C---CCCEEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RI--P---KGDAIL 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~--p---~~D~v~ 269 (369)
.....+|||+|||+|..+..+++.. +..+++.+|. +..++.+++ ..+++++.+|+.+ +. + ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4456899999999999999999885 5678999998 777665543 2579999999876 22 1 238888
Q ss_pred ec------cccccCCh---------hH-------HHHHHHHHHHhCCCCCEEEEEecc
Q 017595 270 MK------WILHNWDD---------EH-------CLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 270 ~~------~vlh~~~d---------~~-------~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+. .++...+| ++ -.++|+.+.+.++ ||+|+...-.
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 62 22322111 11 1357888888776 8877765443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.6e-05 Score=76.49 Aligned_cols=110 Identities=13% Similarity=-0.017 Sum_probs=75.1
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC------------------------------------------CCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY------------------------------------------PHI 231 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~~ 231 (369)
+..++.... +....+|||.+||+|.++++.+... ++.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555444 7777899999999999999877652 346
Q ss_pred eEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCC----CCCEEEecccccc-C-ChhHHHHHHHHHHHh---C
Q 017595 232 EGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIP----KGDAILMKWILHN-W-DDEHCLTLLKNCYEA---I 293 (369)
Q Consensus 232 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p----~~D~v~~~~vlh~-~-~d~~~~~~L~~~~~~---L 293 (369)
+++++|. +.+++.|+.. +.+++..+|+.+ ..| ..|+|+++--... + .+++...+.+.+.+. +
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 7999999 8888776542 458999999987 223 2399998844321 1 223444555554444 4
Q ss_pred CCCCEEEEEec
Q 017595 294 PENGKIIIIDR 304 (369)
Q Consensus 294 ~pgG~lli~e~ 304 (369)
.|||++.|+..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 58999998754
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.6e-05 Score=76.57 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=72.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC------------------CCeEEEcch-hHHHHhCCC------CCC-----ceE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP------------------HIEGVNFDL-PHVIQNAPS------YRG-----VKH 253 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~r-----v~~ 253 (369)
.....+|+|.+||+|.++..+.+... ..+++++|+ +.++..|+. ... +.+
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 34557999999999999988876532 236889998 766665432 233 789
Q ss_pred EeCCCCC-C-CC--CCCEEEeccccccCCh------------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 254 IGGNMFE-R-IP--KGDAILMKWILHNWDD------------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 254 ~~~d~~~-~-~p--~~D~v~~~~vlh~~~d------------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..+|.+. + .+ ..|+|+++-.+..... .....+++++.+.|+|||++.++-+
T Consensus 247 ~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 247 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 9999987 3 22 3499998765543211 1234789999999999999998753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00021 Score=63.37 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=68.6
Q ss_pred hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchh-HHHHhCCC----CCC-ceEEeC-CCCCCCC
Q 017595 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLP-HVIQNAPS----YRG-VKHIGG-NMFERIP 263 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~r-v~~~~~-d~~~~~p 263 (369)
.+.+.++.+. .-+....+|||+||++|.++..++++.+-..++++|+. ........ ..+ +.+..+ |++.-.+
T Consensus 67 a~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~ 145 (300)
T 3eld_A 67 AAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPT 145 (300)
T ss_dssp HHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCC
T ss_pred HHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCC
Confidence 3445566666 44667789999999999999999987655567777762 21111110 112 233333 4443122
Q ss_pred C-CCEEEeccccccCCh-----hHHHHHHHHHHHhCCCC-CEEEEE
Q 017595 264 K-GDAILMKWILHNWDD-----EHCLTLLKNCYEAIPEN-GKIIII 302 (369)
Q Consensus 264 ~-~D~v~~~~vlh~~~d-----~~~~~~L~~~~~~L~pg-G~lli~ 302 (369)
. .|+|++...-+ -.. .....+|+-+.+.|+|| |.+++-
T Consensus 146 ~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 146 EPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 2 39999876655 221 11246788889999999 998875
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.4e-05 Score=73.36 Aligned_cols=92 Identities=9% Similarity=-0.021 Sum_probs=70.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCC-------CC-ceEEeCCCCC--C--CCC-CCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSY-------RG-VKHIGGNMFE--R--IPK-GDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~--~--~p~-~D~v~~ 270 (369)
+..+|||++||+|.++..++.+.++ .+++.+|. +..++.+++. ++ ++++.+|.++ . .+. .|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998765 47899999 7777765531 34 9999999865 2 223 399987
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.- +.. ...+++.+.+.|+|||.|++..
T Consensus 132 DP--~g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 65 211 2358999999999999877765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00032 Score=64.63 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=67.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCC-CCCC--CEEEeccccccCChh
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFER-IPKG--DAILMKWILHNWDDE 280 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~p~~--D~v~~~~vlh~~~d~ 280 (369)
+....++||+||++|.++..++++ +.+++++|...+.......++|+++.+|.+.. .+.. |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 346789999999999999999987 57899999855544445568999999999983 3333 9999888753 23
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 281 HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 281 ~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
....++.+.......++.++....
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 344444444444444455554444
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00019 Score=72.23 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=68.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC---CCeEEEcch-hHHHHhC------CC------CCCceEEeCCCCCCC--C--C
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP---HIEGVNFDL-PHVIQNA------PS------YRGVKHIGGNMFERI--P--K 264 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a------~~------~~rv~~~~~d~~~~~--p--~ 264 (369)
....+|||.|||+|.++..+++..+ ..+++++|+ +.+++.+ .. .....+...|++.+. + .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999998876 357889998 6655544 11 123456666776621 2 2
Q ss_pred CCEEEecccccc-CC-hh-------------------------HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 GDAILMKWILHN-WD-DE-------------------------HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 ~D~v~~~~vlh~-~~-d~-------------------------~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+|+++--.-. .. +. -...+++.+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 399998755411 11 11 123478899999999999988765
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00037 Score=60.46 Aligned_cols=112 Identities=15% Similarity=0.122 Sum_probs=68.4
Q ss_pred hhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh--CCCCeE--EEcchhHHHHhCCCCCCc---eEEeC-CCCCC
Q 017595 190 TSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR--YPHIEG--VNFDLPHVIQNAPSYRGV---KHIGG-NMFER 261 (369)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~--~~~D~~~~~~~a~~~~rv---~~~~~-d~~~~ 261 (369)
+.+.+.++-+++ -++...+|||+||+.|.++...+++ ...+++ ++.|+ ..........++ .+..+ ||++.
T Consensus 58 AayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~ 135 (269)
T 2px2_A 58 GTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYK 135 (269)
T ss_dssp HHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGS
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCC
Confidence 344566777775 4788899999999999999998876 222122 44442 111111111455 45547 99873
Q ss_pred CCC-CCEEEeccccccCC----hhH-HHHHHHHHHHhCCCCC-EEEEEec
Q 017595 262 IPK-GDAILMKWILHNWD----DEH-CLTLLKNCYEAIPENG-KIIIIDR 304 (369)
Q Consensus 262 ~p~-~D~v~~~~vlh~~~----d~~-~~~~L~~~~~~L~pgG-~lli~e~ 304 (369)
-+. .|+|++-..=. -+ |+. ...+|.-+.+.|+||| .+++--+
T Consensus 136 ~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 136 PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 333 49998765432 11 111 2235777789999999 8887433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=8.5e-05 Score=68.72 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=70.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------------CCceEEeCCCCCCC------C-
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------------RGVKHIGGNMFERI------P- 263 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~~~------p- 263 (369)
.+++||=||+|.|..+.++++. |..+++.+|+ |.+++.++++ +|++++.+|...-+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999975 4578999999 8888865431 56899999987521 1
Q ss_pred CCCEEEecccccc-------CC-hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 264 KGDAILMKWILHN-------WD-DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 264 ~~D~v~~~~vlh~-------~~-d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..|+|+.--.=.. .. ..-.+.+++.++++|+|||.++..-.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 2399986532110 00 01135789999999999998887643
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.6e-05 Score=87.93 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=64.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC-----CeEEEcch-hHHHHhCCCC-C--CceEEeCCCCCC---CCC-CCEEEecc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH-----IEGVNFDL-PHVIQNAPSY-R--GVKHIGGNMFER---IPK-GDAILMKW 272 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--rv~~~~~d~~~~---~p~-~D~v~~~~ 272 (369)
...+||+||+|+|..+..+++...+ .+++.-|. +...+.+++. . .+.....|..++ .+. .|+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3579999999999877776665432 25666676 5555555433 1 122222233222 223 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcc
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNG 352 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 352 (369)
+||.. .+....|+++++.|||||++++.+...... +.......-......+...+.++|.++|.++||+.
T Consensus 1320 vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccc--ccHHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence 99976 345678999999999999999988642110 00000000000000123457788999999999998
Q ss_pred eeEEE
Q 017595 353 VNYEC 357 (369)
Q Consensus 353 ~~~~~ 357 (369)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76643
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.39 E-value=7.8e-05 Score=73.09 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=67.4
Q ss_pred ceEEEEcCChhHHHHHHHHhCC---------------CCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-C-C
Q 017595 208 KQLVDVGGGLGVTLNIITSRYP---------------HIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-R-I 262 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~ 262 (369)
.+|+|.+||+|.++..+.+..+ ..+++++|+ +.+...|+.. .++.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999988765432 467899999 7776655421 235558888876 3 2
Q ss_pred CC--CCEEEecccccc--CChh-------------------------HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 263 PK--GDAILMKWILHN--WDDE-------------------------HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 263 p~--~D~v~~~~vlh~--~~d~-------------------------~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+. .|+|+++--+.. |..+ .-..+++.+.+.|+|||++.++-+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 32 399998644432 2111 112589999999999999888753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0011 Score=52.40 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=58.3
Q ss_pred CcceEEEEcCChh-HHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCC----CCCEEEeccccccCCh
Q 017595 206 QIKQLVDVGGGLG-VTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIP----KGDAILMKWILHNWDD 279 (369)
Q Consensus 206 ~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p----~~D~v~~~~vlh~~~d 279 (369)
...++||||||.| ..+..|++. .+..+++.|+ |..++ ++..|+|++.. ..|+|...+ |+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----PP 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----PP 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----CC
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----CC
Confidence 4579999999999 588888764 3577888887 54333 89999999654 349987665 33
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.+....+.++++.. |.-++|.-...+
T Consensus 100 ~El~~~i~~lA~~v--~adliI~pL~~E 125 (153)
T 2k4m_A 100 AEIHSSLMRVADAV--GARLIIKPLTGE 125 (153)
T ss_dssp TTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 44445555555543 566777655443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.31 E-value=5.9e-05 Score=66.61 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred cCCc--ceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHH-------HHhCCC-------C-CCceEEeCCCCC---CC
Q 017595 204 FEQI--KQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHV-------IQNAPS-------Y-RGVKHIGGNMFE---RI 262 (369)
Q Consensus 204 ~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~rv~~~~~d~~~---~~ 262 (369)
..+. .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++. . .+++++.+|..+ .+
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4444 79999999999999999998 457999998 543 332211 1 479999999875 23
Q ss_pred CC-CCEEEecccccc
Q 017595 263 PK-GDAILMKWILHN 276 (369)
Q Consensus 263 p~-~D~v~~~~vlh~ 276 (369)
+. .|+|++.-.+++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 33 399999877765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.003 Score=63.93 Aligned_cols=144 Identities=12% Similarity=0.080 Sum_probs=103.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC--------CCeEEEcchhHHHHhCCC------------------------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP--------HIEGVNFDLPHVIQNAPS------------------------------ 247 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 247 (369)
+...||-+|||.=....+|...+| +++++.+|.|.+++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999988766 789999999988763111
Q ss_pred CCCceEEeCCCCC--CC----------CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcch
Q 017595 248 YRGVKHIGGNMFE--RI----------PKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEAT 313 (369)
Q Consensus 248 ~~rv~~~~~d~~~--~~----------p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~ 313 (369)
.++..++..|+.+ .+ ... -++++--+|.+++.++..++|+.+.+ + |++.+++.|.+.+..+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378999999987 21 222 57888899999999999999999985 4 6888999998876533222
Q ss_pred HHHhhhhhhhHHHHHhhcC------CccCCHHHHHHHHHHcCCcceeEEE
Q 017595 314 AAAREASMTDIIMLMQFSG------GRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 314 ~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
+...+--.+. ..+ ....+.++..+.|.+.||+.+....
T Consensus 265 ----f~~~m~~~~~--~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 ----FSKQMLAHFK--RNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp ----HHHHHHHHHH--HTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred ----HHHHHHHHHH--HcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 1121111111 001 1234799999999999998776654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0023 Score=54.65 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=76.4
Q ss_pred hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh---CCCC--CCceEEeC-CCCC-CC
Q 017595 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN---APSY--RGVKHIGG-NMFE-RI 262 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~--~rv~~~~~-d~~~-~~ 262 (369)
.+.+.++.+.+. ++...+|||+||++|.++...+....-.+++++|. +.-.+. .+.+ +.|+|..+ |++. +.
T Consensus 64 ~~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 64 SAKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC
Confidence 345667777774 77778999999999999998887765557899998 322211 1112 67999999 9765 22
Q ss_pred CCCCEEEeccccccCChhH-----HHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 263 PKGDAILMKWILHNWDDEH-----CLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 263 p~~D~v~~~~vlh~~~d~~-----~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
...|+|+|-..=.. +.+. ..++|+-+.++|++ |-++| -.+.+..
T Consensus 143 ~~~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py~ 191 (267)
T 3p8z_A 143 EKCDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPYM 191 (267)
T ss_dssp CCCSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCCS
T ss_pred ccccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCCC
Confidence 22498887654322 2211 23577777899999 66766 4454543
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00034 Score=53.11 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhC--CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhcCC
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQM--PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~~~ 125 (369)
.+..|++.|... |+.|+.+||+.+ ++ .+..+++.|+.|...|+|... ..+.|++|+.+..++...
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~------~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL------ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC------STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec------CCceEEECchHHHHHHHH
Confidence 356788889775 499999999999 99 999999999999999999874 345999999999777653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00054 Score=67.03 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=71.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhC---CCCeEEEcch-hHHHHhCCC------C--CCceEEeCCCCC-CCC---C--CCE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRY---PHIEGVNFDL-PHVIQNAPS------Y--RGVKHIGGNMFE-RIP---K--GDA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~--~rv~~~~~d~~~-~~p---~--~D~ 267 (369)
...+|+|.+||+|.++..+.+.. +..+++++|+ +.+...++. . +++.+..+|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999998885 3578899998 766665542 1 467899999987 443 1 399
Q ss_pred EEeccccc-cCChh--------------------HHHHHHHHHHHhCC-CCCEEEEEec
Q 017595 268 ILMKWILH-NWDDE--------------------HCLTLLKNCYEAIP-ENGKIIIIDR 304 (369)
Q Consensus 268 v~~~~vlh-~~~d~--------------------~~~~~L~~~~~~L~-pgG~lli~e~ 304 (369)
|+++--+. .|... .-..+++.+.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99763321 11100 01248999999999 9999988754
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0025 Score=56.29 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=74.4
Q ss_pred HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh---CCCC--CCceEEeC-CCCC-CCC
Q 017595 192 IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN---APSY--RGVKHIGG-NMFE-RIP 263 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~--~rv~~~~~-d~~~-~~p 263 (369)
+.+.++.+.+. +....+|||+||++|.++...+....-.+++++|+ ..-.+. .+.. .-|.++.+ |++. +..
T Consensus 81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~ 159 (321)
T 3lkz_A 81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE 159 (321)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence 44567777655 67778999999999999998777765557899998 321110 1111 34888888 8766 222
Q ss_pred CCCEEEeccccccCChhH-----HHHHHHHHHHhCCCC-CEEEEEeccCCC
Q 017595 264 KGDAILMKWILHNWDDEH-----CLTLLKNCYEAIPEN-GKIIIIDRMPMV 308 (369)
Q Consensus 264 ~~D~v~~~~vlh~~~d~~-----~~~~L~~~~~~L~pg-G~lli~e~~~~~ 308 (369)
..|+|++--. ..-+.+. ..++|+-+.++|++| |-++| -.+.+.
T Consensus 160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~pY 208 (321)
T 3lkz_A 160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLCPY 208 (321)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESCTT
T ss_pred CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcCCC
Confidence 2488887655 3333322 235777788999998 77776 444443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0011 Score=59.11 Aligned_cols=94 Identities=20% Similarity=0.136 Sum_probs=65.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhC-----CCCeEEEcch-hH------------------------------HHH---hCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRY-----PHIEGVNFDL-PH------------------------------VIQ---NAP 246 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~------------------------------~~~---~a~ 246 (369)
.+++|||||+..|..+..++... ++-+++++|. .. +.+ .+.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 46899999999999988877654 4778888873 11 111 111
Q ss_pred C-CCCceEEeCCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 247 S-YRGVKHIGGNMFER---IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 247 ~-~~rv~~~~~d~~~~---~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
- .++|+++.||+.+. ++.. |+|++-.-.+ +.....|+.+.+.|+|||.|++-|
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 1 27899999999763 3322 7777765321 345688999999999999666544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=55.75 Aligned_cols=88 Identities=9% Similarity=0.061 Sum_probs=59.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC---------CCCceEEeCCCCCC--------------
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS---------YRGVKHIGGNMFER-------------- 261 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~-------------- 261 (369)
+..+||||||| ..+..+++ .++.+++.+|. +...+.+++ .++|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46799999985 56666665 45778888887 666555432 35799999996431
Q ss_pred ----------CC--C-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 262 ----------IP--K-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 262 ----------~p--~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.+ . .|+|+.-.- .....+..+.+.|+|||.|+ .|.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv-~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLL-FDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEE-ETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEE-EeC
Confidence 12 2 399987652 12355666779999999775 554
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00039 Score=47.68 Aligned_cols=55 Identities=13% Similarity=0.301 Sum_probs=45.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+..|++.|...+ .+++..+||+.+|+ +...+.+.|..|...|+|... ..++|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~------~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP------SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE------ETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC------CCceEeeC
Confidence 456888887642 48999999999999 999999999999999998753 35788764
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0015 Score=46.49 Aligned_cols=66 Identities=15% Similarity=0.284 Sum_probs=50.2
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
-.+..|++.|.+.+|+.++|+.+||+++|+ ...-+.+.|.-|...|+|.... ...++|...+....
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g----~~~~~W~i~~~~~~ 75 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA----GTPPLWKIAVSTQA 75 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES----SSSCEEEEC-----
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC----CCCCeeEEeCcHHh
Confidence 346678888988755558999999999999 8999999999999999998642 23578888766543
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00081 Score=49.61 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 43 SMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 43 ~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++..-.++.|+..| . ++.++.+||+.+++ .+.-+.+.|+.|...|++... . +.|.+++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~------~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV------G-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------T-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE------C-CEEEECCCch
Confidence 34445567788888 5 48999999999999 999999999999999999875 3 5888887654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00065 Score=63.85 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=49.8
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCCC-----CCCEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERIP-----KGDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~p-----~~D~v~~~ 271 (369)
...+|||+|||+|..+..+++.. .+++++|. +.+++.++. .++++++.+|+.+.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 35899999999999999988774 58899998 777776543 2579999999987321 24999884
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0015 Score=57.72 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--CCCceEEeCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--YRGVKHIGGNMFE 260 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 260 (369)
.+++++.+. +.....+||++||.|..+..++++ +.+++++|. |.+++.+++ .+|+.++.+||.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 556777676 667789999999999999999998 679999999 877765432 2689999999976
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=45.89 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=49.2
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
-.+..|++.|...+++.+.|+.+||+++|+ +..-+.+.|+-|...|++.... ..+++|..++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g----~~~~~W~i~~ 75 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA----GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC----SSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC----CCCCceEecC
Confidence 346678888888643347999999999999 8999999999999999998642 1346777654
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0023 Score=47.65 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=47.0
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
--.++.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|.....+ ....|++++.
T Consensus 22 ~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g---~~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNI---KQIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSS---SCCEEEECSS
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC---CEEEEEECcH
Confidence 3455667777865 48999999999999 999999999999999999864211 2346777753
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=46.00 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=50.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcc-cHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGV-MLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
.+-.|++.|... ||.|+.+||+.+|+ .+. .+++.|..|...|+|.... .+.-.|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~----~gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG----TTPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC----SSSCEEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecC----CCCCCeEeCHhHHh
Confidence 455688888886 59999999999999 888 9999999999999998541 12238999988764
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0019 Score=47.70 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=48.2
Q ss_pred HHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 44 MQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 44 l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
+..-.++.|+..|.. ++.|+.+||+.+|+ .+..+.+.|+.|...|+|...... ....|++++.
T Consensus 20 l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g---~~~~y~l~~~ 82 (98)
T 3jth_A 20 MANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEA---QTVYYTLKSE 82 (98)
T ss_dssp HCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCT---TCCEEEECCH
T ss_pred cCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC---CEEEEEECHH
Confidence 333456678888876 48999999999999 999999999999999999864210 2345776653
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=49.17 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=51.8
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.+|.--.++.|+..|.. ++.++.+||+.+|+ .+..+.+.|+.|...|+|...... ....|++++...
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~g---r~~~y~l~~~~~ 79 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQG---RVRTCAIEKEPF 79 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECSHHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecC---CEEEEEECHHHH
Confidence 44445567888888885 48999999999999 999999999999999999764210 224677776443
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0045 Score=46.58 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=47.3
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
|+..|.. ++.++.+|++.+ ++ ++..+.+.|+.|...|+|.....+.......|.+|+.+..+.
T Consensus 19 IL~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 19 ILXHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 4444543 489999999999 99 999999999999999999875322111224689998876554
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0033 Score=46.36 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=54.2
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYF 121 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~ 121 (369)
.++..-.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|++.............|.+|+.+...
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~ 83 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence 455556678888888654 48999999999999 99999999999999999985321100122468888776543
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.004 Score=48.12 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 43 SMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 43 ~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
+|..-.++.|+..|... ++.|+.+||+.+|+ .+..+.+.|+.|...|++..... + ....|++++.
T Consensus 38 al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~--g-r~~~y~l~~~ 102 (122)
T 1u2w_A 38 AIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKE--G-KLALYSLGDE 102 (122)
T ss_dssp HHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-------CCEEEESCH
T ss_pred HhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEE--C-CEEEEEECHH
Confidence 34444577788888754 48999999999999 99999999999999999986421 0 1235777643
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=55.96 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=46.8
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.|++.|...+ ++.|+.|||+++|+ +..-+.|+|+.|+..|+|.++ ..+.|++++..-
T Consensus 34 ~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~------~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 34 RILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS------ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC------TTSEEEECTHHH
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC------CCCcEEehHHHH
Confidence 6888888753 47999999999999 899999999999999999985 346899987544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=53.16 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=55.3
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC--CCCceEEeCCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS--YRGVKHIGGNMFE 260 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 260 (369)
..+++++.+. ......+||..+|.|..+..++++. |+.+++++|. |.+++.++. .+|++++.++|.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567777776 6677899999999999999999984 8899999999 888887643 2688889888865
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.015 Score=45.69 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=48.4
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 5677788888875 48999999999999 9999999999999999998753211111234677877776553
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0087 Score=46.76 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCC
Q 017595 27 TYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSA 105 (369)
Q Consensus 27 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 105 (369)
.....++++.+-|...+|. .|.. |+.++.||++.+ |+ .+..|.+.|+.|...|+|.....+.
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4566677777777666554 3333 489999999999 99 9999999999999999998753221
Q ss_pred CCCCcceecChhchhhhc
Q 017595 106 GDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 106 ~~~~~~y~~t~~~~~~~~ 123 (369)
......|++|+.+..+..
T Consensus 78 d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SSCEEEEEECTTGGGGHH
T ss_pred CCCeEEEEECHhHHHHHH
Confidence 111246999999887664
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=45.80 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=47.8
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
-.++.|+..|... ++.|+.+||+.+|+ ++..+.+.|+.|...|++..... + ....|.+++.+
T Consensus 24 ~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~--~-r~~~y~l~~~~ 85 (99)
T 3cuo_A 24 PKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRD--A-QRILYSIKNEA 85 (99)
T ss_dssp HHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEEC--S-SCEEEEECCHH
T ss_pred hHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec--C-CEEEEEEChHH
Confidence 4566788888663 48999999999999 99999999999999999987521 0 22356776543
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0054 Score=46.46 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.++.|+..|.. ++.|+.+||+.+|+ ++..+.++|+.|...|++..... + ....|.+|+.+.
T Consensus 22 ~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~--g-r~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKV--G-REIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEE--T-TEEEEEECSHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEec--C-CEEEEEechHHH
Confidence 45667777844 48999999999999 99999999999999999986421 0 123477776554
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=49.65 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
...+|.--.++.|+..|.. ++.|+.+||+.+|+ .+..+.+.|+.|...|+|..... + ....|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~--G-r~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKD--G-RFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEE--T-TEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec--C-CEEEEEEChHHH
Confidence 4556666778899999985 48999999999999 99999999999999999986421 1 224688887554
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0069 Score=45.92 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCC
Q 017595 28 YSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAG 106 (369)
Q Consensus 28 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 106 (369)
...+.++..+.|... |+..|.. ++.+..+||+.+ ++ ++..+.+.|+.|...|+|.....+..
T Consensus 12 ~~~~l~~l~~~~~~~---------IL~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 12 INLALSTINGKWKLS---------LMDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp HHHHHHTTCSTTHHH---------HHHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred HHHHHHHHcCccHHH---------HHHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 344455555555443 4445554 389999999999 99 99999999999999999987532211
Q ss_pred CCCcceecChhchhhh
Q 017595 107 DNQRLYSLAPVAKYFV 122 (369)
Q Consensus 107 ~~~~~y~~t~~~~~~~ 122 (369)
.....|.+|+.+..+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 1123589998887654
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0054 Score=46.00 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=40.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-.++.|+..|.. ++.++.+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 26 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 26 YNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 445667777775 48999999999999 999999999999999999864
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0076 Score=45.66 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=55.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCC--HHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCC
Q 017595 29 SFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLS--AAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSA 105 (369)
Q Consensus 29 ~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t--~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 105 (369)
..+.+.+.+.|...+ +..|.. |+.+ +.||++.+ |+ .+..+.+.|+.|...|+|.....
T Consensus 18 ~~~l~~l~~~wrl~I---------L~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-- 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLI---------ISVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-- 78 (111)
T ss_dssp SSTHHHHHSTTHHHH---------HHHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES--
T ss_pred HHHHHHHcCccHHHH---------HHHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec--
Confidence 445566666665554 445553 4777 99999999 99 99999999999999999987421
Q ss_pred CCCCcceecChhchhhhc
Q 017595 106 GDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 106 ~~~~~~y~~t~~~~~~~~ 123 (369)
....|++|+.+..+..
T Consensus 79 --r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 79 --QITTYALTEKGMNVRN 94 (111)
T ss_dssp --SSEEEEECHHHHHHHH
T ss_pred --CcEEEEECccHHHHHH
Confidence 2457999988876553
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=53.47 Aligned_cols=54 Identities=9% Similarity=0.141 Sum_probs=38.7
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC---CCCCceEEeCCCCC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP---SYRGVKHIGGNMFE 260 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~rv~~~~~d~~~ 260 (369)
...|||||+|.|.++..|+++...-+++.++. +..++..+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47999999999999999998743234555554 33333221 35799999999976
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.011 Score=41.80 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=39.2
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..|++.|... ++.|+.|||+.+|+ .+.-+.+.|+.|...|++...
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3577778764 48999999999999 999999999999999999853
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0086 Score=41.99 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=37.6
Q ss_pred hhHHHHhc-----CCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKA-----GPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~-----~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|++.|... | +|.|+.|||+.+|+ .+.-+++.|..|...|++...
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 55555543 3 58999999999999 888999999999999999875
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.012 Score=51.53 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=48.2
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++..+ ..+.|++++...
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~------~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK------KDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC------TTSCEEECTHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC------CCCcEEECHHHH
Confidence 46778887642 37999999999999 999999999999999999874 357899987543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.02 Score=52.78 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=70.0
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------------CCCCceEEeCCCCC--C-CCCC-C
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------------SYRGVKHIGGNMFE--R-IPKG-D 266 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~-~p~~-D 266 (369)
.....+|||+.+|.|.=+.++++..++-.++..|. +.-++..+ ...++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 45678999999999999999999887767888887 44333221 12568888888765 2 2333 8
Q ss_pred EEEec----c----c-------cccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 267 AILMK----W----I-------LHNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 267 ~v~~~----~----v-------lh~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
.|++- . + ...+..++ -.++|+++.+.|||||+|+-..-.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 88642 1 1 12222222 24789999999999998876555443
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.003 Score=47.62 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=39.4
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.|+..|.. ++.|+.+||+.+|+ .+..+.+.|+.|...|+|...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34556667765 48999999999999 999999999999999999864
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0088 Score=44.90 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCC
Q 017595 28 YSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAG 106 (369)
Q Consensus 28 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 106 (369)
...+.+.+.+.|...+| ..|.. ++.++.+|++.+ |+ ++..+.+.|+.|...|+|.....+..
T Consensus 15 ~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 15 VRKSMQIFAGKWTLLII---------FQINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp HHHHHHHHTSSSHHHHH---------HHHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred HHHHHHHHcCccHHHHH---------HHHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 45555666666655443 34443 489999999999 49 99999999999999999987532211
Q ss_pred CCCcceecChhchhhh
Q 017595 107 DNQRLYSLAPVAKYFV 122 (369)
Q Consensus 107 ~~~~~y~~t~~~~~~~ 122 (369)
.....|.+|+.+..+.
T Consensus 78 ~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 78 PPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SCEEEEEECHHHHTTH
T ss_pred CCeeEEEECccHHHHH
Confidence 1124699999887654
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.023 Score=44.13 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=42.2
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
++..|....++++.|+.+||+.+++ ++..+.++|+.|...|+|.... ...+.|.++..
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~----g~~ggy~L~~~ 71 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR----GAYGGYVLGSE 71 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC----CCCCceEeCCC
Confidence 4444544211258999999999999 9999999999999999998641 02366877654
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0087 Score=52.11 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYF 121 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~ 121 (369)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++. +.++|++++....+
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~-----~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG-----PAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG-----GGCEEEECSHHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC-----CCCeEEECHHHHHH
Confidence 45778887642 37999999999999 9999999999999999999752 24789998765444
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.058 Score=42.74 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=48.3
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc--cCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL--SSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~--~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..| .. ++.|..+||+.+++ ++..+.++++.|...|+|.... .+.......+.+|+.+..++.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 44588888 54 48999999999999 9999999999999999998621 110111235677777776553
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.013 Score=46.75 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=44.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
|+.+..+|++.+++ .+..+.+.|+.|...|+|+....+... ...|.+|+.+..+.
T Consensus 36 g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 48999999999999 999999999999999999875322112 34789998876554
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.019 Score=44.76 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=52.1
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.|+.|...|++.....+.+.....+.+|+.+..+..
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 466678888775 48999999999999 9999999999999999998743221111234778887776553
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0092 Score=46.04 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-.++.|+..|.. ++.++.+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 46 ~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 346678888865 48999999999999 999999999999999999864
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.012 Score=46.01 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCC
Q 017595 28 YSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAG 106 (369)
Q Consensus 28 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 106 (369)
...+.+++.+.|... |+..|.. |+.++.+|++.+ |+ .+..+.+.|+.|...|+|.....+..
T Consensus 25 ~~~~l~~l~~~w~l~---------IL~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d 87 (131)
T 1yyv_A 25 SREVLKHVTSRWGVL---------ILVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVV 87 (131)
T ss_dssp HHHHHHHHHSHHHHH---------HHHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred HHHHHHHHcCCcHHH---------HHHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCC
Confidence 444555555555543 3444543 489999999999 79 99999999999999999987432211
Q ss_pred CCCcceecChhchhhhc
Q 017595 107 DNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 107 ~~~~~y~~t~~~~~~~~ 123 (369)
.....|.+|+.+..+..
T Consensus 88 ~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp SCEEEEEECHHHHHHHH
T ss_pred CCeEEEEECccHHHHHH
Confidence 11236999998876553
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.015 Score=40.88 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=39.1
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|.+.|.+. |.+++.|||+.+++ .+.-++|-|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 67788775 59999999999999 999999999999999999874
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.014 Score=41.82 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=39.6
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|.+.|... |.+++.+||+.+++ .+.-++|.|+.|...|++.+.
T Consensus 6 ~Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 367788775 59999999999999 999999999999999999875
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.064 Score=41.79 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=53.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.|+.|+..|++.....+.+.....|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456688888775 48999999999999 999999999999999999875322111234688898888776
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.013 Score=41.36 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=46.4
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
.....|++.|... +.|+.+||+.+|+ ....+.+.|..|...|+|.... ..+-.|+++...
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~----~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD----DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS----SSSCEEESCC--
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC----CCCCcceeccCc
Confidence 3455678888863 4999999999999 9999999999999999998741 134567766543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.064 Score=52.27 Aligned_cols=107 Identities=10% Similarity=0.053 Sum_probs=67.6
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhC-------------CCCeEEEcch-hHHHHhCCC------CCCceEEeC
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-------------PHIEGVNFDL-PHVIQNAPS------YRGVKHIGG 256 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~ 256 (369)
+.+.+. .....+|+|-+||+|.++....+.. ....+.|+|. +.+...++- .+.-.+..+
T Consensus 209 mv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~ 287 (530)
T 3ufb_A 209 MVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPE 287 (530)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECS
T ss_pred HHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccccc
Confidence 333343 3455699999999999998876542 1346788887 655554431 234467788
Q ss_pred CCCC-CCC------CCCEEEecccccc---------C-----ChhHHHHHHHHHHHhCC-------CCCEEEEEec
Q 017595 257 NMFE-RIP------KGDAILMKWILHN---------W-----DDEHCLTLLKNCYEAIP-------ENGKIIIIDR 304 (369)
Q Consensus 257 d~~~-~~p------~~D~v~~~~vlh~---------~-----~d~~~~~~L~~~~~~L~-------pgG~lli~e~ 304 (369)
|.+. +.. ..|+|+.+--+-. + ..+....+++.+.+.|+ |||++.++-+
T Consensus 288 dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 288 NSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp CTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 8775 321 1399998765521 1 01122356788888887 6999888754
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.024 Score=45.77 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=53.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 47 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 47 PQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 456688888875 48999999999999 9999999999999999998753221111235788888876654
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.037 Score=43.53 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=53.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..+..
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 467788888765 47999999999999 9999999999999999998743211111235888888876653
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.024 Score=44.67 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=52.4
Q ss_pred HHHhChhHHHHh-cCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAK-AGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~-~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|.. . ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..++.
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 456778888876 4 48999999999999 9999999999999999998752211111234778887776554
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.041 Score=42.79 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=51.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.....+.+.....+.+|+.+..+..
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 355677777764 48999999999999 9999999999999999998743221111234778888776654
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.014 Score=42.90 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=50.4
Q ss_pred HhChhHHHHhcCCCCCCCHHHH----HHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQI----AAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~L----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|... ++.|..+| |+.+++ ++..+.++|+.|...|++.....+ ....|.+|+.+..++.
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHHH
Confidence 45567777664 48999999 999999 999999999999999999874211 2346788888876654
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.016 Score=45.88 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=51.2
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.......+.+|+.+..+..
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 3566788888775 48999999999999 9999999999999999998753221111345778877776553
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.055 Score=48.50 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=71.9
Q ss_pred CcceEEEEcCChhHHHHH----HHHhCCCCe--EEEcch-h------------HHHH----hCCC--CCC--ceEEeCCC
Q 017595 206 QIKQLVDVGGGLGVTLNI----ITSRYPHIE--GVNFDL-P------------HVIQ----NAPS--YRG--VKHIGGNM 258 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~----l~~~~p~~~--~~~~D~-~------------~~~~----~a~~--~~r--v~~~~~d~ 258 (369)
..-+|||+|=|+|..... +.+..|+.+ ++.++. | ...+ .... ..+ +++.-||+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 457899999999975433 334577765 454442 1 0000 0000 023 46677887
Q ss_pred CC---CCCC--CCEEEeccccccC-ChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 259 FE---RIPK--GDAILMKWILHNW-DDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 259 ~~---~~p~--~D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
.+ .++. .|++++-..=-.- |+=-...++++++++++|||.+.-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 65 2333 2888764311000 11112478999999999999776311
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEecCceeEEEE
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFVCNFCIIEF 367 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 367 (369)
....++.-|++|||++.++-..+..--++.+
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred ----CcHHHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 1234677889999998877655544334433
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0053 Score=54.17 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=48.3
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+.|++.|...+ +++|+.|||+++|+ +..-+.|+|+.|+..|++.++. +.+.|++++..-.
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~-----~~~~Y~lG~~~~~ 68 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE-----GARSYRLGPQVLR 68 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS-----SSSEEEECTTHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC-----CCCcEEcCHHHHH
Confidence 35677776532 48999999999999 9999999999999999999852 3378999875443
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.052 Score=43.11 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=52.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc--cccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC--SLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.. ...+.+.....+.+|+.+..+..
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 456678888775 48999999999999 99999999999999999987 32211111235788888776554
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.041 Score=48.60 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=59.7
Q ss_pred CCcceEEEEcC------ChhHHHHHHHHhCCC-CeEEEcchhHHHHhCCCCCCceEEeCCCCC-CCCCC-CEEEeccccc
Q 017595 205 EQIKQLVDVGG------GLGVTLNIITSRYPH-IEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RIPKG-DAILMKWILH 275 (369)
Q Consensus 205 ~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh 275 (369)
+-..+|||+|+ -.|.+ .+.+..|. ..++.+|+.++... .. .++.||+.+ ..+.. |+|++-..=-
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sd----a~-~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSD----AD-STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCS----SS-EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccC----CC-eEEEccccccccCCCCCEEEecCCCC
Confidence 46689999996 67774 33344776 69999998443321 12 558999766 23233 8887543211
Q ss_pred -------cC--ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 276 -------NW--DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 276 -------~~--~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.- ...-++.+|.=+.+.|+|||.+++--
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 10 12247778888899999999999753
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.018 Score=42.23 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=43.8
Q ss_pred CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 65 LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 65 ~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.+..+||..+|+ +++.++..++.|...|++... .+.|.+|+.+..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~-------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE-------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999974 456999999997764
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=45.92 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 4466678888765 48999999999999 9999999999999999998743221112245788888776654
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.022 Score=44.87 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=44.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.|+.+||+.+++ ++..+.+.|+.|...|+|... ....|.+|+.+..+..
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~------~~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE------KYRGLVLTSKGKKIGK 71 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE------TTTEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe------eCceEEEchhHHHHHH
Confidence 48999999999999 999999999999999999874 3467999988876553
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.03 Score=44.70 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=53.1
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 4567788888775 48999999999999 9999999999999999998743211111234778877776553
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.051 Score=43.62 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=50.1
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|.....+.+.....|.+|+.+..++.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 456678888775 48999999999999 9999999999999999998742111111245777877776553
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.032 Score=45.32 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=51.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.|+..|...+ ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 53 ~~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 53 QTHWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 34667788887632 47999999999999 9999999999999999998753211111235778887776654
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.048 Score=42.81 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=51.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|. . ++.|..+||+.+++ ++..+.+.|+.|+..|+|.....+.+.....+.+|+.+..++.
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 4666777777 4 48999999999999 9999999999999999998753221111234778877776553
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.03 Score=43.87 Aligned_cols=70 Identities=7% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|.....+.+.....+.+|+.+..+..
T Consensus 37 ~~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 37 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 3466778888775 48999999999999 9999999999999999998753221111235778887776553
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.082 Score=41.30 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..+..
T Consensus 37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 345566666654 48999999999999 9999999999999999998753221111235788888876654
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.078 Score=42.58 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=52.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 355678888775 48999999999999 9999999999999999998753221112245788888876654
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=45.10 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=51.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|.....+.+.....|.+|+.+..+..
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 466788888765 48999999999999 9999999999999999998742110001124778877765553
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.089 Score=41.48 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=44.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 42 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 42 QQGRMIGYIYENQ-ESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHHT-TTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 3456777776642 148999999999999 9999999999999999998753211111235677777776553
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.027 Score=44.96 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=50.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++|+.|+..|+|.....+.+.....+.+|+.+..++.
T Consensus 44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 456677777664 48999999999999 9999999999999999998742111111235778888776554
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.085 Score=42.21 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=50.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 52 q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 52 QFPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp THHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 34567777665 48999999999999 9999999999999999998753221111235778887776654
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.013 Score=51.70 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=45.7
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++..+ ..++|++++...
T Consensus 27 ~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~------~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 27 DLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR------ADGSYSLGPEML 83 (260)
T ss_dssp HHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC------TTSCEEECHHHH
T ss_pred HHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC------CCCeEEecHHHH
Confidence 4566665321 48999999999999 999999999999999999975 233899987543
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.023 Score=49.40 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=52.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.|+..|... ++.|+.+||+.+|+ ++.-+.|.|+.|...|++.... ....|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~-----r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG-----KDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET-----TTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC-----CccEEEECHHHHHHHH
Confidence 455677777654 48999999999999 9999999999999999998751 3467999998887653
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.027 Score=44.72 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=52.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 41 GQRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHH
Confidence 356678888775 48999999999999 9999999999999999998753221111235778877776553
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.027 Score=44.58 Aligned_cols=69 Identities=6% Similarity=0.062 Sum_probs=51.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|.....+.+.....+.+|+.+..++.
T Consensus 43 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 43 PQFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 356677888765 48999999999999 9999999999999999998743211111234778877776553
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.03 Score=43.97 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred HhChhHHH-HhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 49 ELGVFEII-AKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 49 ~lglfd~L-~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++.++..| ... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 55677777 543 58999999999999 999999999999999999875321111123467777766554
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.066 Score=42.01 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=51.8
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|.....+.....-.+.+|+.+..+..
T Consensus 37 ~~~~~iL~~l~~~---~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 37 YLDFSILKATSEE---PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHHS---CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 3467788888875 25 99999999999 9999999999999999998753210000125888888776654
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=94.31 E-value=0.027 Score=43.51 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=51.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|..+||+.+++ ++..+.++|+.|+..|+|.....+.......+.+|+.+..++.
T Consensus 38 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 38 EEFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3566777776641 148999999999999 9999999999999999998743221112235778887776554
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.029 Score=44.06 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=51.3
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.....+.+.....+.+|+.+..+..
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 45577777775 48999999999999 9999999999999999998753221111234778887776553
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.025 Score=44.88 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=49.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|...+ +++|..+||+.+++ ++..+.++++.|+..|+|.....+.....-.+.+|+.+..++.
T Consensus 39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 34666777886542 47899999999999 9999999999999999998742211011124778887776654
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.099 Score=42.33 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=52.8
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 45 ~~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 45 IPQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 3466778888775 48999999999999 9999999999999999998743221111234778887776553
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.057 Score=42.77 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|+++||+.+++ ++..++++|..|...|+|.... | ..|.|+++....
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r---G-~~GGy~Lar~p~ 75 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR---G-AKGGYQLRVPAE 75 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS---S-SSSEEEESSCGG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC---C-CCCCeeecCCcc
Confidence 48999999999999 9999999999999999998541 1 246788775443
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.043 Score=44.35 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
++.|+++||+.+++ ++..++++|..|...|+|.... | ..|.|.++..
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r---G-~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR---G-AHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---S-TTCEEEECSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec---C-CCCceEecCC
Confidence 48999999999999 9999999999999999998642 1 2466887643
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.021 Score=42.38 Aligned_cols=47 Identities=11% Similarity=0.350 Sum_probs=40.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.|+..|... ++.|+.+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777664 48999999999999 999999999999999999874
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.029 Score=45.11 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.|+..|... ++.|..+||+.+++ ++..+.++|+.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 52 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 121 (162)
T 3cjn_A 52 TAKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD 121 (162)
T ss_dssp HHHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3466788888775 48999999999999 9999999999999999998743211112235778877775553
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.027 Score=43.97 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|.....+.+.....+.+|+.+..++.
T Consensus 32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHST-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 4566778887652 138999999999999 9999999999999999998753221111235778887776654
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.13 Score=40.75 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=50.8
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 45577888764 48999999999999 9999999999999999998753211111235777777765553
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.019 Score=50.42 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=49.0
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~-------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS-------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-------CCEEEEcHHHHHHH
Confidence 35667775432 48999999999999 999999999999999999974 47899998765444
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.044 Score=42.78 Aligned_cols=71 Identities=8% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 35 TQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 3556777787742 127999999999999 9999999999999999998753221111235777877765543
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.021 Score=42.13 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=44.5
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
--.++.|+..|... ++.++.+||+.+|+ .+..+.+.|+.|... ++..... | ....|++++.
T Consensus 26 ~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~--g-r~~~y~l~~~ 86 (99)
T 2zkz_A 26 HPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQ--G-LEIYYSINNP 86 (99)
T ss_dssp SHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEE--T-TEEEEECCCH
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEe--C-cEEEEEEChH
Confidence 34566677554433 48999999999999 999999999999999 9875421 1 1235777654
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.031 Score=44.08 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=53.1
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 466677888765 48999999999999 9999999999999999998753221112235788888887665
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.021 Score=45.42 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
..++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.+.....+.+|+.+..++
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 3467778888775 48999999999999 999999999999999999875321111123577887777654
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.035 Score=43.68 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=49.2
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.|+..|... +.|..+||+.+++ ++..+.++|+.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~ 106 (146)
T 3tgn_A 38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAE 106 (146)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHH
Confidence 4566778888763 4999999999999 9999999999999999998743211112245777777765553
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.032 Score=44.37 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++|+.|+..|+|.....+.......+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 456678888775 48999999999999 9999999999999999998742211111235788888886665
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.068 Score=42.51 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=52.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCCcccHHHHHHHHhcCccccccccCC-----CCCCcceecChhchhh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMP-SRNPNTGVMLDRILRLLVTNRVLRCSLSSA-----GDNQRLYSLAPVAKYF 121 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-----~~~~~~y~~t~~~~~~ 121 (369)
.++.|+..|...+ .+..|+++|++.++ + ...-+.+.|+.|+..|+|.....+. +.....|.+|+.+...
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 4566777776532 24689999999998 8 9999999999999999998642221 1122379999999966
Q ss_pred hc
Q 017595 122 VL 123 (369)
Q Consensus 122 ~~ 123 (369)
+.
T Consensus 105 l~ 106 (151)
T 3u1d_A 105 LR 106 (151)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.024 Score=44.09 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=50.7
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 355677778775 48999999999999 9999999999999999998742110001123677777765553
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.017 Score=50.93 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=46.8
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++ ++.|++++...
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~-------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD-------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES-------SSEEEECGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-------CCEEEEcHHHH
Confidence 35667775432 48999999999999 999999999999999999974 47899987643
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.023 Score=44.43 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.......+.+|+.+..+..
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 466778888775 48999999999999 9999999999999999998742210001124777777776553
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.025 Score=44.43 Aligned_cols=70 Identities=7% Similarity=0.109 Sum_probs=52.1
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.....+.+.....|.+|+.+..+..
T Consensus 33 ~~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 33 PAQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 3466778888765 48999999999999 9999999999999999998742210001124778887776553
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.031 Score=39.61 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQM-----PSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|++.|...+ +++.|++||++.+ ++ +..-+.|.|+.|+..|+|...
T Consensus 18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 4566888887531 0389999999999 88 999999999999999999875
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.062 Score=39.07 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=50.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHH-hCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAA-QMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.|+-.|... ++.|+.+||+ .+++ +..-+.|-++.|...|+|+.+ +++ ..+|+.+..++.
T Consensus 17 ~QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~------~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 17 KTATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS------GDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE------TTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC------CCC-eeeCHhHHHHHH
Confidence 355677778776 3899999999 9999 999999999999999999832 233 888988887664
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.044 Score=43.88 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=49.8
Q ss_pred HHhChhHHHH-hcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIA-KAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~-~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|. .. ++.|..+||+.+++ ++..+.++++.|+..|+|.....+.+.....+.+|+.+..+..
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 4667888884 43 48999999999999 9999999999999999998742211111234778877776553
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.06 Score=39.34 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 62 GAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 62 ~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+++.+..+||+.+++ +...|.|.|..|...|+|.....++ ..+...+|+.+..++
T Consensus 34 g~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D--~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEAD--GRGHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTT--SCEEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCC--CceeEEECHHHHHHH
Confidence 358999999999999 9999999999999999998754322 234567777777554
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.076 Score=42.34 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=50.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|...+ ++.+..+||+.+++ ++..+.++++-|+..|+|.....+.........+|+.+..++.
T Consensus 33 q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 445666776543 36788999999999 9999999999999999998753221111235778888876654
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.036 Score=40.38 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=47.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCccc-HHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVM-LDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++..|...+ .+.|..+||+.+++ ++.. +.+.|+.|+..|+|..+..+ .....+.+|+.+..+..
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~d--rR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLS--YRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEE--TTEEEEEECHHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCC--CCeEEEEECHhHHHHHH
Confidence 455565542 27999999999999 9999 99999999999999843211 11235788888776553
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=93.22 E-value=0.089 Score=42.60 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=40.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
+++|.++||+.+++ ++..+.++|..|...|+|.... ...|.|+++....
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r----G~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV----GKNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC----STTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec----CCCCCeEecCChh
Confidence 48999999999999 9999999999999999997642 1345688876543
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.065 Score=44.50 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=55.3
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+..++.++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|.....+.......+.+|+.+..++.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 455777888887521 148999999999999 9999999999999999998753221112245889988886654
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.043 Score=42.24 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred HHhChhHHHHhcCCCCC-CCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAK-LSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~-~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|+..|...+ +| .|+.+||+.+++ +..-+.|.|+.|...|+|...
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3566778887653 35 899999999999 999999999999999999864
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.058 Score=44.34 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=50.4
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.|+..|...++.++.|..+||+.+++ ++..+.++|+.|+..|+|.....+.......+.+|+.+..++.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 36667888877531013999999999999 9999999999999999998742211111234777777775553
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.054 Score=41.21 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=40.7
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-.++.|+..|.+ ++.|+.+||+.+++ .+..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 346677778876 37999999999999 999999999999999999764
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.08 Score=41.34 Aligned_cols=49 Identities=6% Similarity=-0.037 Sum_probs=42.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++.|..+||+.+++ ++..+.+.|+.|...|+|... .+.|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~-------~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK-------EDGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec-------CCeEEEChhHHHHH
Confidence 48999999999999 999999999999999999874 26788888776544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.12 Score=46.36 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS 247 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 247 (369)
+..++..+. .....|||++||+|.++.+++... .+++++|+ +..++.+++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 445555443 355799999999999999988764 58999998 777766543
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=92.69 E-value=0.062 Score=42.87 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++.|+.+||+.+++ ++..++++|..|...|+|.... +.|.|.++....
T Consensus 29 ~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r-----G~GGy~L~~~p~ 76 (149)
T 1ylf_A 29 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-----GPGGAGLLKDLH 76 (149)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CCEEESSCGG
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc-----CCCceEeCCChh
Confidence 48999999999999 9999999999999999998642 256788776543
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.094 Score=44.14 Aligned_cols=70 Identities=9% Similarity=0.186 Sum_probs=52.2
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC--CCCCcceecChhch
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA--GDNQRLYSLAPVAK 119 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~y~~t~~~~ 119 (369)
.+|..-.++.|+..|.. +|.|+.+||+.+|+ ++..+.+.|+.|...|+|....... +.....|++|+...
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 34444566777777865 48999999999999 9999999999999999998743210 11234688877654
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.16 Score=40.43 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=45.3
Q ss_pred hHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 53 FEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 53 fd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
...|... ++.|..+||+.+++ ++..+.+.|+.|...|+|... .+..+.+|+.+..+.
T Consensus 46 ~~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~------~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 46 SDLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI------PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE------TTTEEEECHHHHHHH
T ss_pred HHHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe------cCCceEEChhHHHHH
Confidence 3355443 37899999999999 999999999999999999864 235678887776554
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.24 Score=37.60 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHHHHhChhHHHHhcCCCCCCCHHHHHHhCC--------CCCCCCc-ccHHHHHHHHhcCccccccccC-CCCCCccee
Q 017595 44 MQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP--------SRNPNTG-VMLDRILRLLVTNRVLRCSLSS-AGDNQRLYS 113 (369)
Q Consensus 44 l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~-~~~~~~~y~ 113 (369)
+....++-|+..|.. +|.+.-+|++.++ + .+ ..+.+.|+-|...|+|.....+ .+.....|.
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~ 81 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYR 81 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence 444566777888876 4899999999873 6 78 8999999999999999865321 112234699
Q ss_pred cChhchhhhc
Q 017595 114 LAPVAKYFVL 123 (369)
Q Consensus 114 ~t~~~~~~~~ 123 (369)
+|+.+...+.
T Consensus 82 LT~~G~~~l~ 91 (118)
T 2esh_A 82 ITPQGKLYLR 91 (118)
T ss_dssp ECHHHHHHHH
T ss_pred EChHHHHHHH
Confidence 9998886553
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.089 Score=36.15 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=45.6
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
-.|++.|.+.| .|++..+||+.+|+ +..-+...|..|-..|.|..+ ..-+|.++
T Consensus 22 ekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP------kRCyw~~~ 75 (80)
T 2lnb_A 22 QRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT------SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE------ETTEEEES
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC------CCceeeCC
Confidence 35677777764 69999999999999 999999999999999999865 35678776
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=92.05 E-value=0.078 Score=38.57 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+.|..+||+.+++ ++..+.++|+.|...|+|... .+ + ....|.+|+.+..+..
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d-~-R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LE-G-RTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EE-T-TEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CC-C-CeEEEEEChhHHHHHH
Confidence 4899999999999 999999999999999999321 11 0 1235889988876653
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.055 Score=42.95 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=48.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|...+ +++.|..+||+.+++ ++..+.++++-|+..|+|.....+.........+|+.+..++.
T Consensus 37 q~~vL~~L~~~~-~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 37 RYEALVLLTFSK-SGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHHHHTSG-GGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 334555554321 247999999999999 9999999999999999998753221111234777887776553
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.93 E-value=0.077 Score=44.83 Aligned_cols=69 Identities=14% Similarity=-0.021 Sum_probs=51.6
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.|+..|... ++.|..+||+.+++ ++..+.++|+.|+..|+|.....+.....-.+.+|+.+..++.
T Consensus 49 ~q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 49 NEHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 356677888765 48999999999999 9999999999999999998753221111236788888876654
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.048 Score=46.98 Aligned_cols=71 Identities=7% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCC---CCCCcceecChh
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSA---GDNQRLYSLAPV 117 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~---~~~~~~y~~t~~ 117 (369)
..+|..-.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|....... |.....|++++.
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 344555567788888875 48999999999999 9999999999999999998621110 001235888876
Q ss_pred ch
Q 017595 118 AK 119 (369)
Q Consensus 118 ~~ 119 (369)
+.
T Consensus 78 ~~ 79 (232)
T 2qlz_A 78 KS 79 (232)
T ss_dssp EE
T ss_pred hh
Confidence 54
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=91.02 E-value=0.22 Score=35.95 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=39.9
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.|+..|...+. .+++..+|+.++++ +..-+.++|+.|...|+|...
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4557777776321 27999999999999 999999999999999999854
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.13 Score=40.79 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=41.1
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 456788888775 48999999999999 99999999999999999985
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=90.93 E-value=0.12 Score=38.66 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=39.0
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.|+..|...| .+.|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455677764432 37999999999999 999999999999999999764
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=90.88 E-value=0.15 Score=40.41 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=41.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456788888775 58999999999999 999999999999999999753
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=90.88 E-value=0.19 Score=39.68 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=38.9
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchh
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKY 120 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~ 120 (369)
+ |+++||+..++ ++..++++|..|...|+|.... +.|.|+++.....
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-----G~GGy~Lar~p~~ 70 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-----GVPGASLKKDPAD 70 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-----SSSSCEESSCGGG
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-----CCCCceecCCHHH
Confidence 5 99999999999 9999999999999999998642 2466777755443
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.099 Score=42.26 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|.....+.....-.+.+|+.+..++.
T Consensus 47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVH-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 4666777887641 138999999999999 9999999999999999998753210000124778877776554
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.17 Score=39.82 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=40.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|++.|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 6 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 355688888875 58999999999999 99999999999999999985
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.21 Score=41.66 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=43.8
Q ss_pred HHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 43 SMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 43 ~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++....+..|+..|.. ++.|..+||+.+|+ .+..+.+.|+.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3344567788888874 48999999999999 999999999999999999864
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=89.98 E-value=0.2 Score=40.33 Aligned_cols=46 Identities=11% Similarity=0.293 Sum_probs=40.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|++.|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 455688888875 58999999999999 99999999999999999985
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=89.86 E-value=0.22 Score=42.28 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.+..+||+.+++ ++..+.+.|+.|...|+|... ....+.+|+.++.+..
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~------~~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD------KKAGYLLTDLGLKLVS 69 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTTEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe------cCCCeEECHHHHHHHH
Confidence 58999999999999 999999999999999999875 3367889988886654
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.089 Score=43.49 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=50.4
Q ss_pred HHHHHHhChhHHHHhcCCCCCCCHHHHHHhCC-CCCCCCcccHHHHHHHHhcCccccccccC--CCCCCcceecChhchh
Q 017595 44 MQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP-SRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLYSLAPVAKY 120 (369)
Q Consensus 44 l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~~ 120 (369)
|.-=.++.|+..|.. ++.|+.+|++.++ + ....+.+.|+.|...|+|+...+. .+.....|++++.+..
T Consensus 20 La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 20 LHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp TTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 333467788888876 5899999999996 8 888999999999999999764321 0111246887765543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=1.6 Score=39.19 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=55.4
Q ss_pred cceEEEEcCCh-h-HHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCCCEEEeccccccCChhHH
Q 017595 207 IKQLVDVGGGL-G-VTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKGDAILMKWILHNWDDEHC 282 (369)
Q Consensus 207 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~ 282 (369)
..+|.=||+|. | .++..+.+.....+++++|. +..++.+.+..-+.-...|..+ .....|+|+++- |....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999884 3 45556666554347888898 6565554433222222333332 233459988763 44556
Q ss_pred HHHHHHHHHhCCCCCEEE
Q 017595 283 LTLLKNCYEAIPENGKII 300 (369)
Q Consensus 283 ~~~L~~~~~~L~pgG~ll 300 (369)
..+++++...|+||..++
T Consensus 108 ~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHhhccCCCcEEE
Confidence 788999999999987544
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.55 E-value=0.18 Score=32.37 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=40.9
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
+..|++.|..+| |-+.++.+++.+|. +.+.+-..|+-|.+-|++..
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445788998875 78999999999999 99999999999999999874
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=89.53 E-value=0.19 Score=39.96 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=40.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|++.|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 455788888875 58999999999999 99999999999999999975
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=89.53 E-value=0.14 Score=37.62 Aligned_cols=51 Identities=25% Similarity=0.274 Sum_probs=40.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.|+..|-+. ++.|+.||++.++...+..+.-+.++|+-|+..|+|...
T Consensus 36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 456678888764 489999999999751111578899999999999999875
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=0.45 Score=41.49 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=63.4
Q ss_pred CcceEEEEcCChhHHHHHHHHh-------CCCCeEEEcch----hHH----------------------------HH---
Q 017595 206 QIKQLVDVGGGLGVTLNIITSR-------YPHIEGVNFDL----PHV----------------------------IQ--- 243 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~----------------------------~~--- 243 (369)
-++.|+|+|+-.|..+..++.. .++-+++++|. |.. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3479999999999887776542 46678888882 211 00
Q ss_pred hCCC----CCCceEEeCCCCCCC-------CCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 244 NAPS----YRGVKHIGGNMFERI-------PKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 244 ~a~~----~~rv~~~~~d~~~~~-------p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..+. .++|+++.|++.+.+ |.. |++++-.=. . +.....|+.+...|+|||.+++-|.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y--~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y--EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H--HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c--chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0111 268999999997632 322 777665532 2 4456789999999999998776554
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.24 Score=39.23 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 456788888875 58999999999999 99999999999999999975
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.43 Score=36.16 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=54.6
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC------CCCCCCCcccHHHHHHHHhcCccccccccC--CCCCCccee
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM------PSRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLYS 113 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y~ 113 (369)
++++-.+++-|+-.|.. +|.+.-+|++.+ ++ ++..+...|+-|...|+|...... .+.....|+
T Consensus 6 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred HHHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 44555566667777876 489999999887 67 899999999999999999875321 122234699
Q ss_pred cChhchhhhc
Q 017595 114 LAPVAKYFVL 123 (369)
Q Consensus 114 ~t~~~~~~~~ 123 (369)
+|+.++..+.
T Consensus 78 LT~~G~~~l~ 87 (117)
T 4esf_A 78 LNEAGRQELE 87 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999986654
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.20 E-value=0.22 Score=40.13 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=41.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|++.|.+. +++|..+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 456788999875 59999999999999 99999999999999999984
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=89.09 E-value=0.14 Score=35.95 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=39.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.++.|++.|... ++.|+.+|++.++...+..+.-+.++|+.|+..|+|...
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 456677888764 489999999998620001788999999999999999875
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.2 Score=39.62 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=42.7
Q ss_pred HhChhHHHHhcC--CCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAG--PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~--~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|...+ .++++|..+||+.+++ ++..+.++++-|+..|+|....+.|+ ......+|+.+..++.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~~Dr-R~~~v~LT~~G~~~~~ 106 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAGADA-RCKRIELTAKGRAALQ 106 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCC-CeeEEEECHHHHHHHH
Confidence 445566665432 1246899999999999 99999999999999999954321111 1234677777775553
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=88.95 E-value=0.22 Score=39.61 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 355688888875 58999999999999 99999999999999999985
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=88.69 E-value=0.24 Score=38.74 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=39.7
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 45677888764 48999999999999 99999999999999999975
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=88.57 E-value=0.29 Score=42.60 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=52.1
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|..+||+.+++ ++..+.++++-|...|+|.+...+.....-...+|+.+..++.
T Consensus 159 ~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 159 VEFTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 4566778887643 125999999999999 9999999999999999998754321111234677777776553
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=0.41 Score=37.78 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQM-----PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+-.+.-|++.|...+ ++.|+++|.+.+ ++ +..-+.|.|+.|+..|++.+...++ +..+|..+
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGD--ASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTT--SCCEEEEC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCC--CceEEECC
Confidence 345667899997642 589999999998 56 8889999999999999998753221 23467754
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.57 Score=35.39 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCCcccHHHHHHHHhcCcccccccc--CCCCCCc
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM--------PSRNPNTGVMLDRILRLLVTNRVLRCSLS--SAGDNQR 110 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~--~~~~~~~ 110 (369)
.+.++-.+++-|+..|.. +|.+--+|++.+ ++ ++..+.+.|+-|...|+|..... +.+....
T Consensus 6 ~~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk 77 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRK 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEE
T ss_pred HHHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCce
Confidence 345555667777888877 488999998876 56 88999999999999999986421 1122234
Q ss_pred ceecChhchhhhc
Q 017595 111 LYSLAPVAKYFVL 123 (369)
Q Consensus 111 ~y~~t~~~~~~~~ 123 (369)
.|++|+.++..+.
T Consensus 78 ~Y~LT~~G~~~l~ 90 (116)
T 3f8b_A 78 YYRLTEIGHENMR 90 (116)
T ss_dssp EEEECHHHHHHHH
T ss_pred EEEECHHHHHHHH
Confidence 6999999886654
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.29 Score=39.83 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 455678888875 58999999999999 99999999999999999974
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=88.19 E-value=0.27 Score=36.11 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.|..+||+.+|+ +..-+.+.|+.|...|++...
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 48999999999999 999999999999999999875
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=88.18 E-value=0.86 Score=40.17 Aligned_cols=97 Identities=9% Similarity=-0.069 Sum_probs=68.0
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCCC----CC---CCCEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFER----IP---KGDAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~----~p---~~D~v~~~~vl 274 (369)
...+||+=+|+|.++.+++.. .-+++.+|. +...+..++ .++++++..|.+.. .| ..|+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 467899999999999999984 367888888 766655443 36799999997651 22 23999987765
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCEEEEEeccCC
Q 017595 275 HNWDDEHCLTLLKNCYE--AIPENGKIIIIDRMPM 307 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~--~L~pgG~lli~e~~~~ 307 (369)
..- .+..++++.+.+ .+.|+|.++|-=++..
T Consensus 170 e~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CST--THHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 422 344556655555 3468898888766643
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.04 E-value=0.34 Score=37.49 Aligned_cols=61 Identities=8% Similarity=0.129 Sum_probs=47.4
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceec
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQM-----PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSL 114 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~ 114 (369)
|-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ +..+|..
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~--~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDT--GESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTT--SCEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCC--CceEEEe
Confidence 556778899997642 589999999998 66 8889999999999999998753221 2346765
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=87.81 E-value=0.31 Score=36.96 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCC------CCCCCCcccHHHHHHHHhcCcccccccc--CCCCCCccee
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMP------SRNPNTGVMLDRILRLLVTNRVLRCSLS--SAGDNQRLYS 113 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~--~~~~~~~~y~ 113 (369)
++++-.+++-|+..|.. +|.+.-+|++.++ + .+..+...|+-|...|+|..... +.+.....|+
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 45555667777888876 4899999998876 6 77899999999999999986432 1112234799
Q ss_pred cChhchhhhc
Q 017595 114 LAPVAKYFVL 123 (369)
Q Consensus 114 ~t~~~~~~~~ 123 (369)
+|+.++..+.
T Consensus 81 lT~~G~~~l~ 90 (117)
T 3elk_A 81 ITDAGKKFLC 90 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999986654
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=87.64 E-value=0.95 Score=31.08 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=32.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..|+.+||.++|+ ...-+.|.|.-|...|+|...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 45999999999999 889999999999999999875
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=87.07 E-value=0.42 Score=36.83 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..|.++||+.+++ ++.-+.+.|+.|...|+|...
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999874
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=87.03 E-value=1.1 Score=33.90 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=54.8
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC------CCCCCCCcccHHHHHHHHhcCccccccccC--CCCCCcce
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM------PSRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLY 112 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y 112 (369)
.++++-.+++-|+..|.. +|.+--+|++.+ ++ ++..+...|+-|...|+|...... .+.....|
T Consensus 7 ~~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y 78 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFY 78 (116)
T ss_dssp HHHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEE
T ss_pred HHHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEE
Confidence 344555566667777876 489999999887 56 889999999999999999864321 11223469
Q ss_pred ecChhchhhhc
Q 017595 113 SLAPVAKYFVL 123 (369)
Q Consensus 113 ~~t~~~~~~~~ 123 (369)
++|+.++..+.
T Consensus 79 ~lT~~G~~~l~ 89 (116)
T 3hhh_A 79 RLTSSGEAELA 89 (116)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99999986654
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.93 E-value=0.82 Score=29.27 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=37.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
.++|+.|+|+.+++ .-...+.-|+.|-+.|-+.+- ..+|++.|--
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR-------sSRYrlkphl 61 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR-------SSRYRLKPHL 61 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------CCEEEECC--
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh-------ccccccCcch
Confidence 48999999999999 888888899999999999873 5788887643
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.42 E-value=0.46 Score=39.56 Aligned_cols=35 Identities=17% Similarity=-0.067 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|.|..|||+.+|+ ....+.+.|+.|...|++...
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 38999999999999 777899999999999999864
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=86.25 E-value=0.34 Score=37.84 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=38.0
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..++..|.... ++.|+.+||+.+|+ ++..+.++|+.|...|+|...
T Consensus 29 ~~il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 29 GAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34566664211 48999999999999 999999999999999999874
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=86.11 E-value=0.33 Score=38.40 Aligned_cols=72 Identities=10% Similarity=0.194 Sum_probs=51.7
Q ss_pred HHHHHHhChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCCcccHHHHHHHHhcCccccccccC--CCCCCccee
Q 017595 44 MQAAAELGVFEIIAKAGPGAKLSAAQIAAQM--------PSRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLYS 113 (369)
Q Consensus 44 l~~a~~lglfd~L~~~~~~~~~t~~~La~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y~ 113 (369)
+.--.++-|+..|.. +|.+.-+|++.+ ++ .+..+.+.|+-|...|+|...... .+.....|.
T Consensus 38 ~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 38 IRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp GGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred hcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 333456667777766 488988888877 57 899999999999999999764221 111234699
Q ss_pred cChhchhhhc
Q 017595 114 LAPVAKYFVL 123 (369)
Q Consensus 114 ~t~~~~~~~~ 123 (369)
+|+.++.++.
T Consensus 110 LT~~G~~~l~ 119 (145)
T 1xma_A 110 ITPEGIKYYK 119 (145)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998886653
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=85.84 E-value=0.48 Score=45.33 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=50.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++.++..|.+.+ ++++|..+||+.+++ ++..+.|+|+-|+..|+|.+...+..+..-...+|+.++.++
T Consensus 406 q~~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 406 EIYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 566777887641 248999999999999 999999999999999999875322111123466777666544
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=85.75 E-value=3.5 Score=38.08 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-------CCCCeEEEcchh
Q 017595 176 SRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-------YPHIEGVNFDLP 239 (369)
Q Consensus 176 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~~ 239 (369)
|+....|.+.+..+.. .+..... .+..-+|+|+|+|+|.++..+++. +..+++..++.+
T Consensus 55 peis~~FGe~la~~~~----~~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~S 120 (387)
T 1zkd_A 55 PEISQMFGELLGLWSA----SVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 120 (387)
T ss_dssp HHHCHHHHHHHHHHHH----HHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CchHHHHHHHHHHHHH----HHHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecC
Confidence 4555566665544322 2222233 345678999999999999988765 234688888883
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.39 E-value=0.66 Score=36.27 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCC-CCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSR-NPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
+..+.-|++.|...+ ++.|+++|.+.+.-. +..+..-+.|.|+.|+..|++.+...++ +..+|....
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--g~~~Y~~~~ 80 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE--GESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT--SCEEEECCS
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC--CceEEEECC
Confidence 456778899997753 589999999887310 1117889999999999999998753221 235787654
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=85.00 E-value=0.46 Score=35.35 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred HHHHHhChhHHHHhcCCCCCCCHHHHHHh----CCCCCCCCcccHHHHHHHHhcCccccccccC-CCCCCcceecChhch
Q 017595 45 QAAAELGVFEIIAKAGPGAKLSAAQIAAQ----MPSRNPNTGVMLDRILRLLVTNRVLRCSLSS-AGDNQRLYSLAPVAK 119 (369)
Q Consensus 45 ~~a~~lglfd~L~~~~~~~~~t~~~La~~----~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~~~~y~~t~~~~ 119 (369)
+-.+++-|+..|.. +|.+.-+|++. +++ ++..+.+.|+-|...|+|.....+ ++.....|++|+.++
T Consensus 7 ~g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~ 78 (108)
T 3l7w_A 7 ALLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGE 78 (108)
T ss_dssp HHHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHH
Confidence 33456667777876 37887777776 477 899999999999999999874321 111123589999988
Q ss_pred hhhc
Q 017595 120 YFVL 123 (369)
Q Consensus 120 ~~~~ 123 (369)
..+.
T Consensus 79 ~~l~ 82 (108)
T 3l7w_A 79 KHLV 82 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=84.86 E-value=0.45 Score=40.70 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=43.5
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+.|+.++|+.+++ .+..+++.++.|...|+|.+...+ ....+.+|+.+..+..
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~---R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK---RGQILNITEKGLDVLY 79 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC---CeEEEEECHHHHHHHH
Confidence 6899999999999 999999999999999999874110 1456888888887664
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=84.13 E-value=0.97 Score=37.23 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=45.1
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcc-ccccccCCCCCCcceecChh
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRV-LRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~y~~t~~ 117 (369)
-....|++.|...+ ++.|+.+||+.+|+ ..+-+.|-|+.|...|+ +... .+.|.+...
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~-------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT-------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE-------TTEEECCTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE-------CCEEEECCc
Confidence 34566888887632 37999999999999 99999999999999999 6542 345666643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.98 E-value=1.2 Score=38.73 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP 246 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 246 (369)
.++.++..+. .....|||..||+|.++.+..+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 3455555442 45679999999999999998776 468899998 66665543
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=83.49 E-value=0.94 Score=37.03 Aligned_cols=65 Identities=11% Similarity=0.271 Sum_probs=47.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhC--------CCCCCCCcccHHHHHHHHhcCccccccccC--CCCCCcceecChh
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQM--------PSRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLYSLAPV 117 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y~~t~~ 117 (369)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|...|+|.....+ ++.....|++|+.
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA 74 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence 45567777876 489999999988 46 889999999999999999864221 1112357999999
Q ss_pred chh
Q 017595 118 AKY 120 (369)
Q Consensus 118 ~~~ 120 (369)
++.
T Consensus 75 G~~ 77 (179)
T 1yg2_A 75 GRS 77 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=83.43 E-value=0.72 Score=33.77 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCC-CHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKL-SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~-t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..+ |..+||+.+|+ ...-+++.|+.|...|++...
T Consensus 33 ~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 33 DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 355 99999999999 999999999999999999864
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=83.40 E-value=0.63 Score=43.08 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccC---CCCCCcceecCh
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSS---AGDNQRLYSLAP 116 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~~~~~~~y~~t~ 116 (369)
...+++..-+..|++.|. . +++|..|||+.+|+ .+.-+.++++-|...|++.+.... .|+....|++++
T Consensus 13 ~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~ 84 (380)
T 2hoe_A 13 MPKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISP 84 (380)
T ss_dssp ---------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECG
T ss_pred CchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEcc
Confidence 345666677778999999 6 49999999999999 999999999999999999875321 122234577777
Q ss_pred hch
Q 017595 117 VAK 119 (369)
Q Consensus 117 ~~~ 119 (369)
...
T Consensus 85 ~~~ 87 (380)
T 2hoe_A 85 NCA 87 (380)
T ss_dssp GGC
T ss_pred CCC
Confidence 654
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=83.21 E-value=0.96 Score=35.85 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=47.8
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQM-----PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+..+.-|++.|...+ ++.|+++|.+.+ ++ +..-+.|.|+.|+..|++.+...++ +..+|..+
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSK--SGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETT--TEEEEEES
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCC--CceEEEec
Confidence 566778899997753 589999999987 56 8889999999999999998753221 23467654
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=82.97 E-value=0.86 Score=35.41 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhC-----CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQM-----PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+-.+.-|++.|...+ +++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ +..+|..+
T Consensus 17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDG--GHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSS--SSCEEEES
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCC--CceEEEeC
Confidence 345667889987631 1489999999998 56 8889999999999999998753211 23568754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=82.71 E-value=2.5 Score=38.45 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=72.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCC-eEEEcch-hHHHHhCCC-CCCceEEeCCCCCC----CC--CCCEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHI-EGVNFDL-PHVIQNAPS-YRGVKHIGGNMFER----IP--KGDAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~----~p--~~D~v~~~~vlh~~ 277 (369)
..+++|+-||.|.+...+....-+. .+..+|. +..++..+. .+...++.+|+.+- ++ ..|+++...--..+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 4689999999999999999885333 3566777 655554433 35566788888762 23 24999887664444
Q ss_pred Chh-------H-HHHHHHHHH---HhCC--CCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHH
Q 017595 278 DDE-------H-CLTLLKNCY---EAIP--ENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 278 ~d~-------~-~~~~L~~~~---~~L~--pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 344 (369)
+-. + .-.++.++. +.++ | ++++.|.+..-. ++ .+.+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~l~----------------------~~--~~~~~i~~~ 135 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFE----------------------VS--STRDLLIQT 135 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGG----------------------GS--HHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCcccc----------------------CH--HHHHHHHHH
Confidence 321 1 112344333 4445 5 466777764210 01 124567788
Q ss_pred HHHcCCcceeE
Q 017595 345 ANEAGFNGVNY 355 (369)
Q Consensus 345 l~~aGf~~~~~ 355 (369)
|++.||.+...
T Consensus 136 l~~~GY~v~~~ 146 (343)
T 1g55_A 136 IENCGFQYQEF 146 (343)
T ss_dssp HHHTTEEEEEE
T ss_pred HHHCCCeeEEE
Confidence 88899886543
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=82.49 E-value=0.33 Score=36.77 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=38.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCC----CCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMP----SRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.|+..|... ++.|..+||+.++ + .+.-+.++|+-|+..|+|...
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 45566667654 4899999999998 6 789999999999999999875
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=82.39 E-value=0.75 Score=39.32 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=40.5
Q ss_pred CHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 66 SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 66 t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+..+||+.+++ ++..+.+.|+.|...|++... ....+.+|+.+..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~------~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA------GDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------TTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe------CCccEEECHHHHHHHH
Confidence 44999999999 999999999999999999974 2357888888876553
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=82.06 E-value=5 Score=35.27 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=48.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCC----CeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPH----IEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 281 (369)
+...|+-||||.|.....|.+.+|+ ++.+.+|...-.......+ ++.+.... + ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~f---v-de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRF---V-DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECC---C-CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEecc---C-CHH
Confidence 4569999999999999999988775 5777777411111111111 44444332 2 233
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCC
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPM 307 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~ 307 (369)
. +++.++.+....+|+|.|.-..
T Consensus 120 d---l~~l~~~~~~~~iLLISDIRS~ 142 (307)
T 3mag_A 120 Y---LRSIKKQLHPSKIILISDVRSK 142 (307)
T ss_dssp H---HHHHHHHHTTSCEEEEECCCC-
T ss_pred H---HHHHHHhccCCCEEEEEEecCC
Confidence 2 4555556667788998887654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=81.43 E-value=1.3 Score=35.04 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=62.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCC-----C-CE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPK-----G-DA 267 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~-----~-D~ 267 (369)
.....+... .-..-|||+|=|+|..=-++.+.+|+-+++++|..-.+--...-+.=.++-||+.+..|. + .+
T Consensus 30 L~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a 107 (174)
T 3iht_A 30 LEHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATA 107 (174)
T ss_dssp HHHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCce
Confidence 334444443 234689999999999999999999999999999621100000012346777877663221 2 23
Q ss_pred EEeccccccCChhHHH----HHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWILHNWDDEHCL----TLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~----~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.+...=|-...+++-. .+=.-+..+|.|||.++.-.+.
T Consensus 108 ~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 108 SLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred EEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 3222222212222222 2333455677889977765554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=81.23 E-value=17 Score=28.19 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-C------CCCCCEEEeccccc
Q 017595 205 EQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-R------IPKGDAILMKWILH 275 (369)
Q Consensus 205 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~------~p~~D~v~~~~vlh 275 (369)
....+|+=+|+|. |......+... +.+++++|. +..++.++...++.++.+|..+ + ....|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT--- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence 3557899999874 55544444443 357888887 6666665523356677777654 1 12238877653
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+++.....+..+.+.+.|..+++..
T Consensus 93 --~~~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 93 --NDDSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp --SCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred --CCcHHHHHHHHHHHHHCCCCeEEEE
Confidence 2233344455566666666665553
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.18 E-value=0.74 Score=35.84 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=32.1
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..|.++||+++|+ ++.-+.+.|.-|...|++...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6799999999999 999999999999999999873
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=81.00 E-value=2 Score=40.14 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCcceEEEEcCChhHHHHHHH-HhCCC-CeEEEcch-hHHHHhCCC---------C-CCceEEeCCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIIT-SRYPH-IEGVNFDL-PHVIQNAPS---------Y-RGVKHIGGNM 258 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~rv~~~~~d~ 258 (369)
++...++|||++.|.++..++ +.+++ .+++.++. |...+..++ . ++++++..-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 566899999999999999988 56765 78999998 766553321 2 5666665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 369 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 3e-75 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 6e-73 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 8e-69 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-40 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 3e-34 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 9e-34 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-33 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 3e-14 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 4e-10 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 1e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 6e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.001 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 231 bits (589), Expect = 3e-75
Identities = 97/243 (39%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 129 SLCPLLAMAGDQAILDIWYKLADAVLQGGI-PFNKVHGMGVYEYAGNDSRFNGVFNKAML 187
L A+L +W +AV+ I F VHG+ YE+ G D + N +FNK+M+
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62
Query: 188 NHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS 247
+ + M R+L+ Y GFE I LVDVGGG G L +I S+YP I+G+NFDLP VI+NAP
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 248 YRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM 307
G++H+GG+MF +P+GDA+++K + HNW DE C+ L NC++A+ NGK+II++ +
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182
Query: 308 VTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCN-FCIIE 366
P + ++ S D +M + GGRERT +++ L+ +GF+ C N ++E
Sbjct: 183 EEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241
Query: 367 FIK 369
F K
Sbjct: 242 FYK 244
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 225 bits (573), Expect = 6e-73
Identities = 132/243 (54%), Positives = 172/243 (70%)
Query: 126 DGVSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKA 185
DGVS+ L M D+ +++ WY L DAVL GGIPFNK +GM +EY G D RFN VFNK
Sbjct: 1 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNA 245
M +H++I M +IL++Y GFE +K LVDVGGG G +N I S+YP I+G+NFDLPHVI++A
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 246 PSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305
PSY GV+H+GG+MF IPK DA+ MKWI H+W DEHCL LKNCYEA+P+NGK+I+ + +
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 306 PMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCII 365
V P+++ A + D+IML GG+ERT +EF LA AGF G C N I+
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 366 EFI 368
EF+
Sbjct: 241 EFL 243
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 214 bits (546), Expect = 8e-69
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 6/244 (2%)
Query: 128 VSLCPLLAMAGDQAILDIWYKLADAVLQGGI-PFNKVHGMGVYEYAGNDSRFNGVFNKAM 186
+ L P++ D + +++L + + + F G G +++ + +N FN AM
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60
Query: 187 LNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP 246
+ + ++ + D F+ ++ +VDVGGG G T II +P ++ + FD P V++N
Sbjct: 61 ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120
Query: 247 SYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIP---ENGKIIIID 303
+ ++GG+MF IP DA+L+K+ILHNW D+ CL +LK C EA+ + GK+ IID
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180
Query: 304 RMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFC 363
+ + + + D+ M G+ER +E+ L EAGF
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 364 IIEF 367
+IE
Sbjct: 239 LIEI 242
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 141 bits (356), Expect = 1e-40
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 18/253 (7%)
Query: 129 SLCPLLAMAGDQAILDI-WYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAML 187
L + G + D+ + L D V G + +G +E D F+ M
Sbjct: 4 QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMS 63
Query: 188 NHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS 247
+ D+Y+ + ++ ++DVGGG G L I R PH+ G +L + A
Sbjct: 64 CDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARR 122
Query: 248 YRGVKHIGGN--------MFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKI 299
+ D +L+ ++L NW DE LT+L+ C A+ G++
Sbjct: 123 RFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRL 182
Query: 300 IIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV-----N 354
+++D A +++ D+ ML GGR RT E + LA AG
Sbjct: 183 LVLD--RADVEGDGADRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSG 239
Query: 355 YECFVCNFCIIEF 367
+F I+EF
Sbjct: 240 STTLPFDFSILEF 252
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 120 bits (302), Expect = 3e-34
Identities = 55/105 (52%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
Query: 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG 82
++E+ FAMQLA + VLP +++A EL + EIIAKAGPGA++S +IA+Q+P+ NP+
Sbjct: 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62
Query: 83 VMLDRILRLLVTNRVLRCSL--SSAGDNQRLYSLAPVAKYFVLNQ 125
VMLDR+LRLL +L CS+ G QRLY LA VAKY V N+
Sbjct: 63 VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 119 bits (299), Expect = 9e-34
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 5/110 (4%)
Query: 22 ENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAG-PGAKLSAAQIAAQMPSR--N 78
+ E+ AM L ++V PA + AA +L +FEIIAKA PGA +S ++IA+++P+ +
Sbjct: 1 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH 60
Query: 79 PNTGVMLDRILRLLVTNRVLRCSLSSAGDN--QRLYSLAPVAKYFVLNQD 126
+ LDR+LRLL + VL + + D +R+Y L+ V KY V ++
Sbjct: 61 SDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 122 bits (307), Expect = 2e-33
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 13/213 (6%)
Query: 146 WYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFE 205
+ +L DA+ G + ++G YE F+ + + + +Y+ +
Sbjct: 21 FTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WT 79
Query: 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMF------ 259
++ ++DVGGG G I R PH+ ++ + A SY + + +
Sbjct: 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 139
Query: 260 --ERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAR 317
K DAI++ ++L NW D + +L C EA+ G+I+I + +
Sbjct: 140 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE---RDDLHENSFNE 196
Query: 318 EASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350
+ + D+ M + F GG RT +++ LA AG
Sbjct: 197 QFTELDLRM-LVFLGGALRTREKWDGLAASAGL 228
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 65.7 bits (160), Expect = 3e-14
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 32 MQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRL 91
+ + + S++ A E+ + II G +S + + + + + + R++R
Sbjct: 14 YKHIYAFIDSMSLKWAVEMNIPNIIQNHGKP--ISLSNLVSILQVPSSKI-GNVRRLMRY 70
Query: 92 LVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVLNQD 126
L N + Y+L ++ V D
Sbjct: 71 LAHNGFFEII----TKEEESYALTVASELLVRGSD 101
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 54.0 bits (130), Expect = 4e-10
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 22 ENEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNT 81
E + ++ ++V P +++ AA L + + + AG + A +A + +
Sbjct: 2 EPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGA---DTLAGLADRTDTHPQAL 57
Query: 82 GVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122
R++R L V L R +
Sbjct: 58 ----SRLVRHLTVVGV----LEGGEKQGRPLRPTRLGMLLA 90
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 49.4 bits (118), Expect = 1e-08
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 26 DTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVML 85
D ++L S+ P ++ AA L + + I + +AA+ +R L
Sbjct: 1 DALRTLIRLG-SLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDTRPE----AL 51
Query: 86 DRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122
R++R LV +L D + V +
Sbjct: 52 LRLIRHLVAIGLLEE------DAPGEFVPTEVGELLA 82
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDA 267
++++DV G G N + + + G H + +
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 268 ILMKWILHNWDDEHCL------TLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321
+ + + Y + + G+++++D PE A
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD---NSAPENDAFDV--FY 131
Query: 322 TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEFIK 369
+ +S R +++ + EAGF CF F ++
Sbjct: 132 NYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCD 179
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 21/157 (13%), Positives = 52/157 (33%), Gaps = 15/157 (9%)
Query: 210 LVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERI------- 262
++D+G G G T + GV+ V + + +
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79
Query: 263 -PKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASM 321
D I ++ H++ D ++ + ++G+ +++D P + +
Sbjct: 80 DDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDP-----VLDEFV 132
Query: 322 TDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358
+ L S RE + E+ A+ + + + +
Sbjct: 133 NHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 169
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 38.0 bits (87), Expect = 0.001
Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 22/183 (12%)
Query: 193 VMNR-ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGV 251
VM+ ++ ++ F + L+++G G + + + I V + + R
Sbjct: 6 VMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCV--EASEEAISHAQGRLK 63
Query: 252 KHIGGNMFERIPKGDAILMKWILHNWDDEHC----LTLLKNCYEAIPENGKIIIIDRMPM 307
I I+ EH L + + + E G++ +
Sbjct: 64 DGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFL------ 117
Query: 308 VTPEATAAAREASMTDIIMLMQFSGGRER---------TTQEFMALANEAGFNGVNYECF 358
V P A A +R+ ++ I+ + A+ AG
Sbjct: 118 VCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 177
Query: 359 VCN 361
Sbjct: 178 FFK 180
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.3 bits (88), Expect = 0.001
Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 22/195 (11%)
Query: 183 NKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYP---HIEGVNFDLP 239
N L + ++ ++++ + +VD G G G ++ P G++
Sbjct: 4 NTRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 63
Query: 240 ------HVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLKNCYEAI 293
+ + P E K D + L + T+L+ ++
Sbjct: 64 LLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPE--TMLQKMIHSV 121
Query: 294 PENGKIIIID-------RMPMVTPEATAAAREAS--MTDIIMLMQFSGGRERTTQEFMAL 344
+ GKII + ++ E + + Q +G +
Sbjct: 122 KKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 181
Query: 345 ANEAGFNGVNYECFV 359
+E G N EC V
Sbjct: 182 LSELGV--KNIECRV 194
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 369 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.79 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.74 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.7 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.68 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.67 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.64 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.62 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.61 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.6 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.56 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.55 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.55 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.54 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.53 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.49 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.47 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.47 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.46 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.45 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.43 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.43 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.43 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.41 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.41 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.37 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.33 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.28 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.25 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.25 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.22 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.21 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.19 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.19 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.14 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.06 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.96 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.95 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.92 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.92 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.9 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.86 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.76 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.75 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.74 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.62 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.4 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.35 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.32 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.31 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.26 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.2 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.19 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.17 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.16 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.15 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.14 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.12 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.12 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.11 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.07 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.06 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.05 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.01 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.95 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.86 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.86 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.83 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.83 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.82 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.82 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.81 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.79 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.77 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.71 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.69 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.6 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.58 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.35 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.2 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.92 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.82 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.74 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.63 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.62 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.6 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.54 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.51 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.4 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 95.65 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 95.65 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 95.33 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.27 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 95.15 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 95.14 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.11 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 95.0 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 94.99 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.95 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 94.91 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 94.83 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 94.8 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 94.78 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 94.58 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.55 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 94.54 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 94.49 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 94.49 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.41 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 94.33 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 94.31 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.2 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 93.86 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 93.86 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 93.81 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 93.66 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.62 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 93.61 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 93.48 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 93.4 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 93.29 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 93.23 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 93.06 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 92.96 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.85 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 92.71 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 92.66 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 92.66 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.6 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 92.54 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 92.45 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 92.21 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 92.2 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 92.12 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 92.07 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 92.04 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 91.97 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 91.86 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 91.77 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 91.68 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 91.63 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 91.39 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 91.32 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.18 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 91.06 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.38 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 89.79 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.73 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 88.92 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 88.47 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 87.64 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.23 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 86.77 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.25 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.73 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 85.63 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 85.44 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 84.96 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.63 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 83.37 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 82.32 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 82.25 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 82.2 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 81.86 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 81.48 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 81.29 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 80.33 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.8e-45 Score=324.39 Aligned_cols=240 Identities=40% Similarity=0.800 Sum_probs=209.3
Q ss_pred ChHHHHHHhcChhHHHHhhhhHHHHhcCC-ChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCc
Q 017595 129 SLCPLLAMAGDQAILDIWYKLADAVLQGG-IPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQI 207 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 207 (369)
|+++++.++++|.+++.|.+|.+.+++|. ++|+..+|.++|+|+.++|+..+.|+.+|...+....+.+++.++.+++.
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~ 82 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI 82 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 78899999989999999999999999865 57999999999999999999999999999999998899999999867888
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHHHH
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLK 287 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~ 287 (369)
.+|||||||+|.++.++++++|+++++++|+|.+++.+...+|++++.+|+++++|.+|+|+++++||+|+|+++.++|+
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~ 162 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 162 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe-cCceeEEE
Q 017595 288 NCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF-VCNFCIIE 366 (369)
Q Consensus 288 ~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~ 366 (369)
+++++|+|||+|+|+|.+.++.+...........+|+.|+..+ +|++||.+||.++|++|||+.+++++. .+..+|||
T Consensus 163 ~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE 241 (244)
T d1fp1d2 163 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241 (244)
T ss_dssp HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEE
T ss_pred HHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEE
Confidence 9999999999999999998876555444445667788888766 999999999999999999999999755 48899999
Q ss_pred EeC
Q 017595 367 FIK 369 (369)
Q Consensus 367 ~~~ 369 (369)
++|
T Consensus 242 ~~K 244 (244)
T d1fp1d2 242 FYK 244 (244)
T ss_dssp EEC
T ss_pred EeC
Confidence 998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.7e-44 Score=316.29 Aligned_cols=241 Identities=54% Similarity=1.027 Sum_probs=221.5
Q ss_pred CChHHHHHHhcChhHHHHhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCc
Q 017595 128 VSLCPLLAMAGDQAILDIWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQI 207 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 207 (369)
.++++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++|+..+.|..+|...+......+++.++.+++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 47899998988998999999999999999999999999999999999999999999999999888888999988845667
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHHHH
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLK 287 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~ 287 (369)
.+|||||||+|.++.++++++|+++++++|+|.+++.+...+|++++.+|+++++|.+|++++.++||+|++++++++|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999989999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeEEEE
Q 017595 288 NCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCIIEF 367 (369)
Q Consensus 288 ~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 367 (369)
+++++|+|||+++|+|.+.++.............+|+.|+..+.+|++||.+||+++|++|||+.+++++.....+|||+
T Consensus 163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~ 242 (243)
T d1kyza2 163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242 (243)
T ss_dssp HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence 99999999999999999887665444344445677888887766899999999999999999999999999999999997
Q ss_pred e
Q 017595 368 I 368 (369)
Q Consensus 368 ~ 368 (369)
.
T Consensus 243 ~ 243 (243)
T d1kyza2 243 L 243 (243)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.6e-43 Score=309.08 Aligned_cols=239 Identities=30% Similarity=0.572 Sum_probs=213.1
Q ss_pred ChHHHHHHhcChhHHHHhhhhHHHHhcCC-ChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCc
Q 017595 129 SLCPLLAMAGDQAILDIWYKLADAVLQGG-IPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQI 207 (369)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 207 (369)
++.+++.+..+|.++..|..|++.++++. ++|+..+|.++|+|+.++|+..+.|+++|...+......+.+....+++.
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~ 81 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL 81 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence 46778888888999999999999999874 68999999999999999999999999999988877666665432226788
Q ss_pred ceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHHHH
Q 017595 208 KQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTLLK 287 (369)
Q Consensus 208 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~ 287 (369)
.+|||||||+|.++..+++++|+++++++|+|.+++.+...+||+++.+|+++++|.+|+|+++++||+|+|++++++|+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~ 161 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK 161 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999888889999999999999999999999
Q ss_pred HHHHhCCCC---CEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecCceeE
Q 017595 288 NCYEAIPEN---GKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVCNFCI 364 (369)
Q Consensus 288 ~~~~~L~pg---G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 364 (369)
+++++|+|| |+++|+|.+.++.............+++.|++ + +|+.||.+||+++|++|||+.+++++..+..+|
T Consensus 162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv 239 (244)
T d1fp2a2 162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239 (244)
T ss_dssp HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence 999999998 89999999988765554444445567777764 3 899999999999999999999999999999999
Q ss_pred EEEeC
Q 017595 365 IEFIK 369 (369)
Q Consensus 365 i~~~~ 369 (369)
||+||
T Consensus 240 IE~~p 244 (244)
T d1fp2a2 240 IEIYP 244 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.6e-39 Score=289.65 Aligned_cols=238 Identities=27% Similarity=0.467 Sum_probs=204.3
Q ss_pred CChHHHHHHhcChhHHH-HhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCC
Q 017595 128 VSLCPLLAMAGDQAILD-IWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQ 206 (369)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 206 (369)
.++++|+.+........ +|.+|.+.+|+|.++|+..+|.++|+|+.++++..+.|+++|...+......+++.++ +++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 81 (256)
T d1qzza2 3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81 (256)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence 46788887654443433 6999999999999999999999999999999999999999999988888899999998 999
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCCCCCCC-CEEEeccccccCC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFERIPKG-DAILMKWILHNWD 278 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~~p~~-D~v~~~~vlh~~~ 278 (369)
..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|+.++.+|+++++|.+ |+|++.++||+|+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~ 161 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 161 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence 99999999999999999999999999999999888776543 378999999999988765 9999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 279 DEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
++++.++|++++++|||||+|+|+|.+.++.... .......+++.|+..+ +|+.||.++|+++|++|||+++++.+.
T Consensus 162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence 9999999999999999999999999875543222 2234566788888776 899999999999999999999999886
Q ss_pred c-----CceeEEEEeC
Q 017595 359 V-----CNFCIIEFIK 369 (369)
Q Consensus 359 ~-----~~~~vi~~~~ 369 (369)
+ ..++|||+.+
T Consensus 239 ~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 239 GSTTLPFDFSILEFTA 254 (256)
T ss_dssp CCSSCSSCEEEEEEEE
T ss_pred CCcCccCceEEEEEEe
Confidence 5 3579999863
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=2.2e-37 Score=275.62 Aligned_cols=220 Identities=24% Similarity=0.478 Sum_probs=191.8
Q ss_pred HhhhhHHHHhcCCChhhhccCCChhhhhhcCchHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHH
Q 017595 145 IWYKLADAVLQGGIPFNKVHGMGVYEYAGNDSRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNII 224 (369)
Q Consensus 145 ~~~~l~~~l~~g~~~~~~~~~~~~~e~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l 224 (369)
+|.+|++++|+|+++|+..+|.++|+|+.++++..+.|..+|...+....+.+++.++ +++..+|||||||+|.++..+
T Consensus 20 ~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~l 98 (253)
T d1tw3a2 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAI 98 (253)
T ss_dssp GGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHH
T ss_pred cHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999988888899999998 999999999999999999999
Q ss_pred HHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCCCCCCC-CEEEeccccccCChhHHHHHHHHHHHhCCCC
Q 017595 225 TSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFERIPKG-DAILMKWILHNWDDEHCLTLLKNCYEAIPEN 296 (369)
Q Consensus 225 ~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pg 296 (369)
++++|+++++++|+|.+++.+++ .+|++++.+|++++.|.. |+|+++++||||+++++.++|++++++||||
T Consensus 99 a~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG 178 (253)
T d1tw3a2 99 ARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG 178 (253)
T ss_dssp HHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred HHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCC
Confidence 99999999999999877776543 278999999999877655 9999999999999999999999999999999
Q ss_pred CEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEecC-----ceeEEEEeC
Q 017595 297 GKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECFVC-----NFCIIEFIK 369 (369)
Q Consensus 297 G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi~~~~ 369 (369)
|+|+|.|.......... .....+|+.|+..+ +|+.||.++|+++|++|||+++++...++ ...+|++.|
T Consensus 179 G~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 179 GRILIHERDDLHENSFN---EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred cEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence 99999998765433222 23456677887766 89999999999999999999999877653 345666543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=6e-21 Score=165.69 Aligned_cols=164 Identities=13% Similarity=0.199 Sum_probs=124.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHh--CCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CCCCCCEEEeccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSR--YPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RIPKGDAILMKWI 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~v 273 (369)
....+|||||||+|..+..+++. .|+++++++|+ +.+++.|++ ..++.+..+|+.+ +.+..|++++..+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 45679999999999999999986 48999999999 999888764 2567888888877 5555599999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhh-------------cCCccCCHHH
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQF-------------SGGRERTTQE 340 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------~~~~~~t~~e 340 (369)
+|+++.++..++|++++++|||||++++.|...+..+...... ......+...... ..-...+.++
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 196 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL-IDLHHQFKRANGYSELEVSQKRTALENVMRTDSIET 196 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHH
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHH-HHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHH
Confidence 9999988999999999999999999999999876653221100 0011111110000 0013468999
Q ss_pred HHHHHHHcCCcceeEEEecCceeEEEEeC
Q 017595 341 FMALANEAGFNGVNYECFVCNFCIIEFIK 369 (369)
Q Consensus 341 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 369 (369)
+.++|+++||+.++++.....++.+.++|
T Consensus 197 ~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 197 HKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 99999999999999876666666677765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.81 E-value=6.7e-20 Score=159.40 Aligned_cols=152 Identities=15% Similarity=0.316 Sum_probs=115.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 265 (369)
..+++..+ +++..+|||||||+|.++..+++.++ +++++|+ +.+++.|++ .++++++.+|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 45666665 78889999999999999999998864 6888898 787776643 4789999999988 77654
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHH-HHhhcCCccCCHHHHHH
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIM-LMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~~ 343 (369)
|+|++.+++||++| ..++|++++++|||||++++.++..+..... ....+... .......+.++.++|.+
T Consensus 82 fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAF------DVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHH------HHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred cccccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHH------HHHHHHHHhhcccCcccCCCHHHHHH
Confidence 99999999999965 4588999999999999999999876543211 11111111 11112345678999999
Q ss_pred HHHHcCCcceeEEE
Q 017595 344 LANEAGFNGVNYEC 357 (369)
Q Consensus 344 ll~~aGf~~~~~~~ 357 (369)
+|+++||+++++..
T Consensus 154 ~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 154 MLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999887654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=2.1e-19 Score=161.23 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=121.7
Q ss_pred HHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCC
Q 017595 186 MLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGN 257 (369)
Q Consensus 186 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d 257 (369)
+..........+....+ +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++. ++++++.+|
T Consensus 48 ~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d 125 (282)
T d2o57a1 48 SLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 125 (282)
T ss_dssp HHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccc
Confidence 33333344555555555 7788999999999999999999875 578999998 8887766642 689999999
Q ss_pred CCC-CCCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCc
Q 017595 258 MFE-RIPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGR 334 (369)
Q Consensus 258 ~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 334 (369)
+.+ +++.+ |+|++..++||+++ ..++|++++++|||||++++.++...+....... ... .... ....
T Consensus 126 ~~~l~~~~~sfD~V~~~~~l~h~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~---~~~~--~~~~ 195 (282)
T d2o57a1 126 FLEIPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI---QPI---LDRI--KLHD 195 (282)
T ss_dssp TTSCSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG---HHH---HHHH--TCSS
T ss_pred cccccccccccchhhccchhhhccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHH---HHH---HHHh--ccCC
Confidence 998 77754 99999999999965 4689999999999999999999877654322111 111 1111 1233
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEe
Q 017595 335 ERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 335 ~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
..+.++|.++++++||+.+++...
T Consensus 196 ~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 196 MGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCceEEEEEC
Confidence 468899999999999998887754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=1.2e-19 Score=160.14 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=116.5
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC--C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG--D 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 266 (369)
..+++.++ ..+..+|||||||+|.++..++..+.+ +++++|. +.+++.|++ .++++++.+|+.+ +++.. |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45666666 567789999999999999999887655 7888898 888877653 3668999999987 55443 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALAN 346 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 346 (369)
+|++..++||+++++..++|++++++|+|||+++|.+.+....... .+ ...+...||.++|+++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~---------~d-----~~d~~~~rs~~~~~~l~~ 226 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL---------VD-----KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE---------EE-----TTTTEEEBCHHHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce---------ec-----ccCCceeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543211 00 011345679999999999
Q ss_pred HcCCcceeEEE
Q 017595 347 EAGFNGVNYEC 357 (369)
Q Consensus 347 ~aGf~~~~~~~ 357 (369)
++||++++...
T Consensus 227 ~aGf~ii~~~~ 237 (254)
T d1xtpa_ 227 ESGVRVVKEAF 237 (254)
T ss_dssp HHTCCEEEEEE
T ss_pred HcCCEEEEEEe
Confidence 99999988754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-19 Score=156.38 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=112.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCC-CCCCC--CEEEeccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFE-RIPKG--DAILMKWI 273 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~v~~~~v 273 (369)
..+..+|||||||+|.++..++..++. +++++|+ +.+++.|++. ++++++++|+.+ +++.. |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 456689999999999999999877653 7899999 8888776542 468999999988 55443 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcce
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV 353 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 353 (369)
+||+++++..++|++++++|+|||++++.+....+..... .......++.++|+++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD---------------DVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE---------------TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc---------------cCCceeeCCHHHHHHHHHHcCCEEE
Confidence 9999998888999999999999999999998765432110 0113445789999999999999999
Q ss_pred eEEEe
Q 017595 354 NYECF 358 (369)
Q Consensus 354 ~~~~~ 358 (369)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=1.8e-18 Score=150.73 Aligned_cols=151 Identities=17% Similarity=0.278 Sum_probs=116.1
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC--
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG-- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~-- 265 (369)
-+++..+ ++...+|||||||+|.++..++++++ +++++|+ +.+++.|++ .+++.++.+|+.+ +++.+
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3556666 88889999999999999999999864 6899998 788877654 3689999999988 77755
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhH-HHHHhhcCCccCCHHHHHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDI-IMLMQFSGGRERTTQEFMAL 344 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~t~~e~~~l 344 (369)
|+|++.+++||+++ ..++|++++++|||||++++.+...+..+. .. .+++. .........+..+..+|..+
T Consensus 84 D~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPV---LD---EFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHH---HH---HHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHH---HH---HHHHHHHhhCCCcccccCCHHHHHHH
Confidence 99999999999965 568999999999999999999887654321 11 11111 11111124566789999999
Q ss_pred HHHcCCcceeEEE
Q 017595 345 ANEAGFNGVNYEC 357 (369)
Q Consensus 345 l~~aGf~~~~~~~ 357 (369)
++++||.+.++..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998766543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.1e-18 Score=149.48 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=115.4
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 265 (369)
+..+.+.+. +....+|||||||+|.++..++++++ .+++++|+ +.+++.+++ .++|+++.+|+.+..+..
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 345666665 77889999999999999999998875 79999999 888876654 267999999998854443
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHH
Q 017595 266 --DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMA 343 (369)
Q Consensus 266 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 343 (369)
|+|++..++||+++. .++|+++++.|||||++++.+......+....... .. .........+..+|..
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ---AC-----GVSSTSDFLTLPGLVG 169 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH---TT-----TCSCGGGSCCHHHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHH---Hh-----ccCCCcccCCHHHHHH
Confidence 999999999999654 58999999999999999999886554332211110 00 0011123468899999
Q ss_pred HHHHcCCcceeEEEe
Q 017595 344 LANEAGFNGVNYECF 358 (369)
Q Consensus 344 ll~~aGf~~~~~~~~ 358 (369)
+++++||+++.....
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998876543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.9e-17 Score=147.36 Aligned_cols=164 Identities=18% Similarity=0.290 Sum_probs=125.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 265 (369)
++.+++.+. +++..+|||||||.|.++..++++++ .+++++|+ +..++.+++ ..++.+...|+.+.-...
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 567888886 88889999999999999999888874 69999999 777665543 256788877765432234
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcc-----hHHHhhhhhhhHHHHHhhcCCccCCHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEA-----TAAAREASMTDIIMLMQFSGGRERTTQE 340 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~t~~e 340 (369)
|.|++..+++|++++....+|++++++|||||+++|.+.+..+.... ..........++..-..+++|..+|.++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~ 198 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 198 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence 99999999999998888899999999999999999988765432110 0011112233444444567999999999
Q ss_pred HHHHHHHcCCcceeEEEec
Q 017595 341 FMALANEAGFNGVNYECFV 359 (369)
Q Consensus 341 ~~~ll~~aGf~~~~~~~~~ 359 (369)
+.+.++++||+++++...+
T Consensus 199 l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 199 MVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHTTCBCCCCEECH
T ss_pred hhhhHHhhccccceeeecc
Confidence 9999999999999887654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=8.3e-18 Score=143.65 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=102.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEeccccccCChhH
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDDEH 281 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d~~ 281 (369)
...+|||||||+|.++..+. +.+++|. +.+++.+++. ++.++.+|+.+ +++.. |+|++.++|||+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-ccccccccccccccccccccccccccccccccc--
Confidence 34689999999999988874 3478898 8888887754 79999999988 66643 99999999999965
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEE
Q 017595 282 CLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 282 ~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 357 (369)
..++|++++++|+|||++++.++..... .......... ......+.+.+|.++|.++|+++||+.+++..
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESF----LGREYEKNKE--KSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSH----HHHHHHHTTT--C-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcch----hHHhhhhccc--cccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 5689999999999999999998754321 0000000000 00011245567999999999999999888765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=9.8e-17 Score=142.75 Aligned_cols=164 Identities=16% Similarity=0.219 Sum_probs=125.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 265 (369)
.+.+++.+. +++..+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++..+|+.+.-...
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 457777776 8888999999999999999999998 589999998 665554432 378999999986521234
Q ss_pred CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCc-----chHHHhhhhhhhHHHHHhhcCCccCCHHH
Q 017595 266 DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPE-----ATAAAREASMTDIIMLMQFSGGRERTTQE 340 (369)
Q Consensus 266 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 340 (369)
|.|++..++.|+.......++++++++|||||++++...+...... .+.........++..-..+++|..++.++
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~ 208 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 208 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence 9999999999998777778999999999999999998887432110 00011122233444444467999999999
Q ss_pred HHHHHHHcCCcceeEEEec
Q 017595 341 FMALANEAGFNGVNYECFV 359 (369)
Q Consensus 341 ~~~ll~~aGf~~~~~~~~~ 359 (369)
+..+++++||+++++....
T Consensus 209 ~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 209 VQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHhchhhcccccch
Confidence 9999999999999887654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=8.4e-17 Score=143.65 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=124.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPKG 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 265 (369)
.+.+++.+. +++..+|||||||.|.++..++++++ ++++++++ +..++.+++ ..++.+...|+..+-...
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 457777776 88899999999999999999999985 69999998 665554432 267888888875432234
Q ss_pred CEEEeccccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHH-----HhhhhhhhHHHHHhhcCC
Q 017595 266 DAILMKWILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAA-----AREASMTDIIMLMQFSGG 333 (369)
Q Consensus 266 D~v~~~~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~ 333 (369)
|.|++..++.|+++ +.-..++++++++|||||++++...+.++....... .......++..-..+++|
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999999976 345789999999999999999999887653211000 011122333433346799
Q ss_pred ccCCHHHHHHHHHHcCCcceeEEEecC
Q 017595 334 RERTTQEFMALANEAGFNGVNYECFVC 360 (369)
Q Consensus 334 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 360 (369)
...|..++...++++||++.++.....
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~~ 234 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIGA 234 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHhhhcccccccceeeeccc
Confidence 999999999999999999998877653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=4.7e-17 Score=145.43 Aligned_cols=160 Identities=13% Similarity=0.193 Sum_probs=110.5
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 266 (369)
.+++.+..+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD 96 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 96 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence 44444433567899999999999999999998874 78999999 8888876542 368999999988 66555 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCC--------CCCcchHHHhhhhhhhHHHHHhhcCCcc-CC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPM--------VTPEATAAAREASMTDIIMLMQFSGGRE-RT 337 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~t 337 (369)
+|++.+++||++++ .++|++++++|||||++++.|+... +............+...........++. ..
T Consensus 97 ~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 174 (281)
T d2gh1a1 97 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 174 (281)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTG
T ss_pred EEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999664 5899999999999999999986311 0000000001111111111111113332 22
Q ss_pred HHHHHHHHHHcCCcceeEEE
Q 017595 338 TQEFMALANEAGFNGVNYEC 357 (369)
Q Consensus 338 ~~e~~~ll~~aGf~~~~~~~ 357 (369)
..++..+++++||+.+++.-
T Consensus 175 ~~~l~~~l~eaGf~~i~~~~ 194 (281)
T d2gh1a1 175 GMKIPIYLSELGVKNIECRV 194 (281)
T ss_dssp GGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEE
Confidence 35678899999999887643
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.67 E-value=2.9e-17 Score=121.98 Aligned_cols=95 Identities=15% Similarity=0.216 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
+..|+...|+++++||+.+++|++|+++||||.|.+.+ ||+|++|||+++++ +|.+.+.+.|+||+|++.|+|.+..
T Consensus 5 e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~--~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~ 81 (101)
T d1fp2a1 5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT 81 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcC--CCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec
Confidence 45678889999999999999999999999999998753 69999999999998 3334567999999999999997642
Q ss_pred cCCCCCCcceecChhchhhhcC
Q 017595 103 SSAGDNQRLYSLAPVAKYFVLN 124 (369)
Q Consensus 103 ~~~~~~~~~y~~t~~~~~~~~~ 124 (369)
.++++|.+|+.++.++.+
T Consensus 82 ----~~~~~Y~lt~~s~~Lv~~ 99 (101)
T d1fp2a1 82 ----KEEESYALTVASELLVRG 99 (101)
T ss_dssp ----SSSEEEEECHHHHTTSTT
T ss_pred ----CCCCeEecCHHHHHhhcC
Confidence 145799999999987764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.64 E-value=5e-16 Score=134.12 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=103.2
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--CCCceEEeCCCCC-CCCCC-CEEEeccccccCCh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--YRGVKHIGGNMFE-RIPKG-DAILMKWILHNWDD 279 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p~~-D~v~~~~vlh~~~d 279 (369)
....+|||||||+|.++..+++... +++++|+ +.+++.+++ ..++.++.+|+.+ +.++. |+|++.++|||+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence 3567999999999999999988764 5888898 778887764 3579999999877 44444 99999999999955
Q ss_pred hHHHHHHHHHH-HhCCCCCEEEEEeccCCCCCcchHHHhhhhhh-------hH-HHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 280 EHCLTLLKNCY-EAIPENGKIIIIDRMPMVTPEATAAAREASMT-------DI-IMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 280 ~~~~~~L~~~~-~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-------d~-~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
...+|++++ ++|+|||++++.-+..... .......+ .+ .........+.++.++++.+++++||
T Consensus 97 --~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf 169 (225)
T d2p7ia1 97 --PVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169 (225)
T ss_dssp --HHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhcCCCceEEEEeCCcccH-----HHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCC
Confidence 468899998 7899999999875532210 00000000 00 00001123456789999999999999
Q ss_pred cceeEE
Q 017595 351 NGVNYE 356 (369)
Q Consensus 351 ~~~~~~ 356 (369)
++++..
T Consensus 170 ~i~~~~ 175 (225)
T d2p7ia1 170 QVTYRS 175 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=3.3e-15 Score=128.76 Aligned_cols=137 Identities=11% Similarity=0.085 Sum_probs=106.8
Q ss_pred hccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh----CCCCCCceEEeCCCCCCC--CC--CCEEEe
Q 017595 200 SYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN----APSYRGVKHIGGNMFERI--PK--GDAILM 270 (369)
Q Consensus 200 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~rv~~~~~d~~~~~--p~--~D~v~~ 270 (369)
.++ +++..+|||||||+|.++..+++..|+.+++++|+ |.+++. +...+++..+.+|...+. .. .|++++
T Consensus 69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence 344 67889999999999999999999999999999999 777664 344588899999887732 22 277777
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGF 350 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 350 (369)
.+.+|++ ++...+++++++.|||||++++.......+..... ....+++.+.|+++||
T Consensus 148 ~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~--------------------~~~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 148 YEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP--------------------KEIFKEQKEILEAGGF 205 (230)
T ss_dssp EECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH--------------------HHHHHHHHHHHHHHTE
T ss_pred eccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH--------------------HHHHHHHHHHHHHcCC
Confidence 7888877 55678899999999999999998775543321111 0124678899999999
Q ss_pred cceeEEEec
Q 017595 351 NGVNYECFV 359 (369)
Q Consensus 351 ~~~~~~~~~ 359 (369)
++++...+.
T Consensus 206 ~ive~idL~ 214 (230)
T d1g8sa_ 206 KIVDEVDIE 214 (230)
T ss_dssp EEEEEEECT
T ss_pred EEEEEecCC
Confidence 999998775
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.61 E-value=1.9e-15 Score=127.73 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-CCCCC-CEEEecccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-RIPKG-DAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~-D~v~~~~vl 274 (369)
+-.+++|||||||+|..+..++++. .+++++|+ +.+++.++. .+++++...|+.+ +.++. |+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 3345799999999999999999985 47888898 777775542 3678999999988 44444 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
||+++++..++|++++++|+|||++++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999999999999999999999987754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=5.3e-16 Score=133.61 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=85.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-CCCCC--CEEEeccccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-RIPKG--DAILMKWILH 275 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh 275 (369)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++.. |+|++..++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 45689999999999999999975 568999999 888887754 2568899999988 66644 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 276 NWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|+++++..++|++++++|||||++++....
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999888889999999999999999987653
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.60 E-value=9.4e-16 Score=113.79 Aligned_cols=103 Identities=53% Similarity=0.839 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
++++++-..++++++++.+++|++|++|||||+|.+.|+++++|..||+.++..++|..+..|.|+||+|++.|+|.+..
T Consensus 3 ~dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~ 82 (107)
T d1kyza1 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSV 82 (107)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEee
Confidence 45566778889999999999999999999999999877667899999999999866655778999999999999997643
Q ss_pred cC--CCCCCcceecChhchhhhcCC
Q 017595 103 SS--AGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 103 ~~--~~~~~~~y~~t~~~~~~~~~~ 125 (369)
.. +|.....|.+||.++.|+.++
T Consensus 83 ~~~~dg~~~~~Y~LTpvsk~Lv~de 107 (107)
T d1kyza1 83 RTQQDGKVQRLYGLATVAKYLVKNE 107 (107)
T ss_dssp EECTTSCEEEEEEECHHHHHHSCCT
T ss_pred ecCCCCCeeeEEecchhHHhhcCCC
Confidence 21 122234799999999998753
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.56 E-value=2.7e-15 Score=109.27 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSL 102 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 102 (369)
..++++..+++.+.+++.+++|++|+++||||+|.. ||+|+++||+++|+ +++.+.|+|++|++.|+|+++.
T Consensus 3 ~~d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~----gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~ 74 (92)
T d1qzza1 3 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE 74 (92)
T ss_dssp CCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC
T ss_pred CcchhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC----CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeec
Confidence 346889999999999999999999999999999986 59999999999999 9999999999999999999752
Q ss_pred cCCCCCCcceecChhchhhhc
Q 017595 103 SSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 103 ~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.+.+.|++|+.+..+..
T Consensus 75 ----d~~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 75 ----KQGRPLRPTRLGMLLAD 91 (92)
T ss_dssp ----C-CCCCEECTTGGGGST
T ss_pred ----CCCceecccHHHHhccC
Confidence 13457999999887753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=9.2e-15 Score=127.96 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=88.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG- 265 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~- 265 (369)
+..+.+.+. ..+..+|||||||+|..+..+++.. .+++++|+ +.+++.|++. .++.++.+|+.+ +++..
T Consensus 30 ~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence 345555555 5567899999999999999999875 47899999 8898877653 479999999988 66655
Q ss_pred CEEEec-cccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 DAILMK-WILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 D~v~~~-~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+|++. .+++|++.++..++|+++++.|||||++++..
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 998875 68888888888999999999999999998743
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.55 E-value=5.4e-15 Score=106.41 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=71.5
Q ss_pred HHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcc
Q 017595 32 MQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRL 111 (369)
Q Consensus 32 ~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~ 111 (369)
+..+.+++.+.+|++|+++||||+|.. ||+|++|||+++|+ ++..+.|+||+|++.|+++++ +++.
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~----gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~------~~~~ 71 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED------APGE 71 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------ETTE
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc----CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec------CCCe
Confidence 344578899999999999999999976 59999999999999 999999999999999999875 5689
Q ss_pred eecChhchhhhcC
Q 017595 112 YSLAPVAKYFVLN 124 (369)
Q Consensus 112 y~~t~~~~~~~~~ 124 (369)
|.+|+.++.+.++
T Consensus 72 y~lt~~s~~L~~D 84 (85)
T d1tw3a1 72 FVPTEVGELLADD 84 (85)
T ss_dssp EEECTTGGGGSTT
T ss_pred EecCHHHHHhhcC
Confidence 9999999988765
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.54 E-value=9.2e-15 Score=108.65 Aligned_cols=103 Identities=40% Similarity=0.643 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcC-CCCCCCHHHHHHhCCC--CCCCCcccHHHHHHHHhcCcccc
Q 017595 23 NEEDTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAG-PGAKLSAAQIAAQMPS--RNPNTGVMLDRILRLLVTNRVLR 99 (369)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~-~~~~~t~~~La~~~~~--~~~~~~~~l~~~L~~L~~~g~l~ 99 (369)
.+++++-..++++.+++.+++|++|++|||||+|...| |++++|+.||+.++.. ++|..+..|.|+||+|++.|+|.
T Consensus 2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~ 81 (110)
T d1fp1d1 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT 81 (110)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccc
Confidence 46788999999999999999999999999999999865 4567999999999875 12323447999999999999997
Q ss_pred ccccC--CCCCCcceecChhchhhhcCC
Q 017595 100 CSLSS--AGDNQRLYSLAPVAKYFVLNQ 125 (369)
Q Consensus 100 ~~~~~--~~~~~~~y~~t~~~~~~~~~~ 125 (369)
+.... ++.....|.+|+.++.|+.++
T Consensus 82 ~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 82 STTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred cccccCCCCCeeeEEecchhhHhhcCCC
Confidence 54322 121234799999999999865
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.53 E-value=1.7e-14 Score=121.29 Aligned_cols=109 Identities=10% Similarity=0.044 Sum_probs=88.8
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------------------CCceEEeCC
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------------------RGVKHIGGN 257 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~rv~~~~~d 257 (369)
+...+. ..+..+|||||||+|..+..|+++ +.+++++|+ +.+++.+++. ..+.+..+|
T Consensus 12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 344454 667899999999999999999987 578999999 8888876541 346888888
Q ss_pred CCCCCC--C--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 258 MFERIP--K--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 258 ~~~~~p--~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
+++..+ . .|+|+++.++|++++++...++++++++|||||++++.......
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 887322 1 29999999999999988999999999999999999887765543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3e-14 Score=126.84 Aligned_cols=155 Identities=18% Similarity=0.128 Sum_probs=98.5
Q ss_pred HhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHH----hCCCC--eEEEcch-hHHHHhCCC----C---CCceE--Ee
Q 017595 192 IVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITS----RYPHI--EGVNFDL-PHVIQNAPS----Y---RGVKH--IG 255 (369)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~----~---~rv~~--~~ 255 (369)
..+..++..+...+...+|||||||+|.++..+++ .+++. +++++|. +.+++.+++ . .++.+ ..
T Consensus 26 ~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 105 (280)
T d1jqea_ 26 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK 105 (280)
T ss_dssp HTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence 34455555554344556899999999998777655 46654 5689998 777766542 2 33333 33
Q ss_pred CCCC-------CCCCC-C-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHH-
Q 017595 256 GNMF-------ERIPK-G-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDII- 325 (369)
Q Consensus 256 ~d~~-------~~~p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~- 325 (369)
.++. .+.+. . |+|++.++|||++| ..++|++++++|+|||.++|....... .+. . .+..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~----~~~-~--l~~~~~~ 176 (280)
T d1jqea_ 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSS----GWD-K--LWKKYGS 176 (280)
T ss_dssp SCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTS----HHH-H--HHHHHGG
T ss_pred hhhhhhcchhcccCCCCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcc----hHH-H--HHHHHHH
Confidence 3331 12222 2 99999999999965 468999999999999999988764221 111 0 010000
Q ss_pred HHHhhcCCccCCHHHHHHHHHHcCCcceeE
Q 017595 326 MLMQFSGGRERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 326 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
..........++.++|.++|++.||+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 177 RFPQDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp GSCCCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred hcCCCcccccCCHHHHHHHHHHCCCceEEE
Confidence 000011234568899999999999985543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=1.6e-14 Score=125.72 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCC--CEEEe-ccccccCCh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKG--DAILM-KWILHNWDD 279 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~v~~-~~vlh~~~d 279 (369)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++.....++.+|+.+ +++.+ |+|++ ..++||++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 36679999999999999999876 468999999 8899888765444577888887 66644 99987 579999976
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. .++|+++++.|||||.+++..+
T Consensus 119 ~--~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 K--DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp H--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred H--HHHHHHHHhhcCcCcEEEEEEC
Confidence 5 5789999999999999988653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1.2e-13 Score=117.05 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=100.8
Q ss_pred ccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC---CEEEec
Q 017595 201 YNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG---DAILMK 271 (369)
Q Consensus 201 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~---D~v~~~ 271 (369)
++ +++..+|||||||+|.++..+++..|+.+++++|+ |.+++.+++ .+++.++.+|... +.+.. ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 54 77889999999999999999999999999999999 888876543 4789999999887 33321 232333
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
+.+++. .+...+++++++.|||||++++.......+...+... ..++..+.+ ++||+
T Consensus 131 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~--------------------~~~~~~~~l-~~gf~ 187 (209)
T d1nt2a_ 131 QDIAQK--NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEE--------------------VFKSVLKEM-EGDFK 187 (209)
T ss_dssp ECCCST--THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHH--------------------HHHHHHHHH-HTTSE
T ss_pred ecccCh--hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHH--------------------HHHHHHHHH-HcCCE
Confidence 445555 4567899999999999999999875322111110000 011122233 47999
Q ss_pred ceeEEEec---CceeEEEEeC
Q 017595 352 GVNYECFV---CNFCIIEFIK 369 (369)
Q Consensus 352 ~~~~~~~~---~~~~vi~~~~ 369 (369)
+++...+. ..+.++-+|+
T Consensus 188 i~E~i~L~P~~~~H~~v~~~r 208 (209)
T d1nt2a_ 188 IVKHGSLMPYHRDHIFIHAYR 208 (209)
T ss_dssp EEEEEECTTTCTTEEEEEEEE
T ss_pred EEEEEccCCCccCcEEEEEEe
Confidence 99988775 3566666653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.3e-13 Score=117.37 Aligned_cols=129 Identities=12% Similarity=-0.020 Sum_probs=100.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------------------CCCceEEeCCCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------------------YRGVKHIGGNMF 259 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~ 259 (369)
.....+|||+|||+|..+..|++. +.+++++|. +.+++.+++ ..++++..+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 556789999999999999999987 468999999 777765321 147899999998
Q ss_pred C-C-CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCC--
Q 017595 260 E-R-IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGG-- 333 (369)
Q Consensus 260 ~-~-~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 333 (369)
+ + .+.+ |+|+...++|++++++...++++++++|||||++++.....+.... .|
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~--------------------~gpp 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH--------------------PGPP 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC--------------------CCSS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC--------------------CCCC
Confidence 7 2 3332 9999999999999999999999999999999998888766543211 11
Q ss_pred ccCCHHHHHHHHHHcCCcceeE
Q 017595 334 RERTTQEFMALANEAGFNGVNY 355 (369)
Q Consensus 334 ~~~t~~e~~~ll~~aGf~~~~~ 355 (369)
...+.+++.++|.. +|.+..+
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEE
Confidence 12478999999954 6765443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=6.5e-14 Score=123.79 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=80.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCC-CCCCC--CEEEeccccccCCh
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFE-RIPKG--DAILMKWILHNWDD 279 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh~~~d 279 (369)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ +++.+ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4668999999999999999999999999999999 888887764 4899999999988 77654 99999888876
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 280 EHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 280 ~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+++++|+|||||++++..+.
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEEC
T ss_pred ------HHHHHHHhCCCcEEEEEeeC
Confidence 45689999999999998763
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.43 E-value=1e-13 Score=121.43 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=83.0
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC-CC-CC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE-RI-PK- 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-p~- 264 (369)
.+++.+. +...+|||||||+|..+..+++... .+++++|+ +.+++.|+. ..++.+..+|+.. ++ +.
T Consensus 16 ~lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~ 92 (252)
T d1ri5a_ 16 CLIRLYT--KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 92 (252)
T ss_dssp HHHHHHC--CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred HHHHHhC--CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence 3445442 4668999999999999999888743 37899999 888877653 2479999999976 43 23
Q ss_pred C-CEEEeccccccC--ChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 G-DAILMKWILHNW--DDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~-D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
. |+|++..++||+ +.++..++|+++.+.|+|||++++..
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 3 999999999997 44667899999999999999998754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.7e-14 Score=126.70 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=94.5
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CC----------------------------
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RG---------------------------- 250 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~r---------------------------- 250 (369)
.+..+|||||||+|.++..++.... .+++++|+ +.+++.+++. ..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 3567999999999988766655432 36899999 8887766431 00
Q ss_pred --c-eEEeCCCCC-----CCCCC--CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhh
Q 017595 251 --V-KHIGGNMFE-----RIPKG--DAILMKWILHNWDD--EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAARE 318 (369)
Q Consensus 251 --v-~~~~~d~~~-----~~p~~--D~v~~~~vlh~~~d--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 318 (369)
+ .....+... +.+.+ |+|++..++||++. ++...+++++++.|||||++++.+..........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~----- 203 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG----- 203 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-----
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec-----
Confidence 0 112222211 33333 99999999999853 4677999999999999999999887643211000
Q ss_pred hhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEEEe
Q 017595 319 ASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYECF 358 (369)
Q Consensus 319 ~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 358 (369)
+ ........+.++|+++|++|||+++++...
T Consensus 204 ----~-----~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 204 ----K-----REFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp ----T-----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----c-----ccccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 000223468999999999999998887443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=4.2e-13 Score=112.69 Aligned_cols=104 Identities=14% Similarity=0.263 Sum_probs=80.9
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCCCCC-
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERIPKG- 265 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~p~~- 265 (369)
-+++.++ ..+..+|||||||+|.++..+++.+++ ++++|. +.+++.+++ ..+++++.+|+++.++..
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3455565 567789999999999999999998875 555666 666665542 256899999998865543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|+|++..++|+. .+...++++++.+.|+|||++++..
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999999888764 3446789999999999999988754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.41 E-value=9.1e-14 Score=121.28 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC-CCCCC-CEEEec-ccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE-RIPKG-DAILMK-WILHN 276 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~v~~~-~vlh~ 276 (369)
...+|||||||+|.++..+++++. +++++|+ +.+++.|++. .+++++.+|+.+ ++++. |+|++. ++++|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 457999999999999999999864 7899999 8888877542 479999999987 55554 988865 67877
Q ss_pred C-ChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 277 W-DDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 277 ~-~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
+ +.++..++|+++++.|+|||++++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6 456778999999999999998886
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.41 E-value=7.4e-14 Score=121.73 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=103.3
Q ss_pred HHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEE
Q 017595 181 VFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHI 254 (369)
Q Consensus 181 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~ 254 (369)
.|..+.+..++..++.+.+.. ....+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. -+++++
T Consensus 98 aFGTG~H~TT~l~l~~l~~~~---~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~ 172 (254)
T d2nxca1 98 AFGTGHHETTRLALKALARHL---RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254)
T ss_dssp ----CCSHHHHHHHHHHHHHC---CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred ccCccccchhhHHHHHHHhhc---CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence 566655566666665554433 356899999999999999887754 57899999 8888777642 356888
Q ss_pred eCCCCCCCCC--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 255 GGNMFERIPK--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 255 ~~d~~~~~p~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
.+|+.+..+. .|+|+++...+ ...++++.++++|||||++++.+....
T Consensus 173 ~~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~~------------------------- 222 (254)
T d2nxca1 173 EGSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILKD------------------------- 222 (254)
T ss_dssp ESCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEGG-------------------------
T ss_pred eccccccccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecchh-------------------------
Confidence 9988764443 49998764443 346789999999999999998765311
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEecCceeE
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFVCNFCI 364 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v 364 (369)
..+++.+.++++||++++.....+..++
T Consensus 223 ----~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l 250 (254)
T d2nxca1 223 ----RAPLVREAMAGAGFRPLEEAAEGEWVLL 250 (254)
T ss_dssp ----GHHHHHHHHHHTTCEEEEEEEETTEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEEEEEECCEEEE
Confidence 1456788899999999998877664443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.7e-14 Score=120.44 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=90.6
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-----CCceEEeCCCCC---CCCCC--CEEE-----
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-----RGVKHIGGNMFE---RIPKG--DAIL----- 269 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~v~----- 269 (369)
...+|||||||+|..+..+++..+ .+++++|+ |.+++.+++. .++.++.+|+.. +++.+ |+|+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 457999999999999999988765 47899999 8888876542 467777777643 44543 6665
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAG 349 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 349 (369)
....++|+ .+...++++++++|||||++++.+.... ........+ .......+.+...+.++|
T Consensus 132 ~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~-------~~~~~~~~~--------~~~~~~~~~~~~~l~~ag 194 (229)
T d1zx0a1 132 LSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSW-------GELMKSKYS--------DITIMFEETQVPALLEAG 194 (229)
T ss_dssp CBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHH-------HHHTTTTCS--------CHHHHHHHHTHHHHHHTT
T ss_pred cccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCc-------chhhhhhhh--------hcchhhhhHHHHHHHHCC
Confidence 57778887 5567899999999999999987443210 000000000 111112456677888999
Q ss_pred CcceeEE
Q 017595 350 FNGVNYE 356 (369)
Q Consensus 350 f~~~~~~ 356 (369)
|+..++.
T Consensus 195 F~~~~i~ 201 (229)
T d1zx0a1 195 FRRENIR 201 (229)
T ss_dssp CCGGGEE
T ss_pred CeeEEEE
Confidence 9977664
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3e-13 Score=119.12 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=93.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------C--------------------------
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------R-------------------------- 249 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~-------------------------- 249 (369)
.+..+|||||||+|.+....+..... +++++|. +.+++.+++. +
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 45689999999999776444433332 7999999 8877755321 0
Q ss_pred --CceEEeCCCCCC-------CCC-C-CEEEeccccccCCh--hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHH
Q 017595 250 --GVKHIGGNMFER-------IPK-G-DAILMKWILHNWDD--EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAA 316 (369)
Q Consensus 250 --rv~~~~~d~~~~-------~p~-~-D~v~~~~vlh~~~d--~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~ 316 (369)
...+...|+.++ .+. . |+|++.++||+.+. ++..++|++++++|||||+|++.+..........
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~--- 208 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG--- 208 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET---
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC---
Confidence 013445666542 112 2 99999999999853 4578999999999999999999887643211000
Q ss_pred hhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcceeEE
Q 017595 317 REASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGVNYE 356 (369)
Q Consensus 317 ~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 356 (369)
. . .+ .....+.++++++|+++||++++..
T Consensus 209 ---~----~---~~-~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 209 ---E----A---RL-TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp ---T----E---EE-ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ---C----c---cc-ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 0 00 1123589999999999999988654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.8e-12 Score=117.59 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=89.3
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC---------------CCCCceEEeCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP---------------SYRGVKHIGGN 257 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------------~~~rv~~~~~d 257 (369)
...+++.+. +++..+|||||||+|.++..++..++..+++|+|+ +.+++.++ +..+++++.+|
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 346677776 77889999999999999999999999889999999 77766553 23679999999
Q ss_pred CCC-CCCC----CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 258 MFE-RIPK----GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 258 ~~~-~~p~----~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
+.+ ++.. +|+|++... .|. ++..+.|+++++.|||||++++.+.+.+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~-~f~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNF-AFG--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCT-TTC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcce-ecc--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence 988 5432 377776554 445 566789999999999999999988766543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=3.5e-12 Score=107.34 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=77.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCCC--CEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPKG--DAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~--D~v~~~~vl 274 (369)
...|||||||+|.++..+++.+|+..++++|. +..+..+.+ .++|.++.+|+.. . ++.+ |.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 35899999999999999999999999999998 666654432 3789999999876 2 5544 888877776
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWDDEH------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~d~~------~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+..... ...+|+.++++|||||.|.|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 6543322 1479999999999999998864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=1.8e-12 Score=112.30 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 264 (369)
+..++..++ .....+|||+|||+|.++..+++. .|+.+++.+|. +..++.|++ ..++++..+|+.+.++.
T Consensus 74 ~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~ 152 (250)
T d1yb2a1 74 ASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 152 (250)
T ss_dssp -------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence 345666665 778899999999999999999987 68889999999 777776653 26899999999886654
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 265 G--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
. |+|++ +++++ ..+|++++++|||||++++..++
T Consensus 153 ~~fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp CCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESS
T ss_pred ceeeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEeCC
Confidence 3 98875 34443 36799999999999999986553
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=1.6e-11 Score=104.92 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=98.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhC----CCCCCceEEeCCCCCC--CC--CC--CEEEec
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNA----PSYRGVKHIGGNMFER--IP--KG--DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~~--~p--~~--D~v~~~ 271 (369)
+++..+|||+|||+|.++..+++.. |+-+++++|+ +.+++.+ +...++..+.+|...+ .+ .. |+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999984 8889999999 7777654 3457788888888662 22 12 55543
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFN 351 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 351 (369)
.+++. ++...+++++++.|||||+++|.......+..... ....++..++ .++||+
T Consensus 150 -d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~~v~~~v~~l-~~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------EQVFREVERE-LSEYFE 205 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------HHHHHHHHHH-HHTTSE
T ss_pred -Ecccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------HHHHHHHHHH-HHcCCE
Confidence 44444 55678999999999999999987543222111100 0012234444 467999
Q ss_pred ceeEEEecC---ceeEEEEeC
Q 017595 352 GVNYECFVC---NFCIIEFIK 369 (369)
Q Consensus 352 ~~~~~~~~~---~~~vi~~~~ 369 (369)
+++.+.+.+ .+.++.++|
T Consensus 206 iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred EEEEEcCCCCCCceEEEEEEe
Confidence 999887754 478888876
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=2.2e-12 Score=115.25 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC----------CCceEEeCCCCC---CCC--CC-CE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY----------RGVKHIGGNMFE---RIP--KG-DA 267 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~---~~p--~~-D~ 267 (369)
.+..+|||||||+|..+..|+++ +.+++++|+ +.+++.|++. .+..+...|+.. ++| .. |+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 35679999999999999999987 468999999 8888876532 245566677654 222 33 77
Q ss_pred EEe-ccccccCCh-----hHHHHHHHHHHHhCCCCCEEEEE
Q 017595 268 ILM-KWILHNWDD-----EHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 268 v~~-~~vlh~~~d-----~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
|++ ..+++|+++ ++..++|++++++|||||+|++.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 765 468998865 45778999999999999998874
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=4.2e-11 Score=104.88 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=99.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC------CCceEEeCCCCCCCCC-C-CEEEeccc--
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY------RGVKHIGGNMFERIPK-G-DAILMKWI-- 273 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~v~~~~v-- 273 (369)
....+|||+|||+|..+..++..+|+.+++++|. +..++.|++. .+|+++.+|++++++. . |+|+++--
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 8888776642 6899999999997664 3 99988632
Q ss_pred -----------cccCCh----------hHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcC
Q 017595 274 -----------LHNWDD----------EHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSG 332 (369)
Q Consensus 274 -----------lh~~~d----------~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 332 (369)
+.+-|. ....++++.+.+.|+|||.+++ |.-.
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~-------------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW-------------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS--------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc--------------------------
Confidence 221111 2345789999999999998876 3211
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEec-CceeEEEE
Q 017595 333 GRERTTQEFMALANEAGFNGVNYECFV-CNFCIIEF 367 (369)
Q Consensus 333 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~ 367 (369)
...+.+.+++++.||+.+++...- +..-++.+
T Consensus 240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred ---hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence 013567888999999988877655 43445544
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=6e-12 Score=110.25 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=96.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK 264 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~ 264 (369)
+..++..++ +.+..+|||+|||+|.++..+++.. |+.+++++|. +.+++.|++. +++.+..+|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 446677676 8889999999999999999999884 8899999999 8888877642 5788888887665543
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHH
Q 017595 265 G--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFM 342 (369)
Q Consensus 265 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 342 (369)
. |.|+ ++++++ ..+|+++.++|||||++++..++.. ..++..
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 6554 567654 4789999999999999998765421 023455
Q ss_pred HHHHHcCCcceeEEE
Q 017595 343 ALANEAGFNGVNYEC 357 (369)
Q Consensus 343 ~ll~~aGf~~~~~~~ 357 (369)
+.+++.||..+++..
T Consensus 215 ~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 215 KKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCceeEEEEE
Confidence 666788988776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=7.8e-12 Score=108.92 Aligned_cols=104 Identities=11% Similarity=0.197 Sum_probs=86.9
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC---------CCCceEEeCCCCC-C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS---------YRGVKHIGGNMFE-R 261 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~ 261 (369)
+..++..++ .....+|||+|||+|.++..|++. .|+-+++.+|. ++.++.|++ .+++.++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 456667676 788899999999999999999998 79999999999 888887754 2689999999987 6
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 262 IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 262 ~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
++.. |.|++ |++++ ..++.+++++|||||++++..++
T Consensus 164 ~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred ccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCc
Confidence 7654 98875 46555 37899999999999999988765
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.21 E-value=3.8e-12 Score=105.92 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=79.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCC-CCC--C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFE-RIP--K 264 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p--~ 264 (369)
.++..+. ..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ ..+ .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 3444455 67789999999999999999988754 7888998 8888877642 689999999876 333 3
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+|++....+++ ..+++.+.+.|||||++++...
T Consensus 101 ~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 4999988766554 4689999999999999987654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=4.1e-11 Score=100.65 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=73.9
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC---CCCCC--CEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE---RIPKG--DAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~--D~v~~~~vl 274 (369)
...|||||||+|.++..+++.+|+..++++|. +.++..+.+ .+++.++.+|+.. .++.. |.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 45899999999999999999999999999998 666665432 3789999999876 24543 777655433
Q ss_pred ccCChhH-------HHHHHHHHHHhCCCCCEEEEEe
Q 017595 275 HNWDDEH-------CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 275 h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e 303 (369)
. |+... ...+|+.+++.|+|||.|.+..
T Consensus 112 P-w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 P-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp C-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred c-ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 2 33221 1479999999999999998753
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=1.1e-11 Score=105.26 Aligned_cols=99 Identities=14% Similarity=0.286 Sum_probs=80.1
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-CCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC-C-
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-PHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP-K- 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~- 264 (369)
..+++.+. ++...+|||||||+|.++..+++.. ++.+++.+|. +.+++.+++ ..++.++.+|..+..+ .
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 35566666 7888999999999999999999875 6789999998 888877664 3788999999887433 2
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 265 -GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 265 -~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
.|+|++..++++.++ .+.+.|||||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 399999999999864 246679999999884
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=1.1e-10 Score=107.54 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=84.8
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---------------CCceE-EeC
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---------------RGVKH-IGG 256 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~rv~~-~~~ 256 (369)
+..+++.++ +....+|||||||+|..+..++..++..+++|+|+ +.+++.|+.. ..+.+ ..+
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 456777776 78889999999999999999999999879999999 8887766531 22333 456
Q ss_pred CCCC-C-----CCCCCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 257 NMFE-R-----IPKGDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 257 d~~~-~-----~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
+++. + ++.+|+|++.+. ++. ++..+.|+++++.|||||+|++.+.+.+..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~-~f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNF-LFD--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCT-TCC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred chhhccccccccccceEEEEecc-cCc--hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 6654 2 223478776654 444 667899999999999999999988766543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=9e-11 Score=100.14 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=78.3
Q ss_pred HHHHhcc-CcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCCC
Q 017595 196 RILDSYN-GFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFER 261 (369)
Q Consensus 196 ~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~ 261 (369)
.+++.+. ..++..+|||||||+|..+..+++. .|..+++++|. +++++.+++ ..++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 4455442 2567789999999999999998886 67889999998 888877653 25789999999874
Q ss_pred CC-C--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 262 IP-K--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 262 ~p-~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.+ . .|+|++..++++.++ .+.+.|||||+|++.-
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 33 2 399999999998864 3567899999999853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3.1e-10 Score=101.75 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC-----------------CCCceEE
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS-----------------YRGVKHI 254 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~~ 254 (369)
+..++..++ +....+|||+|||+|.++..|++. .|+-+++.+|. +..++.|++ .+++.+.
T Consensus 87 ~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 87 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 456777776 888899999999999999999987 68899999998 777776542 2689999
Q ss_pred eCCCCCC---CCCC--CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 255 GGNMFER---IPKG--DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 255 ~~d~~~~---~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.+|+... ++.. |.|++ ++|++. .+|.+++++|||||+|++.-++.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeCCH
Confidence 9998762 2332 88876 444432 57999999999999999876643
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.95 E-value=7e-10 Score=92.34 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=73.6
Q ss_pred CCcceEEEEcCChhHHHHH----HHHh----CCCCeEEEcch-hHHHHhCCCC---------------------------
Q 017595 205 EQIKQLVDVGGGLGVTLNI----ITSR----YPHIEGVNFDL-PHVIQNAPSY--------------------------- 248 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~----l~~~----~p~~~~~~~D~-~~~~~~a~~~--------------------------- 248 (369)
.+..+|+++|||+|.-... +.+. .+++++++.|+ +.+++.|+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4567999999999985433 3433 23457888898 7777765420
Q ss_pred ----------CCceEEeCCCCCC--CC-CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 249 ----------RGVKHIGGNMFER--IP-KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 249 ----------~rv~~~~~d~~~~--~p-~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
..+.+...+...+ .+ .. |+|+|++||++++++...+++++++++|+|||.|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 2356677777662 22 23 9999999999999999999999999999999988874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=4.7e-10 Score=100.92 Aligned_cols=95 Identities=21% Similarity=0.232 Sum_probs=72.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC-------CCCCceEEeCCCCC-CCCCC--CEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP-------SYRGVKHIGGNMFE-RIPKG--DAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh 275 (369)
+.++|||||||+|.++..+++..+. +++++|.+.....+. -.++|.++.+|+.+ +.+.. |+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 4579999999999999988886543 788888733222221 13789999999988 66643 9998887777
Q ss_pred cCChh-HHHHHHHHHHHhCCCCCEEEE
Q 017595 276 NWDDE-HCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 276 ~~~d~-~~~~~L~~~~~~L~pgG~lli 301 (369)
++..+ ....++..+.+.|+|||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 65444 467899999999999998873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=6.8e-10 Score=100.38 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=72.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC-------CCCceEEeCCCCC-CCCCC--CEEEeccccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS-------YRGVKHIGGNMFE-RIPKG--DAILMKWILH 275 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~v~~~~vlh 275 (369)
+.++|||||||+|.++..++++.. .+++++|.+.+++.+++ .+++.++.+|+.+ ++|.. |+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 457999999999999988877653 37888888545444332 3689999999988 66643 9999887777
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCCEEE
Q 017595 276 NWDD-EHCLTLLKNCYEAIPENGKII 300 (369)
Q Consensus 276 ~~~d-~~~~~~L~~~~~~L~pgG~ll 300 (369)
+... .....++....+.|||||+++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 6543 345678888899999999875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.90 E-value=8.7e-10 Score=93.56 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=75.1
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC----CCCCceEEeCCCCCCCCC---CC
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP----SYRGVKHIGGNMFERIPK---GD 266 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~rv~~~~~d~~~~~p~---~D 266 (369)
..+++.++ +.+..+|||||||+|.++..+++... +++.+|. +...+.++ ...++.++.+|....++. .|
T Consensus 60 a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHHhh-hcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 34566666 78889999999999999998888764 5677776 66666543 347899999998875443 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
+|++...+++.++ .+.+.|+|||+|++.
T Consensus 137 ~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 9999999888864 245689999999884
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.2e-09 Score=96.27 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=73.4
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhC------CCCCCceEEeCCCCC-CCCC-C-CEEEeccc
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNA------PSYRGVKHIGGNMFE-RIPK-G-DAILMKWI 273 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a------~~~~rv~~~~~d~~~-~~p~-~-D~v~~~~v 273 (369)
..+.++|||||||+|.++..++++.+ .+++++|. +.+.... ...+++.++.+|..+ +.+. . |+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 33568999999999999999888765 47889998 4443211 113789999999988 5653 3 99999888
Q ss_pred cccCChhH-HHHHHHHHHHhCCCCCEEEE
Q 017595 274 LHNWDDEH-CLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 274 lh~~~d~~-~~~~L~~~~~~L~pgG~lli 301 (369)
.|+...+. ...++....+.|+|||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 88765554 55777778899999998873
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=3.6e-09 Score=87.54 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=85.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCC-C-----
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFE-R----- 261 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~----- 261 (369)
.+++++.+. ......+||++||+|..+..+++++|+.+++++|. +.+++.+++ .+|+.++.++|.+ +
T Consensus 12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 456777676 66778999999999999999999999999999999 899887764 2689999999865 2
Q ss_pred CCC-C-CEEEecccccc--C-----ChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 262 IPK-G-DAILMKWILHN--W-----DDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 262 ~p~-~-D~v~~~~vlh~--~-----~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
.+. . |.|++-.-+.. + .-....+.|..+.+.|+|||+++|+...
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 222 2 77765432211 0 0133558899999999999999998864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.75 E-value=4.1e-09 Score=88.74 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=75.4
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCCC---
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIPK--- 264 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~--- 264 (369)
..+++.+. ..+..+|||||||+|..+..+++... .+++.+|. +..++.+++ ..++.++.+|....++.
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 45556666 77889999999999999998887643 45666666 766666553 38999999999885443
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 265 GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
.|.|++...+.+.|+. +.+.|+|||+|++.-
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEEE
Confidence 3999999999887642 445799999998753
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.74 E-value=7.1e-09 Score=87.87 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=76.2
Q ss_pred HHHHhcc-CcCCcceEEEEcCChhHHHHHHHHh------CCCCeEEEcch-hHHHHhCCCC-----------CCceEEeC
Q 017595 196 RILDSYN-GFEQIKQLVDVGGGLGVTLNIITSR------YPHIEGVNFDL-PHVIQNAPSY-----------RGVKHIGG 256 (369)
Q Consensus 196 ~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~ 256 (369)
.+++.+. .+.+..+|||||||+|..+..+++. .+..+++.+|. +..++.+++. .++.++.+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 4555542 2667899999999999999888776 34568999998 7777766432 58999999
Q ss_pred CCCCCCCC---CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEe
Q 017595 257 NMFERIPK---GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 257 d~~~~~p~---~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e 303 (369)
|..+..+. .|.|++...+.+.|+ .+.+.|+|||++++.-
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPV 190 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEE
Confidence 99884432 399999999988764 2467999999998753
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.62 E-value=2e-08 Score=87.17 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=87.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCCC--CCEEEecccc
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIPK--GDAILMKWIL 274 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~v~~~~vl 274 (369)
.+..+|||+|||+|.++..++.+. ..+++.+|+ |..++.+++ .++|+++.+|.++-.+. .|.|++...
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p- 183 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 183 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC-
Confidence 467899999999999999998774 568999999 888776653 26799999999883333 398886532
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCCCcchHHHhhhhhhhHHHHHhhcCCccCCHHHHHHHHHHcCCcce
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVTPEATAAAREASMTDIIMLMQFSGGRERTTQEFMALANEAGFNGV 353 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 353 (369)
.....+|..+.+.|+|||.+.+.+.+.... ......+.+.++..+.||++.
T Consensus 184 -----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred -----CchHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 223467888999999999998776642211 011235567778888999864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-06 Score=75.55 Aligned_cols=72 Identities=8% Similarity=0.025 Sum_probs=56.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC----C---CC--CCEE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER----I---PK--GDAI 268 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~----~---p~--~D~v 268 (369)
...++||+|||+|..+..++.+.|+++++++|. +.+++.|++. +++.++..+.... + .. .|+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 457999999999999999999999999999999 8888877642 6788887654432 1 12 3999
Q ss_pred EeccccccC
Q 017595 269 LMKWILHNW 277 (369)
Q Consensus 269 ~~~~vlh~~ 277 (369)
+++--.+.-
T Consensus 141 vsNPPY~~~ 149 (250)
T d2h00a1 141 MCNPPFFAN 149 (250)
T ss_dssp EECCCCC--
T ss_pred EecCccccc
Confidence 999887753
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.35 E-value=1.3e-07 Score=75.16 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=67.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCC--CCC--CCCEEEeccc
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFE--RIP--KGDAILMKWI 273 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~p--~~D~v~~~~v 273 (369)
...+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|..+ ..+ ..|+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4689999999999999998888764 8999998 777665433 2679999999876 222 2399988643
Q ss_pred cccCChhHHHHHHHHHH--HhCCCCCEEEEE
Q 017595 274 LHNWDDEHCLTLLKNCY--EAIPENGKIIII 302 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~--~~L~pgG~lli~ 302 (369)
.. ......+|..+. +.|+|||.+++-
T Consensus 93 y~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 YA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 22 234456666654 468999987753
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=1.1e-07 Score=79.90 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=69.9
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCCC-------C--CCE
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERIP-------K--GDA 267 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-------~--~D~ 267 (369)
++++|||||||+|..+..+++..+ +.+++.+|. +...+.++. .++|+++.||..+-++ . .|+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 478999999999999999999875 689999998 777776653 2679999999876222 1 288
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 268 ILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 268 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
|++-+ ..........+.++.+.|+|||.|+ +|.+.
T Consensus 136 ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv-~Ddvl 170 (214)
T d2cl5a1 136 VFLDH---WKDRYLPDTLLLEKCGLLRKGTVLL-ADNVI 170 (214)
T ss_dssp EEECS---CGGGHHHHHHHHHHTTCEEEEEEEE-ESCCC
T ss_pred eeecc---cccccccHHHHHHHhCccCCCcEEE-EeCcC
Confidence 87653 2211223345777788999999655 45444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.31 E-value=1.2e-07 Score=84.28 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=75.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----------CCCceEEeCCCCC---CCCC-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----------YRGVKHIGGNMFE---RIPK-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~---~~p~-~D~v 268 (369)
+.+++||.||+|.|..+.++++..|..+++.+++ |.+++.+++ .+|++++.+|... ..+. .|+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4678999999999999999998888889999999 888876543 3799999999987 2333 3999
Q ss_pred Eeccc--ccc-CChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 017595 269 LMKWI--LHN-WDDEH--CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 269 ~~~~v--lh~-~~d~~--~~~~L~~~~~~L~pgG~lli~e 303 (369)
+.-.. ... -+... ..++++.+++.|+|||.+++.-
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 85432 111 01111 2579999999999999887754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.7e-07 Score=77.58 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=74.3
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC--------CC-CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI--------PK-GD 266 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~--------p~-~D 266 (369)
.++++|||||||+|..+.++++..| +.+++.+|. +...+.+++ .++++++.||..+.. +. .|
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 3578999999999999999999976 688999998 776666543 378999999986521 22 28
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
+|+..+ ..+.-...++.+.+.|+|||.+++-+...
T Consensus 138 ~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 138 VAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 887653 22445678899999999999877755543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.20 E-value=7e-07 Score=73.54 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=51.8
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-CCCceEEeCCCCCCCCCCCEEEecccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-YRGVKHIGGNMFERIPKGDAILMKWIL 274 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vl 274 (369)
.++|||+|||+|.++..++...+. +++++|. +.+++.+++ ..+++++.+|+.+.-...|+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 589999999999999887776554 7888888 777777665 378999999986622234999987543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.19 E-value=9.6e-07 Score=76.43 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=53.1
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCCCCC----CCEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFERIPK----GDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~----~D~v~~~ 271 (369)
+..+++|+|||+|..+..++ .+|+.+++++|. +..++.+++. .++.+..+|++++.+. .|+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 45789999999999999987 579999999999 8888776542 5788999999885442 3999876
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.17 E-value=4.2e-07 Score=79.70 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=74.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCCC-CEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPKG-DAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~~-D~v~ 269 (369)
+.+.+||-||+|.|..+.++++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+.. |+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998877788999999 888887654 3799999999976 22333 9998
Q ss_pred eccccccCChhH---HHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILHNWDDEH---CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+-..-....... ...+++.+++.|+|||.+++.-.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 653221111110 25899999999999998887643
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.16 E-value=4.9e-06 Score=70.45 Aligned_cols=85 Identities=12% Similarity=0.282 Sum_probs=62.0
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHh----CCCCCCceEEeCCCCC-CCCCC-C
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQN----APSYRGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~~~rv~~~~~d~~~-~~p~~-D 266 (369)
.++.+++..+ .....+|||||||+|.++..|++....+.++..| +..++. ....++++++.+|+++ +++.. .
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D-~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID-HKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC-HHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeec-cchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence 4567777665 7788999999999999999999986554444444 444443 3446899999999998 77755 5
Q ss_pred EEEeccccccCCh
Q 017595 267 AILMKWILHNWDD 279 (369)
Q Consensus 267 ~v~~~~vlh~~~d 279 (369)
..+..+.=++.+.
T Consensus 87 ~~vv~NLPYnIss 99 (235)
T d1qama_ 87 YKIFGNIPYNIST 99 (235)
T ss_dssp CEEEEECCGGGHH
T ss_pred ceeeeeehhhhhH
Confidence 5566666666644
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=1.4e-06 Score=73.48 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=73.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC---------C-CCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI---------P-KGD 266 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---------p-~~D 266 (369)
++++|||||+++|..+..+++..| +.+++.+|. +...+.|++ .++|+++.+|..+-+ . ..|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 578999999999999999999987 678888988 776666554 268999999997521 1 139
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+|++-. ........++.+.+.|+|||.+++-+..
T Consensus 139 ~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 139 FIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp EEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred EEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 998753 2244668899999999999977665543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=6.6e-07 Score=77.80 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=74.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~D~v~ 269 (369)
..+.+||-||+|.|..+.++++..+..+++.+|+ |.+++.+++ .+|++++.+|... ..+. .|+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4678999999999999999998877788999999 888887643 3799999999876 2233 39998
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCCEEEEEe
Q 017595 270 MKWILHNWDDEH--CLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 270 ~~~vlh~~~d~~--~~~~L~~~~~~L~pgG~lli~e 303 (369)
.-..-..-+... .+.+++.+++.|+|||.++..-
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 653211101010 3478999999999999888664
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.12 E-value=7.6e-07 Score=79.61 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=72.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---C---CC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---I---PK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~---p~-~D~v~ 269 (369)
++..+|||+|||+|.++..++.... .+++.+|. +..++.+++. ++++++.+|+++. + .. .|+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4568999999999999999887754 38999999 7777766542 5789999998762 1 12 39999
Q ss_pred eccccccCChh-------HHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 270 MKWILHNWDDE-------HCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 270 ~~~vlh~~~d~-------~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+.-.-..-... .-.++++.+.++|+|||+|+.....
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 75432211111 1345888899999999998887643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.12 E-value=8e-07 Score=77.44 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------------CCCceEEeCCCCC---CCCC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------------YRGVKHIGGNMFE---RIPK 264 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~---~~p~ 264 (369)
..+.+||.||+|.|..+.++++ +|..+++.+|+ |.+++.+++ .+|++++.+|... .-..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 4678999999999999999886 45568999999 888886642 4789999999875 1122
Q ss_pred CCEEEeccccccCChhH---HHHHHHHHHHhCCCCCEEEEEec
Q 017595 265 GDAILMKWILHNWDDEH---CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.|+|++-.. ....... ...+++.+++.|+|||.+++.-.
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 399986433 2221111 24789999999999998887643
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=6.6e-07 Score=78.17 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=75.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCCC-CEE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPKG-DAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~~-D~v 268 (369)
.+.+++||-||+|.|..+.++++..+..+++.+|+ |.+++.+++ .+|++++.+|... ..++. |+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 34678999999999999999998777889999999 898887754 3799999999876 23333 999
Q ss_pred EeccccccCChhH---HHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWILHNWDDEH---CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.-. .+...... ...+++.+++.|+|||.+++.-.
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 8653 22221111 23789999999999998887644
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.07 E-value=2.9e-06 Score=72.37 Aligned_cols=90 Identities=13% Similarity=0.260 Sum_probs=68.2
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----CCCceEEeCCCCC-CCCCC-C
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----YRGVKHIGGNMFE-RIPKG-D 266 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-D 266 (369)
++.+++... .....+|||||||+|.++..|++... +++++|. +..++.+++ .++++++.+|+++ +++.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 456777676 77889999999999999999999854 5777777 566665554 3689999999999 77755 6
Q ss_pred EEEeccccccCChhHHHHHH
Q 017595 267 AILMKWILHNWDDEHCLTLL 286 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L 286 (369)
..+..+.=++.+.+-..+++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 66667777888765444444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.06 E-value=9.2e-07 Score=77.83 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=72.6
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC-CCEEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK-GDAIL 269 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~D~v~ 269 (369)
+.+.+||-||+|.|..+.++++..|-.+++.+++ +.+++.+++ .+|++++.+|..+ ..+. .|+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4678999999999999999998777678999999 888886654 2799999999876 2233 39998
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 270 MKWILHNWDDE--HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 270 ~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.-..--.-+.. -...+++.+++.|+|||.++..-.
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 65321111111 135789999999999998887643
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=1.2e-06 Score=76.63 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC----------CCCceEEeCCCCC---CCCC--CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS----------YRGVKHIGGNMFE---RIPK--GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~--~D~v 268 (369)
+++.+||=||+|.|..+.++++..|-.+++.+|+ |.+++.+++ .+|++++.+|.++ ..++ .|+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4678999999999999999998777678999999 888887764 3899999999876 2333 3999
Q ss_pred EeccccccCChhH---HHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWILHNWDDEH---CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~vlh~~~d~~---~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.-.. ....... ...+++.+++.|+|||.+++.-.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 86432 1111111 35799999999999998887654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.01 E-value=1.1e-06 Score=78.32 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=70.4
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCC---C---CC-CCEEEec
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFER---I---PK-GDAILMK 271 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~---p~-~D~v~~~ 271 (369)
...+|||++||+|.++.+++.. ..+++.+|. +..++.+++ .++++++.+|.++. + .. .|+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4689999999999999998764 347889998 777776654 26799999998761 1 12 3999875
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 272 WILHNWDD-------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh~~~d-------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
---...+. ..-.++++.+.+.|+|||.|+....
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 33211111 1234788999999999998887654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.95 E-value=7.4e-06 Score=67.73 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=61.3
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCCCCCCCCEEEeccccccCChh
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFERIPKGDAILMKWILHNWDDE 280 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~ 280 (369)
..+|||+|||+|.++..++.+.+ .+++++|. +.+++.+++ ..+++++.+|........|+|++.--.......
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~~ 125 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKH 125 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSSTT
T ss_pred CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccccc
Confidence 47999999999999998877654 48889998 777765543 256788888886633335999987665433222
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 281 HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 281 ~~~~~L~~~~~~L~pgG~lli~e 303 (369)
....++..... +++.+....
T Consensus 126 ~d~~~l~~~~~---~~~~v~~ih 145 (201)
T d1wy7a1 126 ADRPFLLKAFE---ISDVVYSIH 145 (201)
T ss_dssp TTHHHHHHHHH---HCSEEEEEE
T ss_pred ccHHHHHHHHh---hcccchhcc
Confidence 22344554433 344444443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=3.8e-06 Score=68.46 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=66.5
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC--C-CCC-CCEEEeccccc
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE--R-IPK-GDAILMKWILH 275 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p~-~D~v~~~~vlh 275 (369)
..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..++.++.+|.++ . ... .|+|++---..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 579999999999999999988764 7888888 766665443 3678999999876 2 222 39999976533
Q ss_pred cCChhHHHHHHHHHHH--hCCCCCEEEEE
Q 017595 276 NWDDEHCLTLLKNCYE--AIPENGKIIII 302 (369)
Q Consensus 276 ~~~d~~~~~~L~~~~~--~L~pgG~lli~ 302 (369)
. ....+++..+.+ .|+|+|.+++-
T Consensus 123 ~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 R---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp T---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred c---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2 334456666655 58999877663
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=4.6e-05 Score=61.53 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=79.3
Q ss_pred hHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcchhHHHHhCCCCCCceEEeCCCCC-CC------
Q 017595 191 SIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDLPHVIQNAPSYRGVKHIGGNMFE-RI------ 262 (369)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~------ 262 (369)
.+.+.++.+++.-+++..+|||+||+.|.++..+.+. .+..+++++|+.. ....+++.++.+|+.+ ..
T Consensus 7 afKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----~~~i~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T d1ej0a_ 7 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----MDPIVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp HHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----CCCCTTEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc----ccccCCceEeecccccchhhhhhhh
Confidence 3445677777776678889999999999999998876 4557899999833 2345788999999986 21
Q ss_pred --CC--CCEEEeccccccCChh---------HHHHHHHHHHHhCCCCCEEEEEec
Q 017595 263 --PK--GDAILMKWILHNWDDE---------HCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 263 --p~--~D~v~~~~vlh~~~d~---------~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.. .|+|++-....--... -+...|.-+.+.|+|||.+++=-+
T Consensus 83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 11 2998877664432211 134667778899999999987554
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.83 E-value=2.2e-05 Score=65.55 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=70.2
Q ss_pred HHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-CeEEEcch-hHHHHhCCCCCCceEEeCCCCCC-CCCC-CEEEecc
Q 017595 197 ILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-IEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER-IPKG-DAILMKW 272 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-~p~~-D~v~~~~ 272 (369)
+++.+. .....+|||.|||+|.++..+.++.+. ..++++|. +.....+ .+..++.+|++.. .... |+++...
T Consensus 11 m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~np 86 (223)
T d2ih2a1 11 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNP 86 (223)
T ss_dssp HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred HHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecccC
Confidence 344444 456689999999999999999887665 46888888 4433222 3557788888773 2233 8888775
Q ss_pred ccccCC--h-------------------------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 273 ILHNWD--D-------------------------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 273 vlh~~~--d-------------------------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
...... . .-...++.++.+.|+|||++.++-+
T Consensus 87 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 87 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 532210 0 0124667899999999999887754
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=7.4e-06 Score=67.77 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=71.1
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCC------CCCCceEEeCCCCCCCC--CCCEEEeccccccC
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAP------SYRGVKHIGGNMFERIP--KGDAILMKWILHNW 277 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~ 277 (369)
..+++|||+|.|.-+.-++-.+|+.+++.+|. ..-+...+ ..++++++.....+..+ ..|+|+++.+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~---- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS----
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh----
Confidence 46999999999999999999999999999997 32222211 23689999998887323 2499988776
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.....+++-+...++++|++++.-.
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 2245788999999999999988653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.82 E-value=1.5e-05 Score=69.87 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=71.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC--------CCceEEeCCCCCCC------C-CCCE
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY--------RGVKHIGGNMFERI------P-KGDA 267 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~------p-~~D~ 267 (369)
.....+|||+.||+|.++..++... .+++.+|. +..++.+++. .+++++.+|.++-+ . ..|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 3467899999999999999988764 58999999 7777766541 47999999998622 1 2399
Q ss_pred EEeccc---cc----cCC-hhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 268 ILMKWI---LH----NWD-DEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 268 v~~~~v---lh----~~~-d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
|++--- -. .+. ......+++.+.++|+|||.+++....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 997311 10 011 123456778899999999987766543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.82 E-value=3.1e-06 Score=68.17 Aligned_cols=94 Identities=15% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC-------CCceEEeCCCCCC---CC--CCCEEEec
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY-------RGVKHIGGNMFER---IP--KGDAILMK 271 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p--~~D~v~~~ 271 (369)
....+|||+|||+|.++.+.+.+. .+++.+|. +.+++.+++. .++....+|.+.. .. ..|+|++.
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 466899999999999999988875 47788898 8777766532 3344444443321 11 23999886
Q ss_pred cccccCChh-HHHHHHHHHHHhCCCCCEEEEEe
Q 017595 272 WILHNWDDE-HCLTLLKNCYEAIPENGKIIIID 303 (369)
Q Consensus 272 ~vlh~~~d~-~~~~~L~~~~~~L~pgG~lli~e 303 (369)
--.+ .... ....+++ ...|+|||.+++..
T Consensus 118 PPY~-~~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYA-MDLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTT-SCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred cccc-cCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 4432 2222 2223332 35789999777643
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.81 E-value=3.1e-05 Score=65.09 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=68.8
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHh----CCCCeEEEcch-hHHHHhCC-CCCCceEEeCCCCCC--C---C
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSR----YPHIEGVNFDL-PHVIQNAP-SYRGVKHIGGNMFER--I---P 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~-~~~rv~~~~~d~~~~--~---p 263 (369)
..++..+ ++++|||||++.|..+..++.. .++.+++++|+ +....... ..++++++.+|..+. + .
T Consensus 73 ~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 73 HDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp HHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGS
T ss_pred HHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHH
Confidence 3455444 3689999999999877655433 46789999998 44333222 248999999997652 1 1
Q ss_pred C--CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 264 K--GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 264 ~--~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
. .|+|+.-.. |.. +....-+ .....|+|||+++|-|..
T Consensus 149 ~~~~dlIfID~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 149 EMAHPLIFIDNA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSCSSEEEEESS-CSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred hcCCCEEEEcCC-cch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 2 288776544 654 3333334 467899999999987753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.79 E-value=8.8e-06 Score=72.09 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCCCC------CC-CCEE
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFERI------PK-GDAI 268 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p~-~D~v 268 (369)
....+|||+.||+|.++.+.+... ..+++.+|. +..++.+++ ..+++++.+|.++.+ .. .|+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 457899999999999998876643 346888888 666665432 257999999997621 22 3999
Q ss_pred Eeccc--------cccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 269 LMKWI--------LHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 269 ~~~~v--------lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
++--- ++.. ..+-.++++.+.++|+|||.|++...
T Consensus 222 i~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 87421 1111 12345799999999999998887553
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.77 E-value=1.5e-05 Score=71.03 Aligned_cols=101 Identities=9% Similarity=0.130 Sum_probs=72.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-----CCCCeEEEcch-hHHHHhCCC-----CCCceEEeCCCCCCCCC--CCEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-----YPHIEGVNFDL-PHVIQNAPS-----YRGVKHIGGNMFERIPK--GDAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~--~D~v~~ 270 (369)
.....+|+|.|||+|.++..+.++ .++.+++++|+ +.++..|+. .....+..+|.+...+. .|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 345689999999999999998765 34557889998 666665542 25678888888774333 399998
Q ss_pred ccccccCChhH----------------HHHHHHHHHHhCCCCCEEEEEec
Q 017595 271 KWILHNWDDEH----------------CLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 271 ~~vlh~~~d~~----------------~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.--+......+ -..+++.+.+.|+|||+++++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 86543221111 22479999999999999877654
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.71 E-value=1.6e-05 Score=54.41 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=48.9
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVA 118 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~ 118 (369)
+.|++.+...+ .|.|+.|||+.+|+ ++.-+.|+|..|+..|++.++ ++++|++++..
T Consensus 8 l~IL~~~a~~~--~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~------~~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK------KDKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC------TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC------CCCCEeecHHH
Confidence 46788887754 58999999999999 999999999999999999985 45789988654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=3.6e-05 Score=62.24 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=78.6
Q ss_pred HHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--CCCceEEeCCCCC-C-----CC-
Q 017595 194 MNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--YRGVKHIGGNMFE-R-----IP- 263 (369)
Q Consensus 194 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~-----~p- 263 (369)
.+++++.+. ......++|..+|.|..+..++++ +.+++++|. |.+++.++. .+++.++.++|.+ . ..
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence 456777665 667789999999999999999997 458899999 888776654 4789999998865 1 11
Q ss_pred C-CCEEEecccc-----ccCCh--hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 264 K-GDAILMKWIL-----HNWDD--EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 264 ~-~D~v~~~~vl-----h~~~d--~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. .|.|++-.-+ .+-.. ......|....+.|+|||+++++..
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1 2777653222 11100 1234578999999999999998886
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.60 E-value=2.3e-05 Score=63.53 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=67.5
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC-------CCCceEEeCCCCCCC------C-CCCEEEe
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS-------YRGVKHIGGNMFERI------P-KGDAILM 270 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~------p-~~D~v~~ 270 (369)
...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++.+|.++-+ . ..|+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5689999999999999999988654 6788887 666665543 257999999987621 1 2399988
Q ss_pred ccccccCChhHHHHHHHHHHH--hCCCCCEEEEEec
Q 017595 271 KWILHNWDDEHCLTLLKNCYE--AIPENGKIIIIDR 304 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~--~L~pgG~lli~e~ 304 (369)
---.. .....++|..+.+ .|+|+|.++ +|.
T Consensus 120 DPPY~---~~~~~~~l~~i~~~~~L~~~giIi-~E~ 151 (182)
T d2fhpa1 120 DPPYA---KQEIVSQLEKMLERQLLTNEAVIV-CET 151 (182)
T ss_dssp CCCGG---GCCHHHHHHHHHHTTCEEEEEEEE-EEE
T ss_pred chhhh---hhHHHHHHHHHHHCCCCCCCEEEE-EEc
Confidence 76532 2334567777765 589999665 443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.58 E-value=0.00016 Score=60.38 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=69.1
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHH---Hh-CCCC--CCceEEeCCCCCCCC-C-
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVI---QN-APSY--RGVKHIGGNMFERIP-K- 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~---~~-a~~~--~rv~~~~~d~~~~~p-~- 264 (369)
.+.++.+++- +....+|+|+|||.|.++..++.+.+..++.++++..-. .. .... +-+++...+-....+ .
T Consensus 54 Kl~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~ 132 (257)
T d2p41a1 54 KLRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 132 (257)
T ss_dssp HHHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCc
Confidence 3455666654 677789999999999999999988665555555541000 00 0111 224555554433333 2
Q ss_pred CCEEEeccccccCChh-----HHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 265 GDAILMKWILHNWDDE-----HCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 265 ~D~v~~~~vlh~~~d~-----~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
.|+|+|-..-+ -++. ...++|+-+.+.|+|||.+++ -.+.+.
T Consensus 133 ~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~Fvv-KVl~py 179 (257)
T d2p41a1 133 CDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCV-KVLNPY 179 (257)
T ss_dssp CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEE-EESCCC
T ss_pred CCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEE-EECCCC
Confidence 39999886533 2211 234788888999999998766 444443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=4.2e-05 Score=64.42 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=71.1
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh---CC---CCCCceEEeCCCCC-----CCCC-CCEEEe
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN---AP---SYRGVKHIGGNMFE-----RIPK-GDAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~---~~~rv~~~~~d~~~-----~~p~-~D~v~~ 270 (369)
+....+++|||+|.|.-+.-++-.+|+.+++.+|. ..-+.. +. ...++.++...+.+ +... .|+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34567999999999999999999999999999997 322222 11 23688888876654 1222 399999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+.+ .....+++-+...+++||++++.-.
T Consensus 148 RAv------a~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 148 RAV------ARLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp ECC------SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred hhh------hCHHHHHHHHhhhcccCCEEEEECC
Confidence 876 3345789999999999999987653
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.20 E-value=0.00076 Score=58.58 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=75.7
Q ss_pred CCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC---------CCCCceEEeCCCCCCCC----------CC
Q 017595 205 EQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP---------SYRGVKHIGGNMFERIP----------KG 265 (369)
Q Consensus 205 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~rv~~~~~d~~~~~p----------~~ 265 (369)
++...|+.+|||--.....+ ...++++++.+|.|.+++.-+ ...+..++..|+.++++ ..
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678889999988887776 446789999999998876322 12456888888876432 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEE
Q 017595 266 -DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIII 302 (369)
Q Consensus 266 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~ 302 (369)
-++++-.++++++.++..++|+.+.+...||+.|++-
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4778888999999999999999999999999987754
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00043 Score=59.45 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=54.1
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch--hHHHH-hCCC---CCCceEEeCCCCC-CCCCC
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL--PHVIQ-NAPS---YRGVKHIGGNMFE-RIPKG 265 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~-~a~~---~~rv~~~~~d~~~-~~p~~ 265 (369)
.++.+++... .....+|||||+|.|.++..|+++...+.++-.|. ...++ .... .++++++.+|+++ ++|..
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~ 87 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 87 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhh
Confidence 3456666665 66778999999999999999999987666666664 22222 2222 2689999999998 66655
Q ss_pred CEEE
Q 017595 266 DAIL 269 (369)
Q Consensus 266 D~v~ 269 (369)
+.|+
T Consensus 88 ~~vV 91 (278)
T d1zq9a1 88 DTCV 91 (278)
T ss_dssp SEEE
T ss_pred hhhh
Confidence 5544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00033 Score=59.39 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=58.9
Q ss_pred hHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCC----CCCCceEEeCCCCC-CCCC---
Q 017595 193 VMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAP----SYRGVKHIGGNMFE-RIPK--- 264 (369)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~rv~~~~~d~~~-~~p~--- 264 (369)
.++.+++... ..+...|||||||.|.++..|+++...+.++..| +..++..+ ..++++++.+|+.+ +++.
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD-RDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC-HHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEec-cchhHHHHHHhhhccchhHHhhhhhhhccccccc
Confidence 3456666665 6678899999999999999999987665555555 44444332 23789999999987 4432
Q ss_pred ---CCEEEeccccccCCh
Q 017595 265 ---GDAILMKWILHNWDD 279 (369)
Q Consensus 265 ---~D~v~~~~vlh~~~d 279 (369)
.-+.+..+.=++.+.
T Consensus 87 ~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 87 KMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHTSCEEEEEECCTTTHH
T ss_pred ccCCCeEEEecchHHHHH
Confidence 135566666666643
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.82 E-value=0.00024 Score=51.14 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
.-.++.|+..|... ++.|+.+||+.+++ .+..+.+.|+.|...|+|+....+.+.....|++|+.+...+
T Consensus 15 ~p~r~~IL~~L~~~---~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~ 84 (100)
T d1ub9a_ 15 NPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA 84 (100)
T ss_dssp SHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred CHHHHHHHHHhccC---CCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence 34578889999765 48999999999999 999999999999999999864322111123599998886544
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.0053 Score=53.80 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=82.7
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcchhHHHHhCCC---------------------------CCCceEEeCCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDLPHVIQNAPS---------------------------YRGVKHIGGNM 258 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~rv~~~~~d~ 258 (369)
+...|+-+|||.-.....+...+|+++++.+|.|.+++.-.+ .++..++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 457899999999999999998999999999999888763210 15789999999
Q ss_pred CC-CC---------C-CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Q 017595 259 FE-RI---------P-KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMVT 309 (369)
Q Consensus 259 ~~-~~---------p-~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~~ 309 (369)
.+ .+ . .. -++++--||.+++.+++.++|+.+.+..+ +|.+++.|++.+..
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~ 237 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQ 237 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCS
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCC
Confidence 86 21 1 11 47889999999999999999999998875 57788999986543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.63 E-value=0.0016 Score=59.57 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=71.4
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCC-------------CeEEEcch-hHHHHhCC--------CCCCceE
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPH-------------IEGVNFDL-PHVIQNAP--------SYRGVKH 253 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-------------~~~~~~D~-~~~~~~a~--------~~~rv~~ 253 (369)
-+++.+. .....+|+|-+||+|.++.++.++..+ ....++|. +.....++ ......+
T Consensus 153 ~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i 231 (425)
T d2okca1 153 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI 231 (425)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred hhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccccee
Confidence 3344443 445689999999999999988776321 23667776 54444332 2245678
Q ss_pred EeCCCCCCCCC--CCEEEeccccccCC---------------hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 254 IGGNMFERIPK--GDAILMKWILHNWD---------------DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 254 ~~~d~~~~~p~--~D~v~~~~vlh~~~---------------d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..+|.+...+. .|+|++.--+..-. ...-..+++.+.+.|+|||++.++-+
T Consensus 232 ~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 232 VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp EECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 88888874333 39999886663211 01124599999999999999887754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.62 E-value=0.041 Score=48.36 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=89.3
Q ss_pred CcceEEEEcCChhHHHH--------HHHHh--------CCCCeEEEcchhH-----HHHhCCC---C-CC--ceEEeCCC
Q 017595 206 QIKQLVDVGGGLGVTLN--------IITSR--------YPHIEGVNFDLPH-----VIQNAPS---Y-RG--VKHIGGNM 258 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~--------~l~~~--------~p~~~~~~~D~~~-----~~~~a~~---~-~r--v~~~~~d~ 258 (369)
+.-+|.|+||.+|..+. .+.+. -|...++.-|+|. +...... . +. +..++|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44789999999997752 22221 3556677777752 1111111 1 12 46678999
Q ss_pred CC-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 259 FE-RIPKG--DAILMKWILHNWDD-------------------------------EHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 259 ~~-~~p~~--D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+. =+|.. ++++++..||.++. .+...+|+.=++=|+|||++++.-.
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 99 47876 99999999997642 1334577777888999999999887
Q ss_pred cCCCCCcchH------HHhhhhhhhHHHHHhhcC---------CccCCHHHHHHHHHHcC-CcceeE
Q 017595 305 MPMVTPEATA------AAREASMTDIIMLMQFSG---------GRERTTQEFMALANEAG-FNGVNY 355 (369)
Q Consensus 305 ~~~~~~~~~~------~~~~~~~~d~~~~~~~~~---------~~~~t~~e~~~ll~~aG-f~~~~~ 355 (369)
..++...... ..-...+.++........ -..+|.+|+++.+++.| |.+.+.
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 7654321110 000011112111100000 12369999999998876 554444
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.60 E-value=0.00049 Score=49.25 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=50.0
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
.+|.--.++.|+..|.. ++.++.+||+.+|+ .+..+++.|+.|...|+|.....+ ...+|++++
T Consensus 18 kaL~~p~Rl~Il~~L~~----~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r~G---~~~~Y~l~~ 81 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQG---RHVYYQLQD 81 (98)
T ss_dssp HHHCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEC---CEEEEEECh
Confidence 44555677888888876 58999999999999 999999999999999999864211 123566653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.54 E-value=0.00096 Score=53.63 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=62.3
Q ss_pred cceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC--------CCCceEEeCCCCC----CCC--CCCEEEec
Q 017595 207 IKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS--------YRGVKHIGGNMFE----RIP--KGDAILMK 271 (369)
Q Consensus 207 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~----~~p--~~D~v~~~ 271 (369)
..+|||+-||+|.++.+.+.+... +++.+|. +.+++..++ .....+...|.++ ... ..|+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 469999999999999999988754 7888887 555543322 2346667776543 111 23999887
Q ss_pred cccccCChhHHHHHHHHHHH--hCCCCCEEEEE
Q 017595 272 WILHNWDDEHCLTLLKNCYE--AIPENGKIIII 302 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~--~L~pgG~lli~ 302 (369)
--... ....++|+.+.. .|+++|.+++-
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 66332 345567777765 68999866653
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.51 E-value=0.0006 Score=48.36 Aligned_cols=64 Identities=16% Similarity=0.307 Sum_probs=50.4
Q ss_pred HHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 42 ASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 42 ~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
.+|.--.++.|+..|.. ++.++.+|++.+|+ .+..+++.|+.|...|+|....+. ..-+|+++.
T Consensus 13 kaL~d~~Rl~Il~~L~~----~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r~G---~~~~Y~l~~ 76 (94)
T d1r1ua_ 13 KALGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQG---QSMIYSLDD 76 (94)
T ss_dssp HHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEEEC---CEEEEEECc
Confidence 34445578888999987 58999999999999 999999999999999999865211 123577763
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.40 E-value=0.0011 Score=48.23 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 41 PASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 41 ~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
..+|.--.++.|+..|... ++.++.+|++.+|+ .+..+++.|+.|...|+|.....+ ..-+|++++
T Consensus 25 ~kaLadp~Rl~Il~~L~~~---~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r~G---~~~~Y~l~~ 90 (108)
T d1u2wa1 25 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEG---KLALYSLGD 90 (108)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-------CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHhC---CCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEEEC---CEEEEEECH
Confidence 4556666788999998654 48999999999999 999999999999999999874211 123577664
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0047 Score=39.91 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=44.1
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
.++.|+..|.+. ..+|.++||+.+|+ ...-+.+-+..|...|+..... .+..|++.
T Consensus 6 ~~~~iL~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~~-----~g~GY~L~ 61 (63)
T d1biaa1 6 VPLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV-----PGKGYSLP 61 (63)
T ss_dssp HHHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE-----TTTEEECS
T ss_pred HHHHHHHHHHHC---CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEEe-----CCCeEEeC
Confidence 456788888774 48999999999999 9999999999999999844321 23357765
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.65 E-value=0.0037 Score=50.53 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=50.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccC--CCCCCcceecChhch
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLYSLAPVAK 119 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y~~t~~~~ 119 (369)
-.++.|++.|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|...... .|....+|.++..+.
T Consensus 15 ~~R~~Il~~L~~----~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 15 ETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 356677888876 49999999999999 999999999999999999764221 122234788887754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.013 Score=51.96 Aligned_cols=98 Identities=13% Similarity=0.216 Sum_probs=64.3
Q ss_pred HHHHHhccCcCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCCCCC----
Q 017595 195 NRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFERIP---- 263 (369)
Q Consensus 195 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---- 263 (369)
+.+++.++ ..+..+|||+-||+|.++..|+++.. +++++|. +..++.|+. ..+++|+.+|..+.++
T Consensus 202 ~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 202 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-cCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 34444444 55678999999999999999998764 5677776 666665543 3789999999877332
Q ss_pred --CC-CEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEE
Q 017595 264 --KG-DAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIII 301 (369)
Q Consensus 264 --~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli 301 (369)
.. |+|++---=-- +.++++.+.+. +|.-.++|
T Consensus 279 ~~~~~d~vilDPPR~G-----~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 279 AKNGFDKVLLDPARAG-----AAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp GTTCCSEEEECCCTTC-----CHHHHHHHHHH-CCSEEEEE
T ss_pred hhccCceEEeCCCCcc-----HHHHHHHHHHc-CCCEEEEE
Confidence 12 88876543222 23456666554 66555554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.27 E-value=0.043 Score=42.62 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred eEEEEcCCh--hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-CCCCCCEEEeccccccCChhHHHH
Q 017595 209 QLVDVGGGL--GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-RIPKGDAILMKWILHNWDDEHCLT 284 (369)
Q Consensus 209 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~ 284 (369)
+|+=||||. |.++..|.+..++.+++++|. +..++.+.+...+.....+... .....|+|+++- |.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 577899994 346777888888889999999 7777777655444433333332 122348888664 4466788
Q ss_pred HHHHHHHhCCCCCEEEE
Q 017595 285 LLKNCYEAIPENGKIII 301 (369)
Q Consensus 285 ~L~~~~~~L~pgG~lli 301 (369)
+++++.+.++++..++-
T Consensus 78 vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred hhhhhhccccccccccc
Confidence 99999999999865443
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.15 E-value=0.011 Score=38.26 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=46.2
Q ss_pred HHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcc-ccccccCCCCCCcceecCh
Q 017595 44 MQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRV-LRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 44 l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~y~~t~ 116 (369)
++.--...|++.|.... +++|+.+||+.+++ ..+-+.|-|..|...|+ +.. ..+.|.+.+
T Consensus 4 ~k~eR~~~Il~~L~~~~--~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~-------~~gGY~L~~ 64 (65)
T d1j5ya1 4 VRQERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA-------TPRGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE-------ETTEEECCT
T ss_pred hHHHHHHHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEE-------eCCCEEeCC
Confidence 34444567888887642 47999999999999 99999999999999997 443 235677653
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.14 E-value=0.011 Score=44.95 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=52.5
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|...+ |++|+.+||+.+++ ++..+.++++-|+..|+|.....+.....-.+.+|+.+..+..
T Consensus 34 ~~q~~vL~~L~~~~--g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~ 104 (145)
T d2hr3a1 34 FSQLVVLGAIDRLG--GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 104 (145)
T ss_dssp HHHHHHHHHHHHTT--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHH
Confidence 34667777776542 58999999999999 9999999999999999998753221112246888888886654
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.11 E-value=0.0089 Score=39.56 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=40.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..|+..|... +++|..|||+.+|+ .+.-+.++++.|...|+|.+.
T Consensus 8 ~~~Il~~l~~~---g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 8 AGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34578888776 59999999999999 999999999999999999853
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=95.00 E-value=0.018 Score=37.14 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=38.2
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|.+.+.++| -.|-++.|||+.+|+ ++..++.+|+.|+..|.+.+.
T Consensus 11 ~I~~~~~~~g-~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI 56 (64)
T d1lvaa3 11 DLEDKYRVSR-WQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI 56 (64)
T ss_dssp HHHHHHHHHT-TSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHcC-CCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3445555543 148999999999999 999999999999999999886
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.99 E-value=0.007 Score=48.55 Aligned_cols=71 Identities=7% Similarity=0.131 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccC--CCCCCcceecChh
Q 017595 40 LPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSS--AGDNQRLYSLAPV 117 (369)
Q Consensus 40 ~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~y~~t~~ 117 (369)
...+|..-.+..|++.|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|...... .|.....|.+|..
T Consensus 12 ~~~~l~~p~R~~Il~~L~~----~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~ 83 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTAD 83 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSS
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEccc
Confidence 3456666678889999975 59999999999999 999999999999999999653211 0111235887765
Q ss_pred c
Q 017595 118 A 118 (369)
Q Consensus 118 ~ 118 (369)
+
T Consensus 84 ~ 84 (190)
T d1ulya_ 84 V 84 (190)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.95 E-value=0.027 Score=45.21 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=66.1
Q ss_pred cCCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCC---------CCC-CEEEec
Q 017595 204 FEQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERI---------PKG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~---------p~~-D~v~~~ 271 (369)
.+...+||-+|||. |.++..+++.....++++.|. +.-++.+++..- ..+.-....++ +.+ |+++-.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-~~~~~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-cEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 66778999999997 667788888877778999998 777777665532 22211111111 223 777643
Q ss_pred ccc------c-cCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 272 WIL------H-NWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 272 ~vl------h-~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
--. | ..........|+.+.++++|||++.++-...++
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~ 145 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE 145 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence 210 1 111111246899999999999999998764443
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=94.91 E-value=0.012 Score=44.56 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=54.4
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++-++..|... ++.|+.+||+.+++ ++..+.+.++.|...|+|.+...+.....-...+|+.+..++.
T Consensus 32 ~~q~~iL~~l~~~---~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d2etha1 32 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 101 (140)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHH
Confidence 3466788888776 48999999999999 9999999999999999998754321112246888888876554
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=94.83 E-value=0.0086 Score=38.46 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=39.2
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|+..|.+ +|+|..|||+.+|+ ...-+.++++.|...|++.+.
T Consensus 3 ~Il~~i~~----~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMK----SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHH----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 57888887 48999999999999 999999999999999999864
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=94.80 E-value=0.02 Score=42.96 Aligned_cols=70 Identities=7% Similarity=0.128 Sum_probs=53.3
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|... ++.|..+||+.+++ ++..+.++++-|+..|++.....+.......+.+|+.+..+..
T Consensus 34 ~~q~~vL~~i~~~---~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~ 103 (136)
T d2bv6a1 34 YPQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 103 (136)
T ss_dssp HHHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHH
Confidence 3456777888775 48999999999999 9999999999999999998754321111235788888876543
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=94.78 E-value=0.012 Score=44.22 Aligned_cols=72 Identities=8% Similarity=0.193 Sum_probs=53.6
Q ss_pred HHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 47 AAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 47 a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
..++.++..|...+ +++.|..+||+.+++ +...+.+.++.|+..|++.....+.......+.+|+.+..+..
T Consensus 29 ~~q~~vL~~l~~~~-~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~ 100 (135)
T d3broa1 29 GTQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 100 (135)
T ss_dssp HHHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHHHcC-CCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHH
Confidence 44566777777642 257999999999999 9999999999999999997653221112346888888776554
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.58 E-value=0.013 Score=40.58 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+.+...|....++ +...+..+|+.|...|++... ++.|.+|+.+..|+.
T Consensus 18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~-------~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE-------GKQYMLTKKGEELLE 66 (90)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------TTEEEECHHHHHHHH
T ss_pred CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec-------CCEEEECccHHHHHH
Confidence 4578999999999 999999999999999999863 589999999998775
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.55 E-value=0.0069 Score=43.84 Aligned_cols=47 Identities=9% Similarity=0.193 Sum_probs=38.7
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.|+..|...+ ||+|+.+||+.+++ ++..+.+.|+-|...|+|...
T Consensus 23 ~~~iL~~L~~~~--~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 23 DVAVLLKMVEIE--KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence 344565554322 58999999999999 999999999999999999864
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.54 E-value=0.014 Score=44.17 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=52.6
Q ss_pred HHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 46 AAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 46 ~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
+..++.++..|... ++.|+.+||+.+++ ++..+.+.++.|+..|+|.+...+.......+.+|+.+..+..
T Consensus 35 t~~q~~vL~~l~~~---~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~ 105 (141)
T d1lnwa_ 35 TPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQ 105 (141)
T ss_dssp CHHHHHHHHHHHSS---TTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHC---CCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHH
Confidence 34466677777765 37999999999999 9999999999999999998754321112235778877765543
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.49 E-value=0.0085 Score=43.36 Aligned_cols=46 Identities=11% Similarity=0.349 Sum_probs=39.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..++..|... |+.|+.+||+.+|+ +...+.+.|+-|...|+|.+.
T Consensus 22 e~~v~~~L~~~---g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 22 DVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 44566677665 48999999999999 999999999999999999763
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=94.49 E-value=0.021 Score=42.40 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=42.4
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++-.|+.. ++.|.++||+.+++ ++..++++|+.|...|+|.... | .+|.| ++....
T Consensus 9 ~L~~la~~---~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~r---G-~~GGy-Lar~p~ 64 (127)
T d1xd7a_ 9 ILSLISMD---EKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRA---G-VPGAS-LKKDPA 64 (127)
T ss_dssp HHHHHHTC---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS---S-SSSCE-ESSCGG
T ss_pred HHHHHhcC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccC---C-CCCcc-ccCCHH
Confidence 34555554 48999999999999 9999999999999999998642 2 23446 664433
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.41 E-value=0.019 Score=49.98 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=39.3
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHh---CCCCCCceEEeCCCCC
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQN---APSYRGVKHIGGNMFE 260 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~~rv~~~~~d~~~ 260 (369)
...+|||||+|.|.++..|++...--++++++. +...+. ....++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 457899999999999999998742225666665 333332 2234789999999874
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.33 E-value=0.016 Score=38.09 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=40.4
Q ss_pred hChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 50 LGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 50 lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
..|+..|... ++.|-.+||+.+|+ ...-+.++++.|...|+|.+.
T Consensus 8 ~~Il~~i~~~---g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 8 GAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3578888886 59999999999999 999999999999999999863
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=94.31 E-value=0.058 Score=40.62 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=52.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... +|.|+.+||+.+++ ++..+.+.++-|+..|+|.....+.....-.+.+|+.+..++.
T Consensus 36 ~q~~iL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~ 104 (143)
T d1s3ja_ 36 AQLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 104 (143)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHH
Confidence 445577778775 48999999999999 9999999999999999998653321111235888888876654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.012 Score=54.96 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=64.7
Q ss_pred HHHHhccCcCCcceEEEEcCChhHHHHHHHHhC----CC--------------CeEEEcch-hHHHHhCCC--------C
Q 017595 196 RILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY----PH--------------IEGVNFDL-PHVIQNAPS--------Y 248 (369)
Q Consensus 196 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~--------~ 248 (369)
-+.+.+. .....+|+|-.||+|.++....+.. .. ....++|. +.....+.- .
T Consensus 155 ~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~ 233 (524)
T d2ar0a1 155 TIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 233 (524)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc
Confidence 3334343 3455799999999999998866542 11 14577776 544443321 1
Q ss_pred ---CCceEEeCCCCC-C---CCCCCEEEeccccccCC------------hhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 249 ---RGVKHIGGNMFE-R---IPKGDAILMKWILHNWD------------DEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 249 ---~rv~~~~~d~~~-~---~p~~D~v~~~~vlh~~~------------d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
..-.+..++.+. + .+..|+|+.+--+-.-. ...-..+++.+.+.|+|||++.++-+
T Consensus 234 ~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 234 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 123455566654 2 12248888775442110 01123589999999999999888754
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.86 E-value=0.044 Score=47.42 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=65.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCC-CCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C-CCC-CCEEEec-
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYP-HIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R-IPK-GDAILMK- 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~-~p~-~D~v~~~- 271 (369)
.....+|||+.+|.|.=+..++.... +..++..|. +.-+...+. ..++.+...|... + ... .|.|++-
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 44568999999999999888888755 557888887 554443322 2567777777654 2 222 2766541
Q ss_pred -----ccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 272 -----WIL-------HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 272 -----~vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.++ ..+..++ -.++|+++.+.|||||+|+-..-..
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 111 1222222 3478899999999999877555443
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=93.86 E-value=0.02 Score=41.78 Aligned_cols=70 Identities=9% Similarity=0.103 Sum_probs=51.0
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|...+ ++++|+.+||+.+++ ++..+.+.++.|...|++.+...+.....-...+|+.++.++.
T Consensus 35 q~~vL~~l~~~~-~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 104 (115)
T d2frha1 35 EFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 104 (115)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHH
Confidence 444555665532 357899999999999 9999999999999999998864331112245778888876553
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=93.81 E-value=0.012 Score=40.46 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=43.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
+++|+.+||+.+++ .+..+.++|+-|...|++.... + + ..-.|.+|+.+..++
T Consensus 20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~-D-~-R~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV-T-K-RGQILNITEKGLDVL 72 (85)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-E-T-TEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeec-c-c-ccccceECHHHHHHH
Confidence 48999999999999 9999999999999999998742 1 1 223578888777554
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=93.66 E-value=0.012 Score=44.52 Aligned_cols=69 Identities=7% Similarity=0.109 Sum_probs=52.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++-++..|... ++.|+.+||+.+++ +...+.+.++-|+..|++.....+.......+.+|+.+..++.
T Consensus 31 ~q~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 31 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence 355566677665 48999999999999 9999999999999999998753221111246888888887664
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.62 E-value=0.042 Score=38.42 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=44.3
Q ss_pred CCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 63 AKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 63 ~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
|+....||.+.+ |+ .+..|.+=|+.|+..|+|.+...+.....-.|++|+.+..+..
T Consensus 23 g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~p 80 (95)
T d2hzta1 23 GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 80 (95)
T ss_dssp CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHHH
Confidence 589999999997 89 9999999999999999998642221111234999998887663
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.61 E-value=0.027 Score=42.18 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=49.1
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|...+ ++.|+.+||+.+++ ++..+.++++.|+..|+|.....+.....-...+|+.+..++.
T Consensus 30 q~~iL~~l~~~~--~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~ 98 (137)
T d2fbha1 30 RWLVLLHLARHR--DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 98 (137)
T ss_dssp HHHHHHHHHHCS--SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHH
Confidence 334455565432 36899999999999 9999999999999999998753221111235777877776553
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.026 Score=42.47 Aligned_cols=69 Identities=17% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.....+.......+.+|+.+..+..
T Consensus 35 ~q~~vL~~l~~~---~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 103 (138)
T d1jgsa_ 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhHHhC---cCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHH
Confidence 456667777665 38999999999999 9999999999999999998643221112236888888886653
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=93.40 E-value=0.034 Score=41.05 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++-++..|...+ ++++|+.+||+.+++ .+..+.+.++.|...|+|.+...+.....-...+|+.++..+.
T Consensus 35 ~q~~iL~~l~~~~-~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~ 105 (125)
T d1p4xa1 35 KEFILLTYLFHQQ-ENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA 105 (125)
T ss_dssp HHHHHHHHHHSCS-CSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHH
Confidence 4556677775532 358999999999999 9999999999999999998764321112235777877775553
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.29 E-value=0.023 Score=44.57 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=49.7
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++-.|...+++.++|..+||+.+++ ++..+.++++-|+..|+|.....+.....-...+|+.+..++.
T Consensus 64 q~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~ 134 (172)
T d2fbka1 64 GWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 134 (172)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHH
Confidence 4455666655443346899999999999 9999999999999999998753221111234677877776654
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=93.23 E-value=0.026 Score=42.42 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=52.2
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.....+.....-...+|+.+..+..
T Consensus 35 q~~vL~~l~~~---~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 102 (137)
T d1z91a1 35 QYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 102 (137)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence 44556677664 48999999999999 9999999999999999998754321112245789998887665
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=93.06 E-value=0.024 Score=42.72 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChh
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPV 117 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~ 117 (369)
.+.|+++||+.+++ ++..++++|..|...|+|.... +.|.|.+...
T Consensus 22 ~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r-----G~GG~~L~~~ 67 (138)
T d1ylfa1 22 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-----GPGGAGLLKD 67 (138)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec-----CCCCceecCC
Confidence 48999999999999 9999999999999999998642 3366777643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.085 Score=44.83 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=65.2
Q ss_pred cCCcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC-C--CCC-CCEEEe--
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE-R--IPK-GDAILM-- 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~-~D~v~~-- 270 (369)
.....+|||+.+|.|.=+..+++...+.+++..|. +.-+...+. .+.+.....|... . .+. .|.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 45678999999999999999999888888888886 433322211 2344555444443 1 222 277653
Q ss_pred ----cccc-------ccCChhH-------HHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 271 ----KWIL-------HNWDDEH-------CLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 271 ----~~vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
..++ ..++..+ -.++|.++.+.|||||+|+-..-..
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 2222 2233222 3478999999999999877555443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.85 E-value=0.14 Score=40.05 Aligned_cols=97 Identities=19% Similarity=0.093 Sum_probs=61.0
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeC---CCCC--------CCCCC-CEEE
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGG---NMFE--------RIPKG-DAIL 269 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~--------~~p~~-D~v~ 269 (369)
.+...+||-+|+| .|.++..+++...--++++.|. +.-.+.+++..--.++.. |+.+ .-+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5567899999988 5888889998864347888887 666666654422122221 1100 01223 8776
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccCCC
Q 017595 270 MKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMPMV 308 (369)
Q Consensus 270 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~~~ 308 (369)
-.- ..+ ..++.+.+.|+|||+++++-...+.
T Consensus 106 d~v-----G~~---~~~~~a~~~l~~~G~iv~~G~~~~~ 136 (182)
T d1vj0a2 106 EAT-----GDS---RALLEGSELLRRGGFYSVAGVAVPQ 136 (182)
T ss_dssp ECS-----SCT---THHHHHHHHEEEEEEEEECCCCSCC
T ss_pred ecC-----Cch---hHHHHHHHHhcCCCEEEEEeecCCC
Confidence 332 111 3578888999999999988755443
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.077 Score=34.43 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=45.7
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecCh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAP 116 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~ 116 (369)
...||..|...+...++++.+|++++ ++ +..-+...++.|...|++-.. .+++.|+.|.
T Consensus 8 q~~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT-----iDddHfkstd 67 (69)
T d1dpua_ 8 QNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST-----VDDDHFKSTD 67 (69)
T ss_dssp HHHHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC-----SSTTEEEESS
T ss_pred HHHHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc-----cccchhcccC
Confidence 34567777664434589999999998 79 999999999999999998642 2567887663
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.66 E-value=0.039 Score=42.01 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=39.6
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..|+-.|..++ +|+|+.+||+.+|+ +...+.+.|+.|...|+|...
T Consensus 28 ~~~i~~~L~~~~--~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~ 74 (151)
T d1ku9a_ 28 VGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (151)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEE
Confidence 345666675543 58999999999999 999999999999999999865
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=92.66 E-value=0.046 Score=39.65 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++.++..|.... +++.|+.+||+.+++ ++..+.++++-|+..|++.+...+.....-...+|+.+..++
T Consensus 34 q~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 34 EIYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 102 (115)
T ss_dssp HHHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHccC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence 445666665321 248999999999999 999999999999999999875432111223577777776554
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.60 E-value=0.036 Score=35.11 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|+..|..+ +..|+.+||+++|+ ++..+.+-++.|...|++..
T Consensus 4 ~D~kIl~~L~~n---~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 4 RDKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 356788889885 58999999999999 99999999999999999974
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.54 E-value=0.04 Score=34.84 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=41.6
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
++..|...|..+ +..|+.+||+++|+ .+..+.+-++.|...|++..
T Consensus 4 ~D~~Il~~L~~n---~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 4 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 567788999886 48999999999999 99999999999999999974
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=92.45 E-value=0.04 Score=41.74 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=49.8
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|... ++.|..+||+.+++ ++..+.+.++-|+..|++.....+.....-...+|+.+..++.
T Consensus 31 q~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~ 98 (144)
T d1lj9a_ 31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHH
Confidence 34455566665 37999999999999 9999999999999999998753321111235777877776554
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=92.21 E-value=0.038 Score=41.50 Aligned_cols=70 Identities=14% Similarity=0.098 Sum_probs=49.9
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++-.|...+ ++.|..+||+.+++ +...+.+.++.|...|+|.....+.......+.+|+.+..++.
T Consensus 32 ~~~~~L~~l~~~~--~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 32 THWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcC--CCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence 3445666676532 36999999999999 9999999999999999998643221111236888888876664
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=92.20 E-value=0.056 Score=34.54 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=41.4
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
.+..|++.|..+ +..|..+||+.+|+ .+.-+.+-++-|...|++..
T Consensus 6 ~D~~IL~~L~~n---~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 466788999886 58999999999999 99999999999999999974
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.12 E-value=0.026 Score=42.32 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|... ++.|+.+||+.+++ ++..+.++++-|+..|++.....+.....-...+|+.+..+..
T Consensus 31 ~q~~vL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 31 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHH
Confidence 355567777765 48999999999999 9999999999999999998753221001134778887776554
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=92.07 E-value=0.053 Score=38.42 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCC
Q 017595 27 TYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSA 105 (369)
Q Consensus 27 ~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 105 (369)
.....++++.+-|...++.. |.. |+....||.+.+ |+ .+..|.+-|+.|+..|+|.+...+.
T Consensus 9 pv~~~l~ilg~kW~l~Il~~---------L~~----g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~ 71 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQ---------INR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE 71 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHH---------HTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hcc----CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCC
Confidence 46677778888887765543 333 489999999997 89 9999999999999999998742221
Q ss_pred CCCCcceecChhchhhhc
Q 017595 106 GDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 106 ~~~~~~y~~t~~~~~~~~ 123 (369)
....-.|.+|+.+..+..
T Consensus 72 ~p~~veY~LT~~G~~L~p 89 (102)
T d2fswa1 72 VPPRVEYSLTPLGEKVLP 89 (102)
T ss_dssp SSCEEEEEECHHHHTTHH
T ss_pred CCCeehhhhhHhHHHHHH
Confidence 111235999998886653
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=92.04 E-value=0.055 Score=39.90 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=51.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
.++.++..|...+ +++.|+.+||+.+++ +...+.+.++-|...|+|.+...+.....-...+|+.+..++.
T Consensus 34 ~q~~vL~~l~~~~-~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~~ 104 (125)
T d1p4xa2 34 VEFTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 104 (125)
T ss_dssp HHHHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHcc-CCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHHH
Confidence 3555677775432 247899999999999 9999999999999999998753321112235777877765553
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=91.97 E-value=0.047 Score=34.91 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccc
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRC 100 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 100 (369)
++..|+..|..+ +..|..+||+++|+ .+..+.+-++.|.+.|++..
T Consensus 6 ~D~~IL~~L~~~---~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 6 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 466788999886 58999999999999 99999999999999999974
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.86 E-value=0.072 Score=38.09 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccC
Q 017595 26 DTYSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSS 104 (369)
Q Consensus 26 ~~~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 104 (369)
-+.+..++++.+-|...+|. .|.. |+....||.+.+ |+ .+..|.+-|+.|...|+|.+...+
T Consensus 7 c~i~~al~iig~kW~~~Il~---------~L~~----g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~~ 69 (108)
T d1z7ua1 7 TSINLALSTINGKWKLSLMD---------ELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFN 69 (108)
T ss_dssp HHHHHHHHTTCSTTHHHHHH---------HHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred CcHHHHHHHHcCCCHHHHHH---------HHHc----CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeeccC
Confidence 45666777777777766554 3444 489999999997 79 999999999999999999864222
Q ss_pred CCCCCcceecChhchhhhc
Q 017595 105 AGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 105 ~~~~~~~y~~t~~~~~~~~ 123 (369)
.....-.|.+|+.+..+..
T Consensus 70 ~~p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 70 ELPPRVEYTLTPEGYALYD 88 (108)
T ss_dssp CSSCEEEEEECHHHHHHHH
T ss_pred CCcceehhhhchhHHHHHH
Confidence 1111234999999887664
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.12 Score=31.80 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=37.2
Q ss_pred hhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 52 VFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 52 lfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
|+..|.+-||+...|+.+||.++++ ...-+-|.|..|...|.+.+.
T Consensus 4 vl~~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~ 49 (59)
T d2gxba1 4 ILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE 49 (59)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhc
Confidence 3344444333468999999999999 899999999999999999874
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.68 E-value=0.045 Score=48.56 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=67.2
Q ss_pred CcceEEEEcCChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCC---------------------CCceEEeCCCCC---
Q 017595 206 QIKQLVDVGGGLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSY---------------------RGVKHIGGNMFE--- 260 (369)
Q Consensus 206 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~rv~~~~~d~~~--- 260 (369)
+..+|||..||+|..+.+.+...+..+++..|. +..++.+++. ..+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 357999999999999999888777668899998 7777655431 124555566543
Q ss_pred CCCC-CCEEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 261 RIPK-GDAILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 261 ~~p~-~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
.... .|+|.+-- +. .+..+|..+.++++.||.|.|.-+
T Consensus 125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEec
Confidence 1223 38887765 32 235789999999999998888755
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=91.63 E-value=0.052 Score=39.30 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhC-CCCCCCCcccHHHHHHHHhcCccccccccCCC
Q 017595 28 YSFAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQM-PSRNPNTGVMLDRILRLLVTNRVLRCSLSSAG 106 (369)
Q Consensus 28 ~~~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 106 (369)
....++++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+-|+.|+..|+|.+...+..
T Consensus 14 v~~~l~~ig~kW~l~Il~~---------L~~----g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~~~ 76 (114)
T d1yyva1 14 SREVLKHVTSRWGVLILVA---------LRD----GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYPVV 76 (114)
T ss_dssp HHHHHHHHHSHHHHHHHHH---------GGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred HHHHHHHHcCCCHHHHHHH---------Hhc----CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccCCC
Confidence 4566777778777765543 334 488999999998 78 99999999999999999987532211
Q ss_pred CCCcceecChhchhhhc
Q 017595 107 DNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 107 ~~~~~y~~t~~~~~~~~ 123 (369)
...-.|.+|+.+..+..
T Consensus 77 p~~veY~LT~~G~~L~~ 93 (114)
T d1yyva1 77 PPHVEYSLTPLGEQVSD 93 (114)
T ss_dssp SCEEEEEECHHHHHHHH
T ss_pred CchhHhHhhHhHHHHHH
Confidence 11245999999987764
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=91.39 E-value=0.078 Score=33.57 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.+..+||+.+|+ .+.-+...++-|...|++...
T Consensus 20 ~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~~ 54 (61)
T d2ev0a1 20 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE 54 (61)
T ss_dssp SSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred CCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence 48999999999999 999999999999999999863
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=91.32 E-value=0.048 Score=42.23 Aligned_cols=68 Identities=15% Similarity=-0.020 Sum_probs=50.8
Q ss_pred HhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhhc
Q 017595 49 ELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFVL 123 (369)
Q Consensus 49 ~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~~ 123 (369)
++.++..|... ++.|+.+||+.+++ +...+.++++-|...|++.....+.....-...+|+.+..++.
T Consensus 43 q~~vL~~l~~~---~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 110 (162)
T d2fxaa1 43 EHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 110 (162)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHhhhccC---CCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHH
Confidence 45567777665 48999999999999 9999999999999999998753321112246888888886653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.69 Score=35.35 Aligned_cols=95 Identities=9% Similarity=0.044 Sum_probs=61.0
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC----------CCCC-CEEEe
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER----------IPKG-DAILM 270 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~----------~p~~-D~v~~ 270 (369)
.+...+||=+|+| .|.++..+++...-.++++.|. +.-.+.+++..--.++..+-.++ .+.+ |+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 5566789999988 4566677777765457899998 77777666542222232221111 1223 87764
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 271 KWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 271 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
.-- . ...++.+.+.++|||++++.-...
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcCCCEEEEEecCC
Confidence 332 1 246888999999999999987543
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.06 E-value=0.11 Score=39.13 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=55.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCC
Q 017595 30 FAMQLAMSIVLPASMQAAAELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQ 109 (369)
Q Consensus 30 ~l~~~~~~~~~~~~l~~a~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~ 109 (369)
..++++..-|...+|+.+ .. |+....||.+.+|+ .+..|.+-|+.|...|+|.+...+ ....
T Consensus 12 ~~l~ilg~kW~l~Il~~l---------~~----G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~-~p~r 73 (142)
T d2f2ea1 12 RPLDVIGDGWSMLIVRDA---------FE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAE-SGSH 73 (142)
T ss_dssp TTHHHHCSSSHHHHHHHH---------HT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECS-SSSC
T ss_pred HHHHHHcCCCHHHHHHHH---------Hc----CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCC-CCCe
Confidence 345566666666655543 33 48999999999999 999999999999999999863211 1123
Q ss_pred cceecChhchhhhc
Q 017595 110 RLYSLAPVAKYFVL 123 (369)
Q Consensus 110 ~~y~~t~~~~~~~~ 123 (369)
..|++|+.+..|..
T Consensus 74 ~~Y~LT~~G~~L~p 87 (142)
T d2f2ea1 74 QEYRLTDKGRALFP 87 (142)
T ss_dssp EEEEECHHHHTTHH
T ss_pred eEEecCcCcchHHH
Confidence 46999998887653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.38 E-value=1.1 Score=33.94 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=60.2
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC-C-----------CCCC-CEE
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE-R-----------IPKG-DAI 268 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~-----------~p~~-D~v 268 (369)
.+...+||-+||| .|.++..+++.. +.+++++|. +.-.+.+++..--..+..+-.. + .+.+ |++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5566788889988 677788888765 579999998 6666666554222222222211 1 1223 777
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 269 LMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 269 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+-.-- . ...++.+.+.++|+|++++.-..
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCC-----C---hHHHHHHHHHHhcCCceEEEecC
Confidence 64321 1 25678888999999999988754
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.79 E-value=0.2 Score=31.78 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++.+..+||+.+|+ .+.-+.+.++-|...|++...
T Consensus 22 ~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~~ 56 (63)
T d2isya1 22 VTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA 56 (63)
T ss_dssp CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence 58999999999999 999999999999999999874
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.73 E-value=1.2 Score=34.23 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=61.8
Q ss_pred cCCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC---------CCCC-CEEEec
Q 017595 204 FEQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER---------IPKG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~---------~p~~-D~v~~~ 271 (369)
.+...+||=+|||. |.++..+++...-.+++..|. +.-.+.+++..--.++...-.+. .+.+ |+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 56678899999986 889999999886667888888 65566665543333332111111 1223 877643
Q ss_pred cccccCChhHHHHHHHHHHHhCCCC-CEEEEEecc
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPEN-GKIIIIDRM 305 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pg-G~lli~e~~ 305 (369)
-- . ...+....+.++|| |+++++-..
T Consensus 106 ~G-----~---~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 106 AG-----T---AQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred cc-----c---chHHHHHHHHhhcCCeEEEecCCC
Confidence 21 1 25688999999996 999987653
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.21 Score=32.48 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 63 AKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 63 ~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
-|.|+.|||+.+|++ .+..+.+.|..|...|++...
T Consensus 23 ~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~ 58 (71)
T d1jhfa1 23 MPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV 58 (71)
T ss_dssp SCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence 488999999999992 466799999999999999974
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.47 E-value=0.42 Score=40.48 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=41.9
Q ss_pred cCCcceEEEEcCChhHHHHHHHHh-CCCCeEEEcch-hHHHHhCCC------CCCceEEeCCCCC
Q 017595 204 FEQIKQLVDVGGGLGVTLNIITSR-YPHIEGVNFDL-PHVIQNAPS------YRGVKHIGGNMFE 260 (369)
Q Consensus 204 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 260 (369)
.....+|||+.+|.|.=+..++.. .++.+++.+|. +.-++..++ ..++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 345678999999999988888876 44567888887 544443322 3678888888765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.63 Score=35.50 Aligned_cols=92 Identities=16% Similarity=0.098 Sum_probs=55.0
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC---CCCCC-CEEEeccccccC
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE---RIPKG-DAILMKWILHNW 277 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~-D~v~~~~vlh~~ 277 (369)
.+...+||=+|+| .|.++..+++.. +.+.++.|. ++-.+.+++...-.++...-.. ....+ |+++-.---
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~--- 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA--- 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS---
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec---
Confidence 5667788889987 678888888886 567667775 4444444432222222221111 11123 876644221
Q ss_pred ChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 278 DDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 278 ~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+ ..++...+.++|+|+++++-.
T Consensus 104 --~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 --P---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp --C---CCHHHHHTTEEEEEEEEECCC
T ss_pred --c---hhHHHHHHHHhcCCEEEEecc
Confidence 1 236677889999999998754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.23 E-value=1.2 Score=33.58 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=54.3
Q ss_pred eEEEEcCCh--hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCCCCCCEEEeccccccCChhHHHHH
Q 017595 209 QLVDVGGGL--GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERIPKGDAILMKWILHNWDDEHCLTL 285 (369)
Q Consensus 209 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~ 285 (369)
+|.=||+|. +.++..|.+. +.+++++|. +...+.+.+...+.... +..+.....|+|+++- |+....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIilav-----p~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLCT-----PIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEECS-----CHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceee-eecccccccccccccC-----cHhhhhhh
Confidence 566788883 3455666555 457888888 66666655443332222 2223344569988643 56778899
Q ss_pred HHHHHHhCCCCCEEEE
Q 017595 286 LKNCYEAIPENGKIII 301 (369)
Q Consensus 286 L~~~~~~L~pgG~lli 301 (369)
++++...++|+..++-
T Consensus 74 l~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHGGGSCTTCEEEE
T ss_pred hhhhhhhcccccceee
Confidence 9999999999875543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.77 E-value=0.69 Score=35.54 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=61.3
Q ss_pred HHHhccCcCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCC---C----CCCC-C
Q 017595 197 ILDSYNGFEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFE---R----IPKG-D 266 (369)
Q Consensus 197 ~~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~----~p~~-D 266 (369)
+.+..+ .+...+||=+||| .|.++..+++.....++++.|. +.-.+.+++..-.+++..+-.+ . .+.+ |
T Consensus 20 ~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 20 CINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp HHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred HHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 344344 5667888889987 4567777887776667777776 6666666544333343322111 0 1223 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
+|+-.- .. ...++.+.+.++|+|+++++-.
T Consensus 99 ~vid~~-----G~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 99 FALEST-----GS---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEEECS-----CC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEEcC-----Cc---HHHHHHHHhcccCceEEEEEee
Confidence 765332 11 2567888999999999998754
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.25 E-value=0.61 Score=40.75 Aligned_cols=59 Identities=10% Similarity=0.158 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHhhhhHhHHHHHHhccCcCCcceEEEEcCChhHHHHHHHHhC-------CCCeEEEcchh
Q 017595 176 SRFNGVFNKAMLNHTSIVMNRILDSYNGFEQIKQLVDVGGGLGVTLNIITSRY-------PHIEGVNFDLP 239 (369)
Q Consensus 176 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~ 239 (369)
|+....|...++.+ ...+...+. .++..+|||+|+|+|.++..+++.. ..+++..++..
T Consensus 54 p~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s 119 (365)
T d1zkda1 54 PEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 119 (365)
T ss_dssp HHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccc
Confidence 45555666655432 223334343 4456799999999999998887653 34467778873
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.73 E-value=1.1 Score=34.05 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=60.1
Q ss_pred HhccCcCCcceEEEEcC-C-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC--------CCCC-C
Q 017595 199 DSYNGFEQIKQLVDVGG-G-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER--------IPKG-D 266 (369)
Q Consensus 199 ~~~~~~~~~~~vLDvG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--------~p~~-D 266 (369)
+..+ .....+||=+|| | .|..+..+++.....++++.+. +.-.+.+++..--.++..+-.+. .+.+ |
T Consensus 21 ~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 21 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred HHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 3344 566788999996 3 6777788888776678888886 55555544322112333222111 1233 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCCEEEEEecc
Q 017595 267 AILMKWILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRM 305 (369)
Q Consensus 267 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~ 305 (369)
+++-... . ...++.+.++++|||+++++-..
T Consensus 100 ~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 100 AVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEESCC-----C---HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhcccc-----c---chHHHhhhhhcccCCEEEEeccc
Confidence 7764432 1 24567788999999999988654
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=85.63 E-value=0.39 Score=31.10 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecChhchhhh
Q 017595 61 PGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAKYFV 122 (369)
Q Consensus 61 ~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~~~~ 122 (369)
++++-|..-|+++.++ +=..|+|.|-.|.+.|+++....++ +.+.=++|+.+..++
T Consensus 21 ~g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~ed--G~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 21 GATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEAD--GRGHASLTQEGAALA 76 (81)
T ss_dssp TCCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTT--SCEEEEECHHHHHHH
T ss_pred CCCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccC--CcceeeccHHHHHHH
Confidence 3469999999999999 8899999999999999997654332 346778888777655
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=85.44 E-value=2.1 Score=32.44 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=58.2
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCC--C---C--CCCC-CEEEeccc
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMF--E---R--IPKG-DAILMKWI 273 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~--~---~--~p~~-D~v~~~~v 273 (369)
.++..+||=+|+| .|.++..+++.....++++.|. +.-.+.+++.....++..+-. + . -+.+ |+++-.--
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 3456788889987 4556677777766667888887 655666555433344433211 1 0 1223 76653322
Q ss_pred cccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 274 LHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 274 lh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. ...++...+.|+|||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEEEEEEEECCC
T ss_pred -----c---chHHHHHHHHHhCCCEEEEEeC
Confidence 1 2457888999999999998764
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=0.36 Score=31.33 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCc-ccHHHHHHHHhcCccccccccCCCCCCcceecChhch
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTG-VMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLAPVAK 119 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t~~~~ 119 (369)
++-.|++.|... |+.++-.||..+|+ .. .-+-+.|..|...|.+.+. +..+-.|.++....
T Consensus 6 ~eekI~~~L~~~---g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~----~~tPP~W~L~~~~~ 67 (73)
T d1xmka1 6 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ----GTTPPIWHLTDKKR 67 (73)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE----CSSSCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecC----CCCCCceeeecchh
Confidence 567789999886 48999999999999 66 3599999999999999874 11345787776543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.63 E-value=0.78 Score=34.79 Aligned_cols=92 Identities=10% Similarity=0.092 Sum_probs=57.1
Q ss_pred cCCcceEEEEcCC-hhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCCC-------CCCCEEEecccc
Q 017595 204 FEQIKQLVDVGGG-LGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFERI-------PKGDAILMKWIL 274 (369)
Q Consensus 204 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~-------p~~D~v~~~~vl 274 (369)
.+...+||=+|+| .|.++..+++.. +.+++.+|. +.-.+.+++..--.++..+-.+.. ...|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 5566778889987 567777788776 489999998 666666665433333332211110 11233332221
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 275 HNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 275 h~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
. ...++.+.+.|+|||+++++-.
T Consensus 103 ---~----~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 103 ---S----NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp ---C----HHHHHHHHTTEEEEEEEEECCC
T ss_pred ---c----chHHHHHHHHhcCCcEEEEEEe
Confidence 1 2457888999999999998753
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=83.37 E-value=0.37 Score=31.05 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 62 GAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 62 ~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
+..++..+||+.+|+ ...-+++-|+.|++.|++...
T Consensus 23 G~~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 58 (69)
T d2hs5a1 23 GARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE 58 (69)
T ss_dssp TCEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 347789999999999 999999999999999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.32 E-value=1.6 Score=33.19 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=57.4
Q ss_pred cCCcceEEEEcC--ChhHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeC---CCCCC-----CCCC-CEEEec
Q 017595 204 FEQIKQLVDVGG--GLGVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGG---NMFER-----IPKG-DAILMK 271 (369)
Q Consensus 204 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~~-----~p~~-D~v~~~ 271 (369)
.....+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++.. |+.+. -+.+ |+|+-.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 566789999985 5888899998776 567776665 655555554422223321 22111 1223 777643
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCCEEEEEec
Q 017595 272 WILHNWDDEHCLTLLKNCYEAIPENGKIIIIDR 304 (369)
Q Consensus 272 ~vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~ 304 (369)
- . ...++...++|+|+|+++.+-.
T Consensus 105 ~-----g----~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp C-----H----HHHHHHHHHHEEEEEEEEECCC
T ss_pred c-----c----HHHHHHHHhccCCCCEEEEEec
Confidence 2 1 2457888899999999998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.25 E-value=5.6 Score=28.37 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=49.7
Q ss_pred eEEEEcCChhHHHHHHHHhC--CCCeEEEcch-hHHHHhCCCCCCceEEeCCCCCC-------CCCCCEEEeccccccCC
Q 017595 209 QLVDVGGGLGVTLNIITSRY--PHIEGVNFDL-PHVIQNAPSYRGVKHIGGNMFER-------IPKGDAILMKWILHNWD 278 (369)
Q Consensus 209 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 278 (369)
+|+=+|+| .++..+++.. .+..++++|. |+.++.....-++.++.||..++ +...|.++.. .+
T Consensus 2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 56777775 4444444332 2467888887 77766654434678999999872 1233776653 22
Q ss_pred hhHHHHHHHHHHHhCCCCCEE
Q 017595 279 DEHCLTLLKNCYEAIPENGKI 299 (369)
Q Consensus 279 d~~~~~~L~~~~~~L~pgG~l 299 (369)
+++.-.+.....+.+.+.-.+
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHHHHHcCCceEE
Confidence 333334555666778887433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=82.20 E-value=0.72 Score=35.53 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=59.3
Q ss_pred cCCcceEEEEcCCh-hHHHHHHHHhCCCCeEEEcch-hHHHHhCCCCCCceEEeC---CCCC---CC--CCC-CEEEecc
Q 017595 204 FEQIKQLVDVGGGL-GVTLNIITSRYPHIEGVNFDL-PHVIQNAPSYRGVKHIGG---NMFE---RI--PKG-DAILMKW 272 (369)
Q Consensus 204 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~---~~--p~~-D~v~~~~ 272 (369)
.+...+||=+|||. |.++..+++...-.++++.|. +.-.+.+++..-..++.. ++.+ .. +.+ |+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 55667888899985 888888888764447888888 665666554322222211 1111 01 123 8765432
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCCEEEEEeccC
Q 017595 273 ILHNWDDEHCLTLLKNCYEAIPENGKIIIIDRMP 306 (369)
Q Consensus 273 vlh~~~d~~~~~~L~~~~~~L~pgG~lli~e~~~ 306 (369)
- .+ ..++.+.+.++|+|+++++-...
T Consensus 105 g-----~~---~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 105 G-----GS---ETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp S-----CT---THHHHHHHHEEEEEEEEECCCCC
T ss_pred C-----CH---HHHHHHHHHHhcCCEEEEEeecC
Confidence 2 11 45778889999999999976543
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.86 E-value=0.53 Score=31.69 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=37.8
Q ss_pred ChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 51 GVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 51 glfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
.|++.|.+.+ +.+|=++||+.+|+ ...-+++.|..|...|++...
T Consensus 22 ~v~~~L~~~~--~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhcc--CcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence 4677765422 37999999999999 999999999999999999764
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.48 E-value=0.48 Score=28.27 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=45.0
Q ss_pred HHhChhHHHHhcCCCCCCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceec
Q 017595 48 AELGVFEIIAKAGPGAKLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSL 114 (369)
Q Consensus 48 ~~lglfd~L~~~~~~~~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~ 114 (369)
+|-.|++.|.+.| +|+-..+|+..... +..-+.+.|..|-..+-+... +.++|.+
T Consensus 2 LEQkILQVL~dag--spvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~------~patW~l 56 (57)
T d1j75a_ 2 LEQKILQVLSDDG--GPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP------EPATWSI 56 (57)
T ss_dssp HHHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE------ETTEEEE
T ss_pred HHHHHHHHHHhcC--CchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC------CCccccC
Confidence 3567888998875 69999999999999 888999999999998888764 4556543
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=81.29 E-value=0.75 Score=30.24 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCCC-CHHHHHHhCCCCCCCCcccHHHHHHHHhcCccccccccCCCCCCcceecC
Q 017595 62 GAKL-SAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCSLSSAGDNQRLYSLA 115 (369)
Q Consensus 62 ~~~~-t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~y~~t 115 (369)
+..+ |..+||+.+++ +..-+++-|+.|++.|++.... ..|.|...
T Consensus 19 G~~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~~-----g~G~~V~~ 64 (78)
T d3bwga1 19 GDKLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQVR-----GSGIFVRK 64 (78)
T ss_dssp TCBCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEET-----TTEEEECC
T ss_pred cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEEc-----CcEEEEcc
Confidence 3467 89999999999 9999999999999999998752 34566543
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| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=80.33 E-value=0.54 Score=30.60 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCCHHHHHHhCCCCCCCCcccHHHHHHHHhcCcccccc
Q 017595 64 KLSAAQIAAQMPSRNPNTGVMLDRILRLLVTNRVLRCS 101 (369)
Q Consensus 64 ~~t~~~La~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 101 (369)
++|-++||..+|+ ....+.|.|..|...|++...
T Consensus 27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~~ 60 (73)
T d1zyba1 27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH 60 (73)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE
T ss_pred ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 6799999999999 999999999999999999863
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