Citrus Sinensis ID: 017613

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MSCSNLPVCRDTSSLSFGSFLNPFRPPHNATPNNPSRSSSVTPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHccccccHHHHHHcccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccccEEEcccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccEEcccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcEEcccccccEEEEEccccccccHccccccEEEcccccEEEEEccccEEEEEEEccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mscsnlpvcrdtsslsfgsflnpfrpphnatpnnpsrsssvtpihcGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQeavvngrpfSETLVEVLYNINEqlqnedidvplikvrpvKKVALVVVTgdrglcggfnnNIIKKAEARIAELKTLGLDYTIisvgkkgnayflrrpyipvdrfleggslptakeaQTIADDVFSLFVSEEVDKVELLYTKFVSlvksdpvihtllplsprgeicdvngvcvdAAEDEFFRLTTKEGKLTVERDvvrtetasfspilqfeqdPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
mscsnlpvcrdtsslSFGSFLNPFRPPHnatpnnpsrsssvTPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRaqeavvngrpfSETLVEVLYNINEQlqnedidvplikvrpVKKVALVvvtgdrglcggfnnnIIKKAEARIAELKTLGLDYTiisvgkkgnayfLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFvslvksdpvihtllplsprgeiCDVNGVCVDAAEDEFfrlttkegkltverdvvrtetasfspilqfeqDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
MSCSNLPVCRDTSSLSFGSFLNPFRPPHNATPNNPSRSSSVTPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIkvrpvkkvalvvvTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
*******************************************IHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQ**************************NLSIVYNRQRQAKITGEILEIVAG*****
***********************************************LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQ*Q**DI***LIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTK***************ASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
**********DTSSLSFGSFLNPFRPPHN************TPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
*******************FLNPFR***********************RELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSCSNLPVCRDTSSLSFGSFLNPFRPPHNATPNNPSRSSSVTPIHCGxxxxxxxxxxxxxxxxxxxxxKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADALV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
P29790377 ATP synthase gamma chain, N/A no 1.0 0.976 0.840 0.0
Q01908373 ATP synthase gamma chain yes no 0.997 0.983 0.810 1e-172
P28552376 ATP synthase gamma chain, N/A no 0.978 0.957 0.795 1e-167
P05435364 ATP synthase gamma chain, N/A no 0.921 0.931 0.832 1e-165
P0C1M0359 ATP synthase subunit gamm N/A no 0.902 0.924 0.790 1e-154
Q01909386 ATP synthase gamma chain no no 0.945 0.901 0.721 1e-143
P12113358 ATP synthase gamma chain, N/A no 0.940 0.966 0.590 1e-118
B8HPK2315 ATP synthase gamma chain yes no 0.847 0.990 0.582 1e-101
Q3M9W1315 ATP synthase gamma chain yes no 0.842 0.984 0.582 1e-101
B7KKR3314 ATP synthase gamma chain yes no 0.845 0.990 0.568 1e-100
>sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1 Back     alignment and function desciption
 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/377 (84%), Positives = 346/377 (91%), Gaps = 9/377 (2%)

Query: 1   MSCSNLPVC-------RDTSSLSFGSFLNPFR-PPHNAT-PNNPSRSSSVTPIHCGLREL 51
           MSCSNL +         D+S+LSF S ++PF+ P HN + P+NPSRSSSVTP+HCGLR+L
Sbjct: 1   MSCSNLTMLVSSKPSLSDSSALSFRSSVSPFQLPNHNTSGPSNPSRSSSVTPVHCGLRDL 60

Query: 52  RERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDV 111
           R+RI+SVKNTQKITEAMKLVAAAKVRRAQEAVV  RPFSETLVEVLYNINEQLQ +DIDV
Sbjct: 61  RDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDIDV 120

Query: 112 PLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAY 171
           PL KVRPVKKVALVVVTGDRGLCGGFNN +IKKAEARI +LK LG+DYTIISVGKKGN+Y
Sbjct: 121 PLTKVRPVKKVALVVVTGDRGLCGGFNNYLIKKAEARIRDLKALGIDYTIISVGKKGNSY 180

Query: 172 FLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVI 231
           F+RRPYIPVD+FLEG +LPTAK+AQ IADDVFSLFVSEEVDKVELLYTKFVSLVKS+PVI
Sbjct: 181 FIRRPYIPVDKFLEGSNLPTAKDAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPVI 240

Query: 232 HTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQD 291
           HTLLPLSP+GEICD+NG CVDAA DEFFRLTTKEGKLTVERD++RT+T  FSPILQFEQD
Sbjct: 241 HTLLPLSPKGEICDINGNCVDAANDEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQD 300

Query: 292 PVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQA 351
           PVQILDALLPLYLNSQILRALQESLASELA+RMSAMS+ATDNA ELKKNLS VYNRQRQA
Sbjct: 301 PVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQA 360

Query: 352 KITGEILEIVAGADALV 368
           KITGEILEIVAGADALV
Sbjct: 361 KITGEILEIVAGADALV 377
Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
Nicotiana tabacum (taxid: 4097)
>sp|Q01908|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic OS=Arabidopsis thaliana GN=ATPC1 PE=1 SV=1 Back     alignment and function description
>sp|P28552|ATPG_PEA ATP synthase gamma chain, chloroplastic OS=Pisum sativum GN=ATPC PE=2 SV=1 Back     alignment and function description
>sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplastic OS=Spinacia oleracea GN=ATPC PE=1 SV=2 Back     alignment and function description
>sp|P0C1M0|ATPG_MAIZE ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|Q01909|ATPG2_ARATH ATP synthase gamma chain 2, chloroplastic OS=Arabidopsis thaliana GN=ATPC2 PE=2 SV=1 Back     alignment and function description
>sp|P12113|ATPG_CHLRE ATP synthase gamma chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPC PE=1 SV=1 Back     alignment and function description
>sp|B8HPK2|ATPG_CYAP4 ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|Q3M9W1|ATPG_ANAVT ATP synthase gamma chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|B7KKR3|ATPG_CYAP7 ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
224078604375 predicted protein [Populus trichocarpa] 0.997 0.978 0.866 0.0
356548953375 PREDICTED: ATP synthase gamma chain, chl 0.994 0.976 0.856 0.0
356555666368 PREDICTED: ATP synthase gamma chain, chl 0.994 0.994 0.872 0.0
255640074368 unknown [Glycine max] 0.994 0.994 0.869 0.0
449454742373 PREDICTED: ATP synthase gamma chain, chl 0.989 0.975 0.872 0.0
307136215373 ATP synthase [Cucumis melo subsp. melo] 0.989 0.975 0.869 0.0
255554879376 ATP synthase gamma chain 2, chloroplast, 0.997 0.976 0.872 1e-180
225444525372 PREDICTED: ATP synthase gamma chain, chl 0.989 0.978 0.867 1e-179
231610377 RecName: Full=ATP synthase gamma chain, 1.0 0.976 0.840 1e-179
449433954371 PREDICTED: ATP synthase gamma chain, chl 0.934 0.927 0.902 1e-176
>gi|224078604|ref|XP_002305572.1| predicted protein [Populus trichocarpa] gi|118489494|gb|ABK96549.1| unknown [Populus trichocarpa x Populus deltoides] gi|222848536|gb|EEE86083.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/374 (86%), Positives = 340/374 (90%), Gaps = 7/374 (1%)

Query: 1   MSCSNL-------PVCRDTSSLSFGSFLNPFRPPHNATPNNPSRSSSVTPIHCGLRELRE 53
           MSCSNL       P   DT+SLSF S LNPF+ P +   NNPSRS+SVTPIHCGLRELR 
Sbjct: 1   MSCSNLTMLVSSKPSLSDTTSLSFRSSLNPFQLPSSPAANNPSRSTSVTPIHCGLRELRT 60

Query: 54  RIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPL 113
           RI SVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ +D+D PL
Sbjct: 61  RIQSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVDAPL 120

Query: 114 IKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFL 173
            KVRPVKKVALVVVTGDRGLCGGFNN +IKKAEARIA+LK LG+DYTIISVGKKGN YFL
Sbjct: 121 TKVRPVKKVALVVVTGDRGLCGGFNNYLIKKAEARIADLKQLGIDYTIISVGKKGNTYFL 180

Query: 174 RRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHT 233
           RRPYIPVDRFLE G LPTAKEAQ IADDVFSLFVSEEVDKVELLYTKFVSLVKS+PVIHT
Sbjct: 181 RRPYIPVDRFLEKGGLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSEPVIHT 240

Query: 234 LLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPV 293
           LLPLSP+GEICDVNGVCVDAAEDEFFRLTT+EGKLTVER V RT T  FSPILQFEQDPV
Sbjct: 241 LLPLSPKGEICDVNGVCVDAAEDEFFRLTTREGKLTVERGVSRTATTDFSPILQFEQDPV 300

Query: 294 QILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKI 353
           QILDALLPLYLNSQIL+ALQESLASELA+RMSAMSNATDNA ELKK+LS+VYNRQRQAKI
Sbjct: 301 QILDALLPLYLNSQILKALQESLASELAARMSAMSNATDNASELKKSLSMVYNRQRQAKI 360

Query: 354 TGEILEIVAGADAL 367
           TGEILEIVAGADAL
Sbjct: 361 TGEILEIVAGADAL 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356548953|ref|XP_003542863.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 1 [Glycine max] gi|356548955|ref|XP_003542864.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 2 [Glycine max] gi|356548957|ref|XP_003542865.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 3 [Glycine max] gi|356548959|ref|XP_003542866.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|356555666|ref|XP_003546151.1| PREDICTED: ATP synthase gamma chain, chloroplastic [Glycine max] Back     alignment and taxonomy information
>gi|255640074|gb|ACU20328.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449454742|ref|XP_004145113.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449474626|ref|XP_004154236.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449488358|ref|XP_004158011.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307136215|gb|ADN34052.1| ATP synthase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|255554879|ref|XP_002518477.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] gi|223542322|gb|EEF43864.1| ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225444525|ref|XP_002275015.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|231610|sp|P29790.1|ATPG_TOBAC RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor gi|19785|emb|CAA45152.1| ATP synthase (gamma subunit) [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449433954|ref|XP_004134761.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] gi|449479457|ref|XP_004155604.1| PREDICTED: ATP synthase gamma chain, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2135054373 ATPC1 [Arabidopsis thaliana (t 0.989 0.975 0.779 5.7e-146
TAIR|locus:2036149386 ATPC2 [Arabidopsis thaliana (t 0.994 0.948 0.676 1.5e-122
UNIPROTKB|P17253314 atpG "ATP synthase gamma chain 0.845 0.990 0.531 4.7e-80
TIGR_CMR|GSU_0112287 GSU_0112 "ATP synthase F1, gam 0.508 0.651 0.386 2e-45
TIGR_CMR|DET_0563285 DET_0563 "ATP synthase F1, gam 0.510 0.659 0.341 1.4e-40
TIGR_CMR|SO_4748286 SO_4748 "ATP synthase F1, gamm 0.521 0.671 0.309 7.4e-40
UNIPROTKB|Q9KNH4288 atpG "ATP synthase gamma chain 0.529 0.677 0.316 1.2e-39
TIGR_CMR|VC_2765288 VC_2765 "ATP synthase F1, gamm 0.529 0.677 0.316 1.2e-39
TIGR_CMR|CPS_0061287 CPS_0061 "ATP synthase F1, gam 0.516 0.662 0.333 2.5e-39
UNIPROTKB|P0ABA6287 atpG [Escherichia coli K-12 (t 0.505 0.648 0.314 6.5e-39
TAIR|locus:2135054 ATPC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
 Identities = 294/377 (77%), Positives = 326/377 (86%)

Query:     1 MSCSNL--------P-VCRDTSSLSFGSFLNPFRPPHNATPNNPSRSSSVTPIHCGLREL 51
             M+CSNL        P +  D+SSLSF S L    P + ++P  PSR+SSV+P+   LREL
Sbjct:     1 MACSNLTTMWVSSKPSLSADSSSLSFRSVLKC--PTNTSSP--PSRASSVSPLQASLREL 56

Query:    52 RERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDV 111
             R+RIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ +D+DV
Sbjct:    57 RDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVDV 116

Query:   112 PLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAY 171
             PL              TGDRGLCGGFNN IIKKAEARI ELK LGL+YT+ISVGKKGN+Y
Sbjct:   117 PLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSY 176

Query:   172 FLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVI 231
             FLRRPYIPVD++LE G+LPTAKEAQ +ADDVFSLF+SEEVDKVELLYTKFVSLVKS+PVI
Sbjct:   177 FLRRPYIPVDKYLEAGTLPTAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLVKSEPVI 236

Query:   232 HTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQD 291
             HTLLPLSP+GEICD+NG CVDAAEDEFFRLTTKEGKLTVER+  RT TA FSPILQFEQD
Sbjct:   237 HTLLPLSPKGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETFRTPTADFSPILQFEQD 296

Query:   292 PVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQA 351
             PVQILDALLPLYLNSQILRALQESLASELA+RMSAMS+A+DNA +LKK+LS+VYNR+RQA
Sbjct:   297 PVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQA 356

Query:   352 KITGEILEIVAGADALV 368
             KITGEILEIVAGA+A V
Sbjct:   357 KITGEILEIVAGANAQV 373
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;TAS
GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA
GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA
GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006754 "ATP biosynthetic process" evidence=IMP
GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009544 "chloroplast ATP synthase complex" evidence=TAS
GO:0030234 "enzyme regulator activity" evidence=TAS
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2036149 ATPC2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P17253 atpG "ATP synthase gamma chain" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0112 GSU_0112 "ATP synthase F1, gamma subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0563 DET_0563 "ATP synthase F1, gamma subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4748 SO_4748 "ATP synthase F1, gamma subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNH4 atpG "ATP synthase gamma chain" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2765 VC_2765 "ATP synthase F1, gamma subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0061 CPS_0061 "ATP synthase F1, gamma subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABA6 atpG [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7V5S8ATPG_PROMMNo assigned EC number0.50310.84230.9810yesno
P29790ATPG_TOBACNo assigned EC number0.84081.00.9761N/Ano
Q318U2ATPG_PROM9No assigned EC number0.53100.84230.9810yesno
B7K5I9ATPG_CYAP8No assigned EC number0.55140.84230.9872yesno
A8G6V0ATPG_PROM2No assigned EC number0.51550.84230.9810yesno
Q06908ATPG_ODOSINo assigned EC number0.51140.88850.8837N/Ano
Q3AHK6ATPG_SYNSCNo assigned EC number0.53840.84510.9841yesno
A5GNC7ATPG_SYNPWNo assigned EC number0.51680.83960.9778yesno
B0BZL3ATPG_ACAM1No assigned EC number0.55590.84510.9810yesno
Q8DLU1ATPG_THEEBNo assigned EC number0.55720.84780.9904yesno
P08450ATPG_SYNP6No assigned EC number0.55100.84780.9873yesno
Q2JSW2ATPG_SYNJANo assigned EC number0.52790.85050.9968yesno
P0C1M0ATPG_MAIZENo assigned EC number0.79040.90210.9247N/Ano
B1XHY7ATPG_SYNP2No assigned EC number0.55140.84230.9872yesno
Q7VA64ATPG_PROMANo assigned EC number0.51070.83420.9715yesno
Q2JIG1ATPG_SYNJBNo assigned EC number0.52170.85050.9968yesno
B0JWV2ATPG_MICANNo assigned EC number0.55450.84510.9873yesno
Q112Z7ATPG_TRIEINo assigned EC number0.51250.84510.9904yesno
A3PET8ATPG_PROM0No assigned EC number0.51550.84230.9810yesno
P12113ATPG_CHLRENo assigned EC number0.59020.94020.9664N/Ano
P12408ATPG_NOSS1No assigned EC number0.57630.84230.9841yesno
Q2LGZ2ATPG_VIGUNNo assigned EC number0.93850.30970.9661N/Ano
B1WUI3ATPG_CYAA5No assigned EC number0.55140.84230.9872yesno
Q7NDC0ATPG_GLOVINo assigned EC number0.51080.83420.9777yesno
B8HPK2ATPG_CYAP4No assigned EC number0.58200.84780.9904yesno
Q0I7R3ATPG_SYNS3No assigned EC number0.52460.84230.9779yesno
P17253ATPG_SYNY3No assigned EC number0.55310.84510.9904N/Ano
A9BCD8ATPG_PROM4No assigned EC number0.50610.84780.9873yesno
Q3M9W1ATPG_ANAVTNo assigned EC number0.58250.84230.9841yesno
A5GV71ATPG_SYNR3No assigned EC number0.50770.85320.9968yesno
B2J059ATPG_NOSP7No assigned EC number0.55720.84780.9904yesno
Q7U8W4ATPG_SYNPXNo assigned EC number0.53230.84510.9841yesno
Q3AZM0ATPG_SYNS9No assigned EC number0.51700.84510.9810yesno
Q41075ATPG_PHATRNo assigned EC number0.55140.82880.8243yesno
Q7V038ATPG_PROMPNo assigned EC number0.53100.84230.9810yesno
A2C4J4ATPG_PROM1No assigned EC number0.54010.84780.9873yesno
P50006ATPG_SPIPLNo assigned EC number0.53450.83420.9871N/Ano
B7KKR3ATPG_CYAP7No assigned EC number0.56870.84510.9904yesno
P05435ATPG_SPIOLNo assigned EC number0.83230.92110.9313N/Ano
A2BYH5ATPG_PROM5No assigned EC number0.52170.84230.9810yesno
Q46J58ATPG_PROMTNo assigned EC number0.53700.84780.9873yesno
A2BT24ATPG_PROMSNo assigned EC number0.51550.84230.9810yesno
A2C6X6ATPG_PROM3No assigned EC number0.50310.84230.9810yesno
Q05384ATPG_SYNP1No assigned EC number0.56070.84230.9841N/Ano
Q01909ATPG2_ARATHNo assigned EC number0.72140.94560.9015nono
Q01908ATPG1_ARATHNo assigned EC number0.81010.99720.9839yesno
Q31RF0ATPG_SYNE7No assigned EC number0.55100.84780.9873yesno
P28552ATPG_PEANo assigned EC number0.79560.97820.9574N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
PRK05621284 PRK05621, PRK05621, F0F1 ATP synthase subunit gamm 1e-128
TIGR01146286 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma 1e-125
cd12151282 cd12151, F1-ATPase_gamma, mitochondrial ATP syntha 1e-118
pfam00231288 pfam00231, ATP-synt, ATP synthase 1e-117
COG0224287 COG0224, AtpG, F0F1-type ATP synthase, gamma subun 1e-113
PRK13423288 PRK13423, PRK13423, F0F1 ATP synthase subunit gamm 2e-82
PRK14111290 PRK14111, PRK14111, F0F1 ATP synthase subunit gamm 3e-72
PRK13425291 PRK13425, PRK13425, F0F1 ATP synthase subunit gamm 3e-67
PRK13427289 PRK13427, PRK13427, F0F1 ATP synthase subunit gamm 9e-65
PRK14110291 PRK14110, PRK14110, F0F1 ATP synthase subunit gamm 6e-63
PRK13426291 PRK13426, PRK13426, F0F1 ATP synthase subunit gamm 4e-61
PRK13424291 PRK13424, PRK13424, F0F1 ATP synthase subunit gamm 7e-57
PRK13422298 PRK13422, PRK13422, F0F1 ATP synthase subunit gamm 2e-40
TIGR03323285 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, 3e-21
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information 
 Score =  368 bits (947), Expect = e-128
 Identities = 134/321 (41%), Positives = 186/321 (57%), Gaps = 39/321 (12%)

Query: 47  GLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQN 106
            L+E+R RI SVKNTQKIT+AM++VAA+K+R+AQE     RP++E + +V+ ++      
Sbjct: 3   SLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHL---ASA 59

Query: 107 EDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGK 166
            + D PL+  R VK+V  +VVT DRGLCGG+N+NIIKK    I EL+  G +  +I +G+
Sbjct: 60  SEYDHPLLVEREVKRVGYIVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGR 119

Query: 167 KGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVK 226
           KG  +F RR    V  +   G  PT +EA  IA  +   + + E D++ ++Y KFV+ + 
Sbjct: 120 KGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTLS 179

Query: 227 SDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPIL 286
            +P +  LLPL                                        E    S   
Sbjct: 180 QEPTVEQLLPLE------------------------------------KEEEEEETSWDY 203

Query: 287 QFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYN 346
           ++E D  +ILDALLP Y+ SQI +AL E+ ASE A+RM+AM NATDNA +L K L++VYN
Sbjct: 204 EYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYN 263

Query: 347 RQRQAKITGEILEIVAGADAL 367
           R RQA IT EI EIV GA+AL
Sbjct: 264 RARQAAITQEITEIVGGAEAL 284

Length = 284
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit Back     alignment and domain information
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit Back     alignment and domain information
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase Back     alignment and domain information
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
COG0224287 AtpG F0F1-type ATP synthase, gamma subunit [Energy 100.0
PRK13427289 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14111290 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13426291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13423288 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13424291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13425291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13422298 F0F1 ATP synthase subunit gamma; Provisional 100.0
PF00231290 ATP-synt: ATP synthase This Pfam entry corresponds 100.0
PRK14110291 F0F1 ATP synthase subunit gamma; Provisional 100.0
TIGR01146287 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi 100.0
PRK05621284 F0F1 ATP synthase subunit gamma; Validated 100.0
TIGR03323285 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit 100.0
KOG1531304 consensus F0F1-type ATP synthase, gamma subunit [E 100.0
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2e-84  Score=618.15  Aligned_cols=286  Identities=48%  Similarity=0.718  Sum_probs=261.3

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCccccc-CCCceEEEEEE
Q 017613           49 RELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKV-RPVKKVALVVV  127 (368)
Q Consensus        49 keIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~-~~~k~~~~Ivi  127 (368)
                      ++||+||+||++|+||||||||||+|||||+|+++.+.+||++++++++.++...  ..+..||++.. ++.+++++|||
T Consensus         1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~Ivi   78 (287)
T COG0224           1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI   78 (287)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc--ccccCCcccccccCCCceEEEEE
Confidence            5899999999999999999999999999999999999999999999999999874  12356787766 77899999999


Q ss_pred             eCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHHhhh
Q 017613          128 TGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFV  207 (368)
Q Consensus       128 tSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~~~~  207 (368)
                      |||||||||||+||+|.+...+++++..+.++.+++||+||.++|+++|++++..+.++++.|+|+.+..|++.+++.|.
T Consensus        79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~  158 (287)
T COG0224          79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFL  158 (287)
T ss_pred             ecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988888889999999999999999888778788888889999999999999999999


Q ss_pred             cCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCCccc
Q 017613          208 SEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQ  287 (368)
Q Consensus       208 ~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (368)
                      +|++|+|+|+||+|+|+++|+|+.++|||++..+.            ....                .  .+.  ..+|+
T Consensus       159 ~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~------------~~~~----------------~--~~~--~~~~e  206 (287)
T COG0224         159 EGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIED------------EAEE----------------E--EPG--LWDYE  206 (287)
T ss_pred             CCCCceEEEEecccccceeeeeeeEEEecCCcccc------------hhhh----------------c--ccc--cccee
Confidence            99999999999999999999999999999975210            0000                0  000  13789


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccc
Q 017613          288 FEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL  367 (368)
Q Consensus       288 fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGaeAl  367 (368)
                      |||+++++|+.|+|+|+.++||+|++||.||||+|||+||++|||||++||++|++.|||+||++||+||+|||+||+||
T Consensus       207 fEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL  286 (287)
T COG0224         207 FEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL  286 (287)
T ss_pred             eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 017613          368 V  368 (368)
Q Consensus       368 ~  368 (368)
                      .
T Consensus       287 ~  287 (287)
T COG0224         287 E  287 (287)
T ss_pred             C
Confidence            4

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit Back     alignment and domain information
>PRK05621 F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
2qe7_G286 Crystal Structure Of The F1-Atpase From The Thermoa 2e-49
3oaa_G286 Structure Of The E.Coli F1-Atp Synthase Inhibited B 3e-37
2xok_G311 Refined Structure Of Yeast F1c10 Atpase Complex To 8e-22
2f43_G273 Rat Liver F1-atpase Length = 273 9e-22
1mab_G270 Rat Liver F1-Atpase Length = 270 1e-21
2hld_G278 Crystal Structure Of Yeast Mitochondrial F1-Atpase 3e-21
2w6e_G298 Low Resolution Structures Of Bovine Mitochondrial F 3e-21
1cow_G272 Bovine Mitochondrial F1-Atpase Complexed With Aurov 3e-21
2jdi_G273 Ground State Structure Of F1-Atpase From Bovine Hea 3e-21
3oe7_G278 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 1e-20
1fs0_G230 Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Le 8e-20
1ohh_G100 Bovine Mitochondrial F1-Atpase Complexed With The I 1e-07
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 169/321 (52%), Gaps = 38/321 (11%)
Query: 47  GLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQN 106
           G+RE++ RI SVKNT++IT+AMK+VAAAK+RRAQE   N RP+++ + EV+ +I      
Sbjct: 3   GMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSI--AAGT 60
Query: 107 EDIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGK 166
           +D   P++             T DRGL G +N NI++     I E      +Y I +VG+
Sbjct: 61  KDFSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGR 120
Query: 167 KGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVK 226
           KG  +F +R Y  V+        P+  E Q IA     +F  E  DK+ + Y +FVS + 
Sbjct: 121 KGRDFFKKRGYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIV 180
Query: 227 SDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPIL 286
             PV   LLPL+   E+ D                    G ++                 
Sbjct: 181 QRPVEKQLLPLTSE-EVLD--------------------GPVSA---------------Y 204
Query: 287 QFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYN 346
           ++E D   +L+ LLP Y  + I  AL ++ ASE  +RM+AM NATDNA E+ + L++ +N
Sbjct: 205 EYEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLTLQFN 264
Query: 347 RQRQAKITGEILEIVAGADAL 367
           R RQA IT EI EIVAGA+AL
Sbjct: 265 RARQAAITQEIAEIVAGANAL 285
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 286 Back     alignment and structure
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311 Back     alignment and structure
>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273 Back     alignment and structure
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270 Back     alignment and structure
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278 Back     alignment and structure
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298 Back     alignment and structure
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272 Back     alignment and structure
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273 Back     alignment and structure
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278 Back     alignment and structure
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Length = 230 Back     alignment and structure
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 1e-127
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 1e-124
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 1e-112
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 1e-111
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 1e-111
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 1e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286 Back     alignment and structure
 Score =  365 bits (939), Expect = e-127
 Identities = 108/321 (33%), Positives = 169/321 (52%), Gaps = 36/321 (11%)

Query: 47  GLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQN 106
           G +E+R +I SV+NTQKIT+AM++VAA+K+R++Q+ +   RP++ET+ +V+ ++     N
Sbjct: 2   GAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHL--AHGN 59

Query: 107 EDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGK 166
            +   P ++ R VK+V  +VV+ DRGLCGG N N+ KK  A +      G+   +  +G 
Sbjct: 60  LEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGS 119

Query: 167 KGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVK 226
           KG ++F       V +    G  P+  E       +   +    +DK+ ++  KF++ + 
Sbjct: 120 KGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMS 179

Query: 227 SDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPIL 286
             P I  LLPL                ++D+                    +    S   
Sbjct: 180 QVPTISQLLPLPA--------------SDDD--------------------DLKHKSWDY 205

Query: 287 QFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYN 346
            +E DP  +LD LL  Y+ SQ+ + + E+LASE A+RM AM  ATDN   L K L +VYN
Sbjct: 206 LYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYN 265

Query: 347 RQRQAKITGEILEIVAGADAL 367
           + RQA IT E+ EIV+GA A+
Sbjct: 266 KARQASITQELTEIVSGAAAV 286
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278 Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311 Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272 Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 100.0
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 100.0
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 100.0
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 100.0
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 100.0
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 100.0
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Back     alignment and structure
Probab=100.00  E-value=2.1e-85  Score=630.55  Aligned_cols=286  Identities=37%  Similarity=0.557  Sum_probs=259.0

Q ss_pred             ccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEEE
Q 017613           46 CGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALV  125 (368)
Q Consensus        46 a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~I  125 (368)
                      |+|+|||+||+||++|+|||+||||||+|||||||+++++.|||++++++++.+++....  +..||++..++.+++++|
T Consensus         1 a~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~I   78 (286)
T 3oaa_G            1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNL--EYKHPYLEDRDVKRVGYL   78 (286)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT--TTCCSSCSCCCCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCc--cccCcccccCCCCcEEEE
Confidence            689999999999999999999999999999999999999999999999999999987542  346788877788899999


Q ss_pred             EEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHHh
Q 017613          126 VVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSL  205 (368)
Q Consensus       126 vitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~~  205 (368)
                      |||||||||||||+||+|.+.+.++++...+.++.+++||+||.++|++++...+..+.++++.|+|+++..|++.+++.
T Consensus        79 vitSDrGLcG~fN~ni~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~~~  158 (286)
T 3oaa_G           79 VVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQA  158 (286)
T ss_dssp             EECCSCCCSTTHHHHHHHHHHHHHHHHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCHHHHHHHHHHHHHH
T ss_pred             EEeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeeccccCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988766677889999999999999988776666666778899999999999999999


Q ss_pred             hhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCCc
Q 017613          206 FVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI  285 (368)
Q Consensus       206 ~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (368)
                      |.+|++|+|+||||+|+|+++|+|+.++|||++..+             ..+                    . ...+.+
T Consensus       159 ~~~g~~d~v~lvyn~f~s~~~q~~~~~~lLPl~~~~-------------~~~--------------------~-~~~~~~  204 (286)
T 3oaa_G          159 YDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD-------------DDD--------------------L-KHKSWD  204 (286)
T ss_dssp             HHTTSCSEEEEEEEEEEETTEEEEEEEECSSCCCCH-------------HHH--------------------S-CCCSCC
T ss_pred             HhcCCCCEEEEEEcccccccccceeEEEecCCCccc-------------ccc--------------------c-ccCCCC
Confidence            999999999999999999999999999999998621             000                    0 001235


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 017613          286 LQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGAD  365 (368)
Q Consensus       286 ~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGae  365 (368)
                      |+|||+++++|+.|+|+|+++.||+|++||.||||+|||+||++|||||+|||++|+++|||+||++||+||+||||||+
T Consensus       205 ~~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~At~NA~eli~~Ltl~yNr~RQa~IT~El~EIv~Ga~  284 (286)
T 3oaa_G          205 YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAA  284 (286)
T ss_dssp             CEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 017613          366 AL  367 (368)
Q Consensus       366 Al  367 (368)
                      ||
T Consensus       285 Al  286 (286)
T 3oaa_G          285 AV  286 (286)
T ss_dssp             --
T ss_pred             hC
Confidence            97
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G* Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Back     alignment and structure
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d2jdig1272 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma 5e-69
d1fs0g_230 c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu 7e-60
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  215 bits (549), Expect = 5e-69
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 50/320 (15%)

Query: 48  LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
           L+++  R+ S+KN QKIT++MK+VAAAK  RA+  +   R +    + +    + +   +
Sbjct: 3   LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPED 62

Query: 108 DIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
                       KK  ++ V+ DRGLCG  ++++ K+ ++  A L   G +  II VG K
Sbjct: 63  -----------KKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDK 111

Query: 168 GNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKS 227
             +   R          +                +  L    E D+  +++ +F S++  
Sbjct: 112 IRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISY 171

Query: 228 DPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQ 287
                                                      +        +S   +  
Sbjct: 172 KT---------------------------------------EEKPIFSLDTISSAESMSI 192

Query: 288 FEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNR 347
           ++     +L       L + I  +L+ES  SE ++RM+AM NA+ NA E+   L++ +NR
Sbjct: 193 YDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 252

Query: 348 QRQAKITGEILEIVAGADAL 367
            RQA IT E++EI++GA AL
Sbjct: 253 TRQAVITKELIEIISGAAAL 272
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d2jdig1272 ATP synthase (F1-ATPase), gamma subunit {Cow (Bos 100.0
d1fs0g_230 ATP synthase (F1-ATPase), gamma subunit {Escherich 100.0
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-75  Score=550.34  Aligned_cols=270  Identities=31%  Similarity=0.451  Sum_probs=171.3

Q ss_pred             ccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEEE
Q 017613           46 CGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALV  125 (368)
Q Consensus        46 a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~I  125 (368)
                      |+|+|||+||+||++|+|||+||||||+||+||||+++++.|||+.....++.+.           ++...++.+++++|
T Consensus         1 A~Lkeik~RI~Sv~~t~kITkAMkmVAasKlrkaq~~~~~~r~Y~~~~~~~~~~~-----------~~~~~~~~~~~l~I   69 (272)
T d2jdig1           1 ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKA-----------DIKTPEDKKKHLII   69 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------------------------CCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHhhccc-----------cchhccccccceeE
Confidence            6899999999999999999999999999999999999999999986655443322           12223456778999


Q ss_pred             EEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcc-eeecccCC-CCCCHHHHHHHHHHHH
Q 017613          126 VVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIP-VDRFLEGG-SLPTAKEAQTIADDVF  203 (368)
Q Consensus       126 vitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~-v~~~~~~~-~~p~~~~a~~i~~~l~  203 (368)
                      |||||||||||||++|+|++.+.+.++...+.+..++++|+||.+++.+.+... +..+...+ ..+++..+..+...+.
T Consensus        70 vitSDrGLcG~fN~~iik~~~~~i~~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  149 (272)
T d2jdig1          70 GVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELL  149 (272)
T ss_dssp             CBCCSCCCSTTHHHHHC------------------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC-
T ss_pred             EEecCCCCCCCccccHHHHHHHHHHHhhccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHH
Confidence            999999999999999999999999877766777889999999999997654333 33333443 4567888777666554


Q ss_pred             HhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCC
Q 017613          204 SLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFS  283 (368)
Q Consensus       204 ~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (368)
                      ..  .+++|+|+|+||+|+|.++|.|..++|+|++..+.                                       ..
T Consensus       150 ~~--~~~~d~v~i~y~~f~~~~~q~p~~~~l~p~~~~~~---------------------------------------~~  188 (272)
T d2jdig1         150 NS--GYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISS---------------------------------------AE  188 (272)
T ss_dssp             -----------CCCCCEECSSSCEECC-----------------------------------------------------
T ss_pred             Hh--hhhcceeEEEeecccccccccceeecccccccccc---------------------------------------cc
Confidence            43  47899999999999999999999999999875210                                       01


Q ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 017613          284 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG  363 (368)
Q Consensus       284 ~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsG  363 (368)
                      ..+.|||+++++|+.|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||||
T Consensus       189 ~~~~~~~~~~~vl~~l~~~yl~~~ly~a~~es~aSE~aaRm~AM~~At~Na~eli~~L~~~yNr~RQ~~IT~El~EIv~G  268 (272)
T d2jdig1         189 SMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISG  268 (272)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q 017613          364 ADAL  367 (368)
Q Consensus       364 aeAl  367 (368)
                      ||||
T Consensus       269 aeAl  272 (272)
T d2jdig1         269 AAAL  272 (272)
T ss_dssp             HHTC
T ss_pred             HhhC
Confidence            9997
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure