Citrus Sinensis ID: 017637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MASSSESAAGLEGSESSIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKIDNSRGS
ccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHccccccEEccEEEccccEEccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEccccccccccccccccccccccccEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEcccccccEEccccccccccccccccccHHHHHHHHHHcccccccccccccccccccc
cccHHHHcccccccccccccHHHHHHcccccccccHHcEcccccccccccccccccccccccEEEHHHccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEcEEEEEcccccHHHHEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHEHcccccc
masssesaaglegsessipsvqelmiknpdkltvpqcflradqeppnfsnggthhfpsipvptidlecllseedtnSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKmryqrkpgdaegygsvagsdgildwgdrfytvtnplhqrkshlfpelppslRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSvrmayyppcptpgqvmglaphsdasgitilhqvngvdgleikkdgvwipahilpdallvNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFfvspkfdaqvgpatslispenpplfirVGMEEFVKTFFSHKLNEKSYLECMKIDNSRGS
masssesaaglegsessipsVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNplhqrkshlfpelppsLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFshklneksylecmkidnsrgs
MasssesaaglegsessIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKIDNSRGS
********************************TVPQCFL**************HHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRY********GYGSVAGSDGILDWGDRFYTVTNPLHQRK*HLF*************YVQ*L******LL**************************MAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECM********
********************VQ**MI*****LTVPQCFLRADQEPPN*******HFPSIPVPTIDLECLLSE*D*NSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLE***ID*****
****************SIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKIDNSRGS
***************SSIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKID*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSSESAAGLEGSESSIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKIDNSRGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.959 0.986 0.448 7e-89
D4N501364 Probable 2-oxoglutarate/F N/A no 0.923 0.934 0.487 4e-88
D4N502360 Codeine O-demethylase OS= N/A no 0.932 0.952 0.480 6e-87
D4N500364 Thebaine 6-O-demethylase N/A no 0.923 0.934 0.465 4e-83
A2A1A0352 S-norcoclaurine synthase N/A no 0.812 0.849 0.395 5e-62
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.796 0.874 0.362 2e-47
Q07512348 Flavonol synthase/flavano N/A no 0.812 0.859 0.360 6e-45
Q9M547334 Flavonol synthase/flavano N/A no 0.785 0.865 0.368 9e-45
Q41452349 Flavonol synthase/flavano N/A no 0.812 0.856 0.336 6e-44
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.817 0.893 0.345 5e-43
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  327 bits (839), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 162/361 (44%), Positives = 234/361 (64%), Gaps = 8/361 (2%)

Query: 6   ESAAGLEGSESSIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTID 65
           E+    + S   +PSVQE M+K     TVP  ++R+DQ+     +        I +P ID
Sbjct: 2   EAKGAAQWSSILVPSVQE-MVKEKTITTVPPRYVRSDQDKTEVDDDFD---VKIEIPIID 57

Query: 66  LECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRY 125
           ++ L S    +S+++ L   CKEWG FQLVNHGI SS L+K+K ++ +F+ LP+EEK ++
Sbjct: 58  MKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKF 117

Query: 126 QRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQE 183
            ++P + EG+G   V   D  LDW D F+    P+  RK HLFP+LP   R TLE Y  E
Sbjct: 118 WQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSE 177

Query: 184 LQKLSMELLGAMGKALKMDAKEMEEMFED--GRQSVRMAYYPPCPTPGQVMGLAPHSDAS 241
           +Q ++  L+  M +AL++  +E+E++F+D    QS+RM YYPPCP P QV+GL PHSD+ 
Sbjct: 178 VQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSV 237

Query: 242 GITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSV 301
           G+T+L QVN V+GL+IKKDG W+P   LP+A +VN+GD+LEI++NG YRS+EHR  VNS 
Sbjct: 238 GLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSE 297

Query: 302 KERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMK 361
           KER+SIA F +     +VGPA SL+  +    F R+ M+E+    FS  L+ K+YL+ ++
Sbjct: 298 KERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALR 357

Query: 362 I 362
           I
Sbjct: 358 I 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q41452|FLS_SOLTU Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
225466129357 PREDICTED: protein SRG1 [Vitis vinifera] 0.959 0.988 0.620 1e-124
225466131356 PREDICTED: protein SRG1 [Vitis vinifera] 0.956 0.988 0.618 1e-123
297740603424 unnamed protein product [Vitis vinifera] 0.926 0.804 0.633 1e-123
224061029365 predicted protein [Populus trichocarpa] 0.967 0.975 0.597 1e-123
225462494359 PREDICTED: protein SRG1-like [Vitis vini 0.940 0.963 0.621 1e-123
225462488359 PREDICTED: protein SRG1 [Vitis vinifera] 0.940 0.963 0.624 1e-122
297740599393 unnamed protein product [Vitis vinifera] 0.926 0.867 0.627 1e-122
225462482359 PREDICTED: protein SRG1 [Vitis vinifera] 0.940 0.963 0.618 1e-122
359483581363 PREDICTED: protein SRG1-like [Vitis vini 0.929 0.942 0.627 1e-122
147768620356 hypothetical protein VITISV_010885 [Viti 0.956 0.988 0.615 1e-122
>gi|225466129|ref|XP_002267208.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/364 (62%), Positives = 277/364 (76%), Gaps = 11/364 (3%)

Query: 1   MASSSESAAGLEGSESSIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIP 60
           MASS  S++   G+  SI S+QEL  K P   TVPQ FL  DQE P          P IP
Sbjct: 1   MASSIPSSSF--GTPPSILSIQELA-KQP-MATVPQIFLLEDQERPVLRENAA--LPDIP 54

Query: 61  VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
             TID++ L+  E T+ +LD L + CKEWG FQLVNHG+ SSL+E LKH++VEFYKLP+E
Sbjct: 55  --TIDMKRLIMSETTDFELDKLHSACKEWGFFQLVNHGVSSSLVEDLKHEIVEFYKLPLE 112

Query: 121 EKMRYQRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLE 178
           EKM+Y + P DAEGYG   +   D  LDWGDRFY +TNP+H+RK HL P+LPPSLR  LE
Sbjct: 113 EKMKY-KTPADAEGYGPSIIRSEDQKLDWGDRFYMLTNPIHRRKPHLLPQLPPSLRDNLE 171

Query: 179 SYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDGRQSVRMAYYPPCPTPGQVMGLAPHS 238
            Y+ + QKL+M LLG M KA+K+D +EMEE+F+DG+Q+VRM YYPPCP    VMG+APHS
Sbjct: 172 LYISDSQKLAMRLLGLMAKAMKLDKREMEELFDDGKQAVRMTYYPPCPQSEMVMGIAPHS 231

Query: 239 DASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATV 298
           DA+GITIL QVN VDGL+IKKDGVWIP ++LPDAL+VNVGDILEI+SNG+Y S+EHRATV
Sbjct: 232 DATGITILLQVNEVDGLQIKKDGVWIPVNVLPDALVVNVGDILEIVSNGMYTSIEHRATV 291

Query: 299 NSVKERISIAFFVSPKFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLE 358
           NS KERISIA F SPKF A++GPA  LI+P+N P+F R+GME++ + FFS KL+ KSYLE
Sbjct: 292 NSTKERISIAMFFSPKFSAEIGPAAGLITPQNLPVFKRIGMEKYYEDFFSRKLDGKSYLE 351

Query: 359 CMKI 362
            MKI
Sbjct: 352 HMKI 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225466131|ref|XP_002267405.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|296084216|emb|CBI24604.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740603|emb|CBI30785.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061029|ref|XP_002300323.1| predicted protein [Populus trichocarpa] gi|222847581|gb|EEE85128.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462494|ref|XP_002270514.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462488|ref|XP_002270288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740599|emb|CBI30781.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462482|ref|XP_002270036.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483581|ref|XP_003632980.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147768620|emb|CAN60619.1| hypothetical protein VITISV_010885 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.926 0.952 0.458 2e-81
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.926 0.957 0.466 4.1e-81
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.913 0.951 0.46 1e-77
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.923 0.955 0.435 5e-76
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.932 0.950 0.446 3.5e-75
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.932 0.942 0.380 7.9e-62
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.790 0.836 0.383 6.8e-56
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.864 0.900 0.363 2.9e-55
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.910 0.902 0.353 7.8e-55
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.913 0.962 0.354 2.6e-54
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 160/349 (45%), Positives = 230/349 (65%)

Query:    18 IPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNS 77
             +PSVQE M+K     TVP  ++R+DQ+     +        I +P ID++ L S    +S
Sbjct:    14 VPSVQE-MVKEKTITTVPPRYVRSDQDKTEVDDDFD---VKIEIPIIDMKRLCSSTTMDS 69

Query:    78 QLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGS 137
             +++ L   CKEWG FQLVNHGI SS L+K+K ++ +F+ LP+EEK ++ ++P + EG+G 
Sbjct:    70 EVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQ 129

Query:   138 --VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAM 195
               V   D  LDW D F+    P+  RK HLFP+LP   R TLE Y  E+Q ++  L+  M
Sbjct:   130 AFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKM 189

Query:   196 GKALKMDAKEMEEMFED--GRQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVD 253
              +AL++  +E+E++F+D    QS+RM YYPPCP P QV+GL PHSD+ G+T+L QVN V+
Sbjct:   190 ARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVE 249

Query:   254 GLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSP 313
             GL+IKKDG W+P   LP+A +VN+GD+LEI++NG YRS+EHR  VNS KER+SIA F + 
Sbjct:   250 GLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNV 309

Query:   314 KFDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKI 362
                 +VGPA SL+  +    F R+ M+E+    FS  L+ K+YL+ ++I
Sbjct:   310 GMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39224SRG1_ARATHNo assigned EC number0.44870.95920.9860yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.921
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-127
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 6e-92
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 8e-87
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 8e-74
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-69
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-68
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-65
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 5e-64
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-61
PLN02947374 PLN02947, PLN02947, oxidoreductase 5e-61
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-54
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 9e-52
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-51
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-49
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-48
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-46
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-45
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-45
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-40
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 6e-38
PLN02485329 PLN02485, PLN02485, oxidoreductase 6e-35
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-34
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-33
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-33
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 9e-33
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 1e-24
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-22
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-09
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  369 bits (948), Expect = e-127
 Identities = 163/348 (46%), Positives = 229/348 (65%), Gaps = 7/348 (2%)

Query: 18  IPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNS 77
           +PSVQE M+K     TVP  ++R+DQ+    +        S  +P ID++ L S    +S
Sbjct: 14  VPSVQE-MVKEKMITTVPPRYVRSDQDKTEIAVDSG---LSSEIPIIDMKRLCSSTAMDS 69

Query: 78  QLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGS 137
           +++ L   CKEWG FQLVNHGI SS L+K+K ++ +F+ LP+EEK +  ++PG+ EG+G 
Sbjct: 70  EVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQ 129

Query: 138 --VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSMELLGAM 195
             V   D  LDW D F+    P+  RK HLFP+LP   R TLE+Y  E++ ++  L   M
Sbjct: 130 AFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKM 189

Query: 196 GKALKMDAKEMEEMFEDGR-QSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVNGVDG 254
             AL++  +EME++F+D   QS+RM YYPPCP P QV+GL PHSDA G+TIL QVN V+G
Sbjct: 190 ASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEG 249

Query: 255 LEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPK 314
           L+IKKDG W+    LP+AL+VNVGDILEI++NG YRS+EHR  VNS KER+S+A F +  
Sbjct: 250 LQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTG 309

Query: 315 FDAQVGPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKI 362
              ++GPA SL+  +   LF  +  +E+    FS +L+ K+YL+ M+I
Sbjct: 310 MGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.93
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.38
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.84
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.82
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 90.15
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 88.13
TIGR02466201 conserved hypothetical protein. This family consis 84.66
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=2.6e-87  Score=653.43  Aligned_cols=343  Identities=47%  Similarity=0.868  Sum_probs=306.5

Q ss_pred             CCCCccHHHHHhc-CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCceeeCCCCCCCCchHHHHHHHHHHhHhccEEE
Q 017637           15 ESSIPSVQELMIK-NPDKLTVPQCFLRADQEPPNFSNGGTHHFPSIPVPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQ   93 (368)
Q Consensus        15 ~~~~~~v~~l~~~-~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~d~~~~~~~~l~~A~~~~GFF~   93 (368)
                      +.+++.||.|+.+ ++.  +||++||+|++++|.+... . .... +||||||+.+.+++..++++++|.+||++|||||
T Consensus        11 ~~~~~~~~~~~~~~~~~--~~p~~~v~p~~~~~~~~~~-~-~~~~-~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~   85 (357)
T PLN02216         11 SIIVPSVQEMVKEKMIT--TVPPRYVRSDQDKTEIAVD-S-GLSS-EIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQ   85 (357)
T ss_pred             CccchhHHHHHhcCCCC--CCCHhhCcCcccCCccccc-c-CcCC-CCCeEEChhccCCccHHHHHHHHHHHHHHCcEEE
Confidence            3456779999886 776  9999999999998754211 0 1112 7999999998765543446799999999999999


Q ss_pred             EecCCCCHHHHHHHHHHHHHHhcCCHHHHhhccCCCCCcccccc--cCCCCCccCcccccccccCCCccccCCCCCCCch
Q 017637           94 LVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPP  171 (368)
Q Consensus        94 v~nHGI~~~li~~~~~~~~~FF~lP~eeK~~~~~~~~~~~GY~~--~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~  171 (368)
                      |+||||+.++++++++++++||+||.|+|+++....+...||+.  .....++.||+|.|.+...|.....++.||+.|+
T Consensus        86 v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~  165 (357)
T PLN02216         86 LVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPL  165 (357)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchH
Confidence            99999999999999999999999999999999875566889976  2234567899999988766655567899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhccc-cceeeeeecCCCCCCCCccccccccCCceEEEEEecC
Q 017637          172 SLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFEDG-RQSVRMAYYPPCPTPGQVMGLAPHSDASGITILHQVN  250 (368)
Q Consensus       172 ~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~~~-~~~lrl~~YPp~~~~~~~~g~~~HtD~~~lTlL~q~~  250 (368)
                      +||+++++|+++|.+|+.+||++||++||+++++|.+.+... .+.||+||||||++++.++|+++|||+|+||||+|++
T Consensus       166 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~  245 (357)
T PLN02216        166 PFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVN  245 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecC
Confidence            999999999999999999999999999999999999988763 5789999999999999999999999999999999955


Q ss_pred             CCCCeEEEeCCeEEEcccCCCeEEEEeccccccccCCeecCccceeecCCCCCceEEEeeecCCCCceeecCCccCCCCC
Q 017637          251 GVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQVGPATSLISPEN  330 (368)
Q Consensus       251 ~v~GLQV~~~g~W~~V~p~~~~lvVniGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~v~~~~  330 (368)
                      +++||||+++|+|++|+|+||+|||||||+||+||||+|||++|||++++.++||||+||++|+.|++|+|+++|+++++
T Consensus       246 ~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~  325 (357)
T PLN02216        246 EVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQK  325 (357)
T ss_pred             CCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCC
Confidence            79999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             CCCCCcccHHHHHHHHHhccCCCCccccceec
Q 017637          331 PPLFIRVGMEEFVKTFFSHKLNEKSYLECMKI  362 (368)
Q Consensus       331 p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~  362 (368)
                      |++|++++|+||+..++.+.+.++..++.+||
T Consensus       326 p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        326 AALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            99999999999999999999999999998875

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-42
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-42
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-41
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-32
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-17
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-10
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 3e-09
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 4e-09
1e5h_A308 Delta-R307a Deacetoxycephalosporin C Synthase Compl 1e-07
1e5i_A306 Delta-R306 Deacetoxycephalosporin C Synthase Comple 1e-07
1unb_A311 Deacetoxycephalosporin C Synthase Complexed With 2- 1e-07
1w28_A331 Conformational Flexibility Of The C-Terminus With I 2e-07
1hjf_A311 Alteration Of The Co-Substrate Selectivity Of Deace 5e-07
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 162/285 (56%), Gaps = 13/285 (4%)
Query: 61  VPTIDLECLLSEEDTNSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLP 118
           VPTIDL+ + S+++   +  ++ L+    +WG+  L+NHGI + L+E++K    EF+ L 
Sbjct: 47  VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 119 IEEKMRY--QRKPGDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLR 174
           +EEK +Y   +  G  +GYGS     + G L+W D F+ +  P  +R   ++P+ P    
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 175 KTLESYVQELQKLSMELLGAMGKALKMDAKEMEEM---FEDGRQSVRMAYYPPCPTPGQV 231
           +    Y + L+ L+ ++  A+   L ++   +E+     E+    +++ YYP CP P   
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 226
Query: 232 MGLAPHSDASGIT-ILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYR 290
           +G+  H+D S +T ILH  N V GL++  +G W+ A  +PD++++++GD LEI+SNG Y+
Sbjct: 227 LGVEAHTDVSALTFILH--NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 291 SVEHRATVNSVKERISIAFFVSPKFDAQV-GPATSLISPENPPLF 334
           S+ HR  VN  K RIS A F  P  D  V  P   ++S E+P  F
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed With Succinate And Carbon Dioxide Length = 308 Back     alignment and structure
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed With Iron And 2-Oxoglutarate Length = 306 Back     alignment and structure
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With 2-Oxoglutarate And Ampicillin Length = 311 Back     alignment and structure
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With Implications For Substrate Binding And Catalysis In A New Crystal Form Of Deacetoxycephalosporin C Synthase Length = 331 Back     alignment and structure
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of Deacetoxycephalosporin C Synthase: The Role Of Arginine-258 Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-143
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-137
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-84
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-76
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 7e-73
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-72
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  409 bits (1053), Expect = e-143
 Identities = 105/359 (29%), Positives = 186/359 (51%), Gaps = 19/359 (5%)

Query: 18  IPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGGTHHF--PSIPVPTIDLECLLSEEDT 75
           +  V+ L        ++P+ ++R  +E  + ++            VPTIDL+ + S+++ 
Sbjct: 4   VERVESLAKSGII--SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61

Query: 76  NSQ--LDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRY--QRKPGD 131
             +  ++ L+    +WG+  L+NHGI + L+E++K    EF+ L +EEK +Y   +  G 
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121

Query: 132 AEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESYVQELQKLSM 189
            +GYGS     + G L+W D F+ +  P  +R   ++P+ P    +    Y + L+ L+ 
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181

Query: 190 ELLGAMGKALKMDAKEMEEMF---EDGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITIL 246
           ++  A+   L ++   +E+     E+    +++ YYP CP P   +G+  H+D S +T +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241

Query: 247 HQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERIS 306
              N V GL++  +G W+ A  +PD++++++GD LEI+SNG Y+S+ HR  VN  K RIS
Sbjct: 242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300

Query: 307 IAFFVSPKFDAQV-GPATSLISPENPPLFIRVGMEEFVKTFFSHKLNEKSYLECMKIDN 364
            A F  P  D  V  P   ++S E+P  F      + ++    HKL  K   E +   N
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEELVSEKN 355
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.5
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 94.04
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.64
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.22
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 83.97
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 81.67
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 81.38
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.24
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-85  Score=638.38  Aligned_cols=336  Identities=29%  Similarity=0.592  Sum_probs=298.1

Q ss_pred             CCccHHHHHhcCCCCCCCCCCccCCCCCCCCCCC---CCCCCCCCCCCceeeCCCCCCCCch--HHHHHHHHHHhHhccE
Q 017637           17 SIPSVQELMIKNPDKLTVPQCFLRADQEPPNFSN---GGTHHFPSIPVPTIDLECLLSEEDT--NSQLDNLRAICKEWGI   91 (368)
Q Consensus        17 ~~~~v~~l~~~~~~~~~vp~~~~~~~~~~~~~~~---~~~~~~~~~~iPvIDls~l~~~d~~--~~~~~~l~~A~~~~GF   91 (368)
                      ++++||+|+++|+.  +||++|++|.++++....   ........ +||||||+.+.+++..  .+++++|.+||++|||
T Consensus         3 ~~~~v~~l~~~~~~--~vP~~~~~p~~~~~~~~~~~~~~~~~~~~-~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GF   79 (356)
T 1gp6_A            3 AVERVESLAKSGII--SIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKIRENCIEELKKASLDWGV   79 (356)
T ss_dssp             CCCCHHHHHHTTCS--SCCGGGSCCHHHHTTCCCHHHHHHCCCSC-CCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSE
T ss_pred             CcccHHHHHhcCCC--CCCHHhcCCchhcccccccccccccccCC-CCCEEEchhccCCChHHHHHHHHHHHHHHHhCCE
Confidence            56789999999987  999999999888875321   00000013 6999999998765542  2356999999999999


Q ss_pred             EEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhccCCC--CCcccccc--cCCCCCccCcccccccccCCCccccCCCCC
Q 017637           92 FQLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKP--GDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFP  167 (368)
Q Consensus        92 F~v~nHGI~~~li~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~--~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP  167 (368)
                      |||+||||+.++++++++.+++||+||.|+|+++....  ..++||+.  .....+..||+|.|++...|.....+|.||
T Consensus        80 F~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP  159 (356)
T 1gp6_A           80 MHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP  159 (356)
T ss_dssp             EEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCC
Confidence            99999999999999999999999999999999998754  36889987  223456789999999887665445678999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhc---cccceeeeeecCCCCCCCCccccccccCCceEE
Q 017637          168 ELPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFE---DGRQSVRMAYYPPCPTPGQVMGLAPHSDASGIT  244 (368)
Q Consensus       168 ~~~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lrl~~YPp~~~~~~~~g~~~HtD~~~lT  244 (368)
                      +.+++||+++++|+++|.+|+.+||++|+++||+++++|.+.+.   ...+.||+||||||++++..+|+++|||+|+||
T Consensus       160 ~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lT  239 (356)
T 1gp6_A          160 KTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT  239 (356)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEE
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEE
Confidence            99999999999999999999999999999999999999999987   467889999999999999999999999999999


Q ss_pred             EEEecCCCCCeEEEeCCeEEEcccCCCeEEEEeccccccccCCeecCccceeecCCCCCceEEEeeecCCCCc-eeecCC
Q 017637          245 ILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDA-QVGPAT  323 (368)
Q Consensus       245 lL~q~~~v~GLQV~~~g~W~~V~p~~~~lvVniGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~pl~  323 (368)
                      ||+| |+++||||+++|+|++|+|+||+|||||||+||+||||+|||++|||++|+.++|||++||++|+.|+ +|+|++
T Consensus       240 lL~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~  318 (356)
T 1gp6_A          240 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP  318 (356)
T ss_dssp             EEEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             EEEE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCCh
Confidence            9999 67999999999999999999999999999999999999999999999999889999999999999999 999999


Q ss_pred             ccCCCCCCCCCCcccHHHHHHHHHhccCCCCcc
Q 017637          324 SLISPENPPLFIRVGMEEFVKTFFSHKLNEKSY  356 (368)
Q Consensus       324 ~~v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~  356 (368)
                      +++++++|++|+++||+||++.+++++++|+..
T Consensus       319 ~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             hhcCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            999999999999999999999999888777643
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-62
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 5e-62
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-53
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-38
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  199 bits (506), Expect = 4e-62
 Identities = 87/308 (28%), Positives = 156/308 (50%), Gaps = 13/308 (4%)

Query: 61  VPTIDLECLLSEEDTNSQLDNLRAICKEWGIFQLVNHGIGSSLLEKLKHDMVEFYKLPIE 120
            P I L+ +    +  + ++ ++  C+ WG F+LVNHGI   +++ ++      YK  +E
Sbjct: 3   FPIISLDKVNGV-ERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCME 61

Query: 121 EKMRYQRKPGDAEGYGSVAGSDGILDWGDRFYTVTNPLHQRKSHLFPELPPSLRKTLESY 180
           ++ +        EG  +       +DW   F+     L        P+L    R+ +  +
Sbjct: 62  QRFKELVASKALEGVQA---EVTDMDWESTFFL--KHLPISNISEVPDLDEEYREVMRDF 116

Query: 181 VQELQKLSMELLGAMGKALKMDAKEMEEMF---EDGRQSVRMAYYPPCPTPGQVMGLAPH 237
            + L+KL+ ELL  + + L ++   ++  F   +      +++ YPPCP P  + GL  H
Sbjct: 117 AKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 176

Query: 238 SDASGITILHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRAT 297
           +DA GI +L Q + V GL++ KDG WI    +  +++VN+GD LE+++NG Y+SV HR  
Sbjct: 177 TDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVI 236

Query: 298 VNSVKERISIAFFVSPKFDAQVGPATSLI---SPENPPLFIRVGMEEFVKTFFSHKLNEK 354
                 R+S+A F +P  DA + PA +L+   + EN  ++ +   ++++K +   K   K
Sbjct: 237 AQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAK 296

Query: 355 SY-LECMK 361
               E MK
Sbjct: 297 EPRFEAMK 304
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 90.45
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 86.69
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6e-80  Score=598.19  Aligned_cols=327  Identities=30%  Similarity=0.596  Sum_probs=285.5

Q ss_pred             CccHHHHHhcCCCCCCCCCCccCCCCCCCCCCCCC---CCCCCCCCCceeeCCCCCCCCchH--HHHHHHHHHhHhccEE
Q 017637           18 IPSVQELMIKNPDKLTVPQCFLRADQEPPNFSNGG---THHFPSIPVPTIDLECLLSEEDTN--SQLDNLRAICKEWGIF   92 (368)
Q Consensus        18 ~~~v~~l~~~~~~~~~vp~~~~~~~~~~~~~~~~~---~~~~~~~~iPvIDls~l~~~d~~~--~~~~~l~~A~~~~GFF   92 (368)
                      +..||+|+++|+.  +||++||+|+.+++.+....   ...... +||||||+.+.+++...  +.+++|.+||++||||
T Consensus         3 ~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf   79 (349)
T d1gp6a_           3 VERVESLAKSGII--SIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVM   79 (349)
T ss_dssp             CCCHHHHHHTTCS--SCCGGGSCCHHHHTTCCCHHHHHHCCCSC-CCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEE
T ss_pred             CcchHHHHhCCCc--cCCHhhcCChhhcCCCCccccccccCCCC-CcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEE
Confidence            5679999999998  99999999999988752100   001223 89999999998776532  3569999999999999


Q ss_pred             EEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhccCCC--CCcccccc--cCCCCCccCcccccccccCCCccccCCCCCC
Q 017637           93 QLVNHGIGSSLLEKLKHDMVEFYKLPIEEKMRYQRKP--GDAEGYGS--VAGSDGILDWGDRFYTVTNPLHQRKSHLFPE  168 (368)
Q Consensus        93 ~v~nHGI~~~li~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~--~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~  168 (368)
                      ||+||||+.++++++++++++||+||.|+|++|....  +.+.||+.  ........+|.+.+.....+.....++.||+
T Consensus        80 ~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~  159 (349)
T d1gp6a_          80 HLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  159 (349)
T ss_dssp             EEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccc
Confidence            9999999999999999999999999999999998643  34555555  3334556777776555444555566799999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhc---cccceeeeeecCCCCCCCCccccccccCCceEEE
Q 017637          169 LPPSLRKTLESYVQELQKLSMELLGAMGKALKMDAKEMEEMFE---DGRQSVRMAYYPPCPTPGQVMGLAPHSDASGITI  245 (368)
Q Consensus       169 ~~~~fr~~~~~y~~~~~~l~~~ll~~ls~~Lgl~~~~~~~~~~---~~~~~lrl~~YPp~~~~~~~~g~~~HtD~~~lTl  245 (368)
                      .++.|++.+++|+++|.+++.+|+++++++||+++++|.+.+.   ...+.||++|||||+.+...+|+++|||+|+|||
T Consensus       160 ~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTl  239 (349)
T d1gp6a_         160 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  239 (349)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEE
Confidence            9999999999999999999999999999999999999988764   3356899999999999989999999999999999


Q ss_pred             EEecCCCCCeEEEeCCeEEEcccCCCeEEEEeccccccccCCeecCccceeecCCCCCceEEEeeecCCCCcee-ecCCc
Q 017637          246 LHQVNGVDGLEIKKDGVWIPAHILPDALLVNVGDILEIMSNGVYRSVEHRATVNSVKERISIAFFVSPKFDAQV-GPATS  324 (368)
Q Consensus       246 L~q~~~v~GLQV~~~g~W~~V~p~~~~lvVniGD~L~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~pl~~  324 (368)
                      |+| +.++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.|++++||||+||++|+.|++| +|+|+
T Consensus       240 L~q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~  318 (349)
T d1gp6a_         240 ILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPE  318 (349)
T ss_dssp             EEE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGG
T ss_pred             Eec-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHH
Confidence            999 7899999999999999999999999999999999999999999999999999999999999999999865 89999


Q ss_pred             cCCCCCCCCCCcccHHHHHHHHHh
Q 017637          325 LISPENPPLFIRVGMEEFVKTFFS  348 (368)
Q Consensus       325 ~v~~~~p~~y~~~~~~ey~~~~~~  348 (368)
                      |+++++|++|+|||++||++.++.
T Consensus       319 ~v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         319 MVSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCccHHHHHHHHHh
Confidence            999999999999999999998774
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure