Citrus Sinensis ID: 017642

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGEESIFIF
Secondary Structure (PSIPRED)
ccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEccEEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccEEEEEEccccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHEccccccccEEHHHHHHcccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccHcEEEEEccccccccEEEEccccccEEEEEccccccEEEEEEcccccccEEEccccHHHHEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
maalsaysspwpeptpdpnpnpnpnsntscgvssedqtDQLQSlesfssmpqdepdsfspsipesnpnyqmplpspaestsssppptllhisfnqdhgcfaagtdhgfriyncdpfrEIFRRDFERGGGIGVVEMLFRCNILalvgggpdpqyplnkvmiwddhqsrcigeLSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIanpkglcavsqgVGSLVLvcpglqkgqvRVEHYASKRTKFIMAHDSRIACFAltqdgqllatsstkGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLavssdkgtVHVFNLkvnsgsarseprstsdptlptsslsfikgeesifif
Flexible Loop (DISEMBL)
MAAlsaysspwpeptpdpnpnpnPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGElsfrsevrsvklrrdriivvlEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLatsstkgtlVRIFNtldgtllqEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKvnsgsarseprstsdptlptsslsfikgeesifif
Low Complexity Region (SEG)
MAALSAYsspwpeptpdpnpnpnpnsntsCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMplpspaestsssppptllHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRstsdptlptsslsFIKGEESIFIF
Disordered region (IsUnstruct)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK***********************************
Disordered Region (DISOPRED)
***************************************************************************************LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN************************LSFIKGEESIFIF
Disordered Region (DISEMBL)
******************NPNPNPNSN**************QSLE***************SIPESNPNYQMP************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV*****************PTSSLSFIKGEESIFIF
Disordered Region (DISPRO)
*AALSAYSSPWPEPTPD*******************************************************************PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV**********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGEESIFIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q640T2	344	WD repeat domain phosphoi	yes	no	0.706	0.755	0.474	1e-65
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.706	0.755	0.470	3e-65
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.706	0.755	0.474	3e-65
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.706	0.755	0.474	3e-65
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.706	0.755	0.470	8e-65
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.706	0.755	0.470	4e-64
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.706	0.755	0.463	9e-64
Q9Y484	360	WD repeat domain phosphoi	no	no	0.682	0.697	0.412	2e-50
Q91VM3	360	WD repeat domain phosphoi	no	no	0.682	0.697	0.405	5e-50
Q6DCV0	355	WD repeat domain phosphoi	N/A	no	0.682	0.707	0.402	5e-49

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  250 bits (639), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 175/272 (64%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 175/272 (64%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   A+  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLANTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Gallus gallus (taxid: 9031)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 175/272 (64%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Mus musculus (taxid: 10090)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 175/272 (64%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Homo sapiens (taxid: 9606)

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  247 bits (631), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 174/272 (63%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +  VEMLFRCN LALVGG
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VSYVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Xenopus laevis (taxid: 8355)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  245 bits (625), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 128/272 (47%), Positives = 174/272 (63%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           AL   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY +  + +A  + VSSD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Pongo abelii (taxid: 9601)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  244 bits (622), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 126/272 (46%), Positives = 171/272 (62%), Gaps = 12/272 (4%)

Query: 88  LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147
           LL+  FNQDHGCFA G ++GFR+YN DP +E  + +F  GG +G VEMLFRCN LALVGG
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGG-VGHVEMLFRCNYLALVGG 71

Query: 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKL 206
           G  P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   
Sbjct: 72  GKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQ 131

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACF 264
           LH  ET  NPKGLC +     + +L  P    G V++   A+  K    I AH+  + C 
Sbjct: 132 LHVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLANTEKPPVDIPAHEGVLCCI 191

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
            L   G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD 
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDH 251

Query: 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356
           GTVH+F        A  +P+     +L ++S 
Sbjct: 252 GTVHIF--------AAEDPKRNKQSSLASASF 275

Danio rerio (taxid: 7955)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/264 (41%), Positives = 159/264 (60%), Gaps = 13/264 (4%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVGGG  
Sbjct: 12  LRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGGGSS 71

Query: 151 PQYPLNKVMIWDD------HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204
           P++    V+IWDD       + + + E +F   V SV++R D+I++VL+ +I+VY+F D 
Sbjct: 72  PKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSFPDN 131

Query: 205 -KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IMAH 257
            + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         I AH
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAH 191

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
            S IAC +L Q G ++A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +
Sbjct: 192 QSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSF 251

Query: 318 LAVSSDKGTVHVFNLKVNSGSARS 341
           L  SSDKGTVH+F LK    + RS
Sbjct: 252 LCASSDKGTVHIFALKDTRLNRRS 275

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 158/264 (59%), Gaps = 13/264 (4%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RIYN +P  E    D E+ G +G+VEML R N+LALVGGG  
Sbjct: 12  LHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSS 71

Query: 151 PQYPLNKVMIWDD------HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204
           P++    V+IWDD       + + + E +F   V +V++R D+I++VL  +I+VY+F D 
Sbjct: 72  PKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDS 131

Query: 205 -KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IMAH 257
            + L + +T  NPKGLC +   +   +LV PG + G +++   AS +         I AH
Sbjct: 132 PRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTINAH 191

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
            S +AC +L Q G ++A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +
Sbjct: 192 QSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHDSSF 251

Query: 318 LAVSSDKGTVHVFNLKVNSGSARS 341
           L  SSDKGTVH+F LK    + RS
Sbjct: 252 LCASSDKGTVHIFALKDTRLNRRS 275

Mus musculus (taxid: 10090)

>sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/261 (40%), Positives = 156/261 (59%), Gaps = 10/261 (3%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
           + FNQD  CF    + G RI+N +P  E    D E+ G +G VEML RCN+LALVGGG +
Sbjct: 10  LRFNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSN 69

Query: 151 PQYPLNKVMIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KL 206
           P++    V+IWDD    + + + E +F   V SV+LR D+I++ L+ +I+VY+F D    
Sbjct: 70  PKFSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTK 129

Query: 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSR 260
           L + +T  NPKGLC +   +   +L+ PG + G +++    + +         I AH S 
Sbjct: 130 LFEFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSE 189

Query: 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
           + C A+ Q G L+A++S KGTL+R+F+T     L E+RRG D A +Y + FS ++ +L  
Sbjct: 190 LGCLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLYCINFSHDSSFLCS 249

Query: 321 SSDKGTVHVFNLKVNSGSARS 341
           SSDKGTVH+F LK    + RS
Sbjct: 250 SSDKGTVHIFALKDTKLNRRS 270

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
225436703	439	PREDICTED: WD repeat domain phosphoinosi	0.956	0.801	0.718	1e-145
240255692	396	transducin/WD40 domain-containing protei	0.872	0.810	0.759	1e-145
240255690	425	transducin/WD40 domain-containing protei	0.872	0.755	0.759	1e-144
7362757	432	putative protein [Arabidopsis thaliana]	0.872	0.743	0.733	1e-141
297821186	432	AT3g62770/F26K9_200 [Arabidopsis lyrata	0.812	0.692	0.783	1e-140
255582144	447	WD-repeat protein, putative [Ricinus com	0.861	0.709	0.794	1e-139
147775635	428	hypothetical protein VITISV_032850 [Viti	0.926	0.796	0.697	1e-137
225450815	425	PREDICTED: WD repeat domain phosphoinosi	0.809	0.701	0.8	1e-136
449436529	420	PREDICTED: WD repeat domain phosphoinosi	0.937	0.821	0.698	1e-136
297824875	413	predicted protein [Arabidopsis lyrata su	0.809	0.721	0.796	1e-135

>gi|225436703|ref|XP_002263976.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/377 (71%), Positives = 300/377 (79%), Gaps = 25/377 (6%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSD 348
           DGT LQEVRRGADRAE+YS+AFSS AQWLAVSSDKGTVHVF LKVNSGS    +    SD
Sbjct: 292 DGTRLQEVRRGADRAEVYSMAFSSTAQWLAVSSDKGTVHVFGLKVNSGSLGNDKSHGASD 351

Query: 349 PTLPTS----SLSFIKG 361
             L  +    SLSFIKG
Sbjct: 352 ANLAVASSGLSLSFIKG 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255692|ref|NP_001030918.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332646869|gb|AEE80390.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/345 (75%), Positives = 287/345 (83%), Gaps = 24/345 (6%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338
            QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS
Sbjct: 284 RQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGS 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255690|ref|NP_567132.4| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|16323362|gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] gi|332646868|gb|AEE80389.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/345 (75%), Positives = 287/345 (83%), Gaps = 24/345 (6%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338
            QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS
Sbjct: 284 RQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGS 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7362757|emb|CAB83127.1| putative protein [Arabidopsis thaliana]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/353 (73%), Positives = 285/353 (80%), Gaps = 32/353 (9%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGV-----SSEDQTDQLQSLESFSSMP--QD 53
           MA +S  SS WP      NPNPNP+S ++        S  D+ D+  SL+SFSSM    D
Sbjct: 1   MATVS--SSSWP------NPNPNPDSTSASDSDSTFPSHRDRVDEPDSLDSFSSMSLNSD 52

Query: 54  EPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNC 113
           EP+  S   P S P   +P+          PPP++LH+SFNQDH CFA GTD GFRI NC
Sbjct: 53  EPNQTSNQSPLSPPTPNLPV---------MPPPSVLHLSFNQDHACFAVGTDRGFRILNC 103

Query: 114 DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173
           DPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ RCIGELS
Sbjct: 104 DPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQGRCIGELS 163

Query: 174 FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233
           FRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIETIANPKGLCAVSQGVGS+VLVC
Sbjct: 164 FRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIETIANPKGLCAVSQGVGSMVLVC 223

Query: 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293
           PGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG LLAT+S+KGTLVRIFNT+DGTL
Sbjct: 224 PGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTL 283

Query: 294 LQEV--------RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338
            QE         + GADRAEIYSLAFSSNAQWLAVSSDKGTVHVF LKVNSGS
Sbjct: 284 RQESGTSEDEIGKEGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGS 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821186|ref|XP_002878476.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata] gi|297324314|gb|EFH54735.1| AT3g62770/F26K9_200 [Arabidopsis lyrata subsp. lyrata]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/314 (78%), Positives = 269/314 (85%), Gaps = 15/314 (4%)

Query: 33  SSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHIS 92
           S  D+ D+  SL+SFSSM      S +   P  N N Q P+  P  +   +PPP++LH+S
Sbjct: 30  SHRDRGDETDSLDSFSSM------SLNSDEPNQNSN-QSPISPPTPNLPVTPPPSVLHLS 82

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ
Sbjct: 83  FNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQ 142

Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           YP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQIET
Sbjct: 143 YPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQIET 202

Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL 272
           IANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG L
Sbjct: 203 IANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHL 262

Query: 273 LATSSTKGTLVRIFNTLDGTLLQE--------VRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           LAT+S+KGTLVR+FNT+DGTL QE        VRRGADRAEIYSLAFSSNAQWLAVSSDK
Sbjct: 263 LATASSKGTLVRVFNTVDGTLRQESHRDVTLQVRRGADRAEIYSLAFSSNAQWLAVSSDK 322

Query: 325 GTVHVFNLKVNSGS 338
           GTVHVF LKVNSGS
Sbjct: 323 GTVHVFGLKVNSGS 336

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582144|ref|XP_002531866.1| WD-repeat protein, putative [Ricinus communis] gi|223528474|gb|EEF30503.1| WD-repeat protein, putative [Ricinus communis]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/336 (79%), Positives = 286/336 (85%), Gaps = 19/336 (5%)

Query: 40  QLQSLESFSS-MPQDE--PDSFSPSIPESNPNYQMPLPSPAESTSSSPPP----TLLHIS 92
           Q QS ++ SS MPQD   PD   P     NPNY       A+S+++SPP     +LLH+S
Sbjct: 46  QSQSYDTLSSIMPQDHCIPDHSDP-----NPNYHHHARPAADSSTTSPPSSPPISLLHLS 100

Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPD 150
           FNQD GCFAAGTDHGFRIYNCDPFREIFRRDF+RGGG G  VVEMLFRCNILALVGGG D
Sbjct: 101 FNQDFGCFAAGTDHGFRIYNCDPFREIFRRDFDRGGGGGIGVVEMLFRCNILALVGGGSD 160

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
           PQYP NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI
Sbjct: 161 PQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 220

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           ETIANPKGLCAVS G GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG
Sbjct: 221 ETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 280

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
           QLLAT+STKGTLVR+FNT DG+LLQEVRRGADRAEIYS+AFSS AQWLAVSSDKGTVHVF
Sbjct: 281 QLLATASTKGTLVRVFNTADGSLLQEVRRGADRAEIYSVAFSSTAQWLAVSSDKGTVHVF 340

Query: 331 NLKVNSGSARSE-PRSTSDPTL----PTSSLSFIKG 361
           +LK   GS  ++  R+T+DP +    PTSSLSF KG
Sbjct: 341 SLKTTPGSLGTDRSRNTTDPNVGVSSPTSSLSFFKG 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775635|emb|CAN67189.1| hypothetical protein VITISV_032850 [Vitis vinifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/377 (69%), Positives = 290/377 (76%), Gaps = 36/377 (9%)

Query: 1   MAALSAYSSP-WPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFS 59
           MA L+A SS  WP      NPNP+PNS     +S +   +Q  +++  ++M Q +    S
Sbjct: 1   MATLTAVSSASWP------NPNPSPNSTF---LSQQSHPEQYPAVQDPTAMRQHQGTGLS 51

Query: 60  PSIPE-----SNPNY---QMPLPSPAE--STSSSPPPTLLHISFNQDHGCFAAGTDHGFR 109
               E     S+PN+   Q P  +  E  S S+S  P+LLHISFNQDHGCFAAGTD+GFR
Sbjct: 52  GDGGEDESFSSSPNHHTVQSPNSNLREVVSYSTSSIPSLLHISFNQDHGCFAAGTDNGFR 111

Query: 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169
           IYNCDPFREIFRRDF+RGGGIGVVEMLFRCNILALVGGGP+PQYPLNKVMIWDDHQSRCI
Sbjct: 112 IYNCDPFREIFRRDFDRGGGIGVVEMLFRCNILALVGGGPEPQYPLNKVMIWDDHQSRCI 171

Query: 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229
           GELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+GLCAVSQ   SL
Sbjct: 172 GELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRGLCAVSQLTASL 231

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           VLVCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLAT+STKGTLVRIFNT 
Sbjct: 232 VLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATASTKGTLVRIFNTS 291

Query: 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSD 348
           DGT LQEVRRGADRAE           WLAVSSDKGTVHVF LKVNSGS    +    SD
Sbjct: 292 DGTRLQEVRRGADRAE-----------WLAVSSDKGTVHVFGLKVNSGSLGNDKSHGASD 340

Query: 349 PTLPTS----SLSFIKG 361
             L  +    SLSFIKG
Sbjct: 341 ANLAVASSGLSLSFIKG 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450815|ref|XP_002283982.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/310 (80%), Positives = 269/310 (86%), Gaps = 12/310 (3%)

Query: 62  IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR 121
           +PES  N    +P P+   +  P PTLLH+SFNQDHGCF+AGTDHGFRIYNCDPFREIFR
Sbjct: 47  LPESEYN-DDSVP-PSADPTRFPAPTLLHLSFNQDHGCFSAGTDHGFRIYNCDPFREIFR 104

Query: 122 RDF-----ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
           RDF       G GIGVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQ+RCIGELSFRS
Sbjct: 105 RDFCGDDGGSGTGIGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQTRCIGELSFRS 164

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           EV+SV+LRRDRI+ +L QKIFVYNFADLKLLHQIETIANPKGLC VSQ  GS+VLVCPGL
Sbjct: 165 EVKSVRLRRDRIVAILLQKIFVYNFADLKLLHQIETIANPKGLCEVSQLSGSMVLVCPGL 224

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
            KGQVRVEHY SKRTKFIMAHDSRIACFALTQDG+LLATSS+KGTLVRIFNTLDGTLLQE
Sbjct: 225 LKGQVRVEHYNSKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRIFNTLDGTLLQE 284

Query: 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE-PRSTSDPTL---- 351
           VRRGADRAEIYS+AFSS+AQWLAVSSDKGTVHVF+LKV SGS  S+  RS+S+P L    
Sbjct: 285 VRRGADRAEIYSVAFSSSAQWLAVSSDKGTVHVFSLKVESGSLGSDRSRSSSEPNLSVPS 344

Query: 352 PTSSLSFIKG 361
             SSLSF+KG
Sbjct: 345 AVSSLSFMKG 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436529|ref|XP_004136045.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus] gi|449533312|ref|XP_004173620.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Cucumis sativus]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/365 (69%), Positives = 276/365 (75%), Gaps = 20/365 (5%)

Query: 1   MAALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSP 60
           M  LSA+ SP        +      +            D   S E F           S 
Sbjct: 1   METLSAFPSPPWPNPNPNSNPSPNPNPNPNPNPPSAVADS-SSSERFD----------SD 49

Query: 61  SIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF 120
           S+   +P    P   P  S      P+LLH+SFNQDHGCFAAGTD GFRIYNCDPFREIF
Sbjct: 50  SVSSVDPTGLSPAVEPPASQ-----PSLLHLSFNQDHGCFAAGTDRGFRIYNCDPFREIF 104

Query: 121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS 180
           RRDF+RGGG+GVVEMLFRCNILALVGGGPDPQYP NKVMIWDDHQSRCIGELSFRS VR 
Sbjct: 105 RRDFDRGGGVGVVEMLFRCNILALVGGGPDPQYPPNKVMIWDDHQSRCIGELSFRSAVRG 164

Query: 181 VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
           V+L+RDRIIV+LEQK+FVYNFADLKLLHQIETIANPKGLCAVSQ   SLVLVCPGLQKGQ
Sbjct: 165 VRLQRDRIIVILEQKVFVYNFADLKLLHQIETIANPKGLCAVSQLSTSLVLVCPGLQKGQ 224

Query: 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300
           VRVEHYAS+RTKFIMAHDSRIACFALT +GQLLAT+STKGTLVRIFNT DG LLQEVRRG
Sbjct: 225 VRVEHYASRRTKFIMAHDSRIACFALTTNGQLLATASTKGTLVRIFNTFDGNLLQEVRRG 284

Query: 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT----SSL 356
           ADRAEIYSLAFSS AQWLAVSSDKGTVHVF+LKVNSGS  ++    +D +L      SS 
Sbjct: 285 ADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSGSLGNDMSHQNDSSLSVAPSGSSF 344

Query: 357 SFIKG 361
           SFIKG
Sbjct: 345 SFIKG 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824875|ref|XP_002880320.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297326159|gb|EFH56579.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/300 (79%), Positives = 262/300 (87%), Gaps = 2/300 (0%)

Query: 57  SFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF 116
           SFS + P S+ +    L S   S+ ++P P+LLHISFNQD+GCFA GTD GFRI+NCDPF
Sbjct: 22  SFSSTAPHSDDDSDRQLDSN-PSSPATPLPSLLHISFNQDYGCFAVGTDCGFRIFNCDPF 80

Query: 117 REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS 176
            EIFRRDF+RGGG+ VVEMLFRCNILALVGGGPDPQ+P  KVMIWDDHQ+RCIGELSFRS
Sbjct: 81  SEIFRRDFDRGGGVAVVEMLFRCNILALVGGGPDPQHPPCKVMIWDDHQNRCIGELSFRS 140

Query: 177 EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236
           +VRS++LRRDRIIVVLEQKIFVYNFADLKL+HQIETIANPKGLCAVSQG GSLVLVCPGL
Sbjct: 141 DVRSLRLRRDRIIVVLEQKIFVYNFADLKLMHQIETIANPKGLCAVSQGAGSLVLVCPGL 200

Query: 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296
           QKGQVRVEHYASKRTKFIMAHDSRIACFALTQD  LLAT+S KGTL+R+FNT DGTLLQE
Sbjct: 201 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDAHLLATASFKGTLLRVFNTADGTLLQE 260

Query: 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS-ARSEPRSTSDPTLPTSS 355
           VRRGADRAEIYSLAFSS+AQWLAVSSDKGTVHVF LK+NSGS  +   R T    L  SS
Sbjct: 261 VRRGADRAEIYSLAFSSDAQWLAVSSDKGTVHVFGLKINSGSQVKDTSRRTHPEWLAVSS 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.807	0.698	0.788	1.3e-125
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.673	0.542	0.797	4.4e-107
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.660	0.621	0.692	2.1e-93
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.687	0.606	0.675	1.5e-92
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.660	0.618	0.692	3.9e-92
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.673	0.708	0.569	1.9e-76
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.663	0.638	0.540	8.6e-72
UNIPROTKB|Q22UW9	351	TTHERM_00577340 "WD repeat dom	0.657	0.689	0.524	5.6e-68
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.654	0.644	0.532	4.1e-65
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.652	0.697	0.504	1.9e-60

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 243/308 (78%), Positives = 261/308 (84%)

Query:    33 SSEDQTDQLQSLESFSSMP--QDEPDSFSPSIPESNPNYQMXXXXXXXXXXXXXXXXXXH 90
             S  D+ D+  SL+SFSSM    DEP+  S   P S P   +                  H
Sbjct:    30 SHRDRVDEPDSLDSFSSMSLNSDEPNQTSNQSPLSPPTPNLPVMPPPSVL---------H 80

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +SFNQDH CFA GTD GFRI NCDPFREIFRRDF+RGGG+ VVEMLFRCNILALVGGGPD
Sbjct:    81 LSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGGGPD 140

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
             PQYP NKVMIWDDHQ RCIGELSFRS+VRSV+LRRDRIIVVLEQKIFVYNF+DLKL+HQI
Sbjct:   141 PQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLMHQI 200

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ETIANPKGLCAVSQGVGS+VLVCPGLQKGQVR+EHYASKRTKF+MAHDSRIACFALTQDG
Sbjct:   201 ETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDG 260

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S+KGTLVRIFNT+DGTL QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF
Sbjct:   261 HLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 320

Query:   331 NLKVNSGS 338
              LKVNSGS
Sbjct:   321 GLKVNSGS 328

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 205/257 (79%), Positives = 223/257 (86%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---------GGGIGVVEMLFRCN 140
             HISFNQD+GCFAAGT  GFRIYNCDPFREIFRRD            GGGIGVVEMLFRCN
Sbjct:   101 HISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLFRCN 160

Query:   141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYN 200
             ILALVGGG  P YP NKVMIWDDHQSRCIGELSFRS VR V+LRRDRIIVVLE KIFVYN
Sbjct:   161 ILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYN 220

Query:   201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR 260
             FADLKL+HQIET  NPKGLCAVSQ  GS+VLVCPG QKGQVRVEHY +++TKFI AH SR
Sbjct:   221 FADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHTSR 280

Query:   261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
             +ACFAL+QDG+L+AT+STKGTLVRI+N  +G LLQEVRRGADRAEIYSLAFS+N Q+LAV
Sbjct:   281 VACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQYLAV 340

Query:   321 SSDKGTVHVFNLKVNSG 337
             SSDKGT+HVFNLK+N G
Sbjct:   341 SSDKGTIHVFNLKINVG 357

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 169/244 (69%), Positives = 204/244 (83%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    39 VSWNQDYSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 97

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP NKV+IWDDHQ RCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    98 SQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 157

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             E +ANP+GLC +S  + + VL CPG+++G+VRVEH+     + I AHDS IAC  LT DG
Sbjct:   158 ENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDG 217

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+STKGTL+RIFNT+DGT LQEVRRG DRA+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   218 LLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIF 277

Query:   331 NLKV 334
             +L+V
Sbjct:   278 SLRV 281

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 173/256 (67%), Positives = 209/256 (81%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD GCFAAGT +GFRI+NCDPF+E FRRD  + GG G+VEMLFRCNILALVGGG +
Sbjct:    50 VSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDL-KSGGFGIVEMLFRCNILALVGGGSN 108

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               YP NKVMIWDDH+S CIGE +FRS+VR+VKL +D I++VLE+KI+VYNF DLKLLHQI
Sbjct:   109 AHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQI 168

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET +NPKGLC +S    + VL CPG+ +G VRVEH+  K T+ I AHDS I+C ALT DG
Sbjct:   169 ETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDG 228

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S KGTL+RIFNT+DGT LQEVRRG D+A+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   229 LLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIF 288

Query:   331 NLKVN-SGS-ARSEPR 344
             +L+V  +G  A +E R
Sbjct:   289 SLRVRVAGEDASNEQR 304

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 169/244 (69%), Positives = 201/244 (82%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             + +NQD  CFAAGT HGFRIYNC+PF+E FRR+  + GG  +VEMLFR NILALVGGGP+
Sbjct:    35 VCWNQDSSCFAAGTSHGFRIYNCEPFKETFRREL-KDGGFKIVEMLFRSNILALVGGGPN 93

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              QYP +KV+IWDDHQSRCI E +FRSE+R+VKLRRDRI+VVLE KI+VYNF DL+LLHQI
Sbjct:    94 SQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQI 153

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
             ET ANP+GLC +S    + VL CPGL +G++RVEH+     + I AHDS IAC  LT DG
Sbjct:   154 ETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDG 213

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+STKGTL+RIFNT+DGT LQEVRRG DRA+IYS+A S N QWLAVSSDKGTVH+F
Sbjct:   214 LLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIF 273

Query:   331 NLKV 334
             +L+V
Sbjct:   274 SLRV 277

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 143/251 (56%), Positives = 196/251 (78%)

Query:    92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151
             +FNQD+ CFA GT+ GF I++CDPF+E F R F+  GG+G+VEMLFRCNILA+VGGG  P
Sbjct:    17 NFNQDYSCFACGTEKGFLIFSCDPFKERFGRVFD--GGVGIVEMLFRCNILAIVGGGKKP 74

Query:   152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIE 211
             +Y  N+VMIWDD+Q++CI +L F+SEV++VKLRRDRI+VVLE K+++YNF+DL+L+HQ+E
Sbjct:    75 RYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVHQLE 134

Query:   212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271
             T  NPKG+CA+  G  + VL CPGL+ G V VE Y  K+T+ I AH+  ++  AL +DG 
Sbjct:   135 TTNNPKGICAICPGTVN-VLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNKDGT 193

Query:   272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
             LLAT+S KGTL+RIF+T  G  ++E+RRG +RAEIYS+AF++++  L VSSDK T H+F+
Sbjct:   194 LLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNNDSTALCVSSDKNTGHIFD 253

Query:   332 LKVNSGSARSE 342
             L +   S + E
Sbjct:   254 LSMAKPSPKEE 264

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 132/244 (54%), Positives = 174/244 (71%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
             +S+NQD+ CF A T +GFR+++C PF E  RR F   GGIG+ EMLFR +I  L G   +
Sbjct:    20 VSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTSIFGLAGAESN 79

Query:   151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
              ++P   + +WDD+  R I + +F SE+R+V+L +D  +VVLE+ I VY F DL+L +Q 
Sbjct:    80 TEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLRLFYQA 139

Query:   211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
              T++NP GLC +S    + V  CPG  KGQV +EH+  K T+FI AHDS ++C  +  DG
Sbjct:   140 RTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSPLSCMTMALDG 199

Query:   271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              LLAT+S +GTL+RIFNT DGT +QEVRRG DRAEIYS+A S N QWLAVSSDKGTVHVF
Sbjct:   200 TLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQWLAVSSDKGTVHVF 259

Query:   331 NLKV 334
             +L+V
Sbjct:   260 SLRV 263

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q22UW9 TTHERM_00577340 "WD repeat domain phosphoinositide-interacting protein 3" [Tetrahymena thermophila SB210 (taxid:312017)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 128/244 (52%), Positives = 177/244 (72%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             ++SFNQD+GCF+ GT+ GF IYN +PF++I+ R    GGGIG+VEML+RCNI+ALVGGG 
Sbjct:     9 YLSFNQDYGCFSCGTEDGFNIYNTEPFKQIYSRSV--GGGIGIVEMLYRCNIIALVGGGK 66

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQ 209
              P++P  KV +WDD Q + I E++FRSEV++VKL+ DR+IVVLE +I+V+NFADLKL+  
Sbjct:    67 SPKFPPTKVQLWDDSQLKRIAEMNFRSEVKAVKLKADRVIVVLETRIYVHNFADLKLIDT 126

Query:   210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269
             I+T  NP GLC+V+     ++L  P  + G+V V  Y+  +T  I AH S + C      
Sbjct:   127 IDTCPNPLGLCSVNTEGDEIILATPHKEVGEVNVHLYSDNKTISIRAHQSALNCLQTNPR 186

Query:   270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329
             G  LAT+S KGT++RI+NT  G LLQE+RRG++ A+IYS+AF     ++A SSD GT+H+
Sbjct:   187 GTKLATASQKGTIIRIYNTKKGELLQELRRGSEYAQIYSIAFHPKGTFVACSSDSGTIHI 246

Query:   330 FNLK 333
             F LK
Sbjct:   247 FALK 250

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 131/246 (53%), Positives = 170/246 (69%)

Query:    91 ISFNQDHGCFAAGTDHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148
             +++NQ    F  GT+HGF +Y+C P   + I R   E   G  V EMLF  N+ A VG G
Sbjct:    36 VAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHE--SGFKVAEMLFLSNLFAFVGNG 93

Query:   149 -PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL 207
               + +YP NKV +WDD+++ C+ EL+F+SEV +VKL R+ ++VVL+Q I+VY F +LK+ 
Sbjct:    94 YNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKVD 153

Query:   208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT 267
               IET+ NPKGLC V+      VL CPG   GQV+V        KFI AHDS IAC  LT
Sbjct:   154 RVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLT 213

Query:   268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327
              DG LLAT+STKGTL+RIFN +DGTLLQE RRG +RAEIY++A SSN +W+A SS+KGT+
Sbjct:   214 LDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVAISSNLKWVAASSEKGTL 273

Query:   328 HVFNLK 333
             HVF L+
Sbjct:   274 HVFRLR 279

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 123/244 (50%), Positives = 164/244 (67%)

Query:    90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
             +  FNQDHGCFA G ++GFR+YN DP +E  +++F  GG +G VEMLFRCN LALVGGG 
Sbjct:    15 YAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGG-VGYVEMLFRCNYLALVGGGK 73

Query:   150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLH 208
              P+YP NKVMIWDD + + + E+ F +EV++VKLRRDRI+VVL+  I V+ F  +   LH
Sbjct:    74 KPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQLH 133

Query:   209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFAL 266
               ET  NPKGLC +     + +L  PG   G V++   AS  K    I AH+  ++C AL
Sbjct:   134 VFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIAL 193

Query:   267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
                G  +AT+S KGTL+RIF+T  G L+QE+RRG+  A IY + F+ +A  + VSSD GT
Sbjct:   194 NLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHGT 253

Query:   327 VHVF 330
             VH+F
Sbjct:   254 VHIF 257

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 49/249 (19%), Positives = 100/249 (40%), Gaps = 20/249 (8%)

Query: 91  ISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149
           ++F+ D         D   ++++ +    +      +G    V ++    +   L  G  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTL---KGHTGPVRDVAASADGTYLASGSS 71

Query: 150 DPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK 205
           D       + +WD     C+  L    S V SV    D  I+     ++ I V++    K
Sbjct: 72  D-----KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126

Query: 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACF 264
            L  +    +   + +V+       +     Q G +++ +    K    +  H   +   
Sbjct: 127 CLTTLRGHTDW--VNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324
           A + DG+ L +SS+ GT +++++   G  L  +R       + S+AFS +   LA  S+ 
Sbjct: 184 AFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLASGSED 240

Query: 325 GTVHVFNLK 333
           GT+ V++L+
Sbjct: 241 GTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE-VRSVKLRRDRIIVV---LEQKIFVY 199
           L     D       + +WD    +C+  L   ++ V SV    D   V     +  I ++
Sbjct: 108 LSSSSRD-----KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 200 NFADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH 257
           +    K +  +    +   + +V+    G  +L       G +++ +    K    +  H
Sbjct: 163 DLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGH 218

Query: 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317
           ++ +   A + DG LLA+ S  GT +R+++   G  +Q +        + SLA+S + + 
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKR 275

Query: 318 LAVSSDKGTVHVFN 331
           LA  S  GT+ +++
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 47/247 (19%), Positives = 95/247 (38%), Gaps = 24/247 (9%)

Query: 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF--RSEVRSVKLR--- 184
            +  + F  +   L+ G  D       + +WD       I  L     S V  + L    
Sbjct: 67  SITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 185 RDRIIVVLE---QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240
            + I++        + +++ +   KL+  +E  +      A S      +L       G 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGT 179

Query: 241 VRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
           +++ +    K    +  H   ++  A + DG LL  S +    +R+++   G LL+    
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359
           G   + + S  FS +   LA  S  GT+ +++L+    S+ S  R+ S  +    S++F 
Sbjct: 240 GHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLR----SSSSLLRTLSGHSSSVLSVAFS 293

Query: 360 KGEESIF 366
              + + 
Sbjct: 294 PDGKLLA 300

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 18/262 (6%)

Query: 79  STSSSPPPTLLHISFNQDHGCFAA--GTDHGFRIYNCDPFREIFRRDFERGGGIGVVEML 136
           ST +     +  ++F+ D G   A   +D   R+++    + +        G    V   
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSVVSS 248

Query: 137 FRCNILALVGGGPDPQYPLNKVMIWD-DHQSRCIGELSFRSE-VRSVKLRRDRIIVV--- 191
           F  +   L  G  D       + +WD    S  +  LS  S  V SV    D  ++    
Sbjct: 249 FSPDGSLLASGSSD-----GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251
            +  + +++    KLL  +    +   + ++S      +LV  G   G +R+    + + 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311
              +   S +   + + DG+++++ ST GT VR+++   G+LL+ +     R  + SL F
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSR--VTSLDF 420

Query: 312 SSNAQWLAVSSDKGTVHVFNLK 333
           S + + LA  S   T+ +++LK
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 62/359 (17%), Positives = 126/359 (35%), Gaps = 26/359 (7%)

Query: 21  NPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQDEPDSFSPSIPESNPNYQMPLPSPAEST 80
             + +S +S   S   +  +L    +  S+           +     +  + LP  +   
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 81  SSSPPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFR 138
                 ++  I+F+ D     +  +D   ++++ D   ++ +  +      +  + +   
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 139 C-NILALVGGGPDPQYPLNKVMIWD-DHQSRCIGELSF-RSEVRSVKLRRDRIIVVLE-- 193
             N + L     D       V +WD     + I  L      V S+    D  ++     
Sbjct: 121 DGNSILLASSSLD-----GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 194 --QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-- 249
               I +++    K L  +                G L++       G +R+   ++   
Sbjct: 176 LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGS-SDGTIRLWDLSTGKL 233

Query: 250 -RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
            R+      DS ++ F  + DG LLA+ S+ GT +R+++    + L     G     + S
Sbjct: 234 LRSTLSGHSDSVVSSF--SPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSGHSS-SVLS 289

Query: 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGEESIFI 367
           +AFS + + LA  S  GTV +++L            +      P SSLSF      +  
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDL---ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313
           +  H   + C A + DG+LLAT S  GT +++++   G LL+          +  +A S+
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLR--TLKGHTGPVRDVAASA 61

Query: 314 NAQWLAVSSDKGTVHVFNLK 333
           +  +LA  S   T+ +++L+
Sbjct: 62  DGTYLASGSSDKTIRLWDLE 81

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 31/188 (16%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 156 NKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE 211
             + +WD    + +         S V S       +     +  I +++      L +  
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT- 279

Query: 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV---EHYASKRTKFIMAHDSRIACFALTQ 268
              +   + +V+      +L   G   G VR+   E      +  +  H+  ++  + + 
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328
           DG LL +  +    +R+++   G  L+ +   ++   + S++FS + + ++  S  GTV 
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN---VLSVSFSPDGRVVSSGSTDGTVR 395

Query: 329 VFNLKVNS 336
           +++L   S
Sbjct: 396 LWDLSTGS 403

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
PTZ00420	568	coronin; Provisional	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.83
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.74
KOG4328	498	consensus WD40 protein [Function unknown]	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.73
KOG2055	514	consensus WD40 repeat protein [General function pr	99.72
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.71
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.64
KOG0649	325	consensus WD40 repeat protein [General function pr	99.64
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.6
KOG1188	376	consensus WD40 repeat protein [General function pr	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
KOG2321	703	consensus WD40 repeat protein [General function pr	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.55
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.52
KOG1310	758	consensus WD40 repeat protein [General function pr	99.5
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG1334	559	consensus WD40 repeat protein [General function pr	99.46
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.43
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.42
PRK00178	430	tolB translocation protein TolB; Provisional	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
KOG4227	609	consensus WD40 repeat protein [General function pr	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.34
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.32
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.28
KOG2315	566	consensus Predicted translation initiation factor	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.24
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.23
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.21
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.21
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.13
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.12
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.12
KOG2314	698	consensus Translation initiation factor 3, subunit	99.11
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.06
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.04
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
KOG2314	698	consensus Translation initiation factor 3, subunit	99.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.02
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.98
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.93
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.91
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.9
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.88
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.84
KOG1334	559	consensus WD40 repeat protein [General function pr	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.83
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.77
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.75
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.74
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.72
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.59
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
KOG2695	425	consensus WD40 repeat protein [General function pr	98.48
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.46
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.46
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.42
PRK02888	635	nitrous-oxide reductase; Validated	98.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.39
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.36
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.31
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.3
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.28
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.25
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.21
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.2
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.18
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.13
COG3391	381	Uncharacterized conserved protein [Function unknow	98.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.03
COG3391	381	Uncharacterized conserved protein [Function unknow	98.03
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.98
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.97
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.94
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.93
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.92
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.81
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.77
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.75
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.75
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.73
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.7
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.69
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.64
KOG3621	726	consensus WD40 repeat-containing protein [General	97.63
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.62
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.6
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.6
KOG3621	726	consensus WD40 repeat-containing protein [General	97.58
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.53
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.52
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.52
KOG2395	644	consensus Protein involved in vacuole import and d	97.49
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.39
KOG2395	644	consensus Protein involved in vacuole import and d	97.39
PRK13616	591	lipoprotein LpqB; Provisional	97.36
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.32
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.27
PRK10115	686	protease 2; Provisional	97.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.02
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.01
PRK13616	591	lipoprotein LpqB; Provisional	96.91
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.89
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.8
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.66
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.61
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.56
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.45
KOG2444	238	consensus WD40 repeat protein [General function pr	96.41
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.31
PRK10115	686	protease 2; Provisional	96.23
COG5167	776	VID27 Protein involved in vacuole import and degra	96.21
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.18
PHA02713	557	hypothetical protein; Provisional	96.1
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.87
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.7
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.68
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.62
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.61
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.51
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.51
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.48
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.39
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.35
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.14
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.08
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.07
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.95
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.85
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.84
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.67
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.62
KOG2444	238	consensus WD40 repeat protein [General function pr	94.24
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.17
COG5167	776	VID27 Protein involved in vacuole import and degra	94.14
PHA02713	557	hypothetical protein; Provisional	94.06
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.91
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.62
COG5276	370	Uncharacterized conserved protein [Function unknow	93.56
COG4880	603	Secreted protein containing C-terminal beta-propel	93.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.38
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	93.34
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.28
COG5276	370	Uncharacterized conserved protein [Function unknow	93.01
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.0
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.95
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.8
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.57
COG1770	682	PtrB Protease II [Amino acid transport and metabol	92.36
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.36
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.27
KOG2247	615	consensus WD40 repeat-containing protein [General	92.02
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.94
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.74
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.65
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.59
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.54
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.26
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.01
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.0
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.8
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.69
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.66
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.97
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	89.53
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.34
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	89.27
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.23
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.94
PHA03098	534	kelch-like protein; Provisional	87.36
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.89
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.84
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.45
PRK13684	334	Ycf48-like protein; Provisional	86.37
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.03
COG4590	733	ABC-type uncharacterized transport system, permeas	85.83
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.46
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.16
PHA03098	534	kelch-like protein; Provisional	83.51
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.21
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.92
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	82.89
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.79
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.7
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.63
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	82.33
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.85
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	80.5
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.41

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.5e-42  Score=281.04  Aligned_cols=252  Identities=15%  Similarity=0.261  Sum_probs=222.3

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .+...+|.++|.|++|+|+|+.|++|+ |.++|+||+++....  .... +|...|.+++|+|++..+++++.|     |
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~~d-----g  179 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGSKD-----G  179 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccccC-----C
Confidence            355679999999999999999999999 999999999887666  4454 999999999999999999999998     9


Q ss_pred             cEEEEeCCCCcEEE-EEe-cCCceeEEEEee-----CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC
Q 017642          157 KVMIWDDHQSRCIG-ELS-FRSEVRSVKLRR-----DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       157 ~i~vwd~~~~~~~~-~~~-~~~~v~~~~~~~-----~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      +|++||.++|+++. .+. |...|++++|.|     ..+.++   .||.|+|||+..++++..+.+|..+|+|+.|--+|
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence            99999999997664 455 999999999987     456666   59999999999999999999999999999987666


Q ss_pred             CeEEEEeecCCCCeEEEEecCc----------------------------------------------------------
Q 017642          227 GSLVLVCPGLQKGQVRVEHYAS----------------------------------------------------------  248 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~----------------------------------------------------------  248 (368)
                          ++++|+.|++|++|+...                                                          
T Consensus       260 ----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  260 ----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             ----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence                445699999999986531                                                          


Q ss_pred             ----------------------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          249 ----------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       249 ----------------------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                                            +++..+.+|..-|+.+.|+||++++|+++-|.. |++||.++|+.+..|++  |-+.|
T Consensus       336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~V  412 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAV  412 (480)
T ss_pred             cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--cccee
Confidence                                  112245578888999999999999999999999 99999999999999999  88999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      +.++|+.|.++|++|+.|.++++|++++.+-.-+..++
T Consensus       413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             EEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            99999999999999999999999999999988877765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.5e-39  Score=267.11  Aligned_cols=242  Identities=18%  Similarity=0.159  Sum_probs=221.3

Q ss_pred             CCcccccCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           76 PAESTSSSPPPTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        76 ~~~~~~~~h~~~v~~~~~s~~--g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      .......+|...|.++.|+|.  +..||+|+ |+.+++|+++.....  ..+. +|...|..++|+|++.++.+++.|  
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~TasfD--  282 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTASFD--  282 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeecccc--
Confidence            455677899999999999997  66899999 999999999876555  5565 889999999999999999999998  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                         .+-++||++++..+...+ |...|.+++|.+||.+++   .|..-+|||+++|+++..+.+|..+|..++|+|+|-.
T Consensus       283 ---~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~  359 (459)
T KOG0272|consen  283 ---STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH  359 (459)
T ss_pred             ---cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE
Confidence               999999999998877777 999999999999999999   5889999999999999999999999999999999953


Q ss_pred             EEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                        +| +|+.|++++||+... ..+.++.+|..-|+.|.|+| .|.+|++++.|++ ++||...++.+++.+.+  |.+.|
T Consensus       360 --lA-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV  433 (459)
T KOG0272|consen  360 --LA-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKV  433 (459)
T ss_pred             --Ee-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--Cccce
Confidence              44 589999999998876 55778899999999999998 7789999999999 99999999999999999  89999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      .++++++|+.++++++.|++|++|.
T Consensus       434 ~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  434 ISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-38  Score=264.78  Aligned_cols=250  Identities=16%  Similarity=0.187  Sum_probs=228.8

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCCCcEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~~~i~  159 (368)
                      +-+.+|..+.|+.|++.|++|+ ++.++||+......  ...|. +|...+.++.|+|.  ...+++++.|     |+++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~D-----gtvk  244 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLR-GHTSRVGAAVFHPVDSDLNLATASAD-----GTVK  244 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEe-ccccceeeEEEccCCCccceeeeccC-----Ccee
Confidence            4567899999999999999999 99999999876643  36676 99999999999986  6789999998     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      +|++.+..++..+. |...|..++|+|+|++++   .|.+-++||++++..+...++|...|.+++|.+||.   |+++|
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~tG  321 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAATG  321 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeecc
Confidence            99999999999998 999999999999999999   699999999999999888899999999999999997   56679


Q ss_pred             CCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec-
Q 017642          236 LQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-  313 (368)
Q Consensus       236 ~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp-  313 (368)
                      +.|..-+||+. +++++..+.+|..+|.+|+|+|+|..||||+.|++ ++|||++..+.++.+..  |..-|..|.|+| 
T Consensus       322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~p~  398 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYSPQ  398 (459)
T ss_pred             CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEeccc
Confidence            99999999775 56888899999999999999999999999999999 99999999999999988  888999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCC
Q 017642          314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST  346 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  346 (368)
                      .|.+|++++.|++++||.-.+.+..+...++..
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~  431 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG  431 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCcc
Confidence            788999999999999999999999988887743

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-37  Score=251.80  Aligned_cols=244  Identities=18%  Similarity=0.255  Sum_probs=209.1

Q ss_pred             CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-----CeEEEEecC
Q 017642           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-----NILALVGGG  148 (368)
Q Consensus        75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~  148 (368)
                      .++..+-.+|...|.|++|+|||+.||+|+ |+.|++||-.+++... +.+. +|...|.+++|.|     ....+++++
T Consensus       147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~-gH~K~It~Lawep~hl~p~~r~las~s  224 (480)
T KOG0271|consen  147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALR-GHKKWITALAWEPLHLVPPCRRLASSS  224 (480)
T ss_pred             CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-cccc-CcccceeEEeecccccCCCccceeccc
Confidence            344556789999999999999999999999 8889999988776653 4554 8999999999964     566899999


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEe--------------
Q 017642          149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--------------  211 (368)
Q Consensus       149 ~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~--------------  211 (368)
                      .|     |.|+|||+..+.++..+. |...|+|++|-.+|.+..  .|++|++|+...|++.+.++              
T Consensus       225 kD-----g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd  299 (480)
T KOG0271|consen  225 KD-----GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD  299 (480)
T ss_pred             CC-----CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence            98     999999999999999988 999999999988876665  58999999887765333333              


Q ss_pred             -----------------------------------------------------------------ccCCCeeEEEEecCC
Q 017642          212 -----------------------------------------------------------------TIANPKGLCAVSQGV  226 (368)
Q Consensus       212 -----------------------------------------------------------------~~~~~v~~~~~~~~~  226 (368)
                                                                                       +|...|+.+.|+||+
T Consensus       300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~  379 (480)
T KOG0271|consen  300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG  379 (480)
T ss_pred             hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc
Confidence                                                                             444556677888888


Q ss_pred             CeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          227 GSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      +.  +| +++-|..|++|+-. ++.+..+.+|-..|+.++|+.|.++|++|+.|.+ +++||+++.+....+.+  |...
T Consensus       380 r~--IA-SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DE  453 (480)
T KOG0271|consen  380 RY--IA-SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADE  453 (480)
T ss_pred             cE--EE-EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCce
Confidence            73  55 47889999997754 5777889999999999999999999999999999 99999999999999998  7889


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      |.++.|+|||+.+++|+.|+.+++|.
T Consensus       454 Vf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  454 VFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.7e-36  Score=232.30  Aligned_cols=253  Identities=22%  Similarity=0.290  Sum_probs=218.0

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .....+..|+.+.+.||++.||+++...||+||+++........++ +|...|..+.|..++...+++++|     |+++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseD-----gt~k  108 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSED-----GTVK  108 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCC-----ceEE
Confidence            3344566899999999999999999999999999988876667786 888999999999999999999998     9999


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeec
Q 017642          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       160 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      |||++...+.+.+++..+|+++..+|+...++   .+|.|++||+.+..+.+.+ ......+.++.+.|||..  ++. +
T Consensus       109 IWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm--l~a-~  185 (311)
T KOG0315|consen  109 IWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM--LAA-A  185 (311)
T ss_pred             EEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE--EEE-e
Confidence            99999988889999999999999999866555   5799999999887666555 344567899999999986  332 4


Q ss_pred             CCCCeEEEEecCc-------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEE
Q 017642          236 LQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIY  307 (368)
Q Consensus       236 ~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~  307 (368)
                      ...|..++|+...       .++..++.|.+.|..+.+|||+++||+++.|.+ ++||+.++. +.-..+.+  |...++
T Consensus       186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvW  262 (311)
T KOG0315|consen  186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVW  262 (311)
T ss_pred             cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEE
Confidence            5789999998654       345567899999999999999999999999999 999999887 44445555  778999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      +.+||.||+||++|+.|+.+++|++..+++....+++
T Consensus       263 dc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  263 DCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             eeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            9999999999999999999999999999988776665

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.5e-36  Score=270.01  Aligned_cols=243  Identities=18%  Similarity=0.273  Sum_probs=218.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-----------------------------ceEEEcccCCceeEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-----------------------------IFRRDFERGGGIGVV  133 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-----------------------------~~~~~~~~~~~~~~~  133 (368)
                      -...++|..|++|+++||.|- |..|++|.+.+.+.                             ...+.+. +|...|.
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVy  455 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVY  455 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCcee
Confidence            345899999999999999998 77899999874210                             0112233 8899999


Q ss_pred             EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEE
Q 017642          134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQ  209 (368)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~  209 (368)
                      ...|+|+..++++++.|     +++|+|.+.+..++..++ |..+|+.+.|+|.|.+++   .|++.++|.....+.++.
T Consensus       456 g~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             eeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence            99999999999999998     999999999999999998 999999999999999999   599999999998999999


Q ss_pred             EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      +.+|...|.|+.|+|+..+  ++ +|+.|.++++|+.. +..++.+.+|.++|.+++|+|+|++|++|++||. |+|||+
T Consensus       531 faghlsDV~cv~FHPNs~Y--~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl  606 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNY--VA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL  606 (707)
T ss_pred             hcccccccceEEECCcccc--cc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence            9999999999999999984  55 48999999998765 5778889999999999999999999999999999 999999


Q ss_pred             CCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .+++.+..+.+  |.+.|.+|.|+.||..||+|+.|.+|++||+.+....
T Consensus       607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999998  7899999999999999999999999999999876554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=228.87  Aligned_cols=253  Identities=14%  Similarity=0.210  Sum_probs=215.4

Q ss_pred             ccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcce---EEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      .....|++.|+.++..+.+ ..+.+++ |..+.+|++......+   .+.+. +|...+..+..++++.+.++++.|   
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD---   84 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWD---   84 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEecccc---
Confidence            3567899999999999875 4667777 8889999997654433   56676 899999999999999999999998   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc--CCCeeEEEEecCCC
Q 017642          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVG  227 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~  227 (368)
                        +.+++||+.+++..+.|. |...|.+++|++|.+.++   .|.+|++|++... +..++...  .+.|.++.|+|+..
T Consensus        85 --~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   85 --GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             --ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCC
Confidence              999999999999999998 999999999999999998   5999999998654 44444333  78899999999986


Q ss_pred             eEEEEeecCCCCeEEEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      ..+++. ++.|++|++|+.....+ ..+.+|.+.++.++++|||.++++|+.||. +.+||++.++.++.+.   +...|
T Consensus       162 ~p~Ivs-~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~v  236 (315)
T KOG0279|consen  162 NPIIVS-ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDIV  236 (315)
T ss_pred             CcEEEE-ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCeE
Confidence            666665 78999999999887554 457899999999999999999999999999 9999999999988887   56799


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      .+++|+|+.-+|+.+.. ..|+|||++++....+..-.
T Consensus       237 ~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  237 NSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             eeEEecCCceeEeeccC-CceEEEeccchhhhhhcccc
Confidence            99999999877776654 45999999999888776543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-34  Score=230.20  Aligned_cols=255  Identities=15%  Similarity=0.131  Sum_probs=224.7

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .+..+|.+.|+++.|++|.++|++++ |+.+.|||.-+........   -....|+.++|+|.+.++++++-|     +.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLd-----N~  120 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLD-----NK  120 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcC-----ce
Confidence            67789999999999999999999999 8889999987666553333   467889999999999999999998     99


Q ss_pred             EEEEeCCCC------cEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCC
Q 017642          158 VMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVG  227 (368)
Q Consensus       158 i~vwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~  227 (368)
                      ..||++.+.      ...+++. |.+.+.++.|..|+.++.  .|.++-+||+++++.+..|.+|.+.|.+++++| +++
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            999998854      3445566 999999999999998888  688999999999999999999999999999999 665


Q ss_pred             eEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          228 SLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      .  ++ +|+-|+..++|+.. +..++.+.+|+..|++|.|.|+|.-+++|++|++ .++||++..+.+..+.......+|
T Consensus       201 t--Fv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  201 T--FV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             e--EE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence            4  33 47889999997755 5778899999999999999999999999999999 999999999999888864455689


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  345 (368)
                      ++++||-.|++|.+|..|.++.+||.-+++..-...++.
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe  315 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE  315 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC
Confidence            999999999999999999999999999988877766663

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.3e-34  Score=227.04  Aligned_cols=237  Identities=16%  Similarity=0.202  Sum_probs=206.5

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCC--C--cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF--R--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ......|..++|+|.|+++|+|+ |+...||++...  +  ....+.+. +|...+.++.|-++..++.+.+ |     .
T Consensus        94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~dD~~ilT~SG-D-----~  166 (343)
T KOG0286|consen   94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLDDNHILTGSG-D-----M  166 (343)
T ss_pred             ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcCCCceEecCC-C-----c
Confidence            34567899999999999999999 999999999754  2  23345565 8999999999988766655554 4     8


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +..+||+++++.+..|. |.+.|.++.++| +++.++   .|+..++||++.+.+.++|.+|...|+.+.|.|+|..  +
T Consensus       167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a--f  244 (343)
T KOG0286|consen  167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA--F  244 (343)
T ss_pred             eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe--e
Confidence            99999999999999999 999999999999 888877   5999999999999999999999999999999999985  4


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                      + +|+.|++.++++... +.+..+..  -..+|++++|+-.|++|++|..|.+ +.+||.-.++.+..+.+  |...|.+
T Consensus       245 a-tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvSc  320 (343)
T KOG0286|consen  245 A-TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSC  320 (343)
T ss_pred             e-ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEE
Confidence            4 499999999966555 44444432  3457999999999999999999999 99999999999999998  8999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEE
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +..+|||..|++|+.|.++|||.
T Consensus       321 l~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  321 LGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999994

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=8.9e-34  Score=228.88  Aligned_cols=270  Identities=59%  Similarity=0.976  Sum_probs=238.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      ...+++|+.|...+++|.|.+.+||++++.++...+.+. .....+..|.|..+.+++++|+..+.|..+.|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            455699999999999999999999999998776666665 4558889999999999999999999999999999998888


Q ss_pred             cEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe
Q 017642          167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (368)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~  245 (368)
                      +++.++....+|.++.+.++...++..+.|+||... +.+.++.+....++-..+++.|..+..+||+.|-.-|.|.|-+
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            999999999999999999999888899999999997 6788888887777777899999988889999999999999944


Q ss_pred             cCcce---eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          246 YASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       246 ~~~~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      .....   ...+.+|...|.|++.+-+|.++|+++..|+.|||||..+|+.+++++.+.....|.+|+|||++.+|+++|
T Consensus       166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence            44433   377899999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             CCCeEEEEEccCCCCCCCCCCCCCCCCCccCCCcccccceeeeeeC
Q 017642          323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGEESIFIF  368 (368)
Q Consensus       323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (368)
                      +.|+|+||.++......+           ..++++|...++|+||.
T Consensus       246 dKgTlHiF~l~~~~~~~~-----------~~SSl~~~~~~lpky~~  280 (346)
T KOG2111|consen  246 DKGTLHIFSLRDTENTED-----------ESSSLSFKRLVLPKYFS  280 (346)
T ss_pred             CCCeEEEEEeecCCCCcc-----------ccccccccccccchhcc
Confidence            999999999988665432           11667777778888763

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-34  Score=225.27  Aligned_cols=243  Identities=14%  Similarity=0.256  Sum_probs=204.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....+|...|..+..++||++.++++ |+.+++||+.+++..  +.|. +|...+++++++++...+++++.|     +
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--~~f~-GH~~dVlsva~s~dn~qivSGSrD-----k  127 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--RRFV-GHTKDVLSVAFSTDNRQIVSGSRD-----K  127 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--EEEE-ecCCceEEEEecCCCceeecCCCc-----c
Confidence            455678999999999999999999999 999999999987554  5565 999999999999999999999998     9


Q ss_pred             cEEEEeCCCCcEEEEEe---cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          157 KVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      +|++||+.. .+..++.   +.+.|.+++|+|+  ..+++   .|++|++||+++.+....+.+|.+-++.++++|||. 
T Consensus       128 Tiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-  205 (315)
T KOG0279|consen  128 TIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-  205 (315)
T ss_pred             eeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-
Confidence            999999654 4555554   3789999999998  55666   699999999999999999999999999999999998 


Q ss_pred             EEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-------
Q 017642          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------  301 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------  301 (368)
                       +.+ +|+.||.+.+|+.+.+.-.....|...|.+++|+|+.-.|+.+... . |+|||+.++.++.+++...       
T Consensus       206 -lca-sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-s-IkIwdl~~~~~v~~l~~d~~g~s~~~  281 (315)
T KOG0279|consen  206 -LCA-SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-S-IKIWDLESKAVVEELKLDGIGPSSKA  281 (315)
T ss_pred             -EEe-cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC-c-eEEEeccchhhhhhcccccccccccc
Confidence             244 5899999999998876665666788899999999987666655544 4 9999999998887766421       


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ......+++|++||..|++|..|+.|++|.+..
T Consensus       282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             CCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            122456789999999999999999999999853

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=231.81  Aligned_cols=250  Identities=18%  Similarity=0.243  Sum_probs=221.2

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....+|...|+.+-|+|+-.++++++ |.+|++||..+++..  ..+. +|...+.+++|+..+..+++++.|     -.
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~Lr-GHt~sv~di~~~a~Gk~l~tcSsD-----l~  173 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLR-GHTDSVFDISFDASGKYLATCSSD-----LS  173 (406)
T ss_pred             hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhh-ccccceeEEEEecCccEEEecCCc-----cc
Confidence            34456999999999999999999998 778999999887774  6676 888889999999999999999998     77


Q ss_pred             EEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          158 VMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       158 i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +++||..+ .++++.+. |...|.+++|-|.|.+++   .|.+|+.|++.+|-++.++.+|...+..+..+.||.  +++
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i~A  251 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--IIA  251 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--EEE
Confidence            99999876 45565555 999999999999999888   599999999999999999999999999998888885  455


Q ss_pred             eecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCC---------------CCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQD---------------GQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~---------------g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                       +++.|.++++|....+ +...+..|+.+|.|++|.|.               +.++++++.|++ |++||+.++.++.+
T Consensus       252 -s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~t  329 (406)
T KOG0295|consen  252 -SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFT  329 (406)
T ss_pred             -ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEE
Confidence             5889999999987764 55678899999999999763               359999999999 99999999999999


Q ss_pred             eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      +.+  |...|..++|+|.|+||+++.+|+++++||+++++.....+
T Consensus       330 L~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  330 LVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             Eec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            998  88999999999999999999999999999999998776555

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.1e-33  Score=236.28  Aligned_cols=245  Identities=18%  Similarity=0.285  Sum_probs=217.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ...|++++|+.+|.+||+|. ++.++||+... ...  ..+. .|..+|+++.|+..+.++++++.|     +++.+||.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~--~tl~-~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~  305 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLI--STLG-QHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDA  305 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhh--hhhh-ccCCceEEEEEcCCCCEEEeccCC-----ccEEEEec
Confidence            46899999999999999999 77799999653 222  3453 899999999999999999999998     99999999


Q ss_pred             CCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642          164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                      .+++..+.+. |..+-.++.|-.+..+..  .|+.|+|+.+...+++.++.+|.++|.++.|.|.+.  +|+ +++.|++
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLa-S~SdD~T  382 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLA-SCSDDGT  382 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEE-EecCCCe
Confidence            9999999998 666668899998888887  699999999988889999999999999999999987  344 4789999


Q ss_pred             EEEEec-CcceeeeeeccCcceEEEEECCCC---------CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          241 VRVEHY-ASKRTKFIMAHDSRIACFALTQDG---------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       241 i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g---------~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      ++||.. .......+.+|...|..+.|+|+|         ..|++++.|++ |++||+..+.++..|..  |..+|.+++
T Consensus       383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysva  459 (524)
T KOG0273|consen  383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSVA  459 (524)
T ss_pred             eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEEE
Confidence            999984 456777899999999999999965         37999999999 99999999999999987  889999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      |+|+|+++|+|+.||.|.+|++++++-.......
T Consensus       460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             ecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence            9999999999999999999999999887655543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=243.99  Aligned_cols=253  Identities=19%  Similarity=0.299  Sum_probs=218.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ..|...|.++.|+++|++|++++ ++.+++|+...........+. +|...|.+++|++++.++++++.|     ++|++
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D-----~tiri  229 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDD-----KTLRI  229 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCC-----ceEEE
Confidence            44578999999999999999998 888999999655522234443 899999999999999999999998     99999


Q ss_pred             EeC-CCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          161 WDD-HQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ||+ ..+..++++. |...|++++|+|++++++   .|++|++||+++++++..+.+|...|..++|++++..  +++ +
T Consensus       230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~--l~s-~  306 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL--LVS-A  306 (456)
T ss_pred             eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE--EEE-c
Confidence            999 5568889998 999999999999998777   6999999999999999999999999999999999985  443 5


Q ss_pred             CCCCeEEEEecCcce---eeeeeccCcc--eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc-ccEEEE
Q 017642          236 LQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSL  309 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~---~~~~~~~~~~--i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l  309 (368)
                      +.|+.|++|+.....   ...+..+...  ++++.|+|++++|++++.|+. +++||+..+..+..+..+... ..+.+.
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence            789999999988766   4566666555  999999999999999999999 999999999999999884321 145556


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      ..++.+.++++|+.|+.|++||+.++......+.+
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            66789999999999999999999998887777777

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-32  Score=209.78  Aligned_cols=249  Identities=15%  Similarity=0.255  Sum_probs=210.1

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      ...+...|.++|..+.|+-||+|.++++ |++|++|+...+  .+.+++. +|...+.+.+.+.+...+++++.|     
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYs-ghG~EVlD~~~s~Dnskf~s~GgD-----   80 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYS-GHGHEVLDAALSSDNSKFASCGGD-----   80 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeec-CCCceeeeccccccccccccCCCC-----
Confidence            3455678999999999999999988877 999999996544  4447776 899999999999999999999988     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC--CeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ..+.+||+++|+.++.+. |.+.|+.++|+.+...++   .|..+++||.++  .++++.+....+.|.++.+....   
T Consensus        81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he---  157 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE---  157 (307)
T ss_pred             ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccE---
Confidence            999999999999999999 999999999999999888   599999999975  57788888888888888876443   


Q ss_pred             EEEeecCCCCeEEEEecCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                       ++ +|+.||+++.++..... .....  ..+|+++.|++|++.++.++.|++ |++.|-.+|+.+..++++.....-..
T Consensus       158 -Iv-aGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykld  232 (307)
T KOG0316|consen  158 -IV-AGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLD  232 (307)
T ss_pred             -EE-eeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeee
Confidence             34 38999999996655443 33333  448999999999999999999999 99999999999999999554445556


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                      .+++.....+++|++||.|++||+.+.......
T Consensus       233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL  265 (307)
T ss_pred             eeecccceeEEeccCCceEEEEEeccceeeeee
Confidence            777777889999999999999999887766443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-32  Score=222.76  Aligned_cols=243  Identities=17%  Similarity=0.286  Sum_probs=216.1

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....+|++.|..|+|+..|++|++++ |-.+++||.+...... +.+ ++|...+.++.|-|.+..++++++|     .+
T Consensus       144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~-~gh~h~vS~V~f~P~gd~ilS~srD-----~t  216 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI-KSL-IGHEHGVSSVFFLPLGDHILSCSRD-----NT  216 (406)
T ss_pred             hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH-HHh-cCcccceeeEEEEecCCeeeecccc-----cc
Confidence            45678999999999999999999999 6669999988643332 223 3888889999999999999999998     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC------
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG------  227 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------  227 (368)
                      |+.|++.+|.++.++. |...|..++.+.||.+++   .|.+|++|-+.++++...+..|..++.+++|.|...      
T Consensus       217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence            9999999999999999 999999999999999999   588999999999999999999999999999977431      


Q ss_pred             -------eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          228 -------SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       228 -------~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                             ..+++ +|+.|++|++|+... .++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++...+..
T Consensus       297 at~~~~~~~~l~-s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  297 ATGSTNGGQVLG-SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             ccCCCCCccEEE-eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC
Confidence                   12444 489999999988765 778889999999999999999999999999999 99999999999999987


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                        |..-|++++|+.+..++++|+-|.++++|.-
T Consensus       375 --h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --CcceeEEEecCCCCceEEeccccceeeeeec
Confidence              7789999999999999999999999999964

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.4e-31  Score=213.09  Aligned_cols=249  Identities=17%  Similarity=0.210  Sum_probs=211.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .-...+|++.|+.+.|+|+|.+||+|+ |..|.+|++......+ ..+. +|...|+.+.|..++..+++++.|     .
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~gtD-----k  112 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCGTD-----K  112 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEecCC-----c
Confidence            345679999999999999999999999 9999999975433332 3343 899999999999999999999998     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +|+.||+++|++++.++ |..-|..+.-+.-|..++    .|+++++||+++..+++++. ...+++++.|...++..+ 
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~-  190 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVI-  190 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccccee-
Confidence            99999999999999999 899999998666677776    58999999999998888874 456788999998888633 


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC----CceeEeeEeccCcc--
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRA--  304 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~----~~~~~~~~~~~~~~--  304 (368)
                        +|.-|+.|++|+... .....+.+|...|+.|..+++|.++.+-+.|.+ +++||++-    ..++..+.++.|.-  
T Consensus       191 --sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  191 --SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             --eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence              477899999988754 667789999999999999999999999999999 99999974    34577787765544  


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ....++|+|++..+.+|+.|+.+++||.....-.
T Consensus       268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l  301 (338)
T KOG0265|consen  268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL  301 (338)
T ss_pred             hcceeeccCCCCccccccccceEEEeecccccEE
Confidence            4557789999999999999999999999875543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.7e-31  Score=237.85  Aligned_cols=207  Identities=16%  Similarity=0.252  Sum_probs=189.1

Q ss_pred             CCCCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642           72 PLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (368)
Q Consensus        72 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  150 (368)
                      .....+.....+|.++|+.+.|+|+.++|++++ |.++|+|.+++......  +. +|...|+.+.|+|.+.++++++.|
T Consensus       438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~--y~-GH~~PVwdV~F~P~GyYFatas~D  514 (707)
T KOG0263|consen  438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI--YK-GHLAPVWDVQFAPRGYYFATASHD  514 (707)
T ss_pred             ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEE--ec-CCCcceeeEEecCCceEEEecCCC
Confidence            334455566889999999999999999999999 78899999998877744  54 899999999999999999999998


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                           ++-++|......+.+.+. |-..|.|+.|+|+..+++   .|.+|++||+.+|..++.|.+|.++|.+++|+|+|
T Consensus       515 -----~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G  589 (707)
T KOG0263|consen  515 -----QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG  589 (707)
T ss_pred             -----ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC
Confidence                 999999999999999888 999999999999999999   69999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .+  |++ |+.||.|.+|+... ..+..+.+|.+.|.+|.|+.+|.+||+|+.|.. |++||+..
T Consensus       590 r~--LaS-g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-V~lWD~~~  650 (707)
T KOG0263|consen  590 RY--LAS-GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-VRLWDLTK  650 (707)
T ss_pred             ce--Eee-cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-EEEEEchh
Confidence            85  554 88999999999877 777889999999999999999999999999999 99999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.7e-31  Score=216.72  Aligned_cols=247  Identities=18%  Similarity=0.246  Sum_probs=220.3

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      -+.+..+|.+.|.|+++.|-.++|++|+ |++++|||+.+++..  ..+. +|...+..+++++...++++++.|     
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~ged-----  214 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAGED-----  214 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEecCC-----
Confidence            3467789999999999999999999999 999999999987776  4454 888999999999999999999998     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +.|+.||++..+.++.+. |-..|.+++.+|.-..++   .|.+++|||+++...+..+.+|..+|..+.+.+-...  +
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq--v  292 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ--V  292 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc--e
Confidence            999999999999999988 999999999999887777   6899999999999999999999999999998876654  3


Q ss_pred             EeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          232 VCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      + +|+.|++|++|+.. ++...++..|...+.+++.+|....+|+++.|.  |+-|++..|+.+..+.+  |.+.|++++
T Consensus       293 i-t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~  367 (460)
T KOG0285|consen  293 I-TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLS  367 (460)
T ss_pred             E-EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeee
Confidence            3 48899999997765 577778899999999999999999999999986  89999999999999887  888999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      ...|| ++++|+++|.|.+||.+++-.-.
T Consensus       368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             eccCc-eEEEcCCceEEEEEecCcCcccc
Confidence            98776 67789999999999999875543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-30  Score=232.30  Aligned_cols=246  Identities=15%  Similarity=0.246  Sum_probs=207.8

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..+|...+++++++|||+++|+|+ |+.|+|||...+-+.  .+|. .|...+..+.|...+..+++.+-|     |+|+
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~--vTFt-eHts~Vt~v~f~~~g~~llssSLD-----GtVR  417 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF--VTFT-EHTSGVTAVQFTARGNVLLSSSLD-----GTVR  417 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE--EEec-cCCCceEEEEEEecCCEEEEeecC-----CeEE
Confidence            357999999999999999999999 777999997755554  6676 899999999999999999999998     9999


Q ss_pred             EEeCCCCcEEEEEec--CCceeEEEEeeCccEEEe---C-CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          160 IWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       160 vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~---d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      .||+...+..+++..  +....+++..|.|.+++.   | =.|++|++++|+.+..+.+|.++|.+++|+|+++.  |+ 
T Consensus       418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~--La-  494 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL--LA-  494 (893)
T ss_pred             eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe--EE-
Confidence            999999999999984  445678888888998882   3 37999999999999999999999999999999983  44 


Q ss_pred             ecCCCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe------------
Q 017642          234 PGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR------------  299 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~------------  299 (368)
                      +|+.|.+|++|+.-..  .+.++. +...+..++|+|+|+.|++++.||. |.+||...+..+..+.+            
T Consensus       495 S~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D  572 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETD  572 (893)
T ss_pred             eccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccc
Confidence            5999999999986554  444443 4567899999999999999999999 99999987655533332            


Q ss_pred             ------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          300 ------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       300 ------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                            .......+.+++++||.++++|+..+.|+||++.++--.+
T Consensus       573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk  618 (893)
T KOG0291|consen  573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK  618 (893)
T ss_pred             eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence                  1123578999999999999999999999999998875443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-29  Score=199.99  Aligned_cols=247  Identities=15%  Similarity=0.270  Sum_probs=204.7

Q ss_pred             cccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      .....+|.+.|..++|+|- |..||+++ |+.|+||+... ..-.+...+...|...|.+++|+|.+.++++++-|    
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD----   82 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD----   82 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc----
Confidence            4456789999999999998 88999999 88899999874 33344455656789999999999999999999998    


Q ss_pred             CCcEEEEeCCCC--cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC---CeEEEEEeccCCCeeEEEEecC
Q 017642          155 LNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       155 ~~~i~vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~  225 (368)
                       .++.||.-..+  +++..++ |...|.+++|+++|.+|+   .|+.|-||.+..   .++...++.|...|..+.|+|.
T Consensus        83 -~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   83 -ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             -ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence             99999986544  6888888 999999999999999999   599999999963   4678888999999999999998


Q ss_pred             CCeEEEEeecCCCCeEEEEecC----cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-------Cc--
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYA----SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT--  292 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~----~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-------~~--  292 (368)
                      ..  +|+ +++.|.+|++|...    ..+++++.+|...|.+++|++.|..|+++++|++ |+||-...       ++  
T Consensus       162 ~d--lL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y  237 (312)
T KOG0645|consen  162 ED--LLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALY  237 (312)
T ss_pred             cc--eeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceE
Confidence            76  344 47899999995544    3678899999999999999999999999999999 99997321       11  


Q ss_pred             ----------------eeEeeE----------------eccCcccEEEEEEecC-CCEEEEEeCCCeEEEEEcc
Q 017642          293 ----------------LLQEVR----------------RGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       293 ----------------~~~~~~----------------~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~  333 (368)
                                      .+..|+                .+.|...|++++|.|. ...|+++++||.|++|.+.
T Consensus       238 ~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  238 DVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                            011111                1336678999999995 6789999999999999875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.7e-32  Score=231.37  Aligned_cols=240  Identities=14%  Similarity=0.190  Sum_probs=206.8

Q ss_pred             ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      -...+|+..|.++.|.| .+.+|++++ |+.|+||++-. ...+.+++. +|...|.++.|+..+..+.+++.|     +
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD-----~  280 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFD-----R  280 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhh-cchhhhhhhhccccCCeeeeeecc-----e
Confidence            45679999999999999 788889888 99999999976 333446776 999999999999999999999998     9


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCc-cEE-E--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIV-V--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      .|++||+++|+++..+.....++++.|+|++ ..+ +  .|+.|+.||+++++.++.+..|-+.+..+.|-+++..++. 
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis-  359 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS-  359 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee-
Confidence            9999999999999999999999999999987 333 3  6999999999999999999999999999999999997443 


Q ss_pred             eecCCCCeEEEEecCcce-----------------------------------------------eeeeeccC--cceEE
Q 017642          233 CPGLQKGQVRVEHYASKR-----------------------------------------------TKFIMAHD--SRIAC  263 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~~-----------------------------------------------~~~~~~~~--~~i~~  263 (368)
                        .+.|+.++||......                                               .+.+++|.  +.-..
T Consensus       360 --sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  360 --SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             --eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence              4689999998765210                                               12234443  33567


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEE
Q 017642          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN  331 (368)
Q Consensus       264 v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd  331 (368)
                      +.|||||.+|++|+.||. +.+||.++.+.+..++.  |.+.+..+.|+|.. ..+|+++.||.|++|+
T Consensus       438 v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcceEEEEecCCCcceeEecccCceeEecC
Confidence            899999999999999999 99999999999999998  78899999999965 4789999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=5e-32  Score=225.24  Aligned_cols=243  Identities=14%  Similarity=0.148  Sum_probs=209.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      +...|+..|.++.|+++|.++++|+ ++.|++|+.+-....   .+...|...|.+++|+++...++++++|     |+|
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk---~~~ahh~eaIRdlafSpnDskF~t~SdD-----g~i  204 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK---IIQAHHAEAIRDLAFSPNDSKFLTCSDD-----GTI  204 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH---HhhHhhhhhhheeccCCCCceeEEecCC-----CeE
Confidence            4567999999999999999999999 555999996533222   2332556889999999999999999998     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      +|||....+....+. |.-.|.+++|+|...+++   .|..|++||.+++.++.++..|...|..+.|+++++.  |++ 
T Consensus       205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~--Llt-  281 (464)
T KOG0284|consen  205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW--LLT-  281 (464)
T ss_pred             EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe--eEE-
Confidence            999999888877887 999999999999887777   4789999999999999999999999999999999964  444 


Q ss_pred             cCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          235 GLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       235 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                      ++.|..+++++.. .+.+..+++|+..++++.|+|-. .+|.+|+.||. |..|.+...+++..+.. .|...|++++|+
T Consensus       282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~h  359 (464)
T KOG0284|consen  282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAYH  359 (464)
T ss_pred             ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeecc
Confidence            7899999996655 78888999999999999999954 48999999999 99999886677766654 388999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |-|.+|++|+.|.++++|.-..+
T Consensus       360 PlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  360 PLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             ccceeEeecCCCcceeeeccCCC
Confidence            99999999999999999976543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=2.3e-30  Score=212.55  Aligned_cols=245  Identities=17%  Similarity=0.227  Sum_probs=205.3

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      ......+|.+.|+++.|+.||.+||+|+ ++.|+||+..++.....  +. ..-..+.-+.|+|...+++.|+.|     
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~--~~-~e~~dieWl~WHp~a~illAG~~D-----  169 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK--LD-QEVEDIEWLKWHPRAHILLAGSTD-----  169 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE--ee-cccCceEEEEecccccEEEeecCC-----
Confidence            4556789999999999999999999999 99999999988776633  32 344556678899999999999998     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCC----------------
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN----------------  215 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~----------------  215 (368)
                      |.+.+|.+..+...+.+. |..++++-.|.|+|+.++   .||+|++||..+++++..+....+                
T Consensus       170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT  249 (399)
T ss_pred             CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence            999999999987777777 999999999999999988   699999999999988777651110                


Q ss_pred             -----------------------------------CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcc
Q 017642          216 -----------------------------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR  260 (368)
Q Consensus       216 -----------------------------------~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~  260 (368)
                                                         .+.++.+.|....+-|++.|+.||+|.||+.....++..-.|...
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~  329 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG  329 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc
Confidence                                               001112222222333444588999999999999888888899999


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       261 i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      |..+.|-+ ..+|++++.+|. |++||.++|+++..+.+  |...|.+++++|++++++++|.|++.+||++.
T Consensus       330 V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  330 VTKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999988 679999999999 99999999999999999  88899999999999999999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.98  E-value=3.2e-30  Score=218.14  Aligned_cols=243  Identities=16%  Similarity=0.239  Sum_probs=210.9

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      .......|.++|.++.|+.+|.+|++++ |+++.|||..++...  +.+. -|.....++.|..+..+..+ +.|     
T Consensus       268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~--q~f~-~~s~~~lDVdW~~~~~F~ts-~td-----  338 (524)
T KOG0273|consen  268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK--QQFE-FHSAPALDVDWQSNDEFATS-STD-----  338 (524)
T ss_pred             hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE--Eeee-eccCCccceEEecCceEeec-CCC-----
Confidence            3456678999999999999999999999 999999998776665  4443 46666678888776665554 444     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC----
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG----  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----  227 (368)
                      +.|+|+.+....++.++. |.+.|.++.|+|.+.+++   .|++++||.+....+...+..|...|..+.|+|.|.    
T Consensus       339 ~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n  418 (524)
T KOG0273|consen  339 GCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN  418 (524)
T ss_pred             ceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCC
Confidence            999999999999999998 999999999999999999   699999999998889999999999999999999763    


Q ss_pred             ---eEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc
Q 017642          228 ---SLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (368)
Q Consensus       228 ---~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (368)
                         ...++. .+.|++|++|+.. +.++..+..|..+|++++|+|+|+|+|+|+.||. |.||++++++.++.+.+   .
T Consensus       419 ~~~~~~l~s-as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~~---~  493 (524)
T KOG0273|consen  419 PNMNLMLAS-ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKTGKLVKSYQG---T  493 (524)
T ss_pred             CcCCceEEE-eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEeccccchheeEeecC---C
Confidence               234444 5679999997754 5778889999999999999999999999999999 99999999999999885   5


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +.|..++|+.+|..|..+-.|+.+++-|++
T Consensus       494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            679999999999999999899999999985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=6.2e-32  Score=224.65  Aligned_cols=243  Identities=12%  Similarity=0.178  Sum_probs=206.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ...|..|.|.|+|+.|++|+ .+.+.+|+.....-+  ..+. .|...|.++.|+.++.++++++.+     |.|++|+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--tilQ-aHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp  167 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TILQ-AHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP  167 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHhh-hhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence            44899999999999999999 555999996433322  2233 899999999999999999999998     99999996


Q ss_pred             CCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      +... ++.+.  |...|++++|+|+...++   .||+|+|||....+..+.+.+|.-.|.+++|+|...  +++ +|+.|
T Consensus       168 nmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Lia-sgskD  243 (464)
T KOG0284|consen  168 NMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIA-SGSKD  243 (464)
T ss_pred             chhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeE-EccCC
Confidence            6543 44444  569999999999665555   699999999998888888999999999999999876  344 58899


Q ss_pred             CeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC-CC
Q 017642          239 GQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQ  316 (368)
Q Consensus       239 g~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~  316 (368)
                      ..|++|+. ++.++.++.+|+..|..+.|++++++|++++.|.. ++++|+++.+.++.+++  |...|+++.|+|- ..
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES  320 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence            99999775 45888999999999999999999999999999999 99999999999999998  8889999999994 56


Q ss_pred             EEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          317 WLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      +|.+|+.||.|..|.+...++....+
T Consensus       321 lftsgg~Dgsvvh~~v~~~~p~~~i~  346 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVGLEEPLGEIP  346 (464)
T ss_pred             ceeeccCCCceEEEeccccccccCCC
Confidence            88899999999999998665555444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.4e-29  Score=225.58  Aligned_cols=242  Identities=18%  Similarity=0.358  Sum_probs=204.2

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ....+|..++|+..|.+||.|+.+  .+-||++....-++.++   +|...+.++.+++++..+++|++|     |+|+|
T Consensus       305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaTG~eD-----gKVKv  376 (893)
T KOG0291|consen  305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIATGAED-----GKVKV  376 (893)
T ss_pred             cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEeccCC-----CcEEE
Confidence            345689999999999999999944  59999998766665443   889999999999999999999998     99999


Q ss_pred             EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-CCeeEEEEecCCCeEEEEeec
Q 017642          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ||...+-|..+|. |...|+.+.|+..++.++   .||+|+.||+...+..+++..+. ....+++..|.|.   +++.|
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe---lV~AG  453 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE---LVCAG  453 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC---EEEee
Confidence            9999999999999 999999999999999888   69999999999999999986533 2345677777776   44446


Q ss_pred             CCCC-eEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEe
Q 017642          236 LQKG-QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       236 ~~dg-~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s  312 (368)
                      +.|. .|.+|.... +.+..+.+|+++|.+++|+|+|..|++++.|.+ ||+||+-... .+.++.   +...+..++|+
T Consensus       454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfr  529 (893)
T KOG0291|consen  454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFR  529 (893)
T ss_pred             ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEc
Confidence            6554 567788665 566678999999999999999999999999999 9999987543 344555   45579999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      |||+-|++++.||.|.+||++...+.-
T Consensus       530 PdG~elaVaTldgqItf~d~~~~~q~~  556 (893)
T KOG0291|consen  530 PDGKELAVATLDGQITFFDIKEAVQVG  556 (893)
T ss_pred             CCCCeEEEEEecceEEEEEhhhceeec
Confidence            999999999999999999998876653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.6e-30  Score=227.05  Aligned_cols=249  Identities=14%  Similarity=0.188  Sum_probs=220.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ..|.+.|-++.|+|...+++++- .+.|.|||.++...+  +.+. -....+.+..|-....++++|++|     ..|+|
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfe-V~~~PvRa~kfiaRknWiv~GsDD-----~~IrV   81 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFE-VSEVPVRAAKFIARKNWIVTGSDD-----MQIRV   81 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeee-ecccchhhheeeeccceEEEecCC-----ceEEE
Confidence            34888999999999999998888 777999998876665  5554 567778888888899999999998     99999


Q ss_pred             EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      |+.++++.+..|. |.+-|++++.+|..-+++   .|-.|++||-+.+ .+.+++++|..-|..++|.|.....+ + ++
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF-a-S~  159 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF-A-SA  159 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce-e-ee
Confidence            9999999999999 999999999999988888   4789999999764 78889999999999999999877644 3 47


Q ss_pred             CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCC--CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g--~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                      +-|++|++|.... .+..++++|...|+|+.+-+-|  .+|++|++|.. |+|||..+..|++++.+  |...|..+.|+
T Consensus       160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~fh  236 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFFH  236 (794)
T ss_pred             eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEec
Confidence            8999999998765 5677899999999999998755  49999999999 99999999999999999  77899999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  343 (368)
                      |.=.++++|++||++|||+-.+-+.+...+-
T Consensus       237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~  267 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNY  267 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcceehhhhhhc
Confidence            9999999999999999999988877766553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.8e-29  Score=216.35  Aligned_cols=250  Identities=16%  Similarity=0.210  Sum_probs=198.9

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ...+.|..-|+|+.|+|||+++++.+ |+.+.+||=.+++......-...|...+.++.|+|+...+++.+.|     .+
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt  258 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KT  258 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ce
Confidence            45678999999999999999999988 9999999988777664433224789999999999999999999998     99


Q ss_pred             EEEEeCCCCcEEEEE-------------------------------------------e-cCCceeEEEEeeCccEEE--
Q 017642          158 VMIWDDHQSRCIGEL-------------------------------------------S-FRSEVRSVKLRRDRIIVV--  191 (368)
Q Consensus       158 i~vwd~~~~~~~~~~-------------------------------------------~-~~~~v~~~~~~~~~~~l~--  191 (368)
                      ++|||+.+.++++++                                           . |...|+++..++++.++.  
T Consensus       259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG  338 (603)
T ss_pred             EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence            999999887655443                                           2 677899999999999888  


Q ss_pred             -eCCcEEEEEcCCCeEE-----------EEEeccC---------------------------------------------
Q 017642          192 -LEQKIFVYNFADLKLL-----------HQIETIA---------------------------------------------  214 (368)
Q Consensus       192 -~d~~i~vwd~~~~~~~-----------~~~~~~~---------------------------------------------  214 (368)
                       .||.|.-||..+|..-           ..+....                                             
T Consensus       339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~  418 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG  418 (603)
T ss_pred             ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence             6999999998665311           0010000                                             


Q ss_pred             -------------------------CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce---eeeeeccCcceEEEEE
Q 017642          215 -------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFAL  266 (368)
Q Consensus       215 -------------------------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~~~~~i~~v~~  266 (368)
                                               ....+++++|+++.  ++. |++|+.|+|+...+..   ...+..|.++|+++++
T Consensus       419 ~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~--vaV-GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay  495 (603)
T KOG0318|consen  419 TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE--VAV-GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY  495 (603)
T ss_pred             EEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE--EEE-ecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence                                     01124566777764  333 7799999998777633   3346789999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       267 sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +||+.|||+|...+. +.+||+.+.+.. .-.-..|.+.|.+|+|+|+..++|+|+.|..|.||+++.+...
T Consensus       496 Spd~~yla~~Da~rk-vv~yd~~s~~~~-~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRK-VVLYDVASREVK-TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             CCCCcEEEEeccCCc-EEEEEcccCcee-cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence            999999999999999 999999988763 3232338899999999999999999999999999999887654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3e-30  Score=202.97  Aligned_cols=253  Identities=16%  Similarity=0.223  Sum_probs=207.7

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~  156 (368)
                      ....+|...|.+++|+-+|..|++|+ |+.+.+|+++........... +|...+-.++|++. ...+++.+.|     .
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~d-----k   87 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGD-----K   87 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCC-----c
Confidence            44568899999999999999999999 999999999887555444443 67777888888653 2233444443     8


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +|++||++.+++...+...+.-.-+.|+|+|.+++   .|..|...|.++.+.....+ ....+..++|+-+++ ++++.
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd-~Fflt  165 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND-LFFLT  165 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC-EEEEe
Confidence            99999999999999999777777889999999888   57899999999887766654 344667788985554 45555


Q ss_pred             ecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          234 PGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       234 ~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                      +|  .|.|.| --...+++..+++|.....||.|+|+|+|+|+|+.|.. +.+||+...-+++.+..  +.-+|..+.|+
T Consensus       166 ~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS  240 (313)
T KOG1407|consen  166 NG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFS  240 (313)
T ss_pred             cC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEec
Confidence            44  689998 33466888999999999999999999999999999999 99999999999999988  78899999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      .||++||++++|..|-|=++++|.+.-+.+-.
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEEeecc
Confidence            99999999999999999999999877655443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=5.9e-29  Score=214.56  Aligned_cols=248  Identities=21%  Similarity=0.336  Sum_probs=209.6

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|...|.+++|+|++++|++++ ++.+++|++...+..  ..+. .+...+..+.|.+++..+++++.+     +.|+
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~   76 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLK-GHTGPVRDVAASADGTYLASGSSD-----KTIR   76 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEe-cCCcceeEEEECCCCCEEEEEcCC-----CeEE
Confidence            347999999999999999999999 888999999876543  3333 566677789999988777777766     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      +||+.+++.+..+. |...+.++.|++++.+++  . ++.|++||+++++....+..|...+.++.|++++..  +++ +
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-~  153 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VAS-S  153 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE--EEE-E
Confidence            99999888888887 788999999999987777  3 899999999989988888888889999999999653  333 5


Q ss_pred             CCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      +.++.+++|+.. .+....+..|...+.++.|+|+++.|++++.++. |++||+.+++.+..+..  |...+.++.|+++
T Consensus       154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~  230 (289)
T cd00200         154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPD  230 (289)
T ss_pred             cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCC
Confidence            569999998876 4666777888889999999999999999999999 99999999988888865  6779999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          315 AQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      +.++++++.||.|++||+.+++......
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence            8899888889999999998766544333

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.1e-29  Score=231.77  Aligned_cols=240  Identities=19%  Similarity=0.311  Sum_probs=208.5

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|...|.+++|+|+|+++++++ |..|+|||+.. .....+.+. +|...+.+++|++.+..+++++.|     ++|+
T Consensus       199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~-~~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D-----~tvr  271 (456)
T KOG0266|consen  199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD-DGRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDD-----GTVR  271 (456)
T ss_pred             ccccccceeeeEECCCCcEEEEecCCceEEEeeccC-CCeEEEEec-CCCCceEEEEecCCCCEEEEecCC-----CcEE
Confidence            378999999999999999999999 88899999932 333346675 999999999999999999999998     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe--EEEEEeccCCC--eeEEEEecCCCeEEE
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSLVL  231 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l  231 (368)
                      |||+++++++..+. |.+.|.+++|++++.+++   .|+.|++||+.++.  +...+..+...  +..+.|+|++++++.
T Consensus       272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence            99999999999999 999999999999999998   59999999999998  56677665555  899999999997543


Q ss_pred             EeecCCCCeEEEEecC-cceeeeeeccCcc---eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC-cccE
Q 017642          232 VCPGLQKGQVRVEHYA-SKRTKFIMAHDSR---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAEI  306 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~---i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~-~~~v  306 (368)
                         +..|+.+++|+.. ...+..+.+|...   +.+...++.++++++|+.|+. |++||+.++..+..+.+  | ...+
T Consensus       352 ---~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~--h~~~~~  425 (456)
T KOG0266|consen  352 ---ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEG--HSKAAV  425 (456)
T ss_pred             ---ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcC--CCCCce
Confidence               5579999999888 5667777887764   444556778999999999999 99999999999989988  6 7889


Q ss_pred             EEEEEecCCCEEEEEe--CCCeEEEEEcc
Q 017642          307 YSLAFSSNAQWLAVSS--DKGTVHVFNLK  333 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s--~dg~i~iwd~~  333 (368)
                      ..+.+++...++++++  .|+.|++|..+
T Consensus       426 ~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  426 SDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999999999988  78999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.1e-30  Score=214.21  Aligned_cols=249  Identities=16%  Similarity=0.218  Sum_probs=195.3

Q ss_pred             CCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeCCeEEEEecCCCC
Q 017642           74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (368)
Q Consensus        74 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  151 (368)
                      +..+..+...|.+.|+.+.||++|++||+++ |.+..+|.+..... .+..++. +|...|..+.|+|+..++++++.+ 
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~-  290 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFD-  290 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCch-
Confidence            3445677889999999999999999999999 88899999865544 3345565 899999999999999999999987 


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEec--CCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-CCeeEEEEecC
Q 017642          152 QYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQG  225 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~  225 (368)
                          ..+.+||+.+|.....+.+  ...+.+++|.|||..++   .|++|..||+. |+.+...++-. ..|.++++.+|
T Consensus       291 ----e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  291 ----EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             ----HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCC
Confidence                8899999999999999884  48899999999998877   58999999984 44444444322 35788999999


Q ss_pred             CCeEEEEeecCCCCeEEEEecCcc------------------------------------------eeeeeeccCcc--e
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYASK------------------------------------------RTKFIMAHDSR--I  261 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~~------------------------------------------~~~~~~~~~~~--i  261 (368)
                      |+.+++++   .|..|++++...+                                          .+..+.+|...  |
T Consensus       366 gk~vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi  442 (519)
T KOG0293|consen  366 GKYVLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI  442 (519)
T ss_pred             CcEEEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence            99866654   4666666443321                                          12223344332  2


Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCC
Q 017642          262 ACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       262 ~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~  335 (368)
                      -.-+|-- +..++++|++|+. |+||+..+|+++.++.+  |...|++++|+|.. .++|++++||+||||.....
T Consensus       443 IrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  443 IRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--CcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            2222322 3468999999999 99999999999999998  88999999999955 57899999999999987654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=9.3e-30  Score=204.00  Aligned_cols=241  Identities=14%  Similarity=0.155  Sum_probs=206.5

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP  154 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~  154 (368)
                      -.-...+|.++|..+.|++|+..|++++ |+.|+.||+++++..  +.+. .|...+..+.....+. .+.+++.|    
T Consensus        82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~--rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD----  154 (338)
T KOG0265|consen   82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI--RKHK-GHTSFVNSLDPSRRGPQLVCSGSDD----  154 (338)
T ss_pred             ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee--ehhc-cccceeeecCccccCCeEEEecCCC----
Confidence            3445569999999999999999999888 999999999988877  4454 6777777777665554 55666666    


Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                       +++++||+++.+.++++..+..++++.|..++..+.   .|+.|++||++......++.+|.+.|+.+..+++|..+  
T Consensus       155 -~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~l--  231 (338)
T KOG0265|consen  155 -GTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFL--  231 (338)
T ss_pred             -ceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcc--
Confidence             999999999999999999999999999999877666   69999999999999999999999999999999999863  


Q ss_pred             EeecCCCCeEEEEecCc-----ceeeeeeccCc----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642          232 VCPGLQKGQVRVEHYAS-----KRTKFIMAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-----~~~~~~~~~~~----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                      . +-+.|.++++|+...     +++..+.+|..    ....++|+|+++.+..|+.|.. +++||......++.+.+  |
T Consensus       232 l-snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklpG--h  307 (338)
T KOG0265|consen  232 L-SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLPG--H  307 (338)
T ss_pred             c-cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcCC--c
Confidence            3 467899999988764     45666766533    3457899999999999999999 99999988899999998  8


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       303 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      .+.|.+++|+|...+|.+++.|++|++=.
T Consensus       308 ~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  308 YGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            89999999999999999999999998743

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.2e-29  Score=196.67  Aligned_cols=243  Identities=14%  Similarity=0.181  Sum_probs=209.5

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ...+|+.+++-+.|+.+|.+|.+++ |....||--.+++..  .++. +|...|+++..+.+...+++++.|     .++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGSAD-----~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGSAD-----QTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecccc-----cee
Confidence            4568999999999999999999999 888999987666665  5565 999999999999999999999998     999


Q ss_pred             EEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e------CCcEEEEEcC-------CCeEEEEEeccCCCeeEEEEe
Q 017642          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L------EQKIFVYNFA-------DLKLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~------d~~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~~  223 (368)
                      ++||+++|+++..++....|..+.|+.+|.+++  .      .+.|.++|++       ..++...+..+...++...|.
T Consensus        77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            999999999999999999999999999998877  2      4679999997       345577777788899999999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe--
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--  299 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--  299 (368)
                      +-++.  +++ |..||.|.+|+...  ..+...+.|...|+.|++++|..++++++.|.+ -++||+.+.++++++..  
T Consensus       157 ~l~~~--ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~  232 (327)
T KOG0643|consen  157 PLGET--IIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTER  232 (327)
T ss_pred             ccCCE--EEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecc
Confidence            99985  443 88999999988775  445556789999999999999999999999999 99999987665555431  


Q ss_pred             ---------------------------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642          300 ---------------------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (368)
Q Consensus       300 ---------------------------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  328 (368)
                                                                         ..|-++|++++|+|+|+..++|++||.|+
T Consensus       233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR  312 (327)
T KOG0643|consen  233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR  312 (327)
T ss_pred             cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence                                                               12678999999999999999999999999


Q ss_pred             EEEccC
Q 017642          329 VFNLKV  334 (368)
Q Consensus       329 iwd~~~  334 (368)
                      +..++.
T Consensus       313 ~h~Fd~  318 (327)
T KOG0643|consen  313 LHHFDS  318 (327)
T ss_pred             EEEecc
Confidence            987653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=227.92  Aligned_cols=247  Identities=17%  Similarity=0.268  Sum_probs=195.5

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC----------------------------c-c---------
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----------------------------E-I---------  119 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----------------------------~-~---------  119 (368)
                      .+...|.+.|+++.||+||+|||+|+ |+.|+||.+...+                            . .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            34448999999999999999999999 8889999986500                            0 0         


Q ss_pred             ------e--------------EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCcee
Q 017642          120 ------F--------------RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR  179 (368)
Q Consensus       120 ------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~  179 (368)
                            .              ...| .+|...|+++.|+.++.+|.+ +.|     .+|+||++...+|++.|.|..-|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~fLLSS-SMD-----KTVRLWh~~~~~CL~~F~HndfVT  413 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNNFLLSS-SMD-----KTVRLWHPGRKECLKVFSHNDFVT  413 (712)
T ss_pred             cccCCccccCCCccccccccchhhh-hccchhheecccccCCeeEec-ccc-----ccEEeecCCCcceeeEEecCCeeE
Confidence                  0              0001 478889999999988776555 455     999999999999999999999999


Q ss_pred             EEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee--
Q 017642          180 SVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--  253 (368)
Q Consensus       180 ~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~--  253 (368)
                      |++|+| |.++++   .|++|+||++...+.+.... ...-|++++|.|||+..++   |+.+|.+++++..+..+..  
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEee
Confidence            999999 566776   69999999998877665554 3478999999999986443   7799999997766633321  


Q ss_pred             -eecc------CcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          254 -IMAH------DSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       254 -~~~~------~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                       +..|      ...|+.+.|.|... .|++.+.|.. |||+|.++.+++..|++......-....|+.||++|+++++|.
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence             1111      22799999997443 5777788888 9999999999999999764445556788999999999999999


Q ss_pred             eEEEEEccCCCC
Q 017642          326 TVHVFNLKVNSG  337 (368)
Q Consensus       326 ~i~iwd~~~~~~  337 (368)
                      .|+||++.....
T Consensus       569 ~VYiW~~~~~~~  580 (712)
T KOG0283|consen  569 WVYIWKNDSFNS  580 (712)
T ss_pred             eEEEEeCCCCcc
Confidence            999999865544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=3.2e-31  Score=216.45  Aligned_cols=234  Identities=14%  Similarity=0.300  Sum_probs=195.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .....|+|+.+.  ...+++|. |++|+|||.+.....  +.+. +|...++++.|...  .+++|+.|     .+|++|
T Consensus       195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqyd~r--viisGSSD-----sTvrvW  262 (499)
T KOG0281|consen  195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQYDER--VIVSGSSD-----STVRVW  262 (499)
T ss_pred             ccCCceEEEEec--chhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeeccce--EEEecCCC-----ceEEEE
Confidence            355689999984  45788888 999999998766655  5565 99999999999765  77888887     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCe---EEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      |+++|+++.++- |.+.|..+.|+..-..-. .|.+|.+||+....   +.+.+.+|...|+.+.|+.  +  +++ +++
T Consensus       263 Dv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIV-sAS  337 (499)
T KOG0281|consen  263 DVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIV-SAS  337 (499)
T ss_pred             eccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEE-Eec
Confidence            999999999987 899999999986433333 69999999996643   3456678999999888753  3  344 366


Q ss_pred             CCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          237 QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       237 ~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      .|.+|++|+.+. ..++++.+|...|.|+.+  .|+++++|+.|.+ |++||+..|.+++.+.+  |..-|.++.|.  .
T Consensus       338 gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRFd--~  410 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRFD--N  410 (499)
T ss_pred             CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheeec--C
Confidence            799999988765 778889999999999988  7899999999999 99999999999999998  88899999995  5


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          316 QWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +.+++|+.||+|+|||+..+.....
T Consensus       411 krIVSGaYDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  411 KRIVSGAYDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             ceeeeccccceEEEEecccccCCcc
Confidence            7899999999999999988766543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.97  E-value=7.1e-28  Score=198.52  Aligned_cols=244  Identities=39%  Similarity=0.690  Sum_probs=214.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...+..+.|+.+...|..|+..+.++|+.+..+......   .....++.+.|+...+++++..+-     +.+++++++
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~---~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD---TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHFK   76 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc---CCCeEEEEeecccceeEEEecCCC-----ceEEEEEcc
Confidence            456788889999999999999999999998776642222   577889999999999999998654     789999999


Q ss_pred             CCcEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEecc-CCCeeEEEEecCCCeEEEEeecCC-CCeEE
Q 017642          165 QSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ-KGQVR  242 (368)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~g~~-dg~i~  242 (368)
                      .+..++++.....|.++.++.+...++....|+|||+++.+.++++... .++-..++++++....++++.++. .|.|.
T Consensus        77 k~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             cCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            9999999999999999999998888887777999999999999998765 556667888888887788886654 58899


Q ss_pred             EEe-cCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          243 VEH-YASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       243 i~~-~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      +|+ .+.+.+..+.+|++.+.+++|+++|.+||++++.|+.||||.+.+|+.+++|+++.....|.+++|+||+++|++.
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            955 4558888899999999999999999999999999999999999999999999998777789999999999999999


Q ss_pred             eCCCeEEEEEccCCC
Q 017642          322 SDKGTVHVFNLKVNS  336 (368)
Q Consensus       322 s~dg~i~iwd~~~~~  336 (368)
                      +..++|+||.+++..
T Consensus       237 S~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  237 SNTETVHIFKLEKVS  251 (391)
T ss_pred             cCCCeEEEEEecccc
Confidence            999999999998876

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=192.74  Aligned_cols=220  Identities=16%  Similarity=0.275  Sum_probs=187.6

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      +.....+|...|+++.|..+|+++++|+ |+.++|||+......  +.+  .+...|.++..+|+..-++++..+     
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q--R~~--~~~spVn~vvlhpnQteLis~dqs-----  145 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--RNY--QHNSPVNTVVLHPNQTELISGDQS-----  145 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc--hhc--cCCCCcceEEecCCcceEEeecCC-----
Confidence            4456678999999999999999999999 778999999874443  566  566889999999999999999988     


Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC------eEEEEEeccCCCeeEEEEec
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL------KLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~  224 (368)
                      |.|++||+.+..+...+-  ....|.++...+||..++   ..|..++|++-+.      +++..++.|.+.+..+.++|
T Consensus       146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence            999999999988877775  567899999999999998   5789999999553      45667888999999999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                      |+++  |++ ++.|.+++||..+.-  ....+++|...+..++||.||+||++|+.|+. +++||+..++.++.+.+  |
T Consensus       226 d~k~--lat-~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~-~rlW~~~~~k~v~qy~g--h  299 (311)
T KOG0315|consen  226 DVKY--LAT-CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT-ARLWDLSAGKEVRQYQG--H  299 (311)
T ss_pred             CCcE--EEe-ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc-eeecccccCceeeecCC--c
Confidence            9985  554 567999999988774  44567899999999999999999999999999 99999999999999988  4


Q ss_pred             cccEEEEEE
Q 017642          303 RAEIYSLAF  311 (368)
Q Consensus       303 ~~~v~~l~~  311 (368)
                      .....+++.
T Consensus       300 ~K~~vc~~l  308 (311)
T KOG0315|consen  300 HKAAVCVAL  308 (311)
T ss_pred             ccccEEEEe
Confidence            445555554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=6.1e-28  Score=208.20  Aligned_cols=238  Identities=21%  Similarity=0.342  Sum_probs=204.4

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|...+..+.|++++++|++++ ++.|++|++...+..  ..+. .+...+.++.+.+++.++++++.+     +.|
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i  117 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV--RTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KTI  117 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce--EEEe-ccCCcEEEEEEcCCCCEEEEecCC-----CeE
Confidence            4456788899999999999998888 888999999865444  3343 566688999999987778877766     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      ++||+.+++....+. |...+.+++|++++.+++  . ++.|++||+++++.+..+..+...+.++.|+++++.+++   
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---  194 (289)
T cd00200         118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS---  194 (289)
T ss_pred             EEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEE---
Confidence            999999898888888 888999999999988877  3 899999999999888888888889999999999976443   


Q ss_pred             cCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       235 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      ++.++.+++|+... ..+..+..|...+.++.|++++.++++++.||. |++||+.+++.+..+..  |...|.+++|++
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~  271 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSP  271 (289)
T ss_pred             ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECC
Confidence            33599999988764 555666688889999999999889998888999 99999999998888885  778999999999


Q ss_pred             CCCEEEEEeCCCeEEEEE
Q 017642          314 NAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd  331 (368)
                      ++++|++++.||.|++|+
T Consensus       272 ~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         272 DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCEEEEecCCCeEEecC
Confidence            999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=5.1e-28  Score=236.62  Aligned_cols=240  Identities=15%  Similarity=0.217  Sum_probs=194.1

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc------ceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE------IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQY  153 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~  153 (368)
                      ..|.+.|.+++|+|+|++||+|+ |+.|+||++.....      .....+  .+...+.++.|++ ....+++++.|   
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~D---  554 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFE---  554 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCC---
Confidence            34889999999999999999999 88899999753210      011122  2344677788875 35567888877   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCC
Q 017642          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVG  227 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~  227 (368)
                        |.|++||+.+++.+..+. |.+.|++++|++ ++.+++   .|+.|++||+++++.+..+..+ ..+.++.|.+ ++.
T Consensus       555 --g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~  631 (793)
T PLN00181        555 --GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR  631 (793)
T ss_pred             --CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence              999999999999988887 999999999997 677766   5899999999999888888654 5788888865 454


Q ss_pred             eEEEEeecCCCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC------CceeEeeEe
Q 017642          228 SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRR  299 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~------~~~~~~~~~  299 (368)
                      .  +++ |+.||.|++|+....  ....+.+|...|.++.|. ++.+|++++.|+. |+|||+..      .+.+..+.+
T Consensus       632 ~--lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        632 S--LAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             E--EEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence            3  443 778999999987653  356678999999999997 7789999999999 99999974      356777776


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                        |...+..++|++++.+|++|+.|+.|++|+...+.
T Consensus       707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence              77889999999999999999999999999986553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.1e-29  Score=222.11  Aligned_cols=250  Identities=11%  Similarity=0.154  Sum_probs=210.5

Q ss_pred             CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCC-eEEEEecCCC
Q 017642           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCN-ILALVGGGPD  150 (368)
Q Consensus        75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d  150 (368)
                      .+..++..+|++.|.++....+|-+|++|+ |+.+++|.+++....  ..... .+|...+.+++.+.. -.++++++.|
T Consensus       355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D  433 (775)
T KOG0319|consen  355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQD  433 (775)
T ss_pred             CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCC
Confidence            444568899999999999777889999999 999999998544332  11222 267777777777543 3577888887


Q ss_pred             CCCCCCcEEEEeCCCCc-----EEE----EEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642          151 PQYPLNKVMIWDDHQSR-----CIG----ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK  217 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~-----~~~----~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v  217 (368)
                           +++++|++...+     .+.    +.. |...|++++++|+.++++   .|.+.+||+++..+...++.+|...+
T Consensus       434 -----~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv  508 (775)
T KOG0319|consen  434 -----CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV  508 (775)
T ss_pred             -----ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccce
Confidence                 999999987622     111    112 899999999999999999   69999999999999999999999999


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      .++.|++..+-  ++ +++.|++|+||.... .+++++.+|...|..+.|-.+|+.|++++.||- |+||++++++++.+
T Consensus       509 w~V~Fs~~dq~--la-T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~t  584 (775)
T KOG0319|consen  509 WCVSFSKNDQL--LA-TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMT  584 (775)
T ss_pred             EEEEeccccce--eE-eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhh
Confidence            99999999873  44 367899999998765 788999999999999999999999999999999 99999999999999


Q ss_pred             eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +..  |...|++++.++.+.++++|+.||.|.+|.=.+.+
T Consensus       585 lD~--H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  585 LDA--HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             hhh--ccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence            998  88899999999999999999999999999654443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-29  Score=224.18  Aligned_cols=242  Identities=15%  Similarity=0.218  Sum_probs=211.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ....|-.++|+|...+++++- .+.|++||..-+...  ..|. .|...|..+.|++..-++++|++|     ..|++|+
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFVSGGDD-----ykIkVWn   79 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFVSGGDD-----YKIKVWN   79 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEEecCCc-----cEEEEEe
Confidence            345788999999999999998 777999998765555  4565 899999999999999999999998     9999999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      .++.+++.++. |-+.|+.+.|++.--+++   .|.+|+||+..+++++..+.+|..-|.|..|+|..+.  ++ +++-|
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl--IV-SaSLD  156 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL--IV-SASLD  156 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce--EE-Eeccc
Confidence            99999999988 999999999999999888   5889999999999999999999999999999998773  33 58899


Q ss_pred             CeEEEEecCcc------------------------------eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          239 GQVRVEHYASK------------------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       239 g~i~i~~~~~~------------------------------~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      .+||||+..+-                              ....+++|...|+-++|+|.-.++++|++|+. |++|.+
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm  235 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM  235 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence            99999997641                              01346789999999999999999999999999 999998


Q ss_pred             CCCce--eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          289 LDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       289 ~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      ...+.  +-+.++  |.+.|.++-|+|...++++.|+|++|+|||+++.+...
T Consensus       236 netKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~  286 (1202)
T KOG0292|consen  236 NETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ  286 (1202)
T ss_pred             ccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence            75443  334556  78899999999999999999999999999998876543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.8e-28  Score=218.66  Aligned_cols=241  Identities=17%  Similarity=0.304  Sum_probs=206.1

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|.++|..++|+|++.++++|+ |..|+||+....++.  .++. +|-..|..+.|+...-+++++++|     .+|
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--ftL~-GHlDYVRt~~FHheyPWIlSASDD-----QTI  117 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--FTLL-GHLDYVRTVFFHHEYPWILSASDD-----QTI  117 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--hhhc-cccceeEEeeccCCCceEEEccCC-----CeE
Confidence            4568999999999999999999999 666999999877766  4454 899999999999999999999998     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe-----------------------------
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-----------------------------  205 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~-----------------------------  205 (368)
                      +||+..+++++..+. |...|.|..|+|....++   .|.+|+|||+...+                             
T Consensus       118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV  197 (1202)
T KOG0292|consen  118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV  197 (1202)
T ss_pred             EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence            999999999999999 999999999999777777   69999999984311                             


Q ss_pred             EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee---eeeeccCcceEEEEECCCCCEEEEEeCCCcE
Q 017642          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTL  282 (368)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~---~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~  282 (368)
                      ..+.+++|...|+-++|+|.-.   ++.+|+.|..|++|..+....   .+..+|.+.|.++-|+|...++++.++|++ 
T Consensus       198 VK~VLEGHDRGVNwaAfhpTlp---liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-  273 (1202)
T KOG0292|consen  198 VKHVLEGHDRGVNWAAFHPTLP---LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-  273 (1202)
T ss_pred             eeeeecccccccceEEecCCcc---eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-
Confidence            1245678888999999998765   344699999999998877554   346789999999999999999999999999 


Q ss_pred             EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |+|||+...+.+++++.  .....+.++-+|..+++++|- |+-+.||.++..
T Consensus       274 irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleRE  323 (1202)
T KOG0292|consen  274 IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERE  323 (1202)
T ss_pred             EEEEecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEccc
Confidence            99999999999999987  556889999999998887764 444777777643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-26  Score=187.51  Aligned_cols=248  Identities=13%  Similarity=0.205  Sum_probs=192.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      -.+.|+++.|+++|.+|++++ |+.++|||...+......... .......++...++.....+...|     .+|+..+
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~~~i~sStk~d-----~tIryLs   86 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSNTVIHSSTKED-----DTIRYLS   86 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCceEEEccCCCC-----CceEEEE
Confidence            466899999999999999988 779999999877766433321 334555555555565555555555     8999999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      +.+.+.++.+. |...|..++.+|-+..++   .|++|++||++..++...+.....  ..++|.|.|-.  +|. +...
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLi--fA~-~~~~  161 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLI--FAL-ANGS  161 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcE--EEE-ecCC
Confidence            99999999999 999999999999776666   699999999998888777654333  45789888853  333 4444


Q ss_pred             CeEEEEecCc---ceeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc-EEEEEE
Q 017642          239 GQVRVEHYAS---KRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYSLAF  311 (368)
Q Consensus       239 g~i~i~~~~~---~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~  311 (368)
                      +.|++++.+.   ++..++.   ......+.|.|+|||++|+.+...+. +++.|.-+|..+..+......+. -.+.+|
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            5899966553   3333332   34667899999999999999999999 99999999999988887543332 257789


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  343 (368)
                      +||++++++|+.||+|++|+++++.......+
T Consensus       241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            99999999999999999999999887665444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=3.2e-27  Score=202.64  Aligned_cols=254  Identities=13%  Similarity=0.226  Sum_probs=207.9

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC-CCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-PQYPL  155 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~~~~  155 (368)
                      ..+.+.|...++-..|+|.|.|+|+|+ .+.|||||....+..+..++. .-...+.++.|+.++..++..++. ..|  
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerf--  128 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERF--  128 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccce--
Confidence            567889999999999999999999999 777999998776666666665 566677888888777666554432 123  


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      |.+.+||  +|..+.++. |...|.++.|-|..-+=+    .|+.|.+|+=.-.+...++..|..-|.++.|+|||+.  
T Consensus       129 g~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--  204 (603)
T KOG0318|consen  129 GHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--  204 (603)
T ss_pred             eEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--
Confidence            5677776  777888888 999999999999765433    6899999997777777888889999999999999985  


Q ss_pred             EEeecCCCCeEEEE-ecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-------
Q 017642          231 LVCPGLQKGQVRVE-HYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-------  299 (368)
Q Consensus       231 l~~~g~~dg~i~i~-~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-------  299 (368)
                      +++ .+.||++.++ -.+++.+..+.   +|.+.|.+++|+||++.+++++.|.+ ++|||+.+.+++.++..       
T Consensus       205 Fat-~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dq  282 (603)
T KOG0318|consen  205 FAT-AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQ  282 (603)
T ss_pred             EEE-ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhce
Confidence            444 4469999994 46667777887   89999999999999999999999999 99999987665554331       


Q ss_pred             ----------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          300 ----------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       300 ----------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                                                        ..|...|+++..++|+++|++|+.||.|.-|+..++...+-
T Consensus       283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL  357 (603)
T ss_pred             EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence                                              12678899999999999999999999999999999877644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=5.1e-27  Score=229.59  Aligned_cols=236  Identities=13%  Similarity=0.220  Sum_probs=194.1

Q ss_pred             CCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEE
Q 017642           84 PPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        84 h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      +...|.+++|++. +.+|++++ |+.|+|||+.+.+..  ..+. .|...|.++.|++ ++..+++++.|     +.|++
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~i  602 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGSDD-----GSVKL  602 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEE
Confidence            4568999999874 78899888 888999999876544  4454 7888999999986 67788888888     99999


Q ss_pred             EeCCCCcEEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCe-EEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          161 WDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ||+.++..+..+.+...|.++.|++ ++.+++   .|+.|++||+++++ .+..+.+|...|..+.|. ++..  +++ +
T Consensus       603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~--lvs-~  678 (793)
T PLN00181        603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST--LVS-S  678 (793)
T ss_pred             EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE--EEE-E
Confidence            9999999998888777899999964 677777   59999999998765 466777899999999997 5553  443 6


Q ss_pred             CCCCeEEEEecCc-------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe---------
Q 017642          236 LQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---------  299 (368)
Q Consensus       236 ~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~---------  299 (368)
                      +.|+.|++|+...       ..+..+.+|...+.+++|++++.+|++|+.|+. |+||+......+..+..         
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCccccc
Confidence            6899999998752       456778899999999999999999999999999 99999876554433221         


Q ss_pred             --ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          300 --GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       300 --~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                        ..+...|.+++|++++..|++|+.||.|+||++
T Consensus       758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence              123457999999999999999999999999996

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-27  Score=209.61  Aligned_cols=246  Identities=14%  Similarity=0.169  Sum_probs=207.0

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....+.+.|+++.|+++|.+|++|. ++.|.|||....+..  ..+...|...+-+++|.  ...+.+|+.+     +.
T Consensus       211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGsr~-----~~  281 (484)
T KOG0305|consen  211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGSRD-----GK  281 (484)
T ss_pred             EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEecCC-----Cc
Confidence            33444588999999999999999999 777999998876665  44542388888899997  5566777777     99


Q ss_pred             EEEEeCCCCcEEEE-Ee-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          158 VMIWDDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       158 i~vwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      |..+|++..+.... +. |...|..++|++|+.+++   .|+.+.|||....+....+..|...|.+++|+|....++..
T Consensus       282 I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs  361 (484)
T KOG0305|consen  282 ILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT  361 (484)
T ss_pred             EEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE
Confidence            99999998876555 55 999999999999999999   58999999998888888999999999999999999886666


Q ss_pred             eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEE--eCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      ..|+.|+.|++|+........-..-...|.+|.|++..+-|+++  ..++. |.||+..+.+.+..+.+  |...|..++
T Consensus       362 GGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la  438 (484)
T KOG0305|consen  362 GGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLA  438 (484)
T ss_pred             cCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEE
Confidence            66788999999887765544444456779999999998766554  34556 99999999999999988  888999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ++|||..+++|+.|.++++|++-...
T Consensus       439 ~SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  439 LSPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             ECCCCCEEEEecccCcEEeccccCCC
Confidence            99999999999999999999997753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=8.9e-28  Score=213.98  Aligned_cols=244  Identities=18%  Similarity=0.258  Sum_probs=210.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc----------------------------------
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----------------------------------  125 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~----------------------------------  125 (368)
                      ...+|...|.+++++.+...+++|..+.++||+.++.++.......                                  
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~  447 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV  447 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence            3468999999999999999999998889999998876654221100                                  


Q ss_pred             ---cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-----Cc--E------EEEEecCCceeEEEEeeCccE
Q 017642          126 ---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-----SR--C------IGELSFRSEVRSVKLRRDRII  189 (368)
Q Consensus       126 ---~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-----~~--~------~~~~~~~~~v~~~~~~~~~~~  189 (368)
                         ..|...++.++..+++..+++++.|     .+|++||..-     |.  .      .++++....|.|+.++||+++
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCC-----cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence               4677788888889999999999988     9999999641     11  1      133446789999999999999


Q ss_pred             EE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEE
Q 017642          190 VV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFA  265 (368)
Q Consensus       190 l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~  265 (368)
                      ++   .|.+++||-+.+.+....+.+|.-+|.++.++||++.  ++ +|+.|..|+||-.+- .+.+.+.+|...|.++.
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl--iv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL--IV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe--EE-eccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            99   6999999999999999999999999999999999983  33 588999999998875 66778999999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      |.|....+.+++.|+. |+-||-.+.+.++.+.+  |...|++++.+|+|.++++++.|.+|++|.-..
T Consensus       600 F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  600 FLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EcccceeEEEecCcce-EEeechhhhhhheeecc--chheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999 99999999999999998  778999999999999999999999999998766

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1e-28  Score=201.90  Aligned_cols=241  Identities=15%  Similarity=0.285  Sum_probs=193.3

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....+|++.|.|+.|.  .+.+++|+ |.+|+|||+++++..  ..+- .|...++.+.|+.+..  ++++.|     .
T Consensus       230 ~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l--~tli-hHceaVLhlrf~ng~m--vtcSkD-----r  297 (499)
T KOG0281|consen  230 LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL--NTLI-HHCEAVLHLRFSNGYM--VTCSKD-----R  297 (499)
T ss_pred             HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh--hHHh-hhcceeEEEEEeCCEE--EEecCC-----c
Confidence            34667999999999985  55889998 889999999998876  4453 7888999999987655  556666     9


Q ss_pred             cEEEEeCCCCcEE---EEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          157 KVMIWDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       157 ~i~vwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ++.+||+.....+   +.+. |...|..+.|+..  +++   .|.+|++|++.+++.++++.+|...|.|+.+.  ++  
T Consensus       298 siaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r--  371 (499)
T KOG0281|consen  298 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR--  371 (499)
T ss_pred             eeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce--
Confidence            9999998765422   2233 8889999998765  555   69999999999999999999999988877653  43  


Q ss_pred             EEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce---------eEeeEe
Q 017642          230 VLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---------LQEVRR  299 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~---------~~~~~~  299 (368)
                       ++.+|+.|.+|++|+.. +.+++.+++|+.-|.|+.|  |.+.+++|+.||. |+|||+..+..         +..+..
T Consensus       372 -lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  372 -LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVE  447 (499)
T ss_pred             -EEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEecccccCCcccccchHHHhhhh
Confidence             33469999999998766 4677889999999999999  6778999999999 99999987542         333444


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                        |.+.|..+.|.  ...+++++.|.+|.|||+.++.........
T Consensus       448 --hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~~~~~~r  488 (499)
T KOG0281|consen  448 --HSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPSAAEETR  488 (499)
T ss_pred             --ccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCccccccCC
Confidence              78899999995  567889999999999999988766444444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.7e-28  Score=192.03  Aligned_cols=242  Identities=14%  Similarity=0.183  Sum_probs=203.4

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      -+..+|.+.|+...++.+....|++. |-+-+|||.-++...  ..|  .|..-|..++|+.+...+++++.+     .-
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf--~hkhivk~~af~~ds~~lltgg~e-----kl  123 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSF--EHKHIVKAVAFSQDSNYLLTGGQE-----KL  123 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhh--hhhheeeeEEecccchhhhccchH-----HH
Confidence            35568999999999999988888888 888999998877766  556  466667888999999999999987     89


Q ss_pred             EEEEeCCCCc-EEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          158 VMIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       158 i~vwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      ++|||++..+ +..++. |.+.|+.+.|....+.++   .|++|++||.++++.++++. ...++.++.++++|+.+.++
T Consensus       124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia  202 (334)
T KOG0278|consen  124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA  202 (334)
T ss_pred             hhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe
Confidence            9999988653 456666 999999999988766665   58999999999999999986 46789999999999976655


Q ss_pred             eecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee-EeccCcccEEEEE
Q 017642          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV-RRGADRAEIYSLA  310 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~  310 (368)
                      .    .+.|.+|+... ..++.+ .....|.+..++|+...+++|++|.. ++.||..+++.+..+ ++  |.++|.|+.
T Consensus       203 ~----gssV~Fwdaksf~~lKs~-k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg--h~gpVhcVr  274 (334)
T KOG0278|consen  203 Y----GSSVKFWDAKSFGLLKSY-KMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG--HFGPVHCVR  274 (334)
T ss_pred             c----CceeEEeccccccceeec-cCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC--CCCceEEEE
Confidence            4    46788888765 333333 33456889999999999999999999 999999999998876 44  789999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |+|||...++|++||+|+||....++..
T Consensus       275 FSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  275 FSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999877665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-27  Score=207.46  Aligned_cols=233  Identities=15%  Similarity=0.247  Sum_probs=205.3

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      ..+-+|.+..|-...+++++|+ |..|+||+.++.+.+  ..|+ .|...+.++.-+|...++.++++|     -.|++|
T Consensus        53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV--~~Fe-AH~DyIR~iavHPt~P~vLtsSDD-----m~iKlW  124 (794)
T KOG0276|consen   53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV--KTFE-AHSDYIRSIAVHPTLPYVLTSSDD-----MTIKLW  124 (794)
T ss_pred             ecccchhhheeeeccceEEEecCCceEEEEecccceee--EEee-ccccceeeeeecCCCCeEEecCCc-----cEEEEe
Confidence            4456889999999999999999 666999999988877  5675 999999999999999999999998     999999


Q ss_pred             eCCCC-cEEEEEe-cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          162 DDHQS-RCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       162 d~~~~-~~~~~~~-~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      |.+.+ .+.++++ |..-|.+++|+|. ...++   .|++|+||.+.+..+..++++|...|+++.+-+.|+..++++ |
T Consensus       125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs-g  203 (794)
T KOG0276|consen  125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS-G  203 (794)
T ss_pred             eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe-c
Confidence            98765 7888888 9999999999995 44454   699999999999889999999999999999999998888886 8


Q ss_pred             CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      +.|..++||+... .+++++.+|...|..+.|+|.-.++++|++||+ +|||+..+-+....+.-  .-..+++++-.+.
T Consensus       204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--gleRvW~I~~~k~  280 (794)
T KOG0276|consen  204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--GLERVWCIAAHKG  280 (794)
T ss_pred             CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--CCceEEEEeecCC
Confidence            8999999999876 678899999999999999999999999999999 99999888777777665  3468999998888


Q ss_pred             CCEEEEEeCCCeE
Q 017642          315 AQWLAVSSDKGTV  327 (368)
Q Consensus       315 ~~~l~s~s~dg~i  327 (368)
                      ++.++.|.+.|.|
T Consensus       281 ~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  281 DGKIAVGFDEGSV  293 (794)
T ss_pred             CCeEEEeccCCcE
Confidence            8888888777754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-26  Score=187.03  Aligned_cols=241  Identities=15%  Similarity=0.245  Sum_probs=193.4

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE--EEEecCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPL  155 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~d~~~~~  155 (368)
                      -....|.+.|++++.  +|.++|+|+ |.+|+|||+......  ..+. .|...+.++.|.+...  .+.++.+|     
T Consensus        37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql--g~ll-~HagsitaL~F~~~~S~shLlS~sdD-----  106 (362)
T KOG0294|consen   37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL--GILL-SHAGSITALKFYPPLSKSHLLSGSDD-----  106 (362)
T ss_pred             ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh--ccee-ccccceEEEEecCCcchhheeeecCC-----
Confidence            345689999999997  588999999 999999999865554  3333 6788889999987765  78888888     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |.|.+|+....+++..++ |.+.|+.++++|.+++.+   .|+.+++||+-.|+.-..+... ..-..+.|+|.|+++++
T Consensus       107 G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  107 GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVV  185 (362)
T ss_pred             CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEE
Confidence            999999999999999999 999999999999999887   6999999999888765555432 23344899999998665


Q ss_pred             EeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      ..    ...|-+|......+.........+.|+.|- ++.+|++|.+|+. |++||..+..+...+..  |...|.++.+
T Consensus       186 ~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~  257 (362)
T KOG0294|consen  186 SG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIAS  257 (362)
T ss_pred             Ee----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEE
Confidence            43    356667766654443333333557777775 5668999999999 99999999999988888  8899999985


Q ss_pred             --ecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          312 --SSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       312 --sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                        .|++.+|++++.||.|+|||++...+.
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEccccccC
Confidence              467889999999999999999887443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3.2e-27  Score=210.15  Aligned_cols=249  Identities=16%  Similarity=0.246  Sum_probs=204.3

Q ss_pred             ccCCCCCEEEEEE-cCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           81 SSSPPPTLLHISF-NQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        81 ~~~h~~~v~~~~~-s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      .-+-.+.|..|+| .|+.++||+++ ...+|+|++.+..+.   .+ ++|...+.++.-...+.++++++.|     +++
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii-~GH~e~vlSL~~~~~g~llat~sKD-----~sv  389 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---II-PGHTEAVLSLDVWSSGDLLATGSKD-----KSV  389 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EE-eCchhheeeeeecccCcEEEEecCC-----ceE
Confidence            3455678888887 57788999999 556999987765554   23 3899999999966667899999998     999


Q ss_pred             EEEeCCCCc----EEEEEe-cCCceeEEEEeeCccE-EE---eCCcEEEEEcCCCe---------EEEEEeccCCCeeEE
Q 017642          159 MIWDDHQSR----CIGELS-FRSEVRSVKLRRDRII-VV---LEQKIFVYNFADLK---------LLHQIETIANPKGLC  220 (368)
Q Consensus       159 ~vwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~-l~---~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~  220 (368)
                      ++|.++.+.    ++.... |...|.+++++..+.- ++   .|+++++|++...+         +..+...|...|+++
T Consensus       390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V  469 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV  469 (775)
T ss_pred             EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence            999885442    233334 9999999999876543 33   69999999996521         111234688999999


Q ss_pred             EEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +++|+.+   |+++|++|.+.+||+... ....++.+|...|.++.|++..+.|+|++.|++ |+||.+.+..++++|.+
T Consensus       470 aia~ndk---LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  470 AIAPNDK---LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEG  545 (775)
T ss_pred             EecCCCc---eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecC
Confidence            9999987   444599999999988774 556678999999999999999999999999999 99999999999999999


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                        |...|..+.|-.+|+.|++++.||.|++|+++++.-......+
T Consensus       546 --H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  546 --HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             --ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence              8899999999999999999999999999999998776554443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-27  Score=186.08  Aligned_cols=239  Identities=15%  Similarity=0.168  Sum_probs=190.8

Q ss_pred             cCCCCCEEEEEEcCCCC-EE-EEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcE
Q 017642           82 SSPPPTLLHISFNQDHG-CF-AAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~-~l-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i  158 (368)
                      -.-.+.+..++|++... .+ ++.+|+.++|||+..... ....++ .|...|.++.|+. ++..+++++.|     ++|
T Consensus        57 ~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD-----~Ti  129 (311)
T KOG0277|consen   57 YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWD-----GTI  129 (311)
T ss_pred             eecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHH-hhhhheEEeccccccceeEEeeccC-----Cce
Confidence            34467899999998654 34 444499999999654333 234454 8899999999986 34455556888     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      ++|+...++.++++. |...|...+|+|.. .+++   .|+.+++||++.......+..|...+.++.|+.-... +++ 
T Consensus       130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~-  207 (311)
T KOG0277|consen  130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLA-  207 (311)
T ss_pred             EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc-EEE-
Confidence            999999999999998 99999999999964 4444   6999999999764444458889999999999988776 334 


Q ss_pred             ecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCce-eEeeEeccCcccEEEE
Q 017642          234 PGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSL  309 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l  309 (368)
                      +|+.|+.|++|+...  .++..+.+|.-.|+.|+|||... +|++++.|-+ ++|||...+.. +.++..  |..-+..+
T Consensus       208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~  284 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGL  284 (311)
T ss_pred             ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEecc
Confidence            588999999998776  45667889999999999999765 8999999999 99999986554 334443  78889999


Q ss_pred             EEec-CCCEEEEEeCCCeEEEEEc
Q 017642          310 AFSS-NAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       310 ~~sp-~~~~l~s~s~dg~i~iwd~  332 (368)
                      .|++ ++.++|+++.|+.++||+-
T Consensus       285 Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  285 DWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccccCceeeecccccceeeecc
Confidence            9997 5679999999999999983

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=2.9e-26  Score=188.60  Aligned_cols=250  Identities=13%  Similarity=0.159  Sum_probs=207.6

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|+..|.+++.+|+.+++++|+ |+.-.||++.++...  ..+. +|...|.++.|+-++.++++++.+     |.
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~FshdgtlLATGdms-----G~  129 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSFSHDGTLLATGDMS-----GK  129 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEEccCceEEEecCCC-----cc
Confidence            45678999999999999999999999 888999999888755  4454 899999999999999999999998     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      |+||+..++.....+. .-..+.=+.|+|.+.+++   .||.+.+|.+.++...+.+.+|..++++=.|.|+|++++.  
T Consensus       130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t--  207 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT--  207 (399)
T ss_pred             EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE--
Confidence            9999999999888886 667788899999988887   6999999999988888899999999999999999997443  


Q ss_pred             ecCCCCeEEEEecCc-ceeeeee---------------------------------------------------ccCcce
Q 017642          234 PGLQKGQVRVEHYAS-KRTKFIM---------------------------------------------------AHDSRI  261 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~-~~~~~~~---------------------------------------------------~~~~~i  261 (368)
                       |..||+|++|+... .++..+.                                                   .+...+
T Consensus       208 -gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  208 -GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             -EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence             66899999998653 1111111                                                   122223


Q ss_pred             EEEE---ECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          262 ACFA---LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       262 ~~v~---~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .+|.   |+..-.+.|+|+.||+ |.|||+...+..+.+.   |...|..+.|-+ ..+|++++.+|.|+.||.++++..
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~  361 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK  361 (399)
T ss_pred             hhhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence            3333   3334458899999999 9999999888776666   778899999998 789999999999999999999887


Q ss_pred             CCCCCC
Q 017642          339 ARSEPR  344 (368)
Q Consensus       339 ~~~~~~  344 (368)
                      -...++
T Consensus       362 ~~y~GH  367 (399)
T KOG0296|consen  362 FTYTGH  367 (399)
T ss_pred             EEEecC
Confidence            666655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2.6e-28  Score=197.94  Aligned_cols=242  Identities=15%  Similarity=0.244  Sum_probs=203.2

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc-----cCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      ++..+...-+.|..|+|||++|++|+ |+-|.+||..+++......+.     .-+...+.++.|+.+...+++|+.|  
T Consensus       207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD--  284 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD--  284 (508)
T ss_pred             heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC--
Confidence            34455667789999999999999999 888999999877654221111     1356789999999999999999998  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          153 YPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                         |.|++|.+.+|.|++.|.  |...|+++.|+.|+..+.   .|.++++.-+.+|++++.+.+|..-|+...|.++|.
T Consensus       285 ---GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~  361 (508)
T KOG0275|consen  285 ---GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH  361 (508)
T ss_pred             ---CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC
Confidence               999999999999999998  999999999999988777   589999999999999999999999999999999999


Q ss_pred             eEEEEeecCCCCeEEEEecCcc-e--------------------------------------------eeeeec---cCc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASK-R--------------------------------------------TKFIMA---HDS  259 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~-~--------------------------------------------~~~~~~---~~~  259 (368)
                      .++   +++.||+|++|+.... +                                            ++.+..   ..+
T Consensus       362 ~ii---saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG  438 (508)
T KOG0275|consen  362 HII---SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG  438 (508)
T ss_pred             eEE---EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC
Confidence            744   3567999999976421 1                                            111110   122


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ...+...+|.|.++++.++|+. ++.|.+.+|+.-..+..  |...+..++-+|..+.|++-++||.+++|.
T Consensus       439 dFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  439 DFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence            3445678999999999999999 99999999999999888  788899999999999999999999999995

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=8.8e-27  Score=187.89  Aligned_cols=244  Identities=16%  Similarity=0.217  Sum_probs=198.5

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCC----------------CcceEEEcccCCceeEEEEEEeCCeE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF----------------REIFRRDFERGGGIGVVEMLFRCNIL  142 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (368)
                      ..+.|..++.+.+|++||.++|+|+ |..|+|.|++..                .....+++. .|...|..+.|+|...
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~  185 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhh
Confidence            4568999999999999999999999 888999998621                113345555 7888899999999999


Q ss_pred             EEEecCCCCCCCCCcEEEEeCCCCcE---EEEEecCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEE---ecc
Q 017642          143 ALVGGGPDPQYPLNKVMIWDDHQSRC---IGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQI---ETI  213 (368)
Q Consensus       143 ~~~s~~~d~~~~~~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~---~~~  213 (368)
                      .++++++|     ++|++||+..-..   .+.++....|.++.|+|.|.+++  . ...+++||+++.++...-   ..|
T Consensus       186 ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  186 ILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             eEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence            99999998     9999999876433   33445778999999999999888  3 458999999998886544   357


Q ss_pred             CCCeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeee-ccC-cceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIM-AHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~-~~~-~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .+.|+++.+++.++.  .+ +|+.||.|++|+- ..+++.++. +|. ..|.+..|..+|+|+++.+.|.. +++|++.+
T Consensus       261 t~ai~~V~Ys~t~~l--Yv-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t  336 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSL--YV-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEIST  336 (430)
T ss_pred             ccceeEEEecCCccE--EE-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecC
Confidence            788999999999973  33 4889999999774 557777764 465 46899999999999999999999 99999999


Q ss_pred             CceeEeeEe-----------------------------------------------ccCcccEEEEEEecCCCEEEEEeC
Q 017642          291 GTLLQEVRR-----------------------------------------------GADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       291 ~~~~~~~~~-----------------------------------------------~~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      ++++.++.+                                               ..|.+.+..+.-||.+..+++++.
T Consensus       337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD  416 (430)
T ss_pred             CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence            888777653                                               125677788888888888888888


Q ss_pred             CCeEEEEEcc
Q 017642          324 KGTVHVFNLK  333 (368)
Q Consensus       324 dg~i~iwd~~  333 (368)
                      |..+|+|--+
T Consensus       417 D~raRFWyrr  426 (430)
T KOG0640|consen  417 DFRARFWYRR  426 (430)
T ss_pred             cceeeeeeec
Confidence            8889888643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=177.88  Aligned_cols=200  Identities=20%  Similarity=0.272  Sum_probs=174.0

Q ss_pred             EEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCC---CcEEEEEe--cCCceeEEEEeeCccEEE---e
Q 017642          122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ---SRCIGELS--FRSEVRSVKLRRDRIIVV---L  192 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~---~  192 (368)
                      +.+. +|...+..++|++. +..|++++.|     +.|++|+...   -.+...+.  |+..|+.++|+|.|++++   .
T Consensus         8 ~~~~-gh~~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    8 QKLS-GHKDRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             Eeec-CCCCcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            4454 77788999999998 8899999998     9999999874   34444554  899999999999999999   6


Q ss_pred             CCcEEEEEcCC--CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEE
Q 017642          193 EQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFAL  266 (368)
Q Consensus       193 d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~  266 (368)
                      |.++.||.-..  .+++.++++|.+.|.+++|+.+|+.  ||+ ++.|..|-||....    .+...+..|...|..+.|
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~--LAT-CSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY--LAT-CSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE--EEE-eeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            99999998653  4789999999999999999999984  554 77999999987663    566778999999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEECC---CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          267 TQDGQLLATSSTKGTLVRIFNTL---DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       267 sp~g~~l~s~~~dg~~i~iwd~~---~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +|...+|++++.|.+ |++|+-.   ..++++++.+  |...|.+++|++.|..|+++++|++++||.+.
T Consensus       159 HPt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  159 HPTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             cCCcceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            999999999999999 9999866   3467888888  77799999999999999999999999999965

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.4e-25  Score=202.81  Aligned_cols=246  Identities=11%  Similarity=0.067  Sum_probs=179.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcce-----------EEEcccCCceeEEEEEEeC-CeEEEEecCCC
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF-----------RRDFERGGGIGVVEMLFRC-NILALVGGGPD  150 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d  150 (368)
                      |-..|.....++++..+++++ +.....|+...+...+           ...+. +|...|.++.|++ +...+++++.|
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            334455555666655455444 3335556543221110           01232 7888999999998 77788888888


Q ss_pred             CCCCCCcEEEEeCCCC-------cEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCee
Q 017642          151 PQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKG  218 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~  218 (368)
                           ++|++||+.++       +.+..+. |...|.+++|+|++ .+++   .|+.|+|||+++++.+..+..|...|.
T Consensus        98 -----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         98 -----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             -----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence                 99999999765       3456666 89999999999975 4555   599999999999999999989999999


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcc-eEEEEECCCCCEEEEEe----CCCcEEEEEECCCCc
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT  292 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~-i~~v~~sp~g~~l~s~~----~dg~~i~iwd~~~~~  292 (368)
                      +++|++++..  +++ |+.|+.|++|+.. ++.+..+.+|.+. +..+.|.+++..|++++    .|+. |++||+++..
T Consensus       173 sla~spdG~l--Lat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~  248 (493)
T PTZ00421        173 SLEWNLDGSL--LCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMA  248 (493)
T ss_pred             EEEEECCCCE--EEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCC
Confidence            9999999974  443 7789999998865 4556677788764 45678999888777654    4788 9999998765


Q ss_pred             eeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCC
Q 017642          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~  339 (368)
                      .............+....|++++++|++++ .|+.|++||+.+++...
T Consensus       249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence            333322211334566778999999998887 59999999999876543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=6.7e-26  Score=186.04  Aligned_cols=243  Identities=14%  Similarity=0.243  Sum_probs=204.1

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ...+|-..|..+++|+-..||.+++ |+.|+.||++..+.+  +.+ ++|-..|.++...|....++++++|     ..+
T Consensus       188 tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI--R~Y-hGHlS~V~~L~lhPTldvl~t~grD-----st~  259 (460)
T KOG0285|consen  188 TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI--RHY-HGHLSGVYCLDLHPTLDVLVTGGRD-----STI  259 (460)
T ss_pred             eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH--HHh-ccccceeEEEeccccceeEEecCCc-----ceE
Confidence            4567999999999999999999999 777999999876665  556 4999999999999999999999998     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeC-ccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      +|||+++...+..+. |...|..+.+.|- ..++.  .|++|++||++.|+...++..|...+.+++.+|....  +| +
T Consensus       260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~--fA-S  336 (460)
T KOG0285|consen  260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL--FA-S  336 (460)
T ss_pred             EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh--hh-c
Confidence            999999999999999 9999999999984 44444  6999999999999999999999999999999998753  44 3


Q ss_pred             cCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec------cCcccEE
Q 017642          235 GLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------ADRAEIY  307 (368)
Q Consensus       235 g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~------~~~~~v~  307 (368)
                      ++.| .|+-|... +..+..+.+|...|++++...|| ++++|+++|. |.+||.++|...+.+...      .....|.
T Consensus       337 as~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~-~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~  413 (460)
T KOG0285|consen  337 ASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGS-IMFWDWKSGHNYQRGQTIVQPGSLESEAGIF  413 (460)
T ss_pred             cCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceE-EEEEecCcCcccccccccccCCcccccccee
Confidence            5544 46666554 45566688999999999998887 7889999999 999999998766554211      1245789


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +.+|...|..|++|..|.+|++|.-....
T Consensus       414 as~fDktg~rlit~eadKtIk~~keDe~a  442 (460)
T KOG0285|consen  414 ASCFDKTGSRLITGEADKTIKMYKEDEHA  442 (460)
T ss_pred             EEeecccCceEEeccCCcceEEEeccccc
Confidence            99999999999999999999999765443

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=4.2e-25  Score=201.27  Aligned_cols=228  Identities=14%  Similarity=0.162  Sum_probs=176.9

Q ss_pred             ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCc-----ceEEEcccCCceeEEEEEEeCCe-EEEEecCCC
Q 017642           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD  150 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d  150 (368)
                      ....+|.+.|++++|+| ++.+|++|+ |+.|+|||+.....     .....+. +|...|.++.|++.. ..+++++.|
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            34568999999999999 889999999 88899999975432     1223454 788889999999864 577787877


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe-eEEEEecC
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG  225 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~  225 (368)
                           +.|+|||+.+++.+..+. |...|.+++|++++.+++   .|+.|++||+++++.+..+..|.+.. ..+.|.++
T Consensus       148 -----gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        148 -----MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             -----CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence                 999999999999988888 899999999999999888   59999999999999988888887643 45778887


Q ss_pred             CCeEEEEe-ecCCCCeEEEEecCc--ceeeeeecc-CcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEec
Q 017642          226 VGSLVLVC-PGLQKGQVRVEHYAS--KRTKFIMAH-DSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       226 ~~~~~l~~-~g~~dg~i~i~~~~~--~~~~~~~~~-~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                      +..++.+. +++.|+.|++|+...  ..+.....+ ...+....|++++++|++++ .|+. |++||+.+++.+......
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~  301 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS  301 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc
Confidence            76533211 124689999999764  223333322 34566678999999998887 5999 999999999877665432


Q ss_pred             cCcccEEEEEEecC
Q 017642          301 ADRAEIYSLAFSSN  314 (368)
Q Consensus       301 ~~~~~v~~l~~sp~  314 (368)
                       +..++..++|.|.
T Consensus       302 -s~~~~~g~~~~pk  314 (493)
T PTZ00421        302 -SVEPHKGLCMMPK  314 (493)
T ss_pred             -CCCCCcceEeccc
Confidence             4456788888884

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.7e-26  Score=211.82  Aligned_cols=253  Identities=16%  Similarity=0.153  Sum_probs=202.3

Q ss_pred             CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC------C----Cc------ceEEEcccCCceeEEEEEE
Q 017642           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------F----RE------IFRRDFERGGGIGVVEMLF  137 (368)
Q Consensus        75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~~------~~~~~~~~~~~~~~~~~~~  137 (368)
                      ......-..|.+.|+|+.|++||++||+|+ |+-|.||....      .    ..      .....+. +|...|.++.|
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~W  137 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNW  137 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceecc
Confidence            344556678999999999999999999999 55599999873      0    00      1223444 89999999999


Q ss_pred             eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc
Q 017642          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI  213 (368)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~  213 (368)
                      +|+..++++++.|     ++|.+||..+.+.+..+. |.+.|..+.|.|-|++++   .|++|++|++.+....+.+..+
T Consensus       138 sp~~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p  212 (942)
T KOG0973|consen  138 SPDDSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP  212 (942)
T ss_pred             CCCccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence            9999999999998     999999999999999998 999999999999999999   6999999998887777777554


Q ss_pred             CC------CeeEEEEecCCCeEEEEeecCCC--CeEEEEec-CcceeeeeeccCcceEEEEECCC-------------CC
Q 017642          214 AN------PKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHY-ASKRTKFIMAHDSRIACFALTQD-------------GQ  271 (368)
Q Consensus       214 ~~------~v~~~~~~~~~~~~~l~~~g~~d--g~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~-------------g~  271 (368)
                      ..      ....+.|+|||+++...- +-+.  ..+.|..+ ..+.-..+-+|..++.++.|+|.             ..
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~n-A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~  291 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPN-AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN  291 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchh-hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence            33      356789999999744332 2222  24555333 33556678899999999999981             11


Q ss_pred             ----EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          272 ----LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       272 ----~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                          .+|+|+.|++ |-||.....+++.....- ....|.+++|+|||..|.++|.||+|.++.++..+
T Consensus       292 ~~y~i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  292 CYYCIAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             cceEEEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                6889999999 999998877776555432 34589999999999999999999999999998743

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=8.7e-26  Score=186.64  Aligned_cols=244  Identities=13%  Similarity=0.201  Sum_probs=197.3

Q ss_pred             CCcccccCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEecCCCcceE--EEcccCCceeEEEEEEeCCeEEEEecCC
Q 017642           76 PAESTSSSPPPTLLHISFNQD---HGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGP  149 (368)
Q Consensus        76 ~~~~~~~~h~~~v~~~~~s~~---g~~l~~~~-d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~  149 (368)
                      ....+..+|.++|.+++|--.   ...|++++ |..+++|.++.++....  ... .+|...|-++.-.+++..+++++.
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~  213 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC-RGHKRSVDSVSVDSSGTRFCSGSW  213 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh-cccccceeEEEecCCCCeEEeecc
Confidence            344567899999998888432   23577777 88999999987665432  122 388999999999999999999999


Q ss_pred             CCCCCCCcEEEEeCCC-------------------------CcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEc
Q 017642          150 DPQYPLNKVMIWDDHQ-------------------------SRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNF  201 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~-------------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~  201 (368)
                      |     ..|+||+..+                         +.++.++. |.+.|.++.|.+.+..+.  .|.+|+.||+
T Consensus       214 D-----~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDl  288 (423)
T KOG0313|consen  214 D-----TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDL  288 (423)
T ss_pred             c-----ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEe
Confidence            8     9999999321                         12445556 999999999999655444  6999999999


Q ss_pred             CCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc----eeeeeeccCcceEEEEECCCCC-EEEEE
Q 017642          202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDGQ-LLATS  276 (368)
Q Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~i~~v~~sp~g~-~l~s~  276 (368)
                      ++++.+.++.+ .....++.+++..+  +|++ |+.|..+++|+...+    ....+.+|.+.|.++.|+|... +|++|
T Consensus       289 etg~~~~~~~~-~ksl~~i~~~~~~~--Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~  364 (423)
T KOG0313|consen  289 ETGGLKSTLTT-NKSLNCISYSPLSK--LLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG  364 (423)
T ss_pred             ecccceeeeec-CcceeEeecccccc--eeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence            99999888764 55788899999765  4555 889999999886652    3456889999999999999765 78899


Q ss_pred             eCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          277 STKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       277 ~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +.|++ +++||+++.+ +++.+.+  |...|.++.|. ++..+++|+.|.+|+|+.-.
T Consensus       365 S~D~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  365 SYDNT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ecCCe-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99999 9999999887 8999988  78899999997 57789999999999998653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=204.40  Aligned_cols=240  Identities=20%  Similarity=0.317  Sum_probs=203.3

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..+|.+.|.+++|..-+.+|++|+ |.+++|||+.++++.  ..+. +|...+.++...+  ..+++|+.|     .+|+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~~--~~~~sgs~D-----~tVk  314 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTIDP--FLLVSGSRD-----NTVK  314 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEccC--ceEeeccCC-----ceEE
Confidence            679999999999988788999999 999999998887776  5564 7888887776654  445667777     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +|++.++.++..+. |.+.|+++..+ ...++.  .|+.|++||+.++++++.+.+|...|.++.+... +  .+. +|+
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~-Sgs  389 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N--RLL-SGS  389 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c--eEE-eee
Confidence            99999999999999 99999999998 333333  6999999999999999999999999999977664 3  233 588


Q ss_pred             CCCeEEEEecCcc--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          237 QKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       237 ~dg~i~i~~~~~~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      .|+.|++|+....  ++..+.+|..-+..+.+  .+++|++++.|+. |++||..++++++.+... |.+.|..+++.  
T Consensus       390 ~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--  463 (537)
T KOG0274|consen  390 LDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--  463 (537)
T ss_pred             eccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--
Confidence            9999999988876  78889999998877765  6789999999999 999999999999999874 45778888876  


Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642          315 AQWLAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                      ...+++++.||++++||+++++.....
T Consensus       464 ~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cceEEEEecCCeeEEEecccCchhhhh
Confidence            457888899999999999999877644

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.3e-25  Score=188.84  Aligned_cols=240  Identities=19%  Similarity=0.276  Sum_probs=194.6

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i  158 (368)
                      .......|+++.|-.||++||+|+ .+.|+|||+.+  ....+.+. .|...+....|++ ++..++++++|     +.+
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd-----~v~  135 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDD-----KVV  135 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHh-hccCceeEEEecccCCeEEEecCCC-----ceE
Confidence            445678899999999999999999 55599999554  22224554 7888888888887 45667777777     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      ++||+.+.....++. |++.|++.+|+|... +++   .||.|++||++.. ..+.++ .|..+|..+.+-|.|..  ++
T Consensus       136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~--ia  212 (487)
T KOG0310|consen  136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL--IA  212 (487)
T ss_pred             EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE--EE
Confidence            999999988765676 999999999999755 444   6999999999876 566666 48889999999999875  44


Q ss_pred             eecCCCCeEEEEecC-cce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          233 CPGLQKGQVRVEHYA-SKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~-~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      ++|  ...+++|+.. +.. +..+..|...|+|+.+..++..|++|+-|+. |++||+.+.+.++.+.   ..++|.+++
T Consensus       213 sAg--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsia  286 (487)
T KOG0310|consen  213 SAG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIA  286 (487)
T ss_pred             EcC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEE
Confidence            333  4789999987 433 3345559999999999999999999999999 9999999999998888   578999999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+|+++.++.|..||.+.+=+....++
T Consensus       287 vs~dd~t~viGmsnGlv~~rr~~~k~k  313 (487)
T KOG0310|consen  287 VSPDDQTVVIGMSNGLVSIRRREVKKK  313 (487)
T ss_pred             ecCCCceEEEecccceeeeehhhcccC
Confidence            999999999999999877765544433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=191.60  Aligned_cols=239  Identities=18%  Similarity=0.274  Sum_probs=196.8

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .+...+..+.|+++.|.++++++++++ |+.+++|+++..+..  .++. +|...+.++.|.-....+++++.|     .
T Consensus       212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~vVsgs~D-----R  283 (459)
T KOG0288|consen  212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRVVSGSAD-----R  283 (459)
T ss_pred             hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccceeecccc-----c
Confidence            345566777899999999999887777 888999999876655  5565 899999999998777778999988     9


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +|++||+....|.+++-....+.+|..+  ...++   .|++|++||+++..+...+..+. .|+++.++.++..++ . 
T Consensus       284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-s-  358 (459)
T KOG0288|consen  284 TIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-S-  358 (459)
T ss_pred             hhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-e-
Confidence            9999999999999998888888888877  23333   68999999999999999887654 899999999998733 3 


Q ss_pred             ecCCCCeEEEEecCcce-eeeeec----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          234 PGLQKGQVRVEHYASKR-TKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~-~~~~~~----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                       .+.|.++.+.+..+.. ...+.+    .....+.+.|||++.|+++|+.||. |+||++.++++...+........|++
T Consensus       359 -ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s  436 (459)
T KOG0288|consen  359 -SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITS  436 (459)
T ss_pred             -ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEE
Confidence             3689999995555543 333432    1234789999999999999999999 99999999999988887533337999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEE
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ++|+|.|..|++++.++.+.+|.
T Consensus       437 ~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  437 LSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999993

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.5e-25  Score=190.89  Aligned_cols=239  Identities=15%  Similarity=0.204  Sum_probs=194.6

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           84 PPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        84 h~~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ..+.|.+++|+|... -+|+.+.-.+.||+..+....  +.+. .-...+.+..|..++..++.|+..     |.|+|||
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~s-rFk~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD   96 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFS-RFKDVVYSVDFRSDGRLLAAGDES-----GHVKVFD   96 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhh--hhHH-hhccceeEEEeecCCeEEEccCCc-----CcEEEec
Confidence            346899999999655 467777778999997654443  3333 445678899999999999999987     9999999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      .++...++.+. |..+|..+.|+|++..++    .|+.+++||+.+......+.+|.+-|.+.+|+|..++++  .+|+.
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv--vtGsY  174 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV--VTGSY  174 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE--EecCC
Confidence            77766777777 999999999999766555    477999999998887668899999999999999988743  36999


Q ss_pred             CCeEEEEecCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEeeEeccCcccEEEEEEecCC
Q 017642          238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       238 dg~i~i~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      ||.|++|+..... ...--.|..+|..+.+-|.|..+++++.+.  |+|||+.+|.. +..+..  |...|+|+++..++
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMFN--HNKTVTCLRLASDS  250 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhhc--ccceEEEEEeecCC
Confidence            9999999987753 223346899999999999999999998764  99999996554 444443  77899999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCC
Q 017642          316 QWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..|++++-|+.+++||+.+-+
T Consensus       251 ~rLlS~sLD~~VKVfd~t~~K  271 (487)
T KOG0310|consen  251 TRLLSGSLDRHVKVFDTTNYK  271 (487)
T ss_pred             ceEeecccccceEEEEccceE
Confidence            999999999999999976543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=6.2e-27  Score=195.33  Aligned_cols=254  Identities=15%  Similarity=0.209  Sum_probs=209.9

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      .......|.+.+..+.|-++...|++|+ |..|++|++...+......+. +....+.++.|+.++..+++.+.|     
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d-----  240 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASND-----  240 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCC-----
Confidence            3456678999999999999988899988 989999999877766666775 777889999999999888888887     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +.+++|++...+...++. |.+.|+++.|......++   .|.+|++||+....|.+++.. ...+..++.+  +   ..
T Consensus       241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~---~~  314 (459)
T KOG0288|consen  241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--I---SD  314 (459)
T ss_pred             Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--c---ee
Confidence            999999999999999998 999999999988776555   689999999999888877643 3344445554  1   23


Q ss_pred             EeecCCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--CcccEEE
Q 017642          232 VCPGLQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYS  308 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~  308 (368)
                      +.+|..|++|++|+. .......+..+. .|+++..+.+|..|.+++.|.. +.+.|+++.+....+....  .....+.
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtr  392 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTR  392 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccce
Confidence            346899999999994 456666666655 8999999999999999999999 9999999998887776421  2235889


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      +.|||++.|+++|+.||.|+||++.+++-+......
T Consensus       393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             eEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence            999999999999999999999999999877665544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=1.9e-25  Score=203.88  Aligned_cols=242  Identities=19%  Similarity=0.302  Sum_probs=202.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+...+.+..|.  ..++.++. +..|++|+..+..... ..+. +|...+.++.+......+++|+.|     .++++|
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvW  276 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGSTD-----KTERVW  276 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEecC-----CcEEeE
Confidence            467788899988  44666666 8889999987655542 2254 899999999998777778888887     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg  239 (368)
                      |..+|++...+. |.+.|.++...+....-. .|.+|++|++++++++..+.+|.++|.++.+.  +.  +++ +|+.|+
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lv-sgs~d~  351 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLV-SGSYDG  351 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEE-EEecCc
Confidence            999999999999 999999988766543333 79999999999999999999999999999887  33  244 488999


Q ss_pred             eEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCCCE
Q 017642          240 QVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQW  317 (368)
Q Consensus       240 ~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~  317 (368)
                      .|++|+.. .+.++.+.+|...|+++.+... .++++|+.|+. |++||+++. +++..+..  |..-+..+.+  .+++
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~  425 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNF  425 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccce
Confidence            99998765 4778889999999999988654 89999999999 999999999 99999998  7777766654  5789


Q ss_pred             EEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          318 LAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      |++++.|++|++||.++++.....+..
T Consensus       426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  426 LVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             eEeccccccEEEeecccCceeeeeccC
Confidence            999999999999999999888766653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.5e-25  Score=172.91  Aligned_cols=203  Identities=16%  Similarity=0.184  Sum_probs=180.5

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~  202 (368)
                      .+...+..+.|+.++.+.++++.|     .+|++|+...+.+++++. |...|..++.+.|+..++   .|..|.+||++
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            677889999999999999999988     999999999999999999 999999999999988887   58899999999


Q ss_pred             CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc---ceeeeeeccCcceEEEEECCCCCEEEEEeCC
Q 017642          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      +|+.++.+.+|...|+.+.|+.+..  +++ +|+.|..+++|+...   ++++.+......|.+|..  .+..|++|+.|
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~D  164 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESS--VVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVD  164 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcce--EEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccC
Confidence            9999999999999999999988775  344 699999999999776   566667777888999988  45689999999


Q ss_pred             CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      |+ ++.||++.|+....+.+    .+|+++.|++|++.++.++.|++|++.|-++++-....-++
T Consensus       165 Gt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  165 GT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             Cc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence            99 99999999998776665    38999999999999999999999999999999876655544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.3e-24  Score=171.41  Aligned_cols=239  Identities=15%  Similarity=0.218  Sum_probs=202.2

Q ss_pred             ccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      -...+|.+.|-.++|+|. ..+|++++ |+.|++||....++.....    ....-+-+.|+|++..++.++.|     .
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~----~~~eni~i~wsp~g~~~~~~~kd-----D  128 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE----TKGENINITWSPDGEYIAVGNKD-----D  128 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee----ccCcceEEEEcCCCCEEEEecCc-----c
Confidence            345689999999999875 45777777 8899999998877764433    33444567788999998888887     8


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      .|.+.|.++.+.+.+.+....+..+.|+-++.+++   ..|+|.|......+.++.++.|.....|+.|+|+|++  +|+
T Consensus       129 ~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry--fA~  206 (313)
T KOG1407|consen  129 RITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY--FAT  206 (313)
T ss_pred             cEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce--Eee
Confidence            99999999999999888888899999997776666   3589999999999999999999998999999999995  554


Q ss_pred             ecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                       |+.|..+.+|+.+. -+++.+..+..+|+.+.|+-||++||+|++|.. |-|=++++|..+.+++   +.++...++|+
T Consensus       207 -GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWH  281 (313)
T KOG1407|consen  207 -GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWH  281 (313)
T ss_pred             -ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEec
Confidence             88999999988765 566778889999999999999999999999999 9999999999999998   57899999999


Q ss_pred             cCCCEEEEEeCC---------CeEEEEEcc
Q 017642          313 SNAQWLAVSSDK---------GTVHVFNLK  333 (368)
Q Consensus       313 p~~~~l~s~s~d---------g~i~iwd~~  333 (368)
                      |...+||-+++|         |.+++|-+.
T Consensus       282 Pk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  282 PKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CCCceeeEEecCCCCccccccceeEEecCC
Confidence            999999877654         456666543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.3e-25  Score=188.26  Aligned_cols=247  Identities=13%  Similarity=0.173  Sum_probs=188.9

Q ss_pred             ccccCCCCCEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceE--------EEcccCCceeEEEEEEeCCe-EEEEec
Q 017642           79 STSSSPPPTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFR--------RDFERGGGIGVVEMLFRCNI-LALVGG  147 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~s~  147 (368)
                      ...-.|.+.|+.+.+.|....+ |+++ .+.|.|||..+......        ..+. +|......++|+... ..++++
T Consensus       118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeec
Confidence            3456899999999999987655 5555 44499999865433221        1333 555556777887643 456677


Q ss_pred             CCCCCCCCCcEEEEeCCCCc-------EEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcC--CCeEEEEEecc
Q 017642          148 GPDPQYPLNKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA--DLKLLHQIETI  213 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~--~~~~~~~~~~~  213 (368)
                      +.|     +.|++||+....       ....+. |...|..++|++-...++    .|+.+.|||+|  +.++.+...+|
T Consensus       197 ~~d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah  271 (422)
T KOG0264|consen  197 SDD-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH  271 (422)
T ss_pred             cCC-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence            776     999999987542       233445 999999999999654444    68999999999  55667778899


Q ss_pred             CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC
Q 017642          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~  290 (368)
                      ..++.+++|+|.+.. +|| +|+.|++|++|+.+.  .++..+.+|...|.+|.|+|+.. +||+++.|+. +.|||+..
T Consensus       272 ~~~vn~~~fnp~~~~-ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~  348 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEF-ILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSR  348 (422)
T ss_pred             CCceeEEEeCCCCCc-eEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccc
Confidence            999999999999975 445 488999999988775  56778999999999999999765 8999999999 99999964


Q ss_pred             CceeE------------eeEeccCcccEEEEEEecCCCE-EEEEeCCCeEEEEEccC
Q 017642          291 GTLLQ------------EVRRGADRAEIYSLAFSSNAQW-LAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       291 ~~~~~------------~~~~~~~~~~v~~l~~sp~~~~-l~s~s~dg~i~iwd~~~  334 (368)
                      -...+            .|.-+.|...|..+.|+|+..+ |++.++|+.+.||+...
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            22111            1332338889999999998875 56778999999999874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.5e-25  Score=176.83  Aligned_cols=243  Identities=18%  Similarity=0.242  Sum_probs=186.2

Q ss_pred             CCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE----EEcc-------------------------
Q 017642           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR----RDFE-------------------------  125 (368)
Q Consensus        76 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~----~~~~-------------------------  125 (368)
                      ...+...+|.+.|++++|+.||++|++++ |+.|+||+++.......    ..++                         
T Consensus        77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            34567789999999999999999999999 88899999865432110    0000                         


Q ss_pred             ---------------------------cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCc
Q 017642          126 ---------------------------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE  177 (368)
Q Consensus       126 ---------------------------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~  177 (368)
                                                 ..|...++.+-...+..++++++.|     ..|.+|+++ |+.+..+. ....
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d-----t~i~lw~lk-Gq~L~~idtnq~~  230 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD-----TKICLWDLK-GQLLQSIDTNQSS  230 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC-----CcEEEEecC-Cceeeeecccccc
Confidence                                       1234445555556677888888887     999999988 88888887 6667


Q ss_pred             eeEEEEeeCccEEEe---CCcEEEEEc---CCC-----eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec
Q 017642          178 VRSVKLRRDRIIVVL---EQKIFVYNF---ADL-----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY  246 (368)
Q Consensus       178 v~~~~~~~~~~~l~~---d~~i~vwd~---~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~  246 (368)
                      -+..+.+|+|++++.   --.|++|.+   ++|     ..+..+++|...|...+|+++....+.   .+.||.++||+.
T Consensus       231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vt---vSkDG~wriwdt  307 (420)
T KOG2096|consen  231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVT---VSKDGKWRIWDT  307 (420)
T ss_pred             ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEE---EecCCcEEEeec
Confidence            788899999999994   457999987   333     235567899999999999999987443   568999999987


Q ss_pred             Ccce--------eee----eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          247 ASKR--------TKF----IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       247 ~~~~--------~~~----~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      +.+.        ++.    +..-.+....++++|.|+.||.+... . |+++..++|+...++... |...|.+++|+++
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~-l~~~~se~g~~~~~~e~~-h~~~Is~is~~~~  384 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-D-LKVFASEDGKDYPELEDI-HSTTISSISYSSD  384 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-c-eEEEEcccCccchhHHHh-hcCceeeEEecCC
Confidence            6422        111    11223334589999999988876644 4 999999999888777754 7899999999999


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 017642          315 AQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd  331 (368)
                      |+++++++ |+.++++.
T Consensus       385 g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  385 GKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CcEEeeec-ceeeeeec
Confidence            99999986 67788876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=5.5e-25  Score=181.94  Aligned_cols=244  Identities=14%  Similarity=0.198  Sum_probs=191.4

Q ss_pred             CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC---CeEEEEecCCC
Q 017642           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPD  150 (368)
Q Consensus        75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d  150 (368)
                      ++.+.....|++.|.++...  ++++++|+ |+.+++|+... +..  ..+. +|...+.++.+.-   ....+++++.|
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~--~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~D  168 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI--KTIV-GHTGPIKSVAWVIKNSSSCLFVSASMD  168 (423)
T ss_pred             CCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE--EEEe-cCCcceeeeEEEecCCccceEEEecCC
Confidence            34455566899999999887  77999999 88899999753 333  3333 7777777666643   33358888888


Q ss_pred             CCCCCCcEEEEeCCCCcEEEE----E-ecCCceeEEEEeeCccEEE---eCCcEEEEEcCC-------------------
Q 017642          151 PQYPLNKVMIWDDHQSRCIGE----L-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-------------------  203 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~----~-~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~-------------------  203 (368)
                           .++++|-++.++....    - .|...|.++...+++..++   .|..|++|+.++                   
T Consensus       169 -----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~  243 (423)
T KOG0313|consen  169 -----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR  243 (423)
T ss_pred             -----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence                 9999999887754322    2 3899999999999999888   699999999321                   


Q ss_pred             ------CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642          204 ------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       204 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~  277 (368)
                            +.++.++.+|..+|..+.|++.+    ++++++.|.+|+.|+........-......+.++..+|..++|++|+
T Consensus       244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~----v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs  319 (423)
T KOG0313|consen  244 EKEGGTRTPLVTLEGHTEPVSSVVWSDAT----VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS  319 (423)
T ss_pred             hhcccccCceEEecccccceeeEEEcCCC----ceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence                  12456778999999999999844    45568899999999887655444334456799999999999999999


Q ss_pred             CCCcEEEEEECCCCc---eeEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCC
Q 017642          278 TKGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       278 ~dg~~i~iwd~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .|.. |++||.+++.   ..+.|.+  |.+.|.++.|+|... .|++++.|+++++||+++.+
T Consensus       320 sdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  320 SDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             CCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            9999 9999998753   3456666  888999999999654 68899999999999999877

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=9.7e-24  Score=193.36  Aligned_cols=219  Identities=10%  Similarity=0.101  Sum_probs=165.8

Q ss_pred             CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCc--------EEEEEe-c
Q 017642          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-F  174 (368)
Q Consensus       105 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~--------~~~~~~-~  174 (368)
                      ++.+++|+.....  ....+. +|...|.++.|++. ...+++++.|     +.|++||+.++.        ++..+. |
T Consensus        53 ~gvI~L~~~~r~~--~v~~L~-gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         53 IGAIRLENQMRKP--PVIKLK-GHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             eeEEEeeecCCCc--eEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecC
Confidence            5568999876543  334554 88899999999986 6788888888     999999997642        234555 8


Q ss_pred             CCceeEEEEeeCccEE-E---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-c
Q 017642          175 RSEVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K  249 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l-~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~  249 (368)
                      ...|.+++|+|++..+ +   .|+.|++||+++++.+..+. +...+.+++|+++|..  +++ ++.|+.|+||+... .
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l--Lat-~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL--LSG-TCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE--EEE-EecCCEEEEEECCCCc
Confidence            8999999999988654 3   59999999999998777775 5678999999999984  443 56799999988665 5


Q ss_pred             eeeeeeccCcceEE-----EEECCCCCEEEEEeCCC----cEEEEEECCC-CceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642          250 RTKFIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (368)
Q Consensus       250 ~~~~~~~~~~~i~~-----v~~sp~g~~l~s~~~dg----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  319 (368)
                      .+..+.+|.+.+.+     ..|++++.+|++++.|+    . |+|||+++ ++++..+....+.+.+......++|.+++
T Consensus       201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l  279 (568)
T PTZ00420        201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL  279 (568)
T ss_pred             EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence            56678889876543     33568888999888764    6 99999995 56666555432333344444455688999


Q ss_pred             EEeCCCeEEEEEccCCC
Q 017642          320 VSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       320 s~s~dg~i~iwd~~~~~  336 (368)
                      +|+.|+.|++|++..+.
T Consensus       280 sGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        280 IGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EEECCCeEEEEEccCCc
Confidence            99999999999997653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.2e-25  Score=191.08  Aligned_cols=249  Identities=14%  Similarity=0.200  Sum_probs=180.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE--EEccc--CCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFER--GGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      ....|+..|.++++.|.|..|++|+ |..|++||+........  +.+..  .|.+....+....+.++++++.      
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------  235 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------  235 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------
Confidence            4567788999999999999999999 99999999976543221  22222  3444444444445556666665      


Q ss_pred             CCcEEEEeCCCCcEEEEE-------------e-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-EEEEEe----
Q 017642          155 LNKVMIWDDHQSRCIGEL-------------S-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-LLHQIE----  211 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~-------------~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-~~~~~~----  211 (368)
                       ...+|+| +.|..+.++             + |...+++.+|+|+.+-.+    .||++++||+.+.+ .++.++    
T Consensus       236 -aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  236 -AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             -cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence             6799999 555444332             2 677899999999765433    69999999997643 333443    


Q ss_pred             -ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee----eeeeccCc--ceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          212 -TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDS--RIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       212 -~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~----~~~~~~~~--~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                       +..-+++.|+|++|++.  +|+ |..||.|.+|+.....+    ..-.+|..  .|+||.||+||++|++-+.|++ ++
T Consensus       314 ~g~Rv~~tsC~~nrdg~~--iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LK  389 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKL--IAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LK  389 (641)
T ss_pred             CCcccCceeeecCCCcch--hhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-ee
Confidence             23346788999999985  454 78999999999755332    23356776  8999999999999999999999 99


Q ss_pred             EEECCCC-ceeEeeEeccCcccEEEEEEecCCCEEEEEeC------CCeEEEEEccCCCCCCC
Q 017642          285 IFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       285 iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~  340 (368)
                      +||++.. +++....+-....+-+.++|||+.++|++|+.      .|++.+||..+-.....
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k  452 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK  452 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence            9999975 45555444334456788999999999999853      46899999877665433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=180.58  Aligned_cols=240  Identities=13%  Similarity=0.207  Sum_probs=201.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .....|.++...+....+++|+ |..+.++|....+..  ..+. +|...+..+.++++...+.+++.|     ..|+||
T Consensus       217 t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vw  288 (506)
T KOG0289|consen  217 TSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITASAD-----EIIRVW  288 (506)
T ss_pred             cCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecCCc-----ceEEee
Confidence            3456889999988877888888 778999998766655  5565 999999999999999999999987     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeec
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ......+..... |.++|+.+..+|.|.|++   .|++.-+.|++++.++.....  ..-.+++.+|+|||-   +..+|
T Consensus       289 s~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL---ifgtg  365 (506)
T KOG0289|consen  289 SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL---IFGTG  365 (506)
T ss_pred             ccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce---EEecc
Confidence            988776666666 999999999999999998   589999999999988777654  234578899999994   44459


Q ss_pred             CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      ..||.++||+... ..+..|.+|.++|..|+|+.+|-+|+++++|+. |++||++..+...++... ....+.++.|.+.
T Consensus       366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQS  443 (506)
T ss_pred             CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCC
Confidence            9999999988766 456678999999999999999999999999999 999999999888888764 3347999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCC
Q 017642          315 AQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |.+|+.++.|=.|++++-.+.
T Consensus       444 Gt~L~~~g~~l~Vy~~~k~~k  464 (506)
T KOG0289|consen  444 GTYLGIAGSDLQVYICKKKTK  464 (506)
T ss_pred             CCeEEeecceeEEEEEecccc
Confidence            999999987766666664443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7e-26  Score=186.19  Aligned_cols=248  Identities=15%  Similarity=0.226  Sum_probs=187.1

Q ss_pred             cccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC------
Q 017642           80 TSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------  151 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~------  151 (368)
                      ...+|.+.|.|++=+|.. ..+++|+ ||.|+|||+....+.  ..+. .|...|..++++.+  .++++++|.      
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~~--~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQT--SFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEeccc--ceEEecCCcceeeee
Confidence            347999999999999987 6788998 999999999866555  4554 77777777777663  333333330      


Q ss_pred             -------------------------CC--CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEE
Q 017642          152 -------------------------QY--PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVY  199 (368)
Q Consensus       152 -------------------------~~--~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vw  199 (368)
                                               .|  ....|.|||.....++..+. ....|.++.|+|-...++    +|+.|.||
T Consensus       136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence                                     00  01236666666666777777 667789999999765544    69999999


Q ss_pred             EcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       200 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~  277 (368)
                      |++++.+++.+.. ...-+.++|+|.+-  .++ +|++|..++.++...  ..+....+|...|..+.|+|.|+-+++|+
T Consensus       216 D~R~~~Pl~KVi~-~mRTN~IswnPeaf--nF~-~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  216 DLRQASPLKKVIL-TMRTNTICWNPEAF--NFV-AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             ecccCCccceeee-eccccceecCcccc--cee-eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence            9999988876642 33446799999443  233 478999999855443  56677889999999999999999999999


Q ss_pred             CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .|.+ |+||..+.+...-.+... .-..|.++.||.|.+++++||+|+.|++|...-.++.
T Consensus       292 yDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  292 YDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ccce-EEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            9999 999999887665444322 2357999999999999999999999999987655443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.1e-24  Score=184.38  Aligned_cols=250  Identities=16%  Similarity=0.196  Sum_probs=210.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc---eEE------E-----cc-cCCceeEEEEEEeCCe
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI---FRR------D-----FE-RGGGIGVVEMLFRCNI  141 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~---~~~------~-----~~-~~~~~~~~~~~~~~~~  141 (368)
                      ......|.-.|.+|+++|++++..+++ ++.|.-|++.++...   ...      .     .. ..|...+++++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            567788999999999999999999999 888999998765532   111      0     00 1677889999999999


Q ss_pred             EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK  217 (368)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v  217 (368)
                      .++++++.|     ..|.||+..+.+.++.+. |.+.|.+++|-.....+.   .|..|++|++.....+.++.+|.+.|
T Consensus       215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            999999998     999999999999999988 999999999987544333   79999999999988888999999999


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ..+....-++   +++.|..|+++++|.........+.+|.+.+.|++|-.+ .++++|+.+|. |.+|++.+.+++...
T Consensus       290 ~~IdaL~reR---~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  290 LGIDALSRER---CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTS  364 (479)
T ss_pred             eeechhcccc---eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEe
Confidence            8887766665   444588999999999988777888999999999999854 57999999999 999999999888776


Q ss_pred             Eecc----------CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          298 RRGA----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       298 ~~~~----------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +..+          +...|++++..|...++++|+.+|.|++|.+.++-+
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            5421          112789999999999999999999999999998844

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.5e-25  Score=171.79  Aligned_cols=236  Identities=18%  Similarity=0.199  Sum_probs=180.4

Q ss_pred             EEEEEcC--CCCEE-EEE------eCCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCCC
Q 017642           89 LHISFNQ--DHGCF-AAG------TDHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN  156 (368)
Q Consensus        89 ~~~~~s~--~g~~l-~~~------~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~~  156 (368)
                      +++.|||  ++++. |++      +.+.+.|.++...+. .....+  .-.....+++|+++  ..+++.. .|     |
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~--d~~D~LfdV~Wse~~e~~~~~a~-GD-----G   83 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY--DTEDGLFDVAWSENHENQVIAAS-GD-----G   83 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee--ecccceeEeeecCCCcceEEEEe-cC-----c
Confidence            5678888  33332 222      234488888863333 333444  45566778888764  3344443 33     9


Q ss_pred             cEEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          157 KVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       157 ~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      .+++||+.. ..++..++ |...|.++.|++-.+..+    .|++|++|+...++.++++.+|...|....|+|....++
T Consensus        84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence            999999643 36778888 999999999999544433    599999999999999999999999999999999988754


Q ss_pred             EEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEE
Q 017642          231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIY  307 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~  307 (368)
                      ..  .+.|+.+++|+.+. .....+..|...|.|+.|+. +.++|+||+.|+. |++||+++. .++.++.+  |.-.|.
T Consensus       164 as--~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVR  238 (311)
T KOG0277|consen  164 AS--ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVR  238 (311)
T ss_pred             EE--ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEE
Confidence            43  56799999988654 33344889999999999997 4568999999999 999999975 46777766  788999


Q ss_pred             EEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642          308 SLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       308 ~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+.|||.. .+|++++.|-++||||...+..
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             EEecCcchhhHhhhccccceEEecccccchh
Confidence            99999965 5789999999999999976544

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.5e-23  Score=192.05  Aligned_cols=228  Identities=12%  Similarity=0.163  Sum_probs=171.3

Q ss_pred             ccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcc------eEEEcccCCceeEEEEEEeCCeE-EEEecCC
Q 017642           79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREI------FRRDFERGGGIGVVEMLFRCNIL-ALVGGGP  149 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~  149 (368)
                      ....+|.+.|.+++|+|+ +.+|++|+ |+.|+||++......      ....+. +|...+.++.|+|++. ++++++.
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeC
Confidence            345689999999999997 78999999 888999999754321      112343 7788899999999765 4567777


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEE-----
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA-----  221 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~-----  221 (368)
                      |     +.|++||+.+++.+..+.+...|.+++|+++|.+++   .|+.|+|||+++++.+..+.+|.+.+....     
T Consensus       147 D-----gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        147 D-----SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             C-----CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence            7     999999999999888888888999999999999988   489999999999999999988887654433     


Q ss_pred             EecCCCeEEEEeecCCC---CeEEEEecCc--ceeeeee--ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642          222 VSQGVGSLVLVCPGLQK---GQVRVEHYAS--KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~d---g~i~i~~~~~--~~~~~~~--~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                      |+++++.  ++++|..+   +.|+||+...  ..+..+.  .+.+.+......++|.++++|+.|+. |++|++..+. +
T Consensus       222 fs~d~~~--IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~  297 (568)
T PTZ00420        222 LGGDDNY--ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-I  297 (568)
T ss_pred             EcCCCCE--EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-E
Confidence            3466664  44434333   4799999773  3343332  23334444444556889999999999 9999998764 3


Q ss_pred             EeeEeccCcccEEEEEEecCCC
Q 017642          295 QEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       295 ~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      ..+....+..++.+++|.|+..
T Consensus       298 ~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        298 RKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EeecccccCCCccceEEccccc
Confidence            4454444567889999999653

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.4e-23  Score=168.83  Aligned_cols=257  Identities=16%  Similarity=0.176  Sum_probs=191.3

Q ss_pred             cccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      +.+....++.|.+|+|||. ..+|++|+ |+.||+|+++......-+.. ..+...+++++|+.++..+++++.|     
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-~~~~~PvL~v~WsddgskVf~g~~D-----   93 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-QSHDGPVLDVCWSDDGSKVFSGGCD-----   93 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-hccCCCeEEEEEccCCceEEeeccC-----
Confidence            4445566789999999995 44555777 99999999987433222223 3788999999999999988888887     


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc--EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      +.+++||+.+++....-.|.++|..+.|-+...  .|+   .|++|+.||++...++.++... ..+.++..  -..  +
T Consensus        94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~p--m  168 (347)
T KOG0647|consen   94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYP--M  168 (347)
T ss_pred             CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCc--e
Confidence            999999999997766666999999999988765  555   6999999999998888887643 34443332  222  2


Q ss_pred             EEeecCCCCeEEEEecCccee--eeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeEeeEeccC---
Q 017642          231 LVCPGLQKGQVRVEHYASKRT--KFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGAD---  302 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~~~~--~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~---  302 (368)
                      ++. +..+..|.++.......  +.++ .-...++||+..+|....+.|+-+|. +-|..+..+  +.-..|+.|..   
T Consensus       169 ~vV-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~  246 (347)
T KOG0647|consen  169 AVV-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNS  246 (347)
T ss_pred             eEE-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCC
Confidence            222 34578888877654321  1121 23445889999998888899999999 999988876  44445555321   


Q ss_pred             ----cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCCC
Q 017642          303 ----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS  347 (368)
Q Consensus       303 ----~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  347 (368)
                          -..|++|+|+|.-..|++++.||++.+||-+...+....+.....
T Consensus       247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qp  295 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQP  295 (347)
T ss_pred             CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCc
Confidence                125788999999999999999999999999888887776665443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-25  Score=194.57  Aligned_cols=229  Identities=17%  Similarity=0.289  Sum_probs=191.6

Q ss_pred             CCCCEEEEEe-CCeEEEEEecCCCcc----eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC--c
Q 017642           95 QDHGCFAAGT-DHGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--R  167 (368)
Q Consensus        95 ~~g~~l~~~~-d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~--~  167 (368)
                      |.+++|.+|+ |+.|++|++......    +...++ .|...+.++....++..+++++.|     -+|++|+...+  -
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsD-----tTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSD-----TTVKVWNAHKDNTF  108 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCC-----ceEEEeecccCcch
Confidence            5677899998 888999998654432    334554 788888888888888888888887     99999998877  5


Q ss_pred             EEEEEe-cCCceeEEEE-eeCccEEE---eCCcEEEEEcCCCe--EEEE--------Ee-ccCCCeeEEEEecCCCeEEE
Q 017642          168 CIGELS-FRSEVRSVKL-RRDRIIVV---LEQKIFVYNFADLK--LLHQ--------IE-TIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       168 ~~~~~~-~~~~v~~~~~-~~~~~~l~---~d~~i~vwd~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +..++. |.+.|.|+++ .++..+++   .|+.|++||++++.  .+..        +. ++...+.+++.++.|.  ++
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~i  186 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--II  186 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EE
Confidence            677777 9999999999 66777777   59999999999772  2222        22 5667888899988883  34


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      + +|+..+.+++|+... +.+..+.+|...|..+..+.||+.+++++.||+ |++||+...+++.++..  |...|+++.
T Consensus       187 v-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e~VWaL~  262 (735)
T KOG0308|consen  187 V-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKEGVWALQ  262 (735)
T ss_pred             E-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccCceEEEe
Confidence            4 588899999988665 667778999999999999999999999999999 99999999999999988  777899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      .+|+=..+++|+.||.|..=|+.+.
T Consensus       263 ~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  263 SSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eCCCcceEEecCCCCcEEecccCCc
Confidence            9999999999999999999999885

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=5.6e-25  Score=172.45  Aligned_cols=201  Identities=19%  Similarity=0.326  Sum_probs=169.0

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      +-.|..-|.+++|+.|.++|++|+ ++-+||||++..+... ..+. +|...|..+.|......+++..+|     ++||
T Consensus        96 sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~-ghtg~Ir~v~wc~eD~~iLSSadd-----~tVR  168 (334)
T KOG0278|consen   96 SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEIS-GHTGGIRTVLWCHEDKCILSSADD-----KTVR  168 (334)
T ss_pred             hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhc-CCCCcceeEEEeccCceEEeeccC-----CceE
Confidence            457888999999999999999999 7779999998655432 3444 888899999988777777776776     9999


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       160 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      +||.++++.++++..+..|+++.++++|+++.  ..+.|..||..+...++.++. ...|.+..++|+..  ++++ |++
T Consensus       169 LWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~--~fVa-Gge  244 (334)
T KOG0278|consen  169 LWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE--FFVA-GGE  244 (334)
T ss_pred             EEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCc--eEEe-cCc
Confidence            99999999999999999999999999999988  567999999999998888764 45678889999885  3444 789


Q ss_pred             CCeEEEEecCc-ceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642          238 KGQVRVEHYAS-KRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       238 dg~i~i~~~~~-~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                      |..++.+++.. ..+..+ ++|.++|.|+.|+|+|...++|++||+ |+||.+..++.
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~  301 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKT  301 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCc
Confidence            99999866554 444443 899999999999999999999999999 99999866553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.93  E-value=1.6e-25  Score=190.40  Aligned_cols=210  Identities=17%  Similarity=0.237  Sum_probs=175.7

Q ss_pred             cCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEE
Q 017642          126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVY  199 (368)
Q Consensus       126 ~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vw  199 (368)
                      ++|...+.++.|.+ .+.++++++.|     +.|+||++.. +++++++. |..+|.+++|+.+|..+.   .|+.|++|
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD-----~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMD-----GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCC-----ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            48999999999998 78888999998     9999999876 89999998 999999999999998877   69999999


Q ss_pred             EcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeC
Q 017642          200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       200 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                      |+++|+++..+.. ....+++.|+|++.+++|+  |..|+.|+.|+... +.++.+..|-+.|..+.|-++|+++++.++
T Consensus       286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             ccccceEEEEEec-CCCceeeecCCCCCcEEEE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            9999999999863 4577899999999765554  67899999977654 666778889999999999999999999999


Q ss_pred             CCcEEEEEECCCCcee----------------------------------------------EeeEeccCcccEEEEEEe
Q 017642          279 KGTLVRIFNTLDGTLL----------------------------------------------QEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       279 dg~~i~iwd~~~~~~~----------------------------------------------~~~~~~~~~~~v~~l~~s  312 (368)
                      |+. ++||+.+..-.+                                              ..+.++.-.+.-..+.||
T Consensus       363 dks-~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  363 DKS-VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             Ccc-EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence            999 999997543111                                              112222223556789999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      |||.+|++|+.||.+.+||.++.+.......+
T Consensus       442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             CCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence            99999999999999999999998776655444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-22  Score=157.19  Aligned_cols=239  Identities=16%  Similarity=0.251  Sum_probs=189.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC------C----Cc---ceEEEcccCCceeEEEEEEeCCeEEEEecCC
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------F----RE---IFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  149 (368)
                      ....|.+++|+|.|.+.++|+ .++++|-....      .    ..   +.-+.- ..|...+.+.+|++.+..+++++.
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~-khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN-KHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec-cccCccEEEEEecCccCeEEecCC
Confidence            345899999999999999999 66666643211      0    00   111112 367888999999999999999999


Q ss_pred             CCCCCCCcEEEEeCCCCcE-----EEEEe-cCCceeEEEEeeC----ccEEE----eCCcEEEEEcCCCeEEEEEeccCC
Q 017642          150 DPQYPLNKVMIWDDHQSRC-----IGELS-FRSEVRSVKLRRD----RIIVV----LEQKIFVYNFADLKLLHQIETIAN  215 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~-----~~~~~-~~~~v~~~~~~~~----~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~  215 (368)
                      |     ..|++.-.+...+     -.++. |.+.|+.++|..+    +.+++    .|..|++-|...|+..+.+.+|.+
T Consensus       110 d-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  110 D-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             C-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence            8     9999987654432     23455 9999999999764    55666    477899999999999999999999


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeec--c-----CcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMA--H-----DSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~--~-----~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                      .|..+ +++++-   +..+|++|.+|++|+.... .+.++..  |     ...|.+++..|.|++|++|-.|.. ..+||
T Consensus       185 hilal-yswn~~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lyd  259 (350)
T KOG0641|consen  185 HILAL-YSWNGA---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYD  259 (350)
T ss_pred             cEEEE-EEecCc---EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEE
Confidence            88754 566664   3446999999999987753 3333321  2     256899999999999999999999 99999


Q ss_pred             CCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      ++.++.++.+..  |...|.++.|+|...+|++++.|..|++=|++-.
T Consensus       260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            999999999987  8899999999999999999999999999999754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.7e-24  Score=168.03  Aligned_cols=249  Identities=16%  Similarity=0.182  Sum_probs=194.3

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~  153 (368)
                      ..+-+.|.+.|..+...--|++||+++ |+.|+|+.+.+... ....++. +|...+..+.|..  -+.+|++++.|   
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYD---   79 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYD---   79 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecC---
Confidence            345678999999999888899999999 99999999987665 5556776 9999999999865  67899999998   


Q ss_pred             CCCcEEEEeCCCCcEEE--EEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCC---eEEEEEeccCCCeeEEEE
Q 017642          154 PLNKVMIWDDHQSRCIG--ELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAV  222 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~  222 (368)
                        |+|.||.-..++-.+  ++. |...|++++|.|.  |..|+   .||.|.|.+.++.   ...+....|.-.+++++|
T Consensus        80 --gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   80 --GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             --ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence              999999977774433  334 8999999999996  44555   7999999998653   123344678888999999


Q ss_pred             ecC---CC--------e-EEEEeecCCCCeEEEEecCc---ceeeeeeccCcceEEEEECCCC----CEEEEEeCCCcEE
Q 017642          223 SQG---VG--------S-LVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV  283 (368)
Q Consensus       223 ~~~---~~--------~-~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~g----~~l~s~~~dg~~i  283 (368)
                      .|.   |.        . .-++ +|+.|..|+||..+.   ..-+++.+|.+.|+.++|.|.-    .+||+++.||+ |
T Consensus       158 apa~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v  235 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V  235 (299)
T ss_pred             cCcCCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence            886   31        0 1244 477899999998887   5556689999999999999964    38999999999 9


Q ss_pred             EEEECCCC-ce-eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          284 RIFNTLDG-TL-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       284 ~iwd~~~~-~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      .||-.... +. ..++.. .....++.+.||..|+.|++++.|+.|.+|.-...
T Consensus       236 iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            99976521 11 111111 13457999999999999999999999999976543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-22  Score=154.82  Aligned_cols=246  Identities=11%  Similarity=0.131  Sum_probs=188.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcce---EEEcccCCceeEEEEEEeC----CeEEEEecCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRC----NILALVGGGP  149 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~  149 (368)
                      ......|.+.|+|.+|+|+|++|++|+ |+.|++...+...+..   ..+|. -|...+.+++|-.    .+..+++++.
T Consensus        82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC
Confidence            345668999999999999999999999 8889887665433221   12343 5677788888743    4556666554


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec--c-----CCCee
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET--I-----ANPKG  218 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~--~-----~~~v~  218 (368)
                      .    |..|++-|..+|+..+.+. |.+.|.++- +=++-.++   .|.+|++||++-..++.++..  |     ...|.
T Consensus       161 g----dc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  161 G----DCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             C----cceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence            2    2778888999999999988 999988773 33455555   589999999998888887742  1     24678


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeE
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQ  295 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~  295 (368)
                      .+++.|.|+  +++ +|..|....+++.. ++.++.+..|...|+|+.|+|...||++++.|.. |++-|+...  +.+.
T Consensus       236 av~vdpsgr--ll~-sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~  311 (350)
T KOG0641|consen  236 AVAVDPSGR--LLA-SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELP  311 (350)
T ss_pred             EEEECCCcc--eee-eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCc
Confidence            899999997  345 58889999995554 5788899999999999999999999999999999 999998532  1111


Q ss_pred             eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      .+....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus       312 ~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  312 IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            22223377888899999999889999999999999764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=8.2e-25  Score=177.69  Aligned_cols=210  Identities=17%  Similarity=0.262  Sum_probs=178.6

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe---------cCCceeEEEEeeCccEEE---eCC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---------FRSEVRSVKLRRDRIIVV---LEQ  194 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~---~d~  194 (368)
                      +....+-+..|+|++.++++++.|     |-|.+||..+|+..+.++         +...|.|+.|+.|...++   .||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvD-----GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVD-----GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             ccccchhheeeCCCCceEeecccc-----ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence            556667788999999999999998     999999999987665442         678999999999999998   599


Q ss_pred             cEEEEEcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCE
Q 017642          195 KIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQL  272 (368)
Q Consensus       195 ~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~  272 (368)
                      .|++|.+++|.|++.|. .|...|+++.|+.|+..++   +++.|.++++ -...++.++.+.+|...|+...|.+||.+
T Consensus       286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL---S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~  362 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL---SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH  362 (508)
T ss_pred             cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh---cccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence            99999999999999996 7999999999999998743   4778999999 66778899999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEECCCCceeEeeEe--------------------------------------------c-cCcccEE
Q 017642          273 LATSSTKGTLVRIFNTLDGTLLQEVRR--------------------------------------------G-ADRAEIY  307 (368)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~~--------------------------------------------~-~~~~~v~  307 (368)
                      +++++.||+ |+||+.++.+++.+|+.                                            + ...+...
T Consensus       363 iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi  441 (508)
T KOG0275|consen  363 IISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI  441 (508)
T ss_pred             EEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence            999999999 99999987766555442                                            1 1223455


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCC
Q 017642          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS  345 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  345 (368)
                      +.+.+|.|.++.+.++|+.++.|.+.+++-+....-+.
T Consensus       442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence            66789999999999999999999999998776555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=3.4e-23  Score=192.28  Aligned_cols=247  Identities=19%  Similarity=0.217  Sum_probs=198.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCc----------ceEEEcccCCceeEEEEEEeCCeEEEEecC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFRE----------IFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  148 (368)
                      ..+...|.++..+|||..+|+|+   |++++||+.+....          ...... ..|...+.++.|++++.++++|+
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeecc
Confidence            34555799999999999999998   77888999754221          111122 37888999999999999999999


Q ss_pred             CCCCCCCCcEEEEeCCC------------------CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE
Q 017642          149 PDPQYPLNKVMIWDDHQ------------------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL  206 (368)
Q Consensus       149 ~d~~~~~~~i~vwd~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~  206 (368)
                      +|     +.|.||+...                  .+++..+. |...|..++|+|++.+++   .|++|.+||.+++++
T Consensus        89 DD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   89 DD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             Cc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence            98     9999998662                  13556666 999999999999999999   699999999999999


Q ss_pred             EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeecc------CcceEEEEECCCCCEEEEEeC-
Q 017642          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAH------DSRIACFALTQDGQLLATSST-  278 (368)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~------~~~i~~v~~sp~g~~l~s~~~-  278 (368)
                      +..+++|...|..+.|.|-|++  +|+ -+.|++|+||... ....+.+.++      ......+.|+|||++|++... 
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gky--~AS-qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGKY--FAS-QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             eeeeecccccccceEECCccCe--eee-ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            9999999999999999999995  554 6689999999844 3455555443      235788999999999998643 


Q ss_pred             ---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC-----CC------------EEEEEeCCCeEEEEEccCCCCC
Q 017642          279 ---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQ------------WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       279 ---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~------------~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                         -.. +.|.+..+.+.-..|.+  |.+++.++.|+|.     .+            .+|+|+.|++|-||.....++.
T Consensus       241 n~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  241 NGGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             cCCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence               224 89999888887788888  7889999999872     11            6788999999999999766654


Q ss_pred             CC
Q 017642          339 AR  340 (368)
Q Consensus       339 ~~  340 (368)
                      -.
T Consensus       318 ~v  319 (942)
T KOG0973|consen  318 FV  319 (942)
T ss_pred             hh
Confidence            33

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=6.3e-23  Score=165.63  Aligned_cols=243  Identities=19%  Similarity=0.301  Sum_probs=188.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ...-.|..++++++|.++.+ +++|+ |+.|+++|+++......    ..|...+.++.+....-.+++++.|     ++
T Consensus        48 ~~~~~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~i----gth~~~i~ci~~~~~~~~vIsgsWD-----~~  117 (323)
T KOG1036|consen   48 KLKFKHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQI----GTHDEGIRCIEYSYEVGCVISGSWD-----KT  117 (323)
T ss_pred             hhheecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceee----ccCCCceEEEEeeccCCeEEEcccC-----cc
Confidence            34457888999999998655 55555 99999999998766532    2688888999998877888999998     99


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEE--eccCCCeeEEEEecCCCeEEEEee
Q 017642          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      |++||.+....+..+.....|.++....+..++. .|..+.+||+++.......  ......+.++++-|++...++   
T Consensus       118 ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~---  194 (323)
T KOG1036|consen  118 IKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV---  194 (323)
T ss_pred             EEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE---
Confidence            9999998877777777777999999988777665 7999999999886543322  123456789999997776432   


Q ss_pred             cCCCCeEEEEecC-c----ceeeeeeccCc---------ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          235 GLQKGQVRVEHYA-S----KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       235 g~~dg~i~i~~~~-~----~~~~~~~~~~~---------~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                      ++-||.|.+...+ .    .....++.|..         +|++|+|+|-...||||+.||. |.+||+.+.+.+..+.. 
T Consensus       195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~-  272 (323)
T KOG1036|consen  195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK-  272 (323)
T ss_pred             EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC-
Confidence            5689999993222 2    33345666643         7999999999889999999999 99999999999988887 


Q ss_pred             cCcccEEEEEEecCCCEEEEEeC-----CCe-------EEEEEccCCCC
Q 017642          301 ADRAEIYSLAFSSNAQWLAVSSD-----KGT-------VHVFNLKVNSG  337 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~~~l~s~s~-----dg~-------i~iwd~~~~~~  337 (368)
                       ....|.+++|+.||..||.++.     ...       |.|.++.+.+.
T Consensus       273 -~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e~  320 (323)
T KOG1036|consen  273 -YETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYET  320 (323)
T ss_pred             -CCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecccccc
Confidence             5678999999999999998863     122       66666655444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.7e-24  Score=183.96  Aligned_cols=235  Identities=11%  Similarity=0.207  Sum_probs=202.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ..+-|.++.+.|||+.|++|+ -.++.|||+......+...+. ...-.+.+++.+++..+.+++..|     |.|.|||
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsd-----GnI~vwD  537 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSD-----GNIAVWD  537 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccC-----CcEEEEE
Confidence            456788999999999999999 555999999877666555554 455567788889988888887777     9999999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      +.+...++.|+ |.+.+.||.+++||..+.   .|++|+.||+++++.+.... ....|.++..+|.+++++  . |..+
T Consensus       538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWla--v-GMen  613 (705)
T KOG0639|consen  538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLA--V-GMEN  613 (705)
T ss_pred             cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcccee--e-eccc
Confidence            99999999999 999999999999999888   68999999999988766543 456788899999999744  3 7788


Q ss_pred             CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE
Q 017642          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  318 (368)
                      +.+.|-..++.....+.-|+..|.++.|.+.|+++++.+.|.. +..|.+.-|..+...+   ....|.++.+|-|.+++
T Consensus       614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI  689 (705)
T ss_pred             CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence            9998877777777788899999999999999999999999999 9999999898887776   46789999999999999


Q ss_pred             EEEeCCCeEEEEEc
Q 017642          319 AVSSDKGTVHVFNL  332 (368)
Q Consensus       319 ~s~s~dg~i~iwd~  332 (368)
                      ++|+.|....||.+
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999998888876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.6e-22  Score=163.27  Aligned_cols=245  Identities=14%  Similarity=0.163  Sum_probs=183.8

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+.+.|.+|.|+|.+..|++++ |+.+++|++......  ..+  .+...+++++|.+....+.++ -|     |.|+.+
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~--~~~~plL~c~F~d~~~~~~G~-~d-----g~vr~~   80 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKF--KHGAPLLDCAFADESTIVTGG-LD-----GQVRRY   80 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhe--ecCCceeeeeccCCceEEEec-cC-----ceEEEE
Confidence            3467899999999888887777 999999999876444  445  577889999998866655554 44     999999


Q ss_pred             eCCCCcEEEEEecCCceeEEEEeeC-ccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          162 DDHQSRCIGELSFRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       162 d~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      |+++++....-.|...|.++.+.+. +.++.  .|++|++||.+.......+.. ...|.++.  -.++.+++   |..+
T Consensus        81 Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~--v~g~~LvV---g~~~  154 (323)
T KOG1036|consen   81 DLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD--VSGNRLVV---GTSD  154 (323)
T ss_pred             EecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEe--ccCCEEEE---eecC
Confidence            9999988877779999999999975 44444  799999999987555555543 33555444  45665444   4478


Q ss_pred             CeEEEEecCcce-eee--eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----ceeEeeEeccC-------cc
Q 017642          239 GQVRVEHYASKR-TKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGAD-------RA  304 (368)
Q Consensus       239 g~i~i~~~~~~~-~~~--~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~~~~-------~~  304 (368)
                      ..+.+|+...-. ...  -..-+-.++||++-|++.=+++++-||+ |.+=.+...    +..+.|+.|..       --
T Consensus       155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            999997765422 211  1223456899999998888899999998 777655544    34445555211       13


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      +|++|+|+|-.+.|++|+.||.|-+||+.+.++..+....
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            7999999999999999999999999999999988776655

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=8.4e-23  Score=164.41  Aligned_cols=228  Identities=18%  Similarity=0.220  Sum_probs=181.1

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL  155 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~  155 (368)
                      .....|.++|.+++|+.||..+++|+ |+.+++||+.+++...   +. .|...+..+.|-+.  ...|++|+.|     
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~---v~-~Hd~pvkt~~wv~~~~~~cl~TGSWD-----  136 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ---VA-AHDAPVKTCHWVPGMNYQCLVTGSWD-----  136 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee---ee-ecccceeEEEEecCCCcceeEecccc-----
Confidence            55668999999999999999999888 9999999999875442   22 56666666666554  5599999999     


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEE-EE-eccCCCeeEEEEecCCCeEEEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLH-QI-ETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~-~~-~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      ++|++||.+...++.++...+.++++..-..-..++ .+..|.+|+++++.... .+ ......+++++...+.+..+| 
T Consensus       137 KTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al-  215 (347)
T KOG0647|consen  137 KTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL-  215 (347)
T ss_pred             cceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe-
Confidence            999999999999999999999999998876666666 79999999997764321 11 123346788999999887543 


Q ss_pred             eecCCCCeEEE-EecCc--ceeeeeeccCc---------ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          233 CPGLQKGQVRV-EHYAS--KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       233 ~~g~~dg~i~i-~~~~~--~~~~~~~~~~~---------~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                        |+-+|.+.| +....  ..-..++.|..         .|++|+|+|....|++++.||+ +.+||-.....+.+... 
T Consensus       216 --GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~-  291 (347)
T KOG0647|consen  216 --GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET-  291 (347)
T ss_pred             --eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc-
Confidence              778999998 33332  34445666763         4788999998889999999999 99999877777777776 


Q ss_pred             cCcccEEEEEEecCCCEEEEE
Q 017642          301 ADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~~~l~s~  321 (368)
                       |..+|++.+|+.+|.+++-+
T Consensus       292 -~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  292 -HPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             -CCCccceeEecCCCCEEEEE
Confidence             78999999999999998765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.8e-23  Score=176.31  Aligned_cols=247  Identities=13%  Similarity=0.158  Sum_probs=197.3

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc-eEEEcc-cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI-FRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      .-.|..-|.++++|...+++.+|+.+.|+|||+...... -...+. ......+.++...+++..++.|+.-     .+|
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stl  489 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STL  489 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----cee
Confidence            346888888899999999999999999999999643321 111111 1355667788888888888887775     899


Q ss_pred             EEEeCCCCcEEE--EEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          159 MIWDDHQSRCIG--ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       159 ~vwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      .|||+.......  ++. ..-..++++.+||.++.+   .||.|.|||+.+...++.|++|.+.+.|+.+++||..++  
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW--  567 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW--  567 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee--
Confidence            999998665433  333 345678899999998887   799999999999999999999999999999999998755  


Q ss_pred             eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                       +|+-|.+||.|+........-......|.++..+|++.+|+.|-+++. +.|......+ .+.+..  |...|.++.|.
T Consensus       568 -TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~-kyqlhl--heScVLSlKFa  642 (705)
T KOG0639|consen  568 -TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPE-KYQLHL--HESCVLSLKFA  642 (705)
T ss_pred             -cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCcc-ceeecc--cccEEEEEEec
Confidence             588999999998765443333344567999999999999999999998 8888754333 334444  88999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +.|+++++.+.|+.+-.|..--+..+=
T Consensus       643 ~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  643 YCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             ccCceeeecCchhhhhhccCcccccee
Confidence            999999999999999999988776653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=7e-23  Score=164.40  Aligned_cols=209  Identities=12%  Similarity=0.203  Sum_probs=165.9

Q ss_pred             CCcccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcc----------e--EEEcccCCceeEEEEEEeC-C
Q 017642           76 PAESTSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREI----------F--RRDFERGGGIGVVEMLFRC-N  140 (368)
Q Consensus        76 ~~~~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~-~  140 (368)
                      ......+.|.+.|+++...+ .|+++++|+ |+.|.|||+++....          +  .+.-+..|...+..+.|-| +
T Consensus        34 ~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   34 NDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             CCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            34456678999999999987 589999999 888999999764311          0  1111245677777777765 3


Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC---ccEEE---eCCcEEEEEcCCCeEEEEEeccC
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---RIIVV---LEQKIFVYNFADLKLLHQIETIA  214 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~---~d~~i~vwd~~~~~~~~~~~~~~  214 (368)
                      .-.+.+++-|     .++++||.++-+....|+.++.|+.-+++|-   ..+++   .|-.|++-|+.+|...+++.+|.
T Consensus       114 tGmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr  188 (397)
T KOG4283|consen  114 TGMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR  188 (397)
T ss_pred             Cceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence            3345566666     9999999999999999999999999999983   33444   47799999999999999999999


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc--eee--------------eeeccCcceEEEEECCCCCEEEEEeC
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTK--------------FIMAHDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~--------------~~~~~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                      +.|.++.|+|..++  +.++|+.||.|++|+....  +..              .-.+|.+.+..++|..+|.++++++.
T Consensus       189 ~~vlaV~Wsp~~e~--vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEW--VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             CceEEEEeccCcee--EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            99999999999885  3445999999999987541  221              22357788999999999999999999


Q ss_pred             CCcEEEEEECCCCc
Q 017642          279 KGTLVRIFNTLDGT  292 (368)
Q Consensus       279 dg~~i~iwd~~~~~  292 (368)
                      |.. +++|+..+|+
T Consensus       267 d~r-~r~wn~~~G~  279 (397)
T KOG4283|consen  267 DDR-IRVWNMESGR  279 (397)
T ss_pred             ccc-eEEeecccCc
Confidence            999 9999998764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=1.7e-22  Score=169.97  Aligned_cols=240  Identities=15%  Similarity=0.157  Sum_probs=198.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .+..+|.-.|+.+.|+++...+++++ |..|+||.........  ... .|...|..+..++.+.++++++.|     +.
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--~~~-~h~~~V~~ls~h~tgeYllsAs~d-----~~  326 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--SSR-PHEEPVTGLSLHPTGEYLLSASND-----GT  326 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--ccc-cccccceeeeeccCCcEEEEecCC-----ce
Confidence            56678999999999999999999999 8889999986655432  232 788889999999999999999998     99


Q ss_pred             EEEEeCCCCcEEEEEecC---CceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          158 VMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ..+.|++++..+....+.   -.+++.+|+|||.++.   .|+.|++||+.++..+..|.+|.++|..++|+.+|-+  +
T Consensus       327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~--L  404 (506)
T KOG0289|consen  327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW--L  404 (506)
T ss_pred             EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceE--E
Confidence            999999999988887754   3589999999999998   6999999999999999999999999999999998854  4


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECC--CCceeEeeEeccCcccEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~--~~~~~~~~~~~~~~~~v~  307 (368)
                      ++ +.+|+.|++|+.+. +..+++.. ...++.++.|.+.|++|+.++.|=. |++++-.  +..++..+..  |.+..+
T Consensus       405 at-~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~-Vy~~~k~~k~W~~~~~~~~--~sg~st  480 (506)
T KOG0289|consen  405 AT-AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ-VYICKKKTKSWTEIKELAD--HSGLST  480 (506)
T ss_pred             EE-EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE-EEEEecccccceeeehhhh--cccccc
Confidence            43 55899999988765 44444432 2337999999999999999988755 5555522  4566666665  777899


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          308 SLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      ++.|..+.+++++++.|..++++.+
T Consensus       481 ~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  481 GVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeecccceEEeeccchhheEEeec
Confidence            9999999999999999999998865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=9.6e-23  Score=180.67  Aligned_cols=235  Identities=16%  Similarity=0.239  Sum_probs=194.5

Q ss_pred             cCCCCCEEE-EEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           82 SSPPPTLLH-ISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        82 ~~h~~~v~~-~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ..|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........  ..+. +|...|.+++...+.. +++++.|     .++
T Consensus        54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~iSgSWD-----~Ta  124 (745)
T KOG0301|consen   54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-LISGSWD-----STA  124 (745)
T ss_pred             ccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-eEecccc-----cce
Confidence            356666666 77764 444566777 888999998776665  4565 8999999999877777 8899998     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ++|-.  +++...+. |...|++++.-|++.++.  .|.+|++|.  .++++++|.+|.+-|+.+++-+++.  ++.  +
T Consensus       125 kvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~--flS--c  196 (745)
T KOG0301|consen  125 KVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH--FLS--C  196 (745)
T ss_pred             EEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC--eEe--e
Confidence            99974  45555677 999999999999997777  799999998  4889999999999999999998875  343  5


Q ss_pred             CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      +.||.|++|+.++..+..+.+|...|+++....++..++++++|++ ++||+..  ++.+.+..  ....|+++.+-++|
T Consensus       197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNG  271 (745)
T ss_pred             cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCC
Confidence            6899999999999999999999999999998888889999999999 9999865  77777774  23489999999988


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCC
Q 017642          316 QWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      .. ++|+.||.||||.....+...
T Consensus       272 DI-vvg~SDG~VrVfT~~k~R~As  294 (745)
T KOG0301|consen  272 DI-VVGGSDGRVRVFTVDKDRKAS  294 (745)
T ss_pred             CE-EEeccCceEEEEEecccccCC
Confidence            75 567789999999988655443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.9e-22  Score=182.06  Aligned_cols=244  Identities=15%  Similarity=0.172  Sum_probs=196.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ..-.|...-+.|+|.++|++|++++ |+.|++|+........ ..+. .+...+.+++...+  .+++++.+     ++|
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~-~~g~~v~~ia~~s~--~f~~~s~~-----~tv   78 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETID-ISGELVSSIACYSN--HFLTGSEQ-----NTV   78 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhh-ccCceeEEEeeccc--ceEEeecc-----ceE
Confidence            3457999999999999999998888 8889999976553221 2221 25566666666555  55666666     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      .+|.+..++.-..+. ..-++++++++.+|.+++   .|-.|++.++.+......+.+|..+|.++.|+|.++.  ||+ 
T Consensus        79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f--LAv-  155 (933)
T KOG1274|consen   79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF--LAV-  155 (933)
T ss_pred             EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE--EEE-
Confidence            999999887665555 778899999999999998   5779999999999889999999999999999999985  443 


Q ss_pred             cCCCCeEEEEecCcceeee-eec-------c-CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          235 GLQKGQVRVEHYASKRTKF-IMA-------H-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       235 g~~dg~i~i~~~~~~~~~~-~~~-------~-~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      .+-||.|++|+...+.+.. +.+       - ...+..++|+|+|..|+....|+. |++|+...++....++...+...
T Consensus       156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~  234 (933)
T KOG1274|consen  156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSK  234 (933)
T ss_pred             EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccc
Confidence            3469999999987644332 211       1 345678999999888888888999 99999999999999987766667


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +..++|+|+|+|||+++.||.|.|||+++-.
T Consensus       235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~  265 (933)
T KOG1274|consen  235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHE  265 (933)
T ss_pred             eEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence            9999999999999999999999999999733

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.2e-23  Score=186.46  Aligned_cols=204  Identities=13%  Similarity=0.188  Sum_probs=170.7

Q ss_pred             cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC----------------------------------------
Q 017642          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ----------------------------------------  165 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~----------------------------------------  165 (368)
                      ..|...|+++.|+++|.++|+++.|     +.|+||.+..                                        
T Consensus       264 ~ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             cccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            3788999999999999999999999     9999997654                                        


Q ss_pred             --------------------CcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEE
Q 017642          166 --------------------SRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (368)
Q Consensus       166 --------------------~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  222 (368)
                                          .++++.+. |.+.|.++.|+.++.+|.  .|.+|+||++...+|+..|. |.+-|+|++|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence                                01223334 788999999999998887  79999999999999999995 8999999999


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                      +|-.+..++  +|+-||.++||......+.....-..-|++++|.|||++.+.|+.+|. +++|++...+....+....+
T Consensus       418 nPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  418 NPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             cccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeec
Confidence            998887444  599999999999999888887776788999999999999999999999 99999988776655543211


Q ss_pred             ------cccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642          303 ------RAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       303 ------~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                            ...|+.+.|.|... .|++.+.|..|||||.++.+..
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv  537 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV  537 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence                  22799999997443 4667788999999999665443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.2e-23  Score=175.93  Aligned_cols=205  Identities=18%  Similarity=0.307  Sum_probs=158.4

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ..+..+|..+|..+.||||.++|++++ +..+.+||+.++...  ..+.+++...+.+++|.|++..+++|+.|     +
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r  334 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----R  334 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCC-----C
Confidence            345678999999999999999998888 888999999988776  34544567888999999999999999998     8


Q ss_pred             cEEEEeCCCC----------------------cEEE--------------------EEecCCceeEEEEeeCccEEE---
Q 017642          157 KVMIWDDHQS----------------------RCIG--------------------ELSFRSEVRSVKLRRDRIIVV---  191 (368)
Q Consensus       157 ~i~vwd~~~~----------------------~~~~--------------------~~~~~~~v~~~~~~~~~~~l~---  191 (368)
                      .+..||+...                      +.+.                    .+....+|+++.++.|++++.   
T Consensus       335 ~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  335 TIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             cEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence            8888876532                      1111                    011345788888888888877   


Q ss_pred             eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCC
Q 017642          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDG  270 (368)
Q Consensus       192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g  270 (368)
                      .+..|++||++..+.++.+.+|...-..+.-+..|..--++.+|++|+.|+||... ++.+..+.+|...|+||+|+|..
T Consensus       415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence            58889999998888888887776654444333333221233469999999998765 57788899999999999999966


Q ss_pred             C-EEEEEeCCCcEEEEEECCC
Q 017642          271 Q-LLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       271 ~-~l~s~~~dg~~i~iwd~~~  290 (368)
                      . ++|++++||+ ||||-...
T Consensus       495 p~m~ASasDDgt-IRIWg~~~  514 (519)
T KOG0293|consen  495 PEMFASASDDGT-IRIWGPSD  514 (519)
T ss_pred             HHHhhccCCCCe-EEEecCCc
Confidence            5 8999999999 99997653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=5e-22  Score=177.67  Aligned_cols=241  Identities=15%  Similarity=0.264  Sum_probs=200.5

Q ss_pred             CCCEEEEEEcCCCC---EEEEEeCCeEEEEEecCCCcc-------eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           85 PPTLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        85 ~~~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      ...|-++.|-|.+.   .|+.-.++.+..|.++.....       ....+ .+|+..|..++++.+..++++++.     
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~Sga~-----  393 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLASGAG-----  393 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeeecCC-----
Confidence            34788888877654   445545888999988762211       11233 389999999999999999999887     


Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                       +.|++|+..+.++++++... .+.+..|-|.+++++   ..|.+.+||+.+...+.+++.|.+.++.++.+||+..++ 
T Consensus       394 -~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v-  470 (888)
T KOG0306|consen  394 -ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV-  470 (888)
T ss_pred             -CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE-
Confidence             79999999999999999855 788999999888887   589999999999999999999999999999999999854 


Q ss_pred             EeecCCCCeEEEEecCcc------eeeeee-------ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          232 VCPGLQKGQVRVEHYASK------RTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~------~~~~~~-------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                        +|+.|.+|++|+....      ..+.+.       .-...|.|+.+||||++||.+=-|.+ |+||-+.+.+....+.
T Consensus       471 --T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT-VkVyflDtlKFflsLY  547 (888)
T KOG0306|consen  471 --TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT-VKVYFLDTLKFFLSLY  547 (888)
T ss_pred             --EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe-EEEEEecceeeeeeec
Confidence              3678999999986531      111111       23457999999999999999999999 9999999999988998


Q ss_pred             eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       299 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +  |.-+|.+|..|||++.+++||.|.+|+||-++-|.-.+
T Consensus       548 G--HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  548 G--HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             c--cccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence            8  88999999999999999999999999999998886654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.3e-21  Score=156.40  Aligned_cols=241  Identities=13%  Similarity=0.175  Sum_probs=187.7

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      +...+.-.|..++|......++.++   |..||..++.+.+.+  +-|. +|...|..+..+|....+++++.|     +
T Consensus        51 ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl--RYF~-GH~~~V~sL~~sP~~d~FlS~S~D-----~  122 (311)
T KOG1446|consen   51 TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL--RYFP-GHKKRVNSLSVSPKDDTFLSSSLD-----K  122 (311)
T ss_pred             EeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE--EEcC-CCCceEEEEEecCCCCeEEecccC-----C
Confidence            3344556788889976655555444   777999999876655  7786 999999999999999999999998     9


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e-CCcEEEEEcCCC--eEEEEEe---ccCCCeeEEEEecCCCe
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADL--KLLHQIE---TIANPKGLCAVSQGVGS  228 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~  228 (368)
                      +|++||++..++...+...+ -..++|.|+|.+++  . .+.|++||++..  .+..++.   ........+.|++||+.
T Consensus       123 tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~  201 (311)
T KOG1446|consen  123 TVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS  201 (311)
T ss_pred             eEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence            99999999888877766332 33578999999998  2 338999999864  3334443   23556788999999998


Q ss_pred             EEEEeecCCCCeEEE-EecCcceeeeeeccCcce---EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642          229 LVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRI---ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i---~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      ++|.+   ..+.+++ +..++.....+..+...-   -...|.||++++++|+.||+ |.+|++++++.+..+.+. +.+
T Consensus       202 iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~-i~vw~~~tg~~v~~~~~~-~~~  276 (311)
T KOG1446|consen  202 ILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT-IHVWNLETGKKVAVLRGP-NGG  276 (311)
T ss_pred             EEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc-EEEEEcCCCcEeeEecCC-CCC
Confidence            66644   5677777 888888777777665432   56789999999999999999 999999999999999875 578


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ++.++.|+|.-.+++++  +..+-+|=....+
T Consensus       277 ~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  277 PVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA  306 (311)
T ss_pred             CccccccCCceeeeeec--CceEEEEeccccc
Confidence            99999999977666665  5678888665433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.7e-22  Score=160.06  Aligned_cols=245  Identities=17%  Similarity=0.250  Sum_probs=177.1

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE--EEcccCCceeEEEEEEe--CCeEEEEecCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFR--CNILALVGGGPDPQY  153 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~  153 (368)
                      .+.+.|.+-|+++.|.+-|+.+|+|+ |..++|||.+.......  ...+ .|...+..+.|.  .=|.++++++.|   
T Consensus         7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~D---   82 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYD---   82 (361)
T ss_pred             ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecC---
Confidence            35568999999999999999999999 88899999765555433  3333 677777777774  347889999998   


Q ss_pred             CCCcEEEEeCCC---------CcEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCe------EEEEEe-
Q 017642          154 PLNKVMIWDDHQ---------SRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK------LLHQIE-  211 (368)
Q Consensus       154 ~~~~i~vwd~~~---------~~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~------~~~~~~-  211 (368)
                        +++.||.-..         .....++. ....|+++.|.|.  |..++   .||.++||+.-+.-      +...+. 
T Consensus        83 --rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   83 --RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             --CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence              9999998421         12233444 7789999999995  55555   69999999875432      222222 


Q ss_pred             ------ccCCCeeEEEEecCCCe-EEEEeecCCC-----CeEEEEecCc-----ceeeeeeccCcceEEEEECCCC----
Q 017642          212 ------TIANPKGLCAVSQGVGS-LVLVCPGLQK-----GQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDG----  270 (368)
Q Consensus       212 ------~~~~~v~~~~~~~~~~~-~~l~~~g~~d-----g~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~g----  270 (368)
                            .+..+..|+.|++..-. .++|. |+.+     +.+.||....     ..+..+.+|..+|+.|+|.|+-    
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                  23445667778754321 24444 5443     3677754433     3345677899999999999953    


Q ss_pred             CEEEEEeCCCcEEEEEECCCC--------------------ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642          271 QLLATSSTKGTLVRIFNTLDG--------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                      .+||+++.||  |+||.+...                    +.+..+..  |.+.|+.+.|+-.|..|++.++||.||+|
T Consensus       240 ~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  240 HLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             eeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence            4899999999  899998631                    22333444  88999999999999999999999999999


Q ss_pred             EccC
Q 017642          331 NLKV  334 (368)
Q Consensus       331 d~~~  334 (368)
                      ...-
T Consensus       316 kany  319 (361)
T KOG2445|consen  316 KANY  319 (361)
T ss_pred             hhhh
Confidence            7653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=2.7e-22  Score=169.98  Aligned_cols=236  Identities=19%  Similarity=0.270  Sum_probs=187.9

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ..|...|.+++.++||+|||+|+ |..|.||+.++.+..  +.+. +|...|.+++|.....-+.+++.|     +.|++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s~D-----rsvkv  270 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSASAD-----RSVKV  270 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeeecC-----CceEE
Confidence            38999999999999999999999 888999999987776  4465 899999999998877777777777     99999


Q ss_pred             EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      |+++....+.++- |.+.|.++....-++.+.   .|.++++|++... ....+.++.+.+.|++|-.+..   ++ +|+
T Consensus       271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H---fv-sGS  345 (479)
T KOG0299|consen  271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH---FV-SGS  345 (479)
T ss_pred             EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc---ee-ecc
Confidence            9999888777766 999999999888777776   6999999999443 3345667888899999987765   34 499


Q ss_pred             CCCeEEEEecCcc-eeeeee-cc-----------CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----ceeEeeEe
Q 017642          237 QKGQVRVEHYASK-RTKFIM-AH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRR  299 (368)
Q Consensus       237 ~dg~i~i~~~~~~-~~~~~~-~~-----------~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~  299 (368)
                      .+|.|.+|....+ ++.+.. +|           ...|++++..|...++++|+.+|. |++|-+..+    +++..+. 
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls-  423 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS-  423 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc-
Confidence            9999999886653 332221 12           237999999999999999999999 999999877    3444554 


Q ss_pred             ccCcccEEEEEEecCCCEEEEE-eCCCeEEEEEccC
Q 017642          300 GADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~  334 (368)
                        -.+.|++|+|+++|+.+++| +....+--|-...
T Consensus       424 --~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  424 --LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             --cccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence              36789999999999966655 4555555555443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.9e-22  Score=163.54  Aligned_cols=242  Identities=15%  Similarity=0.232  Sum_probs=201.2

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....+|.+.|+.++.......+.+++ |.+.+||.++.+.+...  +. +|...+.++.|++.+.++++++.|     ++
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--Y~-GH~GSVNsikfh~s~~L~lTaSGD-----~t  213 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--YT-GHTGSVNSIKFHNSGLLLLTASGD-----ET  213 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee--ec-ccccceeeEEeccccceEEEccCC-----cc
Confidence            44678999999999887777888888 99999999999888744  44 899999999999999999999888     88


Q ss_pred             EEEEe------CCC------------------------------C----cEEEEEe-cCCceeEEEEeeCccEEE---eC
Q 017642          158 VMIWD------DHQ------------------------------S----RCIGELS-FRSEVRSVKLRRDRIIVV---LE  193 (368)
Q Consensus       158 i~vwd------~~~------------------------------~----~~~~~~~-~~~~v~~~~~~~~~~~l~---~d  193 (368)
                      -.||.      +..                              +    .++..+. |...|.+..|...|..++   .|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            88884      111                              0    1334455 778888888988888777   69


Q ss_pred             CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC
Q 017642          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ  271 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~  271 (368)
                      .+..+||+++|+.+..+.+|....+.++-+|..+   |+.+.+.|.+.++|+...  ..+..|.+|...|+++.|.-+. 
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr---LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-  369 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQR---LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-  369 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcce---EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-
Confidence            9999999999999999999999999999888876   333478999999999875  4566789999999999998765 


Q ss_pred             EEEEEeCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          272 LLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .+++|+.|.+ |+|||+++.. ++.+++.   ..+++.++.+..+..++.--+++.|++||++-..
T Consensus       370 ~vVSgSDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  370 RVVSGSDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             ceeecCCCce-EEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            5889999999 9999999865 5666664   5689999999888888888888999999997543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.5e-22  Score=179.38  Aligned_cols=235  Identities=15%  Similarity=0.255  Sum_probs=192.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEE-EEEeC-CeEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC-NILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~s~~~d~~~~~~  156 (368)
                      ...+|...|..+++.+.. ++++++ |+++++|+-...+......+. ++...+.. +++.+ +.-.++.++.|     .
T Consensus         9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D-----~   81 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMD-----T   81 (745)
T ss_pred             EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeeccc-----c
Confidence            456899999998887655 566666 889999996544444333443 34443333 55543 33346677777     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      .|.+|...+..+...+. |...|.++....++.++.  .|.++++|-.  +++...+.+|...|+++..-|++.   ++ 
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~---~v-  155 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENT---YV-  155 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCc---EE-
Confidence            99999999999999998 999999999999988555  6999999985  566777899999999999888873   33 


Q ss_pred             ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      +|+.|.+|++|.- ++.++++.+|...|+.+++-+++ .+++++.||. |++|++ +|+++.++.+  |...|.++....
T Consensus       156 TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~~  229 (745)
T KOG0301|consen  156 TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMAL  229 (745)
T ss_pred             eccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEecC
Confidence            4889999999976 78889999999999999998775 4789999999 999998 8999999998  889999999888


Q ss_pred             CCCEEEEEeCCCeEEEEEcc
Q 017642          314 NAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ++..++++++|++++||+..
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CCCeEEEecCCceEEEeecC
Confidence            88999999999999999987

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=5.2e-23  Score=166.26  Aligned_cols=209  Identities=14%  Similarity=0.233  Sum_probs=173.6

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC------------C------cEEEEEe-cCCceeEEEEeeCc
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------------S------RCIGELS-FRSEVRSVKLRRDR  187 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~------------~------~~~~~~~-~~~~v~~~~~~~~~  187 (368)
                      .|...+.+.+|++++.++++|+.|     ..|+|+|++.            +      -.++++- |.+.|.++.|+|..
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            688889999999999999999998     9999999862            1      1345554 99999999999999


Q ss_pred             cEEE---eCCcEEEEEcCCCeE---EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee----eecc
Q 017642          188 IIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAH  257 (368)
Q Consensus       188 ~~l~---~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~----~~~~  257 (368)
                      .+++   .|++|++||+.....   .+.+. ...++.++.|+|.|+.+++   |.....+++++.+..+...    -..|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllv---gTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLV---GTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEE---ecCCCceeEEeccceeEeeecCccccc
Confidence            9988   599999999965322   22332 3458999999999996443   6678899997776643222    3468


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+.|+++.+++.|++.++++.||. |+|||--+++++.++...+....|.+..|..+|+++++.+.|..+++|.+.+++.
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            999999999999999999999999 9999999999999888664556899999999999999999999999999999988


Q ss_pred             CCCCCCCC
Q 017642          338 SARSEPRS  345 (368)
Q Consensus       338 ~~~~~~~~  345 (368)
                      .....+.+
T Consensus       340 l~~YtGAg  347 (430)
T KOG0640|consen  340 LKEYTGAG  347 (430)
T ss_pred             EEEEecCC
Confidence            87766653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.6e-22  Score=167.00  Aligned_cols=239  Identities=19%  Similarity=0.262  Sum_probs=179.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vw  161 (368)
                      ..+.|++|.|+|...+|++++ |+.++||.++.........+. -....+.+..|.+++. .+++++..     ..++.|
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysy  285 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSY  285 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccc-----eEEEEe
Confidence            356899999999999998888 999999999865544433332 3455566666766666 55555554     566777


Q ss_pred             eCCCC---------------------------------------------cEEEEEecCCceeEEEEeeCccEEE---eC
Q 017642          162 DDHQS---------------------------------------------RCIGELSFRSEVRSVKLRRDRIIVV---LE  193 (368)
Q Consensus       162 d~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~---~d  193 (368)
                      |+.+.                                             +.+..++-.+.|..++|+.|++.++   .+
T Consensus       286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT  365 (514)
T ss_pred             eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC
Confidence            76653                                             2333334456788999999998777   58


Q ss_pred             CcEEEEEcCCCeEEEEEeccCCCe--eEEEEecCCCeEEEEeecCCCCeEEEEecCc-------ceeeeeeccCcceEEE
Q 017642          194 QKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFIMAHDSRIACF  264 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~~~~~~~i~~v  264 (368)
                      |.|++||++...+++.+.. .+.+  +.++.+.++.  ++|+ |+..|.|.|++.+.       +++..+..-...|++|
T Consensus       366 GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~--ylA~-GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS--YLAT-GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             ceEEEEecCCcceEEEEee-cCccceeeeeecCCCc--eEEe-ccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            9999999999999988854 3333  4567778887  5675 99999999987543       5566666677789999


Q ss_pred             EECCCCCEEEEEeC--CCcEEEEEECCCCceeEeeEecc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          265 ALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       265 ~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +|++|+++||.++.  +.. +|+--+.+......+.... .-+.|+||+|||.|.+||.|.++|.+.+|.+.
T Consensus       442 ~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99999999988875  456 8888888777666655421 22479999999999999999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=7.9e-22  Score=174.13  Aligned_cols=241  Identities=15%  Similarity=0.125  Sum_probs=197.2

Q ss_pred             EEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        89 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      +-+.|+ ....||+|....|.+|+...+.......+   +...+.++.|++++..|+.|..+     |.|.|||..+.+.
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKK  251 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhccc
Confidence            346777 56688999888999999877665444343   37889999999999999999887     9999999999888


Q ss_pred             EEEEe--cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          169 IGELS--FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       169 ~~~~~--~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      +..+.  |...|-+++|+....... .|+.|..+|++..+.... +.+|...|..+.|++|+..  +|. |+.|+.+.||
T Consensus       252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lAS-GgnDN~~~Iw  328 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LAS-GGNDNVVFIW  328 (484)
T ss_pred             cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--ecc-CCCccceEec
Confidence            88876  789999999993332222 699999999988765544 7889999999999999985  554 8899999998


Q ss_pred             ec-CcceeeeeeccCcceEEEEECCCC-CEEEEEe--CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEE
Q 017642          245 HY-ASKRTKFIMAHDSRIACFALTQDG-QLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       245 ~~-~~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                      +. .......+..|.+.|.+++|+|.. .+||+|+  .|+. |++||..+++.+..+..   ...|.+|.|++..+-|++
T Consensus       329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~s  404 (484)
T KOG0305|consen  329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLS  404 (484)
T ss_pred             cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEE
Confidence            87 446777889999999999999954 4888875  4888 99999999999988874   568999999999876665


Q ss_pred             E--eCCCeEEEEEccCCCCCCCCCCCC
Q 017642          321 S--SDKGTVHVFNLKVNSGSARSEPRS  345 (368)
Q Consensus       321 ~--s~dg~i~iwd~~~~~~~~~~~~~~  345 (368)
                      +  ..++.|.||++.+.+......++.
T Consensus       405 thG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  405 THGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             ecCCCCCcEEEEeccccceeeeecCCc
Confidence            4  357789999999988777766653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=5.7e-24  Score=189.16  Aligned_cols=218  Identities=18%  Similarity=0.289  Sum_probs=185.9

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCC
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS  176 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~  176 (368)
                      +++... +..+++|+....  .       .|...+-++..-.....++.|+.|     ..+-+|.+..-..+..+. |..
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~--~-------~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hes   71 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF--V-------AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHES   71 (825)
T ss_pred             ccceeeeeeccccccchhh--h-------hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCC
Confidence            344443 455778885421  1       344455555555567778888887     888899988877777777 999


Q ss_pred             ceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceee
Q 017642          177 EVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTK  252 (368)
Q Consensus       177 ~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~  252 (368)
                      +|.++.|+.+..+++   .+|+|++||++.++.++++.+|...+..+.|+|-+.+  .+ +|+.|+.+++|+.. ..+..
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~--~a-~gStdtd~~iwD~Rk~Gc~~  148 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF--FA-SGSTDTDLKIWDIRKKGCSH  148 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE--ec-cccccccceehhhhccCcee
Confidence            999999999998888   6899999999999999999999999999999999975  34 59999999998877 68888


Q ss_pred             eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       253 ~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      .+.+|...+..+.|+|+|++++.+++|.. ++|||+..|+.+.+|..  |.+.+..+.|+|..-++++|+.|++|++||+
T Consensus       149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  149 TYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             eecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeecc
Confidence            89999999999999999999999999999 99999999999999998  8899999999999999999999999999999


Q ss_pred             cCCC
Q 017642          333 KVNS  336 (368)
Q Consensus       333 ~~~~  336 (368)
                      ++-+
T Consensus       226 etfe  229 (825)
T KOG0267|consen  226 ETFE  229 (825)
T ss_pred             ceeE
Confidence            9543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.1e-22  Score=179.07  Aligned_cols=244  Identities=11%  Similarity=0.173  Sum_probs=203.2

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~  156 (368)
                      ..-..|.+.|+.+....+|+.|++++ |.+|++|+......-+...+. .|...|.++++ ..+...+++|+-|     +
T Consensus        67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD-----~  140 (735)
T KOG0308|consen   67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLD-----R  140 (735)
T ss_pred             hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCC-----c
Confidence            34467999999999999998888888 888999998876544445665 89999999999 8889999999998     9


Q ss_pred             cEEEEeCCCCc--EEEEE----------ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEE
Q 017642          157 KVMIWDDHQSR--CIGEL----------SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (368)
Q Consensus       157 ~i~vwd~~~~~--~~~~~----------~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  221 (368)
                      .|.+||++++.  .+..+          .+...|++++-++.|..++   ..+.|++||.++++.+..+.+|...|.++.
T Consensus       141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll  220 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL  220 (735)
T ss_pred             cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence            99999999872  33222          2567899999999998888   477899999999999999999999999999


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEe
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRR  299 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~  299 (368)
                      ++.||..++   +++.||+|++|+... +++.++..|...|.++..+|+-.++++|+.||. |..=|+++. +....++ 
T Consensus       221 ~~dDGt~~l---s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n~~~~tlick-  295 (735)
T KOG0308|consen  221 VNDDGTRLL---SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRNPAKSTLICK-  295 (735)
T ss_pred             EcCCCCeEe---ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCCchhheEeec-
Confidence            999998743   477899999998876 677889999999999999999999999999999 999999984 3443344 


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                        ...+|..+..+.+.+-+-+++.|+.|+-|..+-.
T Consensus       296 --~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  296 --EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             --CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence              3557888888865555577788999999987643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-21  Score=154.33  Aligned_cols=204  Identities=15%  Similarity=0.183  Sum_probs=173.6

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~  202 (368)
                      +|...+..+.|+.++-++.+++.|     ....+|-..+|+.+.++. |.+.|+++..+-+.+.++   .|.++++||++
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            788899999999999999999998     999999988999999999 999999999999988888   69999999999


Q ss_pred             CCeEEEEEeccCCCeeEEEEecCCCeEEEEeec---CCCCeEEEEecC--------cceeeeeeccCcceEEEEECCCCC
Q 017642          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---LQKGQVRVEHYA--------SKRTKFIMAHDSRIACFALTQDGQ  271 (368)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g---~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~v~~sp~g~  271 (368)
                      +|+++..++ ...+|..+.|+.+|+..+ +++-   +..+.|.+++..        ..+...+..+...++.+-|.|-++
T Consensus        83 tGk~la~~k-~~~~Vk~~~F~~~gn~~l-~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   83 TGKQLATWK-TNSPVKRVDFSFGGNLIL-ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCcEEEEee-cCCeeEEEeeccCCcEEE-EEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            999999886 456889999999998644 3321   123456664433        234667778889999999999999


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +|++|.+||. |.+||+++|+.+.. ...  |...|++|++++|..++++++.|.+-++||+.+-+-.+.
T Consensus       161 ~ii~Ghe~G~-is~~da~~g~~~v~s~~~--h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt  227 (327)
T KOG0643|consen  161 TIIAGHEDGS-ISIYDARTGKELVDSDEE--HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT  227 (327)
T ss_pred             EEEEecCCCc-EEEEEcccCceeeechhh--hccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence            9999999999 99999999865543 344  777999999999999999999999999999988765443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.4e-22  Score=168.45  Aligned_cols=221  Identities=13%  Similarity=0.228  Sum_probs=181.8

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...-++.|.|++-+|+|.+|+.|+ .+.+++|.+.++....  .+. .|-..+.++.|+.++..+++++.|     |.|.
T Consensus        77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--v~~-aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~  148 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--VLS-AHYQSITCLKFSDDGSHIITGSKD-----GAVL  148 (476)
T ss_pred             hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--HHH-hhccceeEEEEeCCCcEEEecCCC-----ccEE
Confidence            344567899999999999999997 7779999999888763  343 899999999999999999999999     9999


Q ss_pred             EEeCC---------CCcEEEEEe-cCCceeEEEEeeCc---cEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642          160 IWDDH---------QSRCIGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       160 vwd~~---------~~~~~~~~~-~~~~v~~~~~~~~~---~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  224 (368)
                      +|++.         +-++++.+. |.-.|+++...+.|   +++.  .|.++++||+..|..+.++. ....+.++++.|
T Consensus       149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp  227 (476)
T KOG0646|consen  149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP  227 (476)
T ss_pred             EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc
Confidence            99753         235677777 89999999988753   3332  69999999999999888875 566889999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecC-----------------cceeeeeeccCc--ceEEEEECCCCCEEEEEeCCCcEEEE
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYA-----------------SKRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRI  285 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~-----------------~~~~~~~~~~~~--~i~~v~~sp~g~~l~s~~~dg~~i~i  285 (368)
                      .+..+++   |..+|.|.+.+..                 +..+..+.+|.+  .|+|++++-||.+|++|+.||. |+|
T Consensus       228 ae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-Vcv  303 (476)
T KOG0646|consen  228 AERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCV  303 (476)
T ss_pred             cccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEE
Confidence            9986443   7889999883321                 123455678888  9999999999999999999999 999


Q ss_pred             EECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642          286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      ||+.+.++++++..  ..++|+.+.+.|-.+
T Consensus       304 Wdi~S~Q~iRtl~~--~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  304 WDIYSKQCIRTLQT--SKGPVTNLQINPLER  332 (476)
T ss_pred             EecchHHHHHHHhh--hccccceeEeecccc
Confidence            99999999988874  467899999866433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=158.65  Aligned_cols=242  Identities=14%  Similarity=0.158  Sum_probs=177.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC------------cceEEEcccCCceeEEEEEEe-------CCeEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFR-------CNILAL  144 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  144 (368)
                      .+-...+.|+|||..|++-+ |+.+++|++....            ......+  .....+...+|-       |+..++
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCcccee
Confidence            34556789999999998888 9999999984211            1111112  234445555553       566777


Q ss_pred             EecCCCCCCCCCcEEEEeCCCCcEEEEEe---cCC---ceeEEEEeeCccEEE--eCCcEEEEEc-CCCeEEEE---E--
Q 017642          145 VGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRS---EVRSVKLRRDRIIVV--LEQKIFVYNF-ADLKLLHQ---I--  210 (368)
Q Consensus       145 ~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~--~d~~i~vwd~-~~~~~~~~---~--  210 (368)
                      ++.+++     .-|++||.-+|+....+.   |..   ...+++|+|||..++  ....|++||+ +.|+....   +  
T Consensus       127 a~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  127 AVSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             eecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence            777777     899999999999888775   433   456899999999888  6789999999 66643221   1  


Q ss_pred             --eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe-cCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          211 --ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       211 --~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                        .+..+-+.+++|+|.... .+++ |+....+-|+. ...+++..+.+|.+.|+.+.|+++|+.|++|+.....|..||
T Consensus       202 ~k~gq~giisc~a~sP~~~~-~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSK-TLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             ccccccceeeeeeccCCCCc-ceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence              123456788999998765 3455 77788888843 445677788899999999999999999999987443399999


Q ss_pred             CCC-CceeEeeEeccCcc-cEEEEEE--ecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          288 TLD-GTLLQEVRRGADRA-EIYSLAF--SSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       288 ~~~-~~~~~~~~~~~~~~-~v~~l~~--sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ++. ..++..+.+  |.+ .-..|-|  .|++++|++|+.||.|++||+++...
T Consensus       280 iR~~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  280 IRYSRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             ehhccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            985 566777776  333 3344544  58999999999999999999998544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.8e-20  Score=162.33  Aligned_cols=237  Identities=15%  Similarity=0.169  Sum_probs=170.5

Q ss_pred             CEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~  163 (368)
                      .+.+++|+|+|+.+ +++. ++.|++||..+++..  ..+. .+ .....+.+++++..+ +++..+     +.|++||+
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~  102 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP-SG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI  102 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc-CC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence            46789999999976 4555 677999998876543  3332 22 223456777776544 455555     89999999


Q ss_pred             CCCcEEEEEecCCceeEEEEeeCccEEE---eC-CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (368)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg  239 (368)
                      .+++.+..+.+...+.+++|+|++.+++   .+ ..+++||.++++....+.. ......++|+++++.+++  ++..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~--~~~~~~  179 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV--SSEIGG  179 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE--EcCCCC
Confidence            9988888887666688999999999887   23 3578889988877665533 234567899999986443  355689


Q ss_pred             eEEEEecCcce-eeeeeccC-------cceEEEEECCCCCEEEEE-eCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          240 QVRVEHYASKR-TKFIMAHD-------SRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       240 ~i~i~~~~~~~-~~~~~~~~-------~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      .|++|+..... +..+..+.       .....++|+|++++++++ +.++. |.+||+.+++.+..+..   ...+.+++
T Consensus       180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~---~~~~~~~~  255 (300)
T TIGR03866       180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLV---GQRVWQLA  255 (300)
T ss_pred             EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEe---CCCcceEE
Confidence            99998876543 33333211       123568899999975543 45667 99999999888766542   34789999


Q ss_pred             EecCCCEEEEE-eCCCeEEEEEccCCCCCC
Q 017642          311 FSSNAQWLAVS-SDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       311 ~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~  339 (368)
                      |+|+|++|+++ +.+|.|++||+++++...
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            99999999876 468999999999877643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=166.77  Aligned_cols=235  Identities=12%  Similarity=0.120  Sum_probs=190.1

Q ss_pred             CEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-c
Q 017642           98 GCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (368)
Q Consensus        98 ~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~  174 (368)
                      .+++++.  ...+.+|.+........+.   --+..+.++.-++.+.+++.+.-.     +.|++|.+.+|..+..+. |
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aH  122 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYI---VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAH  122 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhc---ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhh
Confidence            5777777  3349999987654443111   345668889999999999988655     999999999999998888 9


Q ss_pred             CCceeEEEEeeCccEEE---eCCcEEEEEcC---------CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          175 RSEVRSVKLRRDRIIVV---LEQKIFVYNFA---------DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~---~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                      -..|+++.|+.|+.+++   .||.|.+|++.         +-+.++.+..|.-+|+.+...+.|..-.+.+ .+.|.+++
T Consensus       123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k  201 (476)
T KOG0646|consen  123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIK  201 (476)
T ss_pred             ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEE
Confidence            99999999999999999   59999999873         2356788888999999998888765544554 77999999


Q ss_pred             EEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----------------ceeEeeEeccCcccE
Q 017642          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------------TLLQEVRRGADRAEI  306 (368)
Q Consensus       243 i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----------------~~~~~~~~~~~~~~v  306 (368)
                      +|+.....+..-......+.+++.+|-++.++.|+.+|. |.+.++...                ..+..+.++.....|
T Consensus       202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI  280 (476)
T ss_pred             EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence            999988776655566778999999999999999999999 888877432                344556663333499


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      +|++++-||.+|++|+.||.++|||+...+-+....
T Consensus       281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999999999999999999999999887766555

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.1e-22  Score=179.50  Aligned_cols=240  Identities=13%  Similarity=0.215  Sum_probs=182.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceE--EEcc--cCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEE
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFE--RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .....+|..+++-..++.++...++||.++.......  ..+.  ..-...+.++.|.. ...++++++..     |.|.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i~  113 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVIS  113 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcEE
Confidence            4467778888998889888888899998875443222  1111  01122333445542 23445666655     9999


Q ss_pred             EEeCCC---CcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          160 IWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       160 vwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +||+..   .+.+..|. |...+.++.|++-.-.++    .||.|++||++..+-..++.+....|..+.|+|.....+ 
T Consensus       114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F-  192 (839)
T KOG0269|consen  114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF-  192 (839)
T ss_pred             EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE-
Confidence            999987   45556676 999999999999765544    599999999999888888888888999999999876543 


Q ss_pred             EeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce--eEeeEeccCcccEE
Q 017642          232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIY  307 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~  307 (368)
                      + ++...|.+++|+...  +....+.+|.++|.|+.|+|++.+||+|+.|+. |+|||+.+.+.  +.++.   ...+|.
T Consensus       193 ~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~  267 (839)
T KOG0269|consen  193 A-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVG  267 (839)
T ss_pred             E-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceee
Confidence            3 367899999999876  556678899999999999999999999999999 99999986543  33444   356899


Q ss_pred             EEEEecCCCE-EEEEe--CCCeEEEEEccCC
Q 017642          308 SLAFSSNAQW-LAVSS--DKGTVHVFNLKVN  335 (368)
Q Consensus       308 ~l~~sp~~~~-l~s~s--~dg~i~iwd~~~~  335 (368)
                      +|.|-|+..+ |++++  .|-.|+|||++.+
T Consensus       268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eeeeccCccchhhhhhccccceEEEEeeccc
Confidence            9999998764 56654  5778999999764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=7e-22  Score=169.74  Aligned_cols=206  Identities=17%  Similarity=0.228  Sum_probs=157.5

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe--cCCceeEEEEeeCccEEE---e
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS--FRSEVRSVKLRRDRIIVV---L  192 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~---~  192 (368)
                      ..+. +|...|.++.+++.+..+++|+.|     ..|++||+...    +..+.+.  ....|.++.|++.|..++   .
T Consensus       161 i~l~-hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  161 IQLK-HGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             Eecc-CCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            4454 677788999999999999999998     99999998643    2233343  567899999999876655   4


Q ss_pred             CCcEEEEEcCCCeEEEEE------------eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce--eeeee---
Q 017642          193 EQKIFVYNFADLKLLHQI------------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIM---  255 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~--~~~~~---  255 (368)
                      ...++|+|-...+.....            ++|...+++.+|+|+.+..+|.|  +.||+++||+.....  ...++   
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeecc
Confidence            668999995433322222            35777889999999999877754  689999999877622  22222   


Q ss_pred             --ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc--eeEeeEeccCcc--cEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       256 --~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                        +..-+++.++|++||++||+|+.||. |.+|+..+..  ....++. .|..  .|++|.||+||++|++-+.|+++++
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccCCCceee
Confidence              33457899999999999999999999 9999975432  2222332 2554  8999999999999999999999999


Q ss_pred             EEccCCCC
Q 017642          330 FNLKVNSG  337 (368)
Q Consensus       330 wd~~~~~~  337 (368)
                      ||++..++
T Consensus       391 WDLrq~kk  398 (641)
T KOG0772|consen  391 WDLRQFKK  398 (641)
T ss_pred             eecccccc
Confidence            99987654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=4.4e-23  Score=183.58  Aligned_cols=231  Identities=13%  Similarity=0.216  Sum_probs=201.1

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|...|.|+..-..++.+++|+ |..+-+|.+.......  .+. +|...|-++.|+.....++.+..+     |+|+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--S~~-~hespIeSl~f~~~E~Llaagsas-----gtiK   95 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--SLT-GHESPIESLTFDTSERLLAAGSAS-----GTIK   95 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--eee-ccCCcceeeecCcchhhhcccccC-----Ccee
Confidence            346788888988877888999998 6668899987655553  354 899999999999999999999888     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      +||++.++.++++. |...+..+.|+|-+.+.+   .|..+++||++...|.+.+.+|...+.++.|+|+|.+  ++ .|
T Consensus        96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~--v~-~g  172 (825)
T KOG0267|consen   96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW--VA-SG  172 (825)
T ss_pred             eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCce--ee-cc
Confidence            99999999999988 999999999999999997   6999999999988899999999999999999999984  44 47


Q ss_pred             CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      +.|..++||+... +....+..|.+.+..+.|+|..-++++|+.|++ |++||+++.+.+.....  ....|.++.|+|+
T Consensus       173 ~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPD  249 (825)
T ss_pred             CCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCC
Confidence            7899999988755 566678999999999999999999999999999 99999999888877665  4678999999999


Q ss_pred             CCEEEEEeCCC
Q 017642          315 AQWLAVSSDKG  325 (368)
Q Consensus       315 ~~~l~s~s~dg  325 (368)
                      ++.+++|....
T Consensus       250 ~~~~~~G~q~s  260 (825)
T KOG0267|consen  250 GKIVLSGEQIS  260 (825)
T ss_pred             ceeeecCchhh
Confidence            99998886543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-20  Score=152.93  Aligned_cols=237  Identities=14%  Similarity=0.214  Sum_probs=184.2

Q ss_pred             EEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           88 LLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      ..|+.|++-|.+||+|. +|.|.|||+.+....  +.+. +|-..+.+++|++++..+++++.|     ..|.+||+..|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCC
Confidence            78999999999999999 888999999987754  4565 888999999999999999999998     99999999999


Q ss_pred             cEEEEEecCCceeEEEEeeC-----------------------------------------------ccEEE---eCCcE
Q 017642          167 RCIGELSFRSEVRSVKLRRD-----------------------------------------------RIIVV---LEQKI  196 (368)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~-----------------------------------------------~~~l~---~d~~i  196 (368)
                      .+++.+....+|+.+.|+|.                                               |+++.   ..|.+
T Consensus        98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl  177 (405)
T KOG1273|consen   98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL  177 (405)
T ss_pred             CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence            99888877777776666653                                               23333   35678


Q ss_pred             EEEEcCCCeEEEEEeccC-CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------cee---eeee--ccCcceEE
Q 017642          197 FVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRT---KFIM--AHDSRIAC  263 (368)
Q Consensus       197 ~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~---~~~~--~~~~~i~~  263 (368)
                      .++|.++.+++..++... ..|..+.++..|+.+++   .+.|..||.++...       ..+   ..+.  .....-.+
T Consensus       178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii---NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII---NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             EEEecchheeeeeeeechheeeeEEEEeccCcEEEE---ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            888888888887776555 67788899999986544   44799999965441       011   1111  11223467


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       264 v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ++|+.+|.|++.++.....++||....|.+++.+.+. ......++.|+|-...+++. ..|.++||.......
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCCcceeeeecCC-chhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence            8999999999988866555999999999999988873 23578899999988888877 788999999866543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=2.9e-21  Score=171.96  Aligned_cols=237  Identities=16%  Similarity=0.232  Sum_probs=186.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC---CeEEEEecCCCCCCCCCcE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d~~~~~~~i  158 (368)
                      .....+.+++.+|+|++||+|+ -+.++||++...+....  ++ .|...+.++.|+.   ...+++++++|     .-|
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~--~e-AHesEilcLeyS~p~~~~kLLASasrd-----RlI  528 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF--ME-AHESEILCLEYSFPVLTNKLLASASRD-----RLI  528 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhh--ee-cccceeEEEeecCchhhhHhhhhccCC-----ceE
Confidence            3456899999999999999999 55699999987666533  43 8999999999875   35678999998     999


Q ss_pred             EEEeCCCC-cEEEEEe-cCCceeEEEEeeCc--cEEE---eCCcEEEEEcCC----CeEEE--EEeccCCCeeEEEEecC
Q 017642          159 MIWDDHQS-RCIGELS-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFAD----LKLLH--QIETIANPKGLCAVSQG  225 (368)
Q Consensus       159 ~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~--~~l~---~d~~i~vwd~~~----~~~~~--~~~~~~~~v~~~~~~~~  225 (368)
                      .|||+... ..++++. |...|+++.|..+|  ..++   .|+.|. |+...    |....  +-......+..+++.|.
T Consensus       529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCC
Confidence            99998755 5667777 89999999999877  3344   455554 33322    22111  00112345677888888


Q ss_pred             CCeEEEEeecCCCCeEEEEe-cCcceeeeeec---cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          226 VGSLVLVCPGLQKGQVRVEH-YASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      .+..+.   ++.|..|+|++ ..++..+.+++   |++..-.+...|.|.|||+.+.|.+ +.++|..+|+++..+.+  
T Consensus       608 ~k~v~t---~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--  681 (1080)
T KOG1408|consen  608 SKLVVT---VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--  681 (1080)
T ss_pred             cceEEE---EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--
Confidence            875443   55899999955 45566777764   6777888999999999999999999 99999999999999998  


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      |...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cchheeeeeecccchhheeecCCceEEEEECch
Confidence            888999999999999999999999999999854

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.4e-20  Score=162.56  Aligned_cols=241  Identities=13%  Similarity=0.197  Sum_probs=192.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .-+..|.+++|+.+.+.||++. ++.|.||++... -.....+..+....+-.++|.+++..+.++..      |.|..|
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~Ew   95 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITEW   95 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEEE
Confidence            4467899999999999999998 888999999763 33334443345566778888876666666554      999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEE--EEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH--QIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      |+.+++....+. ..+.|++++.+|.+..++   .||.++.++...++...  .+....+.+-++.|++++..  ++ +|
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~-~G  172 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IA-GG  172 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EE-ec
Confidence            999999999998 889999999999888777   58888888887776543  33334578889999999875  44 48


Q ss_pred             CCCCeEEEEecCcceeee-----e---ec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          236 LQKGQVRVEHYASKRTKF-----I---MA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~-----~---~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      +.||.|++|+........     +   .. ...-|.++.|-.++ .|++|...|+ |++||-..+..++.+..  |.+.|
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adV  248 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADV  248 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhcce
Confidence            999999999876533222     1   11 23357788887665 6899999999 99999999999999988  88999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+++..+++.++++++.|+.|.-|...+.+.
T Consensus       249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             eEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            9999999999999999999999999887765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.6e-21  Score=160.97  Aligned_cols=242  Identities=17%  Similarity=0.213  Sum_probs=176.9

Q ss_pred             EEEEEcC-------CCCEEEEEe-CCeEEEEEecCCCcceE-EEcc-----------------cCCceeEEEEEEeCC-e
Q 017642           89 LHISFNQ-------DHGCFAAGT-DHGFRIYNCDPFREIFR-RDFE-----------------RGGGIGVVEMLFRCN-I  141 (368)
Q Consensus        89 ~~~~~s~-------~g~~l~~~~-d~~i~iw~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~-~  141 (368)
                      .|++|..       .|+++|.|+ |..|.|||++-.....- ..+.                 .+|...+..++|+.. .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5667743       367999999 88999999863322110 0010                 146666777888764 4


Q ss_pred             EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCC
Q 017642          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANP  216 (368)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~  216 (368)
                      .+|++++.|     .+|++||+.++++...+. |.+.|.++.|++..- +++   .|++|.+.|.+........-...+.
T Consensus       257 nVLaSgsaD-----~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~  331 (463)
T KOG0270|consen  257 NVLASGSAD-----KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE  331 (463)
T ss_pred             eeEEecCCC-----ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence            578889988     999999999999999999 999999999999654 444   6999999999853222222224567


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEe-cCc-ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCce
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~-~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                      |-.++|.+.....+++  +..||+++-.+ +.. +++.++++|.++|.+|+++..-. +|++++.|+. |++|++.....
T Consensus       332 VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~  408 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSP  408 (463)
T ss_pred             eEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCC
Confidence            8889999998875554  57899999844 333 78889999999999999987654 7999999999 99999875443


Q ss_pred             eEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642          294 LQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .........-+...|+++.|+-. +|+.|+..+.++|||+.+....
T Consensus       409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            22211111123467777888765 5677788888999999887654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.7e-20  Score=150.82  Aligned_cols=206  Identities=16%  Similarity=0.248  Sum_probs=159.6

Q ss_pred             CCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCc----------EEEEE------ecCCceeEEEEeeC--c
Q 017642          127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSR----------CIGEL------SFRSEVRSVKLRRD--R  187 (368)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~----------~~~~~------~~~~~v~~~~~~~~--~  187 (368)
                      .|...|..+...+ .+.++++|+.|     |.|.+||++...          .+..+      .|+..|..+.|-|-  |
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            3444555555543 56778888887     999999987532          11111      16778999999993  4


Q ss_pred             cEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC-eEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEE
Q 017642          188 IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIAC  263 (368)
Q Consensus       188 ~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~  263 (368)
                      .+..  .|.+++|||..+.+....|+ ..+.|..-+++|-.. +.++| .|..+-+|++ +...+.....+.+|.+.|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            4443  59999999999998887775 466788888988765 44555 4889999999 77778888899999999999


Q ss_pred             EEECCCCC-EEEEEeCCCcEEEEEECCCC-ceeEeeE------------eccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          264 FALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEVR------------RGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       264 v~~sp~g~-~l~s~~~dg~~i~iwd~~~~-~~~~~~~------------~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                      +.|+|... .|++|+.||. |++||++.. .+...+.            ...|.+.|..++|+.|+.++++++.|..+++
T Consensus       194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            99999877 6889999999 999999864 2333322            2236788999999999999999999999999


Q ss_pred             EEccCCCCCCC
Q 017642          330 FNLKVNSGSAR  340 (368)
Q Consensus       330 wd~~~~~~~~~  340 (368)
                      |+..+|+....
T Consensus       273 wn~~~G~ntl~  283 (397)
T KOG4283|consen  273 WNMESGRNTLR  283 (397)
T ss_pred             eecccCccccc
Confidence            99999876543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=155.79  Aligned_cols=189  Identities=15%  Similarity=0.198  Sum_probs=150.5

Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEeCCC----------------CcEEEEEe-cCCceeEEEEee--CccEEEe--CCcEE
Q 017642          139 CNILALVGGGPDPQYPLNKVMIWDDHQ----------------SRCIGELS-FRSEVRSVKLRR--DRIIVVL--EQKIF  197 (368)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~vwd~~~----------------~~~~~~~~-~~~~v~~~~~~~--~~~~l~~--d~~i~  197 (368)
                      ++..+.++-+..     |.|+|||+..                .+++.++. |.+.-++++|+|  .|.++..  -+.|+
T Consensus       163 ~~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~  237 (440)
T KOG0302|consen  163 GNEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIH  237 (440)
T ss_pred             CCcceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceE
Confidence            355666666665     9999999753                24566676 888899999999  4555553  46899


Q ss_pred             EEEcCCCeE---EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCCCC
Q 017642          198 VYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQ  271 (368)
Q Consensus       198 vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~g~  271 (368)
                      +|...+|.-   ...+.+|...|..++|+|..+.++ + +++.||.|+||+.+..   .....++|.+.|+.|.|+.+-.
T Consensus       238 lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf-a-ScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~  315 (440)
T KOG0302|consen  238 LWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF-A-SCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP  315 (440)
T ss_pred             eeeeccCceeecCccccccccchhhhccCCccCceE-E-eeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc
Confidence            999987642   233456888999999999988744 3 4678999999998775   3334588999999999998888


Q ss_pred             EEEEEeCCCcEEEEEECCC---CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642          272 LLATSSTKGTLVRIFNTLD---GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~---~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +||+|+.||+ ++|||++.   ++++..|+.  |..+|++|.|+|.. ..|++++.|..|.|||+.....
T Consensus       316 lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  316 LLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            9999999999 99999985   578888988  88999999999854 5778888999999999976544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.1e-21  Score=174.21  Aligned_cols=237  Identities=14%  Similarity=0.152  Sum_probs=179.9

Q ss_pred             CEEEEEEcC-CCCEEEEEe-CCeEEEEEecCC-CcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEe
Q 017642           87 TLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        87 ~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      .+..|.|+. +.++||+++ .+.|.+||+... .......|. .|...+..+.|+. .-.++++|+.|     |.|++||
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQD-----g~vK~~D  162 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQD-----GTVKCWD  162 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCC-----ceEEEEe
Confidence            345678874 467899999 666999999862 222223454 7888899999976 45677899998     9999999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      ++..+...++. ..+.|++|.|+|. +..++   ..|.+.+||++.. ++...+..|.++|.++.|+|++.  +||+ |+
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lAT-GG  239 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLAT-GG  239 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeee-cC
Confidence            99988888877 7789999999994 34444   5789999999764 56677889999999999999665  5665 78


Q ss_pred             CCCeEEEEecCcceeeee--eccCcceEEEEECCCCC-EEEEEeC--CCcEEEEEECCCCce-eEeeEeccCcccEEEEE
Q 017642          237 QKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQ-LLATSST--KGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLA  310 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~--~~~~~~i~~v~~sp~g~-~l~s~~~--dg~~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~  310 (368)
                      .|++|+||+.+......+  .....++.+|+|-|+.. +||+++.  |-. |+|||++..-. ...+..  |...++.++
T Consensus       240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRPYIP~~t~~e--H~~~vt~i~  316 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRPYIPYATFLE--HTDSVTGIA  316 (839)
T ss_pred             CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccccccceeeec--cCcccccee
Confidence            999999999886433322  12356899999999876 5776654  456 99999987543 445555  778899999


Q ss_pred             Eec-CCCEEEEEeCCCeEEEEEccCC
Q 017642          311 FSS-NAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       311 ~sp-~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |.. |...|.+++.||+|..-.+++.
T Consensus       317 W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  317 WDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ccCCCceeeEeecCccHHHHhhhhcc
Confidence            965 4567889999998876655544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.6e-21  Score=150.12  Aligned_cols=198  Identities=16%  Similarity=0.226  Sum_probs=157.9

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC---cEEEEEe-cCCceeEEEEee--CccEEE---eCCcEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIF  197 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~-~~~~v~~~~~~~--~~~~l~---~d~~i~  197 (368)
                      .|...+.+...+--+..+++++.|     +.|+|+.++.+   +.+.++. |.++|+.++|..  -|.+|+   .||+|.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            444445444444456677888877     99999998755   4567777 999999999976  688888   699999


Q ss_pred             EEEcCCCe--EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEECCC--
Q 017642          198 VYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQD--  269 (368)
Q Consensus       198 vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~--  269 (368)
                      ||.-++++  .......|...+++++|.|.+-.+.|+| ++.||.|.|...+.    ...+....|.-.|++++|.|-  
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            99988774  2344567889999999999999999998 78899999943332    233456789999999999985  


Q ss_pred             -C-----------CEEEEEeCCCcEEEEEECCCCce--eEeeEeccCcccEEEEEEecCC----CEEEEEeCCCeEEEEE
Q 017642          270 -G-----------QLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVHVFN  331 (368)
Q Consensus       270 -g-----------~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~dg~i~iwd  331 (368)
                       |           +.|++|+.|.. |+||+..+++-  -..|.+  |...|+.++|.|.-    .+|++++.||++.||.
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence             4           57999999999 99999887643  233555  88999999999964    4799999999999998


Q ss_pred             cc
Q 017642          332 LK  333 (368)
Q Consensus       332 ~~  333 (368)
                      .+
T Consensus       240 ~~  241 (299)
T KOG1332|consen  240 KD  241 (299)
T ss_pred             ec
Confidence            76

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=4.6e-20  Score=161.35  Aligned_cols=262  Identities=16%  Similarity=0.208  Sum_probs=195.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEE
Q 017642           57 SFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEM  135 (368)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  135 (368)
                      +.-|.+|.|....  +.+....-...+|++.|.+|...|.|.+|++|+ |++|+||.+.++.++....+.    ..|.++
T Consensus       374 ~LiPkLPsp~dLr--PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d----~~I~~v  447 (733)
T KOG0650|consen  374 SLIPKLPSPKDLR--PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD----SEIRSV  447 (733)
T ss_pred             HhcccCCChhhcC--CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec----ceeEEE
Confidence            3444444444433  333445567889999999999999999999999 777999999999988665552    356666


Q ss_pred             EEeCC--eEEEEecCCC---------------------------CCCCCCcEEEEeCCCC-----cEEEEEecCCceeEE
Q 017642          136 LFRCN--ILALVGGGPD---------------------------PQYPLNKVMIWDDHQS-----RCIGELSFRSEVRSV  181 (368)
Q Consensus       136 ~~~~~--~~~~~s~~~d---------------------------~~~~~~~i~vwd~~~~-----~~~~~~~~~~~v~~~  181 (368)
                      +|++.  ..+++.+...                           ..+.++.+..|.-...     .....+.|...|..+
T Consensus       448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v  527 (733)
T KOG0650|consen  448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV  527 (733)
T ss_pred             EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence            66653  2222222211                           0123455667753311     122345699999999


Q ss_pred             EEeeCccEEE------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeee
Q 017642          182 KLRRDRIIVV------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI  254 (368)
Q Consensus       182 ~~~~~~~~l~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~  254 (368)
                      .|+..|.+++      ....|.|+++...+...-|....+.+.++.|+|....+++++    ...|+|++... ..++.+
T Consensus       528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL  603 (733)
T KOG0650|consen  528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKL  603 (733)
T ss_pred             eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHH
Confidence            9999999998      246899999987766666666677899999999998877665    57899966544 555566


Q ss_pred             eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       255 ~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ......|..++++|.|.-|+.|+.|+. +..||+.-. ++.+.++.  |...+++|+|++.-.++++|+.||++.||.
T Consensus       604 ~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  604 LTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             hcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            666778999999999999999999999 999999754 55666666  788999999999999999999999999885

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=9e-20  Score=151.20  Aligned_cols=239  Identities=10%  Similarity=0.131  Sum_probs=169.0

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe--CCe-EEEEEecCCCc--------------ceEEEcccCCceeEEEEEEeCCeE-
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT--DHG-FRIYNCDPFRE--------------IFRRDFERGGGIGVVEMLFRCNIL-  142 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~--d~~-i~iw~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-  142 (368)
                      .-.|.+.++.+.-++-|+-.++++  +.+ |+||++...-.              .....+. +|...-+.+.|+|-.. 
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeeccccccc
Confidence            346777888888877765444443  555 99999843211              1112333 6777788888888322 


Q ss_pred             EEEecCCCCCCCCCcEEEEeCCCCcEEEE---Ee-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCC---eEEEEEe
Q 017642          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGE---LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL---KLLHQIE  211 (368)
Q Consensus       143 ~~~s~~~d~~~~~~~i~vwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~---~~~~~~~  211 (368)
                      .+++|.--     +.|++|...+|.....   +. |...|..++|+|...-++    .||.|+|||++.+   .++.+ +
T Consensus       226 ~LlsGDc~-----~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k  299 (440)
T KOG0302|consen  226 RLLSGDCV-----KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K  299 (440)
T ss_pred             ccccCccc-----cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence            24444433     7899999888754322   22 999999999999765444    5999999999988   33333 7


Q ss_pred             ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEE
Q 017642          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIF  286 (368)
Q Consensus       212 ~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iw  286 (368)
                      .|...|+.+.|+..-.  +||+ |+.||+++||+.+.    .++..++-|..+|++|.|+|.. ..|++++.|.. |.||
T Consensus       300 Ah~sDVNVISWnr~~~--lLas-G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiW  375 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREP--LLAS-GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIW  375 (440)
T ss_pred             ccCCceeeEEccCCcc--eeee-cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEE
Confidence            8899999999987765  5564 89999999998765    5667899999999999999954 47888888988 9999


Q ss_pred             ECCCCc----------------eeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEE
Q 017642          287 NTLDGT----------------LLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFN  331 (368)
Q Consensus       287 d~~~~~----------------~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd  331 (368)
                      |+....                +.+-+..|.....+..|.|++.- .+|++.+.|| +.||.
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            985321                11112222224478889999854 4778888888 66664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=9.2e-20  Score=165.05  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=136.5

Q ss_pred             CceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE---eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc
Q 017642          176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~  249 (368)
                      ..+++++.++.|.+.+   +.|.|-+|++++|.....+   ..|..+|..++...-++  .+++ ++.+|.+.+|+...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vs-a~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVS-AGADGILKFWDFKKK  525 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEE-ccCcceEEEEecCCc
Confidence            5688899999998887   5899999999999888888   47889999888765554  3444 568999999999887


Q ss_pred             eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       250 ~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                      .+..--.-...+.++..+.....++.+..|-. |+++|+.+.+.+++|.+  |...|++++|||||++|++++.|++|++
T Consensus       526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~  602 (910)
T KOG1539|consen  526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRT  602 (910)
T ss_pred             ceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEE
Confidence            75443344567888888888889999999988 99999999999999998  8899999999999999999999999999


Q ss_pred             EEccCCCCCCCC
Q 017642          330 FNLKVNSGSARS  341 (368)
Q Consensus       330 wd~~~~~~~~~~  341 (368)
                      ||+-++..+...
T Consensus       603 wDlpt~~lID~~  614 (910)
T KOG1539|consen  603 WDLPTGTLIDGL  614 (910)
T ss_pred             EeccCcceeeeE
Confidence            999999887643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=4.8e-20  Score=157.91  Aligned_cols=236  Identities=15%  Similarity=0.165  Sum_probs=182.4

Q ss_pred             CEEEEEEcCCCCEEEEEe---CCeEEEEEecCCC--cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+.++.|+.... |++++   |..+++|.-....  ........ +.  ...|+.......++++++..     +.|+||
T Consensus        36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd--~~~Cv~~~s~S~y~~sgG~~-----~~Vkiw  106 (673)
T KOG4378|consen   36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GD--NAFCVACASQSLYEISGGQS-----GCVKIW  106 (673)
T ss_pred             cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccc-cc--hHHHHhhhhcceeeeccCcC-----ceeeeh
Confidence            589999988765 44433   6669999754321  12222221 22  33334444445888888887     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCC-CeeEEEEecCCCeEEEEeecC
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      |++...+.+.++ |...|+++.++-...+++   ..|.|.|..+.++.....|....+ .+..+.|++..+.++.  +.+
T Consensus       107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~--~as  184 (673)
T KOG4378|consen  107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS--IAS  184 (673)
T ss_pred             hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE--eec
Confidence            999777777777 999999999999888888   478999999999988888865534 4557899998886443  356


Q ss_pred             CCCeEEEEecCccee--eeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          237 QKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~--~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      .+|.|.+|+.++...  ...+.|..+...|+|+|... +|++.+.|.. |.+||+...+....+..   ..+...++|++
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~y---~~Plstvaf~~  260 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLTY---SHPLSTVAFSE  260 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceeee---cCCcceeeecC
Confidence            899999999988543  33578999999999999654 8899999999 99999998877777663   55899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCC
Q 017642          314 NAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +|.+|+.|...|.|..||++..+.
T Consensus       261 ~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  261 CGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             CceEEEeecCCceEEEEecccCCC
Confidence            999999999999999999986543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=5e-20  Score=149.60  Aligned_cols=246  Identities=15%  Similarity=0.167  Sum_probs=193.3

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEe------cC--------CCcc-----------------------
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNC------DP--------FREI-----------------------  119 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~------~~--------~~~~-----------------------  119 (368)
                      .....+|.+.|++++|++.+.++++++ |.+..||..      ..        .+..                       
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            456789999999999999999999999 888999972      11        0000                       


Q ss_pred             -eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCC
Q 017642          120 -FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQ  194 (368)
Q Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~  194 (368)
                       ....+ .+|...+.+..|-..+..+++++.|     .+-.+||+++++.+..+. |....+.++-+|..++++   .|.
T Consensus       263 vPl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWD-----RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt  336 (481)
T KOG0300|consen  263 VPLMRL-TGHRAVVSACDWLAGGQQMVTASWD-----RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT  336 (481)
T ss_pred             eeeeee-eccccceEehhhhcCcceeeeeecc-----ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCc
Confidence             00112 2566667777777788888888888     999999999999999998 999999999999999888   588


Q ss_pred             cEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC
Q 017642          195 KIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ  271 (368)
Q Consensus       195 ~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~  271 (368)
                      +.++||++.. ..+..|++|...|+++.|..+.+   ++ +|+.|.+|++|+...  ..+.++. ...+++.++.+..+.
T Consensus       337 TFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---vV-SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~  411 (481)
T KOG0300|consen  337 TFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---VV-SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP  411 (481)
T ss_pred             eeEeccchhhcceeeeecccccceeEEEEecCCc---ee-ecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence            9999999743 45678899999999999998886   44 489999999988765  2333443 356789999998888


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEe---ccCcccEEEEEEecCC--CEEEEEeCCCeEEEEEccCCC
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAEIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~--~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +|+.--.+.. |++||+. |..+..+..   ..|..-|.|++|..+.  .-|++++.|+.+.=|++..+.
T Consensus       412 iIAiPhDNRq-vRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  412 IIAIPHDNRQ-VRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eEEeccCCce-EEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            8888888888 9999985 444444431   1267789999998654  357899999999999998765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.85  E-value=1.7e-18  Score=151.05  Aligned_cols=227  Identities=15%  Similarity=0.133  Sum_probs=156.8

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  175 (368)
                      .++++++ |+.+++||+.+++..  ..+. .+ ..+..+.+++++..+ +++..+     +.|++||..+++....+...
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~--~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVT--RTFP-VG-QRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceE--EEEE-CC-CCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCC
Confidence            4667777 888999998876644  3343 22 234567888877544 555555     89999999999888777644


Q ss_pred             CceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC-eEEEEecCcce
Q 017642          176 SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKR  250 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~  250 (368)
                      ..+..+++++++..++    .++.|++||+++++.+..+.. ...+..++|+|+++.+++   +..++ .+.+|+.....
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~---~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVN---TSETTNMAHFIDTKTYE  148 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEE---EecCCCeEEEEeCCCCe
Confidence            5567889999988665    378999999998887777753 234577999999986433   22343 45556655433


Q ss_pred             eeeeeccCcceEEEEECCCCCEEEEE-eCCCcEEEEEECCCCceeEeeEecc---C--cccEEEEEEecCCCEEEEE-eC
Q 017642          251 TKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA---D--RAEIYSLAFSSNAQWLAVS-SD  323 (368)
Q Consensus       251 ~~~~~~~~~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~~---~--~~~v~~l~~sp~~~~l~s~-s~  323 (368)
                      ..........+.+++|+++|++|+.+ ..++. |++||+.+++.+..+....   +  ......++|+|++++++++ +.
T Consensus       149 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~  227 (300)
T TIGR03866       149 IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP  227 (300)
T ss_pred             EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence            32211223346789999999987554 45888 9999999998877665311   1  1123568899999986543 55


Q ss_pred             CCeEEEEEccCCCCC
Q 017642          324 KGTVHVFNLKVNSGS  338 (368)
Q Consensus       324 dg~i~iwd~~~~~~~  338 (368)
                      ++.|.+||+++++..
T Consensus       228 ~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       228 ANRVAVVDAKTYEVL  242 (300)
T ss_pred             CCeEEEEECCCCcEE
Confidence            678999999876654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.2e-21  Score=177.88  Aligned_cols=245  Identities=14%  Similarity=0.204  Sum_probs=192.7

Q ss_pred             CCCEEEEEEcCCCCE----EEEEe-CCeEEEEEecCC----CcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCC
Q 017642           85 PPTLLHISFNQDHGC----FAAGT-DHGFRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP  154 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~----l~~~~-d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~  154 (368)
                      ..+-+.++|.+.|..    ||.|. ||.|.+||....    +......+. .|...|..+.|++... .+++|+.|    
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~----  138 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD----  138 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC----
Confidence            346788999988776    66666 777999998652    222223343 7889999999998665 88999988    


Q ss_pred             CCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCC--CeeEEEEecC
Q 017642          155 LNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQG  225 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~  225 (368)
                       |.|.|||++.-+.-..+.   ..+.|.+++|+..-..++    .+|.+.|||++..+.+-.+..+.+  .+..+.|+|+
T Consensus       139 -geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  139 -GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             -CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence             999999998755444442   567899999998654444    478999999998877776655444  3567999999


Q ss_pred             CCeEEEEeecCCC-CeEEEEecCc--ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          226 VGSLVLVCPGLQK-GQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       226 ~~~~~l~~~g~~d-g~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      ....+++++++.. -.|.+|+.+.  ..++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+.++..  
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~--  294 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA--  294 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC--
Confidence            9887777655322 2455588654  6677889999999999999966 79999999999 99999999999999987  


Q ss_pred             CcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642          302 DRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ....+..+.|+|..- .+++++-||.|.||.+......
T Consensus       295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~  332 (1049)
T KOG0307|consen  295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD  332 (1049)
T ss_pred             CCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence            567899999999665 7888899999999999877643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=1.2e-19  Score=159.92  Aligned_cols=244  Identities=14%  Similarity=0.129  Sum_probs=168.6

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..|.+.|..+.|-|....|++++ |.++++||++..+..-...+. +|...+.+++|.+ +...|++|+.|     |.|.
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRD-----g~il  170 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRD-----GEIL  170 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCC-----CcEE
Confidence            47999999999999555667766 889999999887765444343 8999999999987 45678889988     9999


Q ss_pred             EEeCCCCc--------------------EE-------EEEe-cCCceeE---EEEeeCccEEE----eCCcEEEEEcCCC
Q 017642          160 IWDDHQSR--------------------CI-------GELS-FRSEVRS---VKLRRDRIIVV----LEQKIFVYNFADL  204 (368)
Q Consensus       160 vwd~~~~~--------------------~~-------~~~~-~~~~v~~---~~~~~~~~~l~----~d~~i~vwd~~~~  204 (368)
                      |||++-..                    ..       .... +...|.+   +.+..|...|+    .|+.|+|||++..
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99976322                    00       0001 2333444   55556666666    4999999999875


Q ss_pred             eEEEEE--------ecc---CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee---eeeccCc---ceEEEEEC
Q 017642          205 KLLHQI--------ETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDS---RIACFALT  267 (368)
Q Consensus       205 ~~~~~~--------~~~---~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~~~~~---~i~~v~~s  267 (368)
                      ......        ..+   ...+.++.....|.+++.-|   .|+.|++|+.....+.   .+.++..   .+.+ ..+
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lS  326 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELS  326 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEeccccCcCchhhccCcccceeeeee-ecC
Confidence            432221        112   22344555555667644333   5999999887764333   3333221   1222 358


Q ss_pred             CCCCEEEEEeCCCcEEEEEECCCCceeE-eeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCC
Q 017642          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       268 p~g~~l~s~~~dg~~i~iwd~~~~~~~~-~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ||+.+|++|+.|.. .++|.+.+.+.-. .+.+  |...|++++|.|.. .-++++++|.+++||++..+-..
T Consensus       327 pd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  327 PDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             CCCceEeccCCCcc-eeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence            99999999999999 9999998866443 4444  78899999998743 34667799999999999766544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=3.4e-18  Score=146.97  Aligned_cols=237  Identities=16%  Similarity=0.237  Sum_probs=179.9

Q ss_pred             CCCCEEEEEEcCCCC-EEEEEeCCeEEEEEecCCCcceEE-EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           84 PPPTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        84 h~~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      ..+.|...+|+|.+. ++++.+.+.+..|+++.+...... .|+......|.++.|.+++..+.+.+.      |.|.||
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~------G~i~Iw  272 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG------GNILIW  272 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC------ceEEEE
Confidence            356788899999765 556666888999998876654332 344344578999999999988776554      999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE------------E------------------
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL------------H------------------  208 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~------------~------------------  208 (368)
                      +..+.+..+... |.+.|.+++...+|.++.  .|..|..||- .-+.+            +                  
T Consensus       273 ~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  273 SKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             eCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence            988777766666 999999999999999998  6889999983 21111            1                  


Q ss_pred             -----------EEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642          209 -----------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       209 -----------~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~  277 (368)
                                 ...+|......++.+|+.+.  +++ ++.|+.+++|+ ..+.. --+.-..++.|+.|+|.| .+|.|.
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q--~~T-~gqdk~v~lW~-~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt  425 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQ--LLT-CGQDKHVRLWN-DHKLE-WTKIIEDPAECADFHPSG-VVAVGT  425 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhh--eee-ccCcceEEEcc-CCcee-EEEEecCceeEeeccCcc-eEEEee
Confidence                       11234445556677777664  333 56899999998 33332 223345688999999999 999999


Q ss_pred             CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ..|. ..+.|.++...+ .+..  ...++..+.|+|+|.+||.|+.|+.|+||.+.....
T Consensus       426 ~~G~-w~V~d~e~~~lv-~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  426 ATGR-WFVLDTETQDLV-TIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             ccce-EEEEecccceeE-EEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence            9999 999999885555 4444  467999999999999999999999999999987654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=1.5e-19  Score=161.13  Aligned_cols=256  Identities=11%  Similarity=0.191  Sum_probs=197.1

Q ss_pred             ccCCCCCEEEEEEcC------------CCCEEEEEe-CCeEEEEEecCCC--cceEEEcc--------------------
Q 017642           81 SSSPPPTLLHISFNQ------------DHGCFAAGT-DHGFRIYNCDPFR--EIFRRDFE--------------------  125 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~------------~g~~l~~~~-d~~i~iw~~~~~~--~~~~~~~~--------------------  125 (368)
                      .-.|...|+.+.--|            .+ .+++++ |++|++|+++...  ..+.+.+.                    
T Consensus       365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~  443 (1080)
T KOG1408|consen  365 MLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA  443 (1080)
T ss_pred             eeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence            345666676665544            23 456666 9999999987521  11111100                    


Q ss_pred             ------------cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeC---ccE
Q 017642          126 ------------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---RII  189 (368)
Q Consensus       126 ------------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~---~~~  189 (368)
                                  -+.+.++.+++.+|++..+++|+..     |+|+||++..-+....+. |...|.|+.++..   .++
T Consensus       444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL  518 (1080)
T KOG1408|consen  444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL  518 (1080)
T ss_pred             cCCcccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence                        1345678899999999999999988     999999999988888888 9999999999863   455


Q ss_pred             EE---eCCcEEEEEc-CCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeec-----cCc
Q 017642          190 VV---LEQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMA-----HDS  259 (368)
Q Consensus       190 l~---~d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~-----~~~  259 (368)
                      ++   .|.-|+|||+ ++..+++++.+|...|+++.|...|-..-++. ++.|..|.+.... ......+..     ...
T Consensus       519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis-cGADksimFr~~qk~~~g~~f~r~t~t~~kt  597 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS-CGADKSIMFRVNQKASSGRLFPRHTQTLSKT  597 (1080)
T ss_pred             hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe-ccCchhhheehhccccCceeccccccccccc
Confidence            66   5889999999 45567889999999999999998885544554 3468887773322 111222222     234


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .++.|+..|..+++++++.|.. |+|||+.+++..+.|++.. |.+....+...|.|.||++.+.|++|.++|+.+++-.
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence            6899999999999999999999 9999999999999998753 4578889999999999999999999999999999887


Q ss_pred             CCCCCC
Q 017642          339 ARSEPR  344 (368)
Q Consensus       339 ~~~~~~  344 (368)
                      ...-++
T Consensus       677 A~m~GH  682 (1080)
T KOG1408|consen  677 AQMTGH  682 (1080)
T ss_pred             hhhcCc
Confidence            766665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.85  E-value=5.1e-20  Score=156.11  Aligned_cols=201  Identities=16%  Similarity=0.221  Sum_probs=157.0

Q ss_pred             cccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCc----c-eEEEcccCCceeEEEEEEeCC-eEEEEecCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFRE----I-FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDP  151 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~  151 (368)
                      ...+|...=+.++|++... .|++++ |++|++||+.....    . ....+ ++|...|-.++|++- ...++++++| 
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd-  249 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDD-  249 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCC-
Confidence            5668888788899998643 455555 88899999975443    1 22334 488888999999874 3456667776 


Q ss_pred             CCCCCcEEEEeCCC--CcEEEEEe-cCCceeEEEEeeCccEE-E---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEe
Q 017642          152 QYPLNKVMIWDDHQ--SRCIGELS-FRSEVRSVKLRRDRIIV-V---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       152 ~~~~~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l-~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~  223 (368)
                          +.+.|||+++  .++..... |.+.|.+++|+|-+.++ +   .|++|.+||+|+. +++.++.+|...|..+.|+
T Consensus       250 ----~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  250 ----GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             ----CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence                9999999994  45555555 99999999999965544 4   5999999999885 5688899999999999999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCc---------------ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEE
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYAS---------------KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFN  287 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~---------------~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd  287 (368)
                      |+.+. ++|+ ++.|+.+.||+...               +.+..-.+|...|..+.|+|+.. .|+++++|+. +.||.
T Consensus       326 Ph~et-vLAS-Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~  402 (422)
T KOG0264|consen  326 PHNET-VLAS-SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQ  402 (422)
T ss_pred             CCCCc-eeEe-cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce-EEEee
Confidence            99987 4565 44899999998764               12234458999999999999887 6888999999 99998


Q ss_pred             CC
Q 017642          288 TL  289 (368)
Q Consensus       288 ~~  289 (368)
                      +.
T Consensus       403 ~s  404 (422)
T KOG0264|consen  403 MA  404 (422)
T ss_pred             cc
Confidence            75

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.84  E-value=4.7e-19  Score=160.51  Aligned_cols=234  Identities=15%  Similarity=0.213  Sum_probs=179.6

Q ss_pred             CCEEEEEEcCCC----CEEEEEe--CCeEEEEEecCCCcceEEEccc----CCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           86 PTLLHISFNQDH----GCFAAGT--DHGFRIYNCDPFREIFRRDFER----GGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        86 ~~v~~~~~s~~g----~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      .+|..+++....    .-++++.  +..++.|++.+...- ...+.+    .....+.+++.+..+.+.+.|...     
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G-~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-----  469 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG-RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-----  469 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc-cEEecCccccccCcceEEEEEeccCceEEEeccC-----
Confidence            366666665432    1244444  555999998754431 122221    244667777776666555555444     


Q ss_pred             CcEEEEeCCCCcEEEEE----ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          156 NKVMIWDDHQSRCIGEL----SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      |.|-+|++++|-....+    .|.++|++++...-++.++   .+|.++.||..+...+..+.. ...+.++..+....-
T Consensus       470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l  548 (910)
T KOG1539|consen  470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDL  548 (910)
T ss_pred             CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhh
Confidence            99999999999988888    3999999999998887777   699999999988887777753 446677777777764


Q ss_pred             EEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE
Q 017642          229 LVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                      +.+   +..|-.|++ +..+.+.++.+.+|.+.|+.++|||||++|++++.|++ |++||+.++.++-.+..   +.++.
T Consensus       549 ~a~---~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~v---d~~~~  621 (910)
T KOG1539|consen  549 LAI---ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLLV---DSPCT  621 (910)
T ss_pred             hhh---hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEec---CCcce
Confidence            333   446888888 66666778889999999999999999999999999999 99999999999988774   56899


Q ss_pred             EEEEecCCCEEEEEeCC-CeEEEEEcc
Q 017642          308 SLAFSSNAQWLAVSSDK-GTVHVFNLK  333 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~d-g~i~iwd~~  333 (368)
                      ++.|+|+|.+||+...| .-|++|-=.
T Consensus       622 sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  622 SLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             eeEECCCCCEEEEEEecCceEEEEEch
Confidence            99999999999999877 569999643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=7.2e-18  Score=144.97  Aligned_cols=229  Identities=17%  Similarity=0.256  Sum_probs=174.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .-|.|++|.++|..+..-+++.|.||+...  ....+... .|...+.+++.-.++..+. ++.|     ..|..||- .
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~--~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd~-~  316 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGT--NRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWDD-N  316 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCC--ceEEeEee-ecCCceEEEEEecCccEee-cCcc-----ceEEeccc-c
Confidence            579999999999865544477799999643  33334443 7889999999999998887 8887     99999982 2


Q ss_pred             CcE------------------------------------------EEEEecCCceeEEEEeeCccEEE---eCCcEEEEE
Q 017642          166 SRC------------------------------------------IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYN  200 (368)
Q Consensus       166 ~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd  200 (368)
                      -+.                                          +..+.|....+.++.+|+...++   .|+.+++|+
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence            110                                          01112666788888888776666   599999999


Q ss_pred             cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC
Q 017642          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (368)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg  280 (368)
                        ..+++.+.. ...+..++.|+|.|   .++. |...|...+.+.+.+.+.++.....++++++|+|+|.+||.|+.|+
T Consensus       397 --~~k~~wt~~-~~d~~~~~~fhpsg---~va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  397 --DHKLEWTKI-IEDPAECADFHPSG---VVAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             --CCceeEEEE-ecCceeEeeccCcc---eEEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence              555555443 45688899999999   3454 7778888886666566556655588999999999999999999999


Q ss_pred             cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      . |+||-+..........+..+..+|+.+.||+|+++|.+-+.|-.|..|.-
T Consensus       470 ~-iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  470 H-IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             e-EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            9 99999876544444333335589999999999999999999999999943

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.9e-18  Score=140.27  Aligned_cols=221  Identities=13%  Similarity=0.208  Sum_probs=168.9

Q ss_pred             EEEEe-CCeEEEEEecCCC------cc--e--EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642          100 FAAGT-DHGFRIYNCDPFR------EI--F--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus       100 l~~~~-d~~i~iw~~~~~~------~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      +++|+ +..|.=++++...      ..  +  ...+ +.|...+.+++.  ++.++++|+.|     -+|+|||+.....
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~q   75 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQ   75 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhh
Confidence            45566 6666666665332      11  1  1122 367777777776  56788999988     9999999999888


Q ss_pred             EEEEe-cCCceeEEEEeeCc---cEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          169 IGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       169 ~~~~~-~~~~v~~~~~~~~~---~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                      +..+- |.+.|+++.|.++.   .++.  .||.|.+|+....+++..++.|.+.|+.++++|.++- .|.  -+.|+.++
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALs--Vg~D~~lr  152 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL-ALS--VGGDQVLR  152 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCce-EEE--EcCCceee
Confidence            88877 99999999999876   3444  7999999999999999999999999999999999973 333  34699999


Q ss_pred             EEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       243 i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      +|+.-.........-....+.|.|+|.|.+++.+..++  |-||.+.+.....++..   ...+.++.|. ++..|++|+
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~  226 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG  226 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence            98865544433333333445699999999999988886  89999988877766653   3467788875 567888999


Q ss_pred             CCCeEEEEEccCCCC
Q 017642          323 DKGTVHVFNLKVNSG  337 (368)
Q Consensus       323 ~dg~i~iwd~~~~~~  337 (368)
                      +|+.|.+||.+....
T Consensus       227 d~~~i~~~D~ds~~~  241 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTP  241 (362)
T ss_pred             CCceEEEeccCCCcc
Confidence            999999999987444

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=9.7e-19  Score=160.14  Aligned_cols=226  Identities=14%  Similarity=0.137  Sum_probs=173.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc-eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      +...|.+++..  +.+|++|+ ++.|.+|....++.. ...    .-...+..++++.++..++.|++|     -.|++.
T Consensus        55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~----Rftlp~r~~~v~g~g~~iaagsdD-----~~vK~~  123 (933)
T KOG1274|consen   55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILA----RFTLPIRDLAVSGSGKMIAAGSDD-----TAVKLL  123 (933)
T ss_pred             cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceee----eeeccceEEEEecCCcEEEeecCc-----eeEEEE
Confidence            66778887754  44888888 788999998776654 222    233457788899999999999988     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc--------CCCeeEEEEecCCCeE
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVSQGVGSL  229 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~  229 (368)
                      ++.+......+. |.++|.++.|+|++.+++   .||.|++||+.++.+..++.+-        ...+..++|+|++..+
T Consensus       124 ~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l  203 (933)
T KOG1274|consen  124 NLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL  203 (933)
T ss_pred             eccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence            999988888887 999999999999999999   5999999999998876666431        2345668999998876


Q ss_pred             EEEeecCCCCeEEEEecCc-ceeeeee--ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          230 VLVCPGLQKGQVRVEHYAS-KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~-~~~~~~~--~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      ++..   .|+.|++++..+ .....+.  .+...+..+.|+|+|+|||+++.||. |.|||..+.+. +.     ....|
T Consensus       204 a~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~~~-~~-----~~~~V  273 (933)
T KOG1274|consen  204 AVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTHER-HE-----FKRAV  273 (933)
T ss_pred             Eeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccchh-cc-----cccee
Confidence            5544   589999966655 3333333  34455999999999999999999999 99999988333 22     23479


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEE
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                      .+++|.|++..+-.-...|...+|
T Consensus       274 c~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  274 CCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             EEEecCCCCCeeEEEeeccccccC
Confidence            999999998866544445544444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=4.1e-18  Score=139.09  Aligned_cols=246  Identities=15%  Similarity=0.175  Sum_probs=178.0

Q ss_pred             ccccCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEecCCCcc--eEEEcccCCceeEEEEEE--eCC--eEEEEec
Q 017642           79 STSSSPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLF--RCN--ILALVGG  147 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-----~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~--~~~~~s~  147 (368)
                      .+...|..+|..++|++     +-..+|+.+.+.+.||+.......  +.......+......++|  ..+  ..+++.+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            45567888999999984     234677777888999998755422  222222224444444444  322  4555555


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE---eccCCCeeE
Q 017642          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI---ETIANPKGL  219 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~---~~~~~~v~~  219 (368)
                      +.-     |.|+|.|+.++++...+. |...|..+.+.|+...++    .|..|++|++++..++..+   .+|.+.|.+
T Consensus       112 G~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS  186 (385)
T KOG1034|consen  112 GYL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS  186 (385)
T ss_pred             cce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence            555     999999999999999988 999999999999874443    5999999999999999887   568899999


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCccee-----------------------e------eeeccCc-----------
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------K------FIMAHDS-----------  259 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-----------------------~------~~~~~~~-----------  259 (368)
                      +.|+.+|+.  +++ ++.|..+++|..+.+..                       .      +-.-|..           
T Consensus       187 vD~~~~gd~--i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~  263 (385)
T KOG1034|consen  187 VDFSLDGDR--IAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF  263 (385)
T ss_pred             EEEcCCCCe--eec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence            999999994  554 66899999998762100                       0      0000111           


Q ss_pred             -------------------------------------------ceEEE--EECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642          260 -------------------------------------------RIACF--ALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       260 -------------------------------------------~i~~v--~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                                                                 .|.-|  +|.+.++.||.|...|. |.+||++..++.
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~  342 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPP  342 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCc
Confidence                                                       12222  34566788999999999 999999987653


Q ss_pred             --EeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          295 --QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       295 --~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                        .++........|...+|+.||.+|+..++|++|.-||..
T Consensus       343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence              223322234579999999999999999999999999864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=2.3e-19  Score=142.16  Aligned_cols=238  Identities=13%  Similarity=0.155  Sum_probs=167.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ..+.|...|+++.|..+++ |.+|. .+-|++|++.+........+  .+...+..+..-++ ..+.+-++|     ..+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd-----~~L   79 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRD-----PLL   79 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCC-----ceE
Confidence            4458899999999988777 66676 66699999988776644332  45666777766666 455666666     888


Q ss_pred             EEEeCCCCcEEEE--------------E-----------e-----------------------------cCCceeEEEEe
Q 017642          159 MIWDDHQSRCIGE--------------L-----------S-----------------------------FRSEVRSVKLR  184 (368)
Q Consensus       159 ~vwd~~~~~~~~~--------------~-----------~-----------------------------~~~~v~~~~~~  184 (368)
                      .+|++.-+..+..              +           .                             ..+.+.+..+.
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            8888665211100              0           0                             11234444422


Q ss_pred             e-CccEEE-----eCCcEEEEEcCCCeE----------EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642          185 R-DRIIVV-----LEQKIFVYNFADLKL----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (368)
Q Consensus       185 ~-~~~~l~-----~d~~i~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~  248 (368)
                      . ++..++     .+|.+.+||+.++..          ......|..++.++.+.+.-+.-+   +|+.+..+..|..+.
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNH  236 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCc---CCCccccceeeeecc
Confidence            2 233322     589999999988733          333345778888888876543312   355566666655443


Q ss_pred             c-----eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC
Q 017642          249 K-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       249 ~-----~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      .     ....+.-..-.|..+.+-||++++|+++.|++ ||||..++.+++..++-  |.+.|++++|+|+..++|+++.
T Consensus       237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaask  313 (323)
T KOG0322|consen  237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASK  313 (323)
T ss_pred             ccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccC
Confidence            2     12223334456889999999999999999999 99999999999999987  7899999999999999999999


Q ss_pred             CCeEEEEEc
Q 017642          324 KGTVHVFNL  332 (368)
Q Consensus       324 dg~i~iwd~  332 (368)
                      |++|-+|++
T Consensus       314 D~rISLWkL  322 (323)
T KOG0322|consen  314 DARISLWKL  322 (323)
T ss_pred             CceEEeeec
Confidence            999999986

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=1.2e-18  Score=154.93  Aligned_cols=250  Identities=16%  Similarity=0.199  Sum_probs=179.8

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc----cCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      .+..+|++.|+++.|+|++..|++++ |+++.+|.-+....+......    .+...+.....|++++..+++-+..   
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~---  337 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT---  337 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence            45569999999999999997777777 999999997766554443322    1334568889999999888888876   


Q ss_pred             CCCcEEEEeCCCC-cEEEE--Ee-cCCceeEEEEeeCccEEE---eCCcEEEEEcC--------------------C---
Q 017642          154 PLNKVMIWDDHQS-RCIGE--LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA--------------------D---  203 (368)
Q Consensus       154 ~~~~i~vwd~~~~-~~~~~--~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~--------------------~---  203 (368)
                        |..++|..++. .....  +. |.+.|++++|.|.|.+++   .|.+-|+|---                    .   
T Consensus       338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~  415 (764)
T KOG1063|consen  338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF  415 (764)
T ss_pred             --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence              99999983332 22222  22 888999999999888777   35554443221                    0   


Q ss_pred             ------------CeE-----------------------------------------------------------------
Q 017642          204 ------------LKL-----------------------------------------------------------------  206 (368)
Q Consensus       204 ------------~~~-----------------------------------------------------------------  206 (368)
                                  .+.                                                                 
T Consensus       416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence                        000                                                                 


Q ss_pred             ----------------------EEEEeccCCCeeEEEEecCCCeEEEEeecC--CCCeEEEEecCc-ceeeeeeccCcce
Q 017642          207 ----------------------LHQIETIANPKGLCAVSQGVGSLVLVCPGL--QKGQVRVEHYAS-KRTKFIMAHDSRI  261 (368)
Q Consensus       207 ----------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~--~dg~i~i~~~~~-~~~~~~~~~~~~i  261 (368)
                                            ++.+.+|...|.+++.+|+++-++-+|-.+  ....|++|.... ..+..+..|.-.|
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV  575 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence                                  111115666778888888888432222111  123466677655 5566799999999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE---eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR---RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       262 ~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +.++|+|||++|++++.|++ +.+|........ .+.   ...|..-|++..|+|++.+++++|.|.+|+||.....
T Consensus       576 T~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEECCCCcEEEEeecCce-EEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999999999999 999987543221 111   2338889999999999999999999999999999887

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.83  E-value=9.2e-19  Score=155.65  Aligned_cols=246  Identities=13%  Similarity=0.129  Sum_probs=184.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      ...++|.+.|..++|.|.|++|++.+ |.+-|||---..+.... .+.  .-|.....++++-+....++++.+.     
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wH-EiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-----  428 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWH-EIARPQIHGYDLTCLSFVNEDLQFVSGADE-----  428 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeeccccccccee-eecccccccccceeeehccCCceeeecccc-----
Confidence            45679999999999999999998888 99988876432222111 111  2455666777777756667777665     


Q ss_pred             CcEEEEeCCC-------------------------------------------CcE------------------------
Q 017642          156 NKVMIWDDHQ-------------------------------------------SRC------------------------  168 (368)
Q Consensus       156 ~~i~vwd~~~-------------------------------------------~~~------------------------  168 (368)
                      ..+|+|+...                                           |..                        
T Consensus       429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq  508 (764)
T KOG1063|consen  429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ  508 (764)
T ss_pred             eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence            6777775321                                           100                        


Q ss_pred             ----------EEEEecCCceeEEEEeeCccEEEe--------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          169 ----------IGELSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       169 ----------~~~~~~~~~v~~~~~~~~~~~l~~--------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                                .+.+.|...|.+++.+|+++++++        ...|++|+..+-...+.+..|.-.|+.++|+||+++++
T Consensus       509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL  588 (764)
T KOG1063|consen  509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL  588 (764)
T ss_pred             HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence                      011236678999999999999992        45799999988888888999999999999999999644


Q ss_pred             EEeecCCCCeEEEEecCcce-----eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeEeeEeccCc
Q 017642          231 LVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGADR  303 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~~~-----~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~~  303 (368)
                      -   .+.|.++.+|......     ....+.|..-|..+.|+|++++++|++.|.+ |+||.....  +.+..+....+.
T Consensus       589 s---vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~~~~  664 (764)
T KOG1063|consen  589 S---VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACLKFS  664 (764)
T ss_pred             E---eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchhccC
Confidence            2   4589999998764422     2236789999999999999999999999999 999998877  555443333367


Q ss_pred             ccEEEEEEecC-----CCEEEEEeCCCeEEEEEccC
Q 017642          304 AEIYSLAFSSN-----AQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       304 ~~v~~l~~sp~-----~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ..|+.++|.|-     +..+++|-+.|.|.+|....
T Consensus       665 ~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~  700 (764)
T KOG1063|consen  665 LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR  700 (764)
T ss_pred             CceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence            79999999762     23677888999999999763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=4.2e-20  Score=152.42  Aligned_cols=203  Identities=13%  Similarity=0.161  Sum_probs=155.2

Q ss_pred             CCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEE---
Q 017642          127 GGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYN---  200 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd---  200 (368)
                      +|..+|.+++-+|+. ..+++|+.|     |.|++||+.+.++...++ |.+.|.++++.....+-+ .|.+|+.|.   
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~D-----G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCD-----GEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccC-----ceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence            888999999999887 567888888     999999999999999999 999999999887333323 455555554   


Q ss_pred             -----------------------------------cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe
Q 017642          201 -----------------------------------FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (368)
Q Consensus       201 -----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~  245 (368)
                                                         .+-..+++.+......+.++.|+|-... +|++ +..|+.|.+++
T Consensus       139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas-~~sDrsIvLyD  216 (433)
T KOG0268|consen  139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILAS-CASDRSIVLYD  216 (433)
T ss_pred             CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcch-heee-eccCCceEEEe
Confidence                                               4333344555555556777888887765 4555 45688898855


Q ss_pred             cC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc-eeEeeEeccCcccEEEEEEecCCCEEEEEeC
Q 017642          246 YA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       246 ~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      .. ..+++.+. -...-+.|+|+|.+-.+++|++|.. ++.||++..+ ++....+  |...|.+++|||.|+-+++||.
T Consensus       217 ~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  217 LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             cccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCCcchhccccc
Confidence            44 44444332 2234578999998878999999999 9999998754 5556666  7889999999999999999999


Q ss_pred             CCeEEEEEccCCCCCCC
Q 017642          324 KGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       324 dg~i~iwd~~~~~~~~~  340 (368)
                      |.+|+||.++.+...+.
T Consensus       293 DksIRIf~~~~~~SRdi  309 (433)
T KOG0268|consen  293 DKSIRIFPVNHGHSRDI  309 (433)
T ss_pred             cceEEEeecCCCcchhh
Confidence            99999999988876653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=7.7e-19  Score=142.79  Aligned_cols=197  Identities=17%  Similarity=0.213  Sum_probs=149.3

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc-----EEEEEecCCceeEEEEeeCccEEE----eCCcEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRRDRIIVV----LEQKIF  197 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~  197 (368)
                      +|...+.+++|+.++..+++++.|     +.|++|++++.+     +++.--.-+..+.+.|.||-+-++    ...+++
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            889999999999999999999998     999999987642     222111334678899999977665    477899


Q ss_pred             EEEcCC---CeEEEE--------E-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEE
Q 017642          198 VYNFAD---LKLLHQ--------I-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA  265 (368)
Q Consensus       198 vwd~~~---~~~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~  265 (368)
                      +|.+..   |.....        + +.|.-.+..+-+  -+...++.+ ++.|..|.+|+..++.+..+......-+..+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEE-ecCCCcEEEEecCCceeeeecccccccccee
Confidence            998732   221111        1 122223333333  333335554 7789999999999999988887777778889


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEECC---CC-----ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          266 LTQDGQLLATSSTKGTLVRIFNTL---DG-----TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~---~~-----~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      .+|+|++|++++-.-. |+||++-   .|     ..+..+++  |...|..++|+++...+++.+.||+++|||++-
T Consensus       236 vSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            9999999999998888 9999863   22     23455666  889999999999999999999999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=9.2e-19  Score=155.19  Aligned_cols=231  Identities=15%  Similarity=0.244  Sum_probs=174.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      .|+.++|-|||..|+.+.++.+.+||.+.+...  ..+. +|...|.+++|+.++..+++|+.|     ..|.+|+ ...
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~aD-----K~VI~W~-~kl   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWT-SKL   84 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCCCc-----eeEEEec-ccc
Confidence            799999999999999999899999998766655  6676 999999999999999999999998     9999998 444


Q ss_pred             cEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          167 RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      +-+..+.|.+.|.||.|+|-...++  .=...-+|........+ . .....+.+++|..||..+++   |-.+|+|.+-
T Consensus        85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylal---G~~nGTIsiR  159 (1081)
T KOG1538|consen   85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLAL---GMFNGTISIR  159 (1081)
T ss_pred             cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEE---eccCceEEee
Confidence            4556677999999999999887777  34566788865443221 1 12346778889989886443   6679999885


Q ss_pred             ecCcceeeeee---ccCcceEEEEEC----------------------------------------------CCCCEEEE
Q 017642          245 HYASKRTKFIM---AHDSRIACFALT----------------------------------------------QDGQLLAT  275 (368)
Q Consensus       245 ~~~~~~~~~~~---~~~~~i~~v~~s----------------------------------------------p~g~~l~s  275 (368)
                      +..++....+.   +...+|.+++|+                                              ++|.++..
T Consensus       160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li  239 (1081)
T KOG1538|consen  160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL  239 (1081)
T ss_pred             cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence            55443322222   234445555444                                              45677777


Q ss_pred             EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |+.|+. +++|- +.|-.+.++-.  .+..|+.++..|++++++.|+.||+|..|++-..
T Consensus       240 GGsdk~-L~~fT-R~GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  240 GGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             ccCCCc-eEEEe-ecCeEEeeccc--cceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            777777 77774 56666655544  4568999999999999999999999999998643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-18  Score=149.75  Aligned_cols=216  Identities=10%  Similarity=0.162  Sum_probs=173.0

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .-.|++......++++|+ .+.|+|||+..  ..+.+.+. +|...|.++.|+.+..++++++..     |.|.|..+.+
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t  152 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKT  152 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhcc-CCcceeEEEEecCCcceeEEeccC-----CcEEEEeccc
Confidence            445555555668888888 66799999983  33335565 888999999999999999988876     9999999999


Q ss_pred             CcEEEEEec--CCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          166 SRCIGELSF--RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       166 ~~~~~~~~~--~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      +....+|.+  ...|+-+.|++..+.++    .+|.|.+||+....++..+ +.|..+...++|+|..+.+++.. | .|
T Consensus       153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-G-~D  230 (673)
T KOG4378|consen  153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-G-YD  230 (673)
T ss_pred             CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-c-cc
Confidence            998888884  45677999999887776    5899999999877666554 67888999999999988654433 4 79


Q ss_pred             CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCC
Q 017642          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      ..|.+++...+....--....+...++|.++|.+|+.|+..|. |..||++.. .++..+..  |...|++++|-+..
T Consensus       231 kki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  231 KKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP  305 (673)
T ss_pred             ceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence            9999988776554444455678999999999999999999999 999999864 45666665  78889999998754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=3.4e-18  Score=145.28  Aligned_cols=249  Identities=11%  Similarity=0.089  Sum_probs=182.5

Q ss_pred             cccccCCCCCEEEEEEcCCCC--EEEEEe-CCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCCe-EEEEecCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHG--CFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDP  151 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~  151 (368)
                      ......+.+.|++++|+|...  ++|+|+ -|.|-+||+...+..  ....+ +.|...|.++.|+|.. ..+.+.+.| 
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyD-  256 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYD-  256 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhheeeeccC-
Confidence            455677899999999999754  677777 555999999533222  11233 3788899999998854 456666666 


Q ss_pred             CCCCCcEEEEeCCCCcE--EEEEe-cCCceeEEEEeeCccEEE-e--CCcEEEEEcCCCeE-EEEEeccCCCeeEEEEec
Q 017642          152 QYPLNKVMIWDDHQSRC--IGELS-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKL-LHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~  224 (368)
                          |+|++-|++.+..  +..+. ....+..+.|+.+...++ .  =|...+||++++.. ...+..|...|..++++|
T Consensus       257 ----GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  257 ----GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             ----ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence                9999999987643  33332 344567777877655444 2  25889999987654 556667888999999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecCc---c--eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC----CCceeE
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYAS---K--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----DGTLLQ  295 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~~---~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~----~~~~~~  295 (368)
                      ...+ +++ +++.|++.+||+...   +  +......|...|.++.|||.+-.|++.+.|.. |+|||..    ..++..
T Consensus       333 ~~p~-~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  333 VCPW-FLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLG  409 (498)
T ss_pred             CCch-hee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccc
Confidence            9887 344 477999999998764   1  12344579999999999998888999999999 9999983    344444


Q ss_pred             eeEeccCc----ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          296 EVRRGADR----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       296 ~~~~~~~~----~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .+... +.    -......|.|+..++++|-.-..|-|+|-+.++
T Consensus       410 ~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  410 TIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eeecc-CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            44411 11    124456899999999999988899999988877

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.1e-17  Score=146.80  Aligned_cols=230  Identities=15%  Similarity=0.211  Sum_probs=173.3

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE-EEe--cCCceeEEEEeeCccEEE--eCCcEEEEEcC
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA  202 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~  202 (368)
                      .+..+.+++++.+...++.+-.+     |.|.+|++..+=... .+.  ....|.+++|.+.++++.  .+|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence            45678899998887778887777     999999998763332 333  567899999998888777  69999999999


Q ss_pred             CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee---eeeccCcceEEEEECCCCCEEEEEeCC
Q 017642          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~~~~~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      +++....+....+.+++++.+|.++.+.  . |+.||.+.........+.   .+...++.|.+++|++++..|+.|+.|
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~--I-gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D  175 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILA--I-GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID  175 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEE--e-ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence            9999999999999999999999997533  3 678996655555544433   244556889999999999999999999


Q ss_pred             CcEEEEEECCCCceeEeeEe-----cc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCCC---CCC
Q 017642          280 GTLVRIFNTLDGTLLQEVRR-----GA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS---DPT  350 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~  350 (368)
                      |. |++||..++..++....     .. ...-|+++.|-.++ .|++|..-|+|.+||-..+.....-..+.++   ...
T Consensus       176 g~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav  253 (691)
T KOG2048|consen  176 GV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV  253 (691)
T ss_pred             ce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE
Confidence            99 99999999987763221     11 23468888888654 6889999999999999999877654444332   122


Q ss_pred             ccCCCcccccceeeeee
Q 017642          351 LPTSSLSFIKGEESIFI  367 (368)
Q Consensus       351 ~~~~~~~~~~~~~~~~~  367 (368)
                      ......-|..|.-|+.|
T Consensus       254 ~~~~d~vfsaGvd~~ii  270 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKII  270 (691)
T ss_pred             cCCCCeEEEccCCCceE
Confidence            33344556666655443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=8.4e-18  Score=136.61  Aligned_cols=193  Identities=13%  Similarity=0.150  Sum_probs=155.4

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL  207 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~  207 (368)
                      ..++.|++.|.+++.|..|     |.|.|||+.+....+.+. |-.+|.+++|++||+.++   .|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            7789999999999999988     999999999998888887 999999999999999998   5999999999999999


Q ss_pred             EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc-----CcceEEEEECCCCCEEEEEeCCCcE
Q 017642          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----DSRIACFALTQDGQLLATSSTKGTL  282 (368)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~-----~~~i~~v~~sp~g~~l~s~~~dg~~  282 (368)
                      +.+. ...+|..+.|+|...+.++++--  +..-.+-.........+...     .....+..|++.|+++++|...|. 
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-  176 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-  176 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence            8886 57799999999998887777632  22222211111111111110     111233468999999999999999 


Q ss_pred             EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +.|+|..+.+++..++.. ....|..+.|+..|+.|+.-+.|+.||.|+++.
T Consensus       177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            999999999999988863 236899999999999999999999999999873

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1.3e-17  Score=139.83  Aligned_cols=244  Identities=16%  Similarity=0.177  Sum_probs=174.0

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEeCCe-EEEEEec--------C------CCcceEEEcccCCceeEEEEEEeCCeEE
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFERGGGIGVVEMLFRCNILA  143 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~d~~-i~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (368)
                      +..+.|...|+++.|+|+|.+||+|+|++ |.+|...        +      ......+.+. +|...+..++|.+++.+
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCce
Confidence            56678999999999999999999999555 9999865        1      1122334454 78899999999999999


Q ss_pred             EEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEe--------
Q 017642          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE--------  211 (368)
Q Consensus       144 ~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~--------  211 (368)
                      +++++-|     +.+++||+..|.....+. |...|..++|.|-+++++   .|...+.+.+...+.++...        
T Consensus       138 l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~  212 (434)
T KOG1009|consen  138 LVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA  212 (434)
T ss_pred             eeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence            9999988     999999999999999988 999999999999999888   46666666664433222211        


Q ss_pred             c--cCC-------------CeeEEEEecCCCeEEEEeecCCCCeEEE---------EecCc----ceeeeeeccCcceEE
Q 017642          212 T--IAN-------------PKGLCAVSQGVGSLVLVCPGLQKGQVRV---------EHYAS----KRTKFIMAHDSRIAC  263 (368)
Q Consensus       212 ~--~~~-------------~v~~~~~~~~~~~~~l~~~g~~dg~i~i---------~~~~~----~~~~~~~~~~~~i~~  263 (368)
                      .  ..+             -...++|+|+|..+  +. .  +|.+++         +..+.    ++...+..-..+...
T Consensus       213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll--vt-P--ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~la  287 (434)
T KOG1009|consen  213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL--VT-P--AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALA  287 (434)
T ss_pred             cCCCCcceeeeeecCchhhhhhhcccCCCCcEE--Ec-c--cceeeeCCceeeceeEeeccccccCceeecCCCCcceEE
Confidence            0  001             12346788888742  22 1  222222         22222    223334444444555


Q ss_pred             EEECC------------------CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          264 FALTQ------------------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       264 v~~sp------------------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      +.|+|                  -+-.+|.++.+.  |.|||..+.+++..+..- |-..|++++|++||..|+..+.||
T Consensus       288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             EEeeeeEEEeccccccccccccccceEEEEeecce--EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCC
Confidence            55544                  223566666664  999999998888776654 678999999999999999999999


Q ss_pred             eEEEEEccCCC
Q 017642          326 TVHVFNLKVNS  336 (368)
Q Consensus       326 ~i~iwd~~~~~  336 (368)
                      ..-+--++..+
T Consensus       365 yCS~vtfe~~e  375 (434)
T KOG1009|consen  365 FCSLVTFEPWE  375 (434)
T ss_pred             ceEEEEEcchh
Confidence            87777666544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=1.6e-17  Score=133.40  Aligned_cols=245  Identities=14%  Similarity=0.123  Sum_probs=180.9

Q ss_pred             cccccCCCCCEEEEEEcCCC-CEEEEEeC----C----eEEEEEecCCCcc-------eEEEcccCCceeEEEEEEeCCe
Q 017642           78 ESTSSSPPPTLLHISFNQDH-GCFAAGTD----H----GFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFRCNI  141 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g-~~l~~~~d----~----~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  141 (368)
                      ......|.+.|+.++-+|-. ++|+++..    .    ++.||.+......       ....+...+-..+.++.|.|+.
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            44567788999999999954 56666542    2    2789998543221       1122222233467888999998


Q ss_pred             EEEEecCCCCCCCCCcEEEEeCCCCcE-EEEEe------cCCceeEEEEee--CccEEE--eCCcEEEEEcCCCeEEEEE
Q 017642          142 LALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS------FRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~l~--~d~~i~vwd~~~~~~~~~~  210 (368)
                      ..+++-.+      +.|.+|++..+.. +..+.      +....++-+|+|  ++..++  .|+++..||+++.++...+
T Consensus       136 ~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI  209 (370)
T KOG1007|consen  136 DKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI  209 (370)
T ss_pred             CeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence            88888764      8999999987755 44442      456778889998  677776  7999999999998877766


Q ss_pred             -eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEE
Q 017642          211 -ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIF  286 (368)
Q Consensus       211 -~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iw  286 (368)
                       ..|...+..+.|+|+-+. +|++ ++.||.|+||+...  .++..+.+|...|.++.|+|.. ++|++|+.|.. |.+|
T Consensus       210 ~dAHgq~vrdlDfNpnkq~-~lvt-~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Ls  286 (370)
T KOG1007|consen  210 EDAHGQRVRDLDFNPNKQH-ILVT-CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLS  286 (370)
T ss_pred             hhhhcceeeeccCCCCceE-EEEE-cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEE
Confidence             457778999999999876 3443 67899999998765  5677889999999999999954 58889999999 9999


Q ss_pred             ECCCC-----------------------------ceeEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEcc
Q 017642          287 NTLDG-----------------------------TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       287 d~~~~-----------------------------~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~  333 (368)
                      ....-                             ..+.++..  |...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus       287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            65321                             11223444  778999999997555 56777999999876653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=6.7e-18  Score=142.97  Aligned_cols=206  Identities=18%  Similarity=0.289  Sum_probs=164.3

Q ss_pred             ccccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL  155 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~  155 (368)
                      .....|++.|.+++|+..-+ .||+|+ |.+|++||+++++..  ..+. .|...|.++.|++ ...++++|+.|     
T Consensus       237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~--~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D-----  308 (463)
T KOG0270|consen  237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK--SSIT-HHGKKVQTLEWHPYEPSVLLSGSYD-----  308 (463)
T ss_pred             cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc--eehh-hcCCceeEEEecCCCceEEEecccc-----
Confidence            34568999999999998754 678888 999999999988877  5564 6788889999987 45778899988     


Q ss_pred             CcEEEEeCCC-CcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQ-SRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ++|.+.|.+. ...-..++..+.|..++|.+.....+    .||+++-+|+|.. +++.+++.|.++|.+++++..-.++
T Consensus       309 ~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~  388 (463)
T KOG0270|consen  309 GTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGL  388 (463)
T ss_pred             ceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcc
Confidence            9999999984 34445667889999999999654433    5899999999875 8999999999999999999887763


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeeccC---cceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeE
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQ  295 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~  295 (368)
                       ++ +++.|+.+++|............|.   +...|.++.|+-. +|+.|+..+. ++|||+.+...+.
T Consensus       389 -l~-t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  389 -LS-TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPVR  455 (463)
T ss_pred             -ee-eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhHH
Confidence             33 4788999999998876555444443   2356777777655 7888888887 9999998876553

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.78  E-value=4.3e-18  Score=150.17  Aligned_cols=100  Identities=17%  Similarity=0.371  Sum_probs=86.0

Q ss_pred             cCCCCeEEEEecCc--------ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          235 GLQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       235 g~~dg~i~i~~~~~--------~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      +..||.|++|....        .....+..|...|+++.|+|-. ..|++++.|.+ |++||+.+++....+.+  |...
T Consensus       646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--Htdq  722 (1012)
T KOG1445|consen  646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQ  722 (1012)
T ss_pred             cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCc
Confidence            34678888887653        2345678899999999999943 58999999999 99999999999889988  8899


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |.+++|||||+.+++.+.||+|+||+-+.+++
T Consensus       723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             eeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            99999999999999999999999999877643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.78  E-value=1.4e-15  Score=138.53  Aligned_cols=249  Identities=20%  Similarity=0.344  Sum_probs=190.5

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeE-EEEe-cCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNIL-ALVG-GGPDPQYPL  155 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~s-~~~d~~~~~  155 (368)
                      ....|...|.++.|.+.+..++.++ |+.+.+|+....... ...+...+...+..+.. .+++. .+.. ...|     
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKL-IKSLEGLHDSSVSKLALSSPDGNSILLASSSLD-----  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCcee-EEEEeccCCCceeeEEEECCCcceEEeccCCCC-----
Confidence            5668999999999999999999888 888999998766511 12232112123444444 55554 4444 3435     


Q ss_pred             CcEEEEeCCC-CcEEEEEe-cCCceeEEEEeeCccEEE---e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~---~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      +.+.+||... ......+. |...|..++|++++..++   . |+.+++|++..++.+..+..|...+.++++++++.. 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  212 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-  212 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce-
Confidence            8999999887 66666666 999999999999998666   3 899999999988888888889999999999988872 


Q ss_pred             EEEeecCCCCeEEEEecCc-ceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEeeEeccCcccE
Q 017642          230 VLVCPGLQKGQVRVEHYAS-KRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEI  306 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~-~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~v  306 (368)
                      +++ +++.|+.+++|+... .... .+..|.... ...|++++.++++++.|+. +++||+..... +..+..  |...+
T Consensus       213 ~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v  287 (466)
T COG2319         213 LIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSV  287 (466)
T ss_pred             EEE-EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccE
Confidence            333 357899999996653 3344 477777775 4489999988999999999 99999987665 444433  67899


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      .++.|.|++..+++++.|+.+++|++.+......
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            9999999999888888888899998887765443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=4.1e-16  Score=137.94  Aligned_cols=239  Identities=10%  Similarity=0.050  Sum_probs=154.7

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      +....++++|++++|+++.  ++.|.+|+++. +........  ........+.+++++..+++++..    ++.|.+|+
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~----~~~v~v~~  108 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYN----ANCVSVSP  108 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcC----CCeEEEEE
Confidence            4566789999999987775  66799999973 222222222  122234578888887665554421    28999999


Q ss_pred             CCC-C---cEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEE-------EEeccCCCeeEEEEecCCC
Q 017642          163 DHQ-S---RCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       163 ~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~-------~~~~~~~~v~~~~~~~~~~  227 (368)
                      +.+ +   +.+..+.+......++++|++++++    .++.|.+||+.+...+.       .+.. ......+.|+|+++
T Consensus       109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~  187 (330)
T PRK11028        109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ  187 (330)
T ss_pred             ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence            864 3   2333333445678889999998875    47899999997633221       1111 22345689999999


Q ss_pred             eEEEEeecCCCCeEEEEecCc-----ceeeeeecc------CcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeE
Q 017642          228 SLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQ  295 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~------~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~  295 (368)
                      .++++.  ..++.|.+|+.+.     +.+..+..+      ......+.++|+|++|+++.. ++. |.+|++.......
T Consensus       188 ~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~  264 (330)
T PRK11028        188 YAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVL  264 (330)
T ss_pred             EEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeE
Confidence            866653  3478999977652     122222211      112346889999999988865 566 9999986543211


Q ss_pred             eeEecc-CcccEEEEEEecCCCEEEEEeC-CCeEEEEEccC
Q 017642          296 EVRRGA-DRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV  334 (368)
Q Consensus       296 ~~~~~~-~~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~~  334 (368)
                      ++.... -......+.|+|||++|+++.. +++|.+|+++.
T Consensus       265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            222110 1124567899999999998774 88999999863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.78  E-value=2.6e-17  Score=145.26  Aligned_cols=234  Identities=13%  Similarity=0.138  Sum_probs=164.0

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcc-eE---EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE-
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREI-FR---RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-  171 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~-  171 (368)
                      ..|+.+. |++|.++|.....-. .+   +.. ..|...++++.|.+....|++...|     .++++||+++.+++.. 
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGD-----sT~r~Wdvk~s~l~G~~  138 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGD-----STIRPWDVKTSRLVGGR  138 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCC-----ceeeeeeeccceeecce
Confidence            3677787 777999997643322 01   122 3788999999999988889988887     9999999999988766 


Q ss_pred             -Ee-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeE---------------------------EEEEeccCCCee
Q 017642          172 -LS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL---------------------------LHQIETIANPKG  218 (368)
Q Consensus       172 -~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~---------------------------~~~~~~~~~~v~  218 (368)
                       +. |.+.|.+++|.+....++    .||.|.|||++-...                           ++.-..+...+.
T Consensus       139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~  218 (720)
T KOG0321|consen  139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF  218 (720)
T ss_pred             eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence             43 999999999999876665    599999999964220                           011112222333


Q ss_pred             E---EEEecCCCeEEEEeecCCCCeEEEEecCcce-------e--eeeecc---CcceEEEEECCCCCEEEEEeCCCcEE
Q 017642          219 L---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------T--KFIMAH---DSRIACFALTQDGQLLATSSTKGTLV  283 (368)
Q Consensus       219 ~---~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-------~--~~~~~~---~~~i~~v~~sp~g~~l~s~~~dg~~i  283 (368)
                      .   +.+..|...  ||++|..|+.|+|||.....       .  ..+..|   ...+.++.....|.+|++.+.|+. |
T Consensus       219 ssvTvv~fkDe~t--laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-I  295 (720)
T KOG0321|consen  219 SSVTVVLFKDEST--LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-I  295 (720)
T ss_pred             eeeEEEEEeccce--eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-E
Confidence            3   445556554  55556679999999976522       1  112223   345788888888898888888999 9


Q ss_pred             EEEECCCCc--eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          284 RIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       284 ~iwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++||+.+..  ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+..+.
T Consensus       296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            999998643  344444321111222334689999999999999999999998876543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.4e-17  Score=136.66  Aligned_cols=225  Identities=14%  Similarity=0.223  Sum_probs=160.1

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-  173 (368)
                      ..+|++. .+.|++||..+++..  ..|. .++..+..+.|..  ....+.+++.|     |+|++||++.......+. 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--EEFK-GPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--heec-CCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheec
Confidence            4566666 777999998886555  4454 5555555666644  44556666666     999999999876665554 


Q ss_pred             --cC-CceeEEEEeeCccEEE-------eCCcEEEEEcCCCeE-EEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642          174 --FR-SEVRSVKLRRDRIIVV-------LEQKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       174 --~~-~~v~~~~~~~~~~~l~-------~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i  241 (368)
                        +. .+..+++.+.++.+++       .+-.|.+||++..+. +..+ +.|.+.|+++.|+|....+++  +|+.||.|
T Consensus       113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl--SGSvDGLv  190 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL--SGSVDGLV  190 (376)
T ss_pred             cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE--eecccceE
Confidence              33 4667777776666666       477899999988765 4444 679999999999999887544  58999999


Q ss_pred             EEEecCcc----eeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEe--------------------
Q 017642          242 RVEHYASK----RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQE--------------------  296 (368)
Q Consensus       242 ~i~~~~~~----~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~--------------------  296 (368)
                      .+++....    .+.....|...|.++.|..++ +.|.+.+..++ ..+|+++.+.....                    
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            99776653    233344577789999998877 35777777777 89998864421111                    


Q ss_pred             -----------------------------------------eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          297 -----------------------------------------VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       297 -----------------------------------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                                                               +. +.|..-|.++.|...+.++.+|++||.+.+|..+.
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence                                                     11 11444566777777788999999999999999733

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=4.2e-17  Score=131.06  Aligned_cols=202  Identities=10%  Similarity=0.110  Sum_probs=154.2

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEE---cccCCceeEEEEEEeC--CeEEEEecCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD---FERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~  153 (368)
                      ...+.+-+.|.|+.|.|++..|++-.|+.|.+|+++.........   ....+.....+-.|+|  ++..+++.++    
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d----  192 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD----  192 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC----
Confidence            334456679999999999999999889999999998765531111   1112344455555665  5666666554    


Q ss_pred             CCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE----eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCC
Q 017642          154 PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                        +++..||+++.++...+.  |...|..+.|+|+...++    .||.|++||.+. ..+++.+.+|...+.++.|+|.-
T Consensus       193 --~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  193 --STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             --CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence              899999999998888887  899999999999987666    589999999975 45788899999999999999998


Q ss_pred             CeEEEEeecCCCCeEEEEecC------------------------------cceeeeeeccCcceEEEEECCCCC-EEEE
Q 017642          227 GSLVLVCPGLQKGQVRVEHYA------------------------------SKRTKFIMAHDSRIACFALTQDGQ-LLAT  275 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~------------------------------~~~~~~~~~~~~~i~~v~~sp~g~-~l~s  275 (368)
                      +.++|  +|+.|..|.++...                              ...+.++..|+..|++++|+.-.. ++|+
T Consensus       271 dqLiL--s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  271 DQLIL--SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS  348 (370)
T ss_pred             ceEEE--ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence            87555  46678888775322                              122446778999999999997555 7889


Q ss_pred             EeCCCcEEEEEECC
Q 017642          276 SSTKGTLVRIFNTL  289 (368)
Q Consensus       276 ~~~dg~~i~iwd~~  289 (368)
                      -+.||+ +.|=.+.
T Consensus       349 LSYDGR-viIs~V~  361 (370)
T KOG1007|consen  349 LSYDGR-VIISSVP  361 (370)
T ss_pred             eccCce-EEeecCC
Confidence            999999 7776543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.6e-17  Score=138.81  Aligned_cols=197  Identities=22%  Similarity=0.271  Sum_probs=151.5

Q ss_pred             EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEE
Q 017642          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ  209 (368)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~  209 (368)
                      ..++++.++..+++++.|     |.+|+|+..+...+.... |...|.++.|+|||++++  .....+||+.++|..+..
T Consensus       148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence            677889999999999998     999999977776666555 999999999999999999  233999999999977666


Q ss_pred             Eec--cCCCeeEEEEecCC--CeEEEEeecCCCCeEEE-----EecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCC
Q 017642          210 IET--IANPKGLCAVSQGV--GSLVLVCPGLQKGQVRV-----EHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       210 ~~~--~~~~v~~~~~~~~~--~~~~l~~~g~~dg~i~i-----~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      ...  .......|.|+.|+  ..+++++.-..-+.|+.     |.... -...........|++++.+.+|+++|.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            542  22334567787766  34455554444455554     33321 0111122234469999999999999999999


Q ss_pred             CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      |. |-|++..+.+.++-++. .|...|+.+.|+||.+++++.+.|.++.|..+.-..
T Consensus       303 Gs-Vai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~  357 (398)
T KOG0771|consen  303 GS-VAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK  357 (398)
T ss_pred             Cc-EEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence            99 99999999998877664 488999999999999999999999999999887643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.2e-18  Score=159.61  Aligned_cols=243  Identities=12%  Similarity=0.162  Sum_probs=171.5

Q ss_pred             EEEEcCCCC-EEEEEe-----------CCeEEEEEecCCCcc----eEEEcccCCceeEEEEEEeCCeEE----EEecCC
Q 017642           90 HISFNQDHG-CFAAGT-----------DHGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILA----LVGGGP  149 (368)
Q Consensus        90 ~~~~s~~g~-~l~~~~-----------d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~  149 (368)
                      .++|+|++. +|++|.           +..+.||.++.....    ....+  ........++|...+..    +++|..
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence            468999987 556553           223556665432222    11222  34556677888765544    788888


Q ss_pred             CCCCCCCcEEEEeCCC---C---cEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEe--ccCCC
Q 017642          150 DPQYPLNKVMIWDDHQ---S---RCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANP  216 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~---~---~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~--~~~~~  216 (368)
                      |     |.|.+||...   +   ..+.++. |.+.|..+.|++... +++   .||.|.|||+.+.+.-....  .....
T Consensus        89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            7     9999999765   2   2344445 999999999999766 666   58999999998755433331  24567


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeeccC--cceEEEEECCCCC-EEEEEeCCCc--EEEEEECCC
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHD--SRIACFALTQDGQ-LLATSSTKGT--LVRIFNTLD  290 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~--~~i~~v~~sp~g~-~l~s~~~dg~--~i~iwd~~~  290 (368)
                      |.+++|+..-.+ +|+ +++.+|.+.|||.+.+ .+..+..+.  ..+..++|+|+.. .|+++++|..  .|.+||++.
T Consensus       164 I~~lsWNrkvqh-ILA-S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  164 IKCLSWNRKVSH-ILA-SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             ceEeccchhhhH-Hhh-ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            888888877665 334 5888999999988775 333444433  3478899999875 5666666542  299999985


Q ss_pred             -CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642          291 -GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (368)
Q Consensus       291 -~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~  343 (368)
                       ...++++..  |...|.+|.|++.+ .+|++++.|+.|.+|+.++++...+...
T Consensus       242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence             456677766  88899999999866 7899999999999999999876655444

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2e-17  Score=144.05  Aligned_cols=249  Identities=14%  Similarity=0.175  Sum_probs=178.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC------CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      ....|.+.|+.++|.+....|++++ |+.+++|+++.      ........|. +|...|++++...++..+.+++-|  
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~D--  365 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGID--  365 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccC--
Confidence            5678999999999999999999999 88899999932      1122334565 999999999999999999999998  


Q ss_pred             CCCCcEEEEeCCCC----------cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCee
Q 017642          153 YPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG  218 (368)
Q Consensus       153 ~~~~~i~vwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~  218 (368)
                         |+|+.|++...          .....+. |.+.|+.++++.....++   .||++++|+...... .++........
T Consensus       366 ---g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  366 ---GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ---ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence               99999965421          1223344 999999999999766666   699999999865554 34433222222


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeec-------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      -+.+..-........+...-+.-.+++... ..+..+..       ....+..+.++|.+.+.+++.+|+. |+++|..+
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~  520 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKT  520 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccccc
Confidence            222222222111211111122222222221 12222211       1234778889999999999999999 99999999


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ++.+.....  |...++++++.|+|-+|++++.|+.+++|.+....-.
T Consensus       521 ~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  521 GKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             cccchheee--ccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            999999888  7889999999999999999999999999999766544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=8.3e-18  Score=143.23  Aligned_cols=227  Identities=16%  Similarity=0.164  Sum_probs=183.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      .-.-+.+.++.+|++|+.|+ .+.+..+|+.+....++..+    ...|.++.|--+..+++.+-.      ..++||| 
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-  197 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVAQK------KYVYVYD-  197 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhhhh------ceEEEec-
Confidence            44567899999999999999 56699999988777655443    345566666555555555554      7899999 


Q ss_pred             CCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                      ..|..++.++....|..+.|.|...+++   ..|.++.-|+.+|+.+..+....+.+..++-+|-..   ++..|..+|+
T Consensus       198 ~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---Vih~GhsnGt  274 (545)
T KOG1272|consen  198 NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---VIHLGHSNGT  274 (545)
T ss_pred             CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---eEEEcCCCce
Confidence            8899999999888899999999998888   478999999999999999988888888888777764   5556889999


Q ss_pred             EEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642          241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (368)
Q Consensus       241 i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  319 (368)
                      |.+|..+. ..+..+-.|.++|.+|++.++|+|+||.+.|.. |+|||++....+.++..   ..+...++||..|. ||
T Consensus       275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkgl-LA  349 (545)
T KOG1272|consen  275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKGL-LA  349 (545)
T ss_pred             EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCccccccccccc-ee
Confidence            99999877 455567899999999999999999999999999 99999999887777764   23678889986553 33


Q ss_pred             EEeCCCeEEEEE
Q 017642          320 VSSDKGTVHVFN  331 (368)
Q Consensus       320 s~s~dg~i~iwd  331 (368)
                       .+....|.||.
T Consensus       350 -~~~G~~v~iw~  360 (545)
T KOG1272|consen  350 -LSYGDHVQIWK  360 (545)
T ss_pred             -eecCCeeeeeh
Confidence             34455699995

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.4e-15  Score=123.48  Aligned_cols=201  Identities=16%  Similarity=0.238  Sum_probs=153.5

Q ss_pred             cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe-cCCceeEEEEeeC--ccEEE---eCCc
Q 017642          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQK  195 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~  195 (368)
                      .+|...+.++.|+..|..+++++.|     ++|+|||.+..    .+....+ |.+.|..+.|.+-  |+.++   .|++
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            3677889999999999999999998     99999996533    4555666 9999999999763  77777   6999


Q ss_pred             EEEEEcCC---------CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------ceeeee-----
Q 017642          196 IFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFI-----  254 (368)
Q Consensus       196 i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~-----  254 (368)
                      +.||.-..         -....++......|..+.|.|....+.+|+ .+.||.+||+....       .....+     
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            99998521         123455666778899999999988888887 67899999965432       111122     


Q ss_pred             --eccCcceEEEEECCC---CCEEEEEeCC-----CcEEEEEECCCC----ceeEeeEeccCcccEEEEEEecCC----C
Q 017642          255 --MAHDSRIACFALTQD---GQLLATSSTK-----GTLVRIFNTLDG----TLLQEVRRGADRAEIYSLAFSSNA----Q  316 (368)
Q Consensus       255 --~~~~~~i~~v~~sp~---g~~l~s~~~d-----g~~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~----~  316 (368)
                        ..+..+..|+.|++.   ..+||.|+.+     +. ++||....+    ..+.++.+  |..+|++|+|.|+-    .
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCcee
Confidence              246678899999974   3488888876     35 899976543    34455665  78899999999963    4


Q ss_pred             EEEEEeCCCeEEEEEccCCC
Q 017642          317 WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +||+++.|| |+||+++...
T Consensus       241 ~lAvA~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  241 LLAVATKDG-VRIFKVKVAR  259 (361)
T ss_pred             eEEEeecCc-EEEEEEeecc
Confidence            789999999 9999998643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.74  E-value=8.4e-17  Score=136.89  Aligned_cols=197  Identities=16%  Similarity=0.150  Sum_probs=142.9

Q ss_pred             CceeEEEEEEeC--CeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe-cCCceeEEEEeeCc--cEEE--eCCcE
Q 017642          128 GGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRDR--IIVV--LEQKI  196 (368)
Q Consensus       128 ~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~v~~~~~~~~~--~~l~--~d~~i  196 (368)
                      +...+.+++|+|  +...++.|+..     |+|-+||+.+.    .-+..+. |..+|.++.|+|.+  +++.  .||+|
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKG-----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCC-----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            455666777766  44577777776     99999999532    2233444 89999999999954  3333  79999


Q ss_pred             EEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-
Q 017642          197 FVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-  271 (368)
Q Consensus       197 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~-  271 (368)
                      ++-|++.......+..  .......+.|+.+...+++   |..=|.+.+|+...  .....+.-|...|.+|+++|... 
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~---~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF---GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEE---eecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            9999987643333322  3334556677766665333   34456777766554  33556778888999999999765 


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEe--eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +||+++.|++ ++|||++.......  +..-.|...|.+..|||++..|++.+.|..|+|||..
T Consensus       337 ~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  337 FLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             heeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            8999999999 99999986443332  3333388899999999998889999999999999984

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=3.5e-16  Score=127.69  Aligned_cols=240  Identities=12%  Similarity=0.117  Sum_probs=173.6

Q ss_pred             ccCCCCCEEEEEEc-------CCCCEEEEEe-CCeEEEEEecCCCcceEEEcc-c-CCceeEEEEEEeCCeEEEEecCCC
Q 017642           81 SSSPPPTLLHISFN-------QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-R-GGGIGVVEMLFRCNILALVGGGPD  150 (368)
Q Consensus        81 ~~~h~~~v~~~~~s-------~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~d  150 (368)
                      .-.....|+..+|-       |+..++|+.+ +.-|++||.-+++........ | ..-....++.|++++..+..|.. 
T Consensus       100 r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-  178 (406)
T KOG2919|consen  100 RYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-  178 (406)
T ss_pred             EeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-
Confidence            33445678888885       6677888877 777999998877765432221 1 12335678999999999998876 


Q ss_pred             CCCCCCcEEEEeC-CCCcEEE---EEec-----CCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642          151 PQYPLNKVMIWDD-HQSRCIG---ELSF-----RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPK  217 (368)
Q Consensus       151 ~~~~~~~i~vwd~-~~~~~~~---~~~~-----~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v  217 (368)
                           ..|+++|+ +.|....   ++.+     .+-|.+++|+|-.. .++   ...++-||.-..+.++..+.+|.+.|
T Consensus       179 -----rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv  253 (406)
T KOG2919|consen  179 -----RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV  253 (406)
T ss_pred             -----ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence                 79999998 4443221   1223     56788999999544 555   46677777777888899999999999


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCc-ceEEEEE--CCCCCEEEEEeCCCcEEEEEECCC-C
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDS-RIACFAL--TQDGQLLATSSTKGTLVRIFNTLD-G  291 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~-~i~~v~~--sp~g~~l~s~~~dg~~i~iwd~~~-~  291 (368)
                      +.+.|.++|+.++..  +-.|-.|..|+...  ..+..+..|.+ .-..|-|  .|+|++|++|+.||. |++||+++ +
T Consensus       254 ThL~~~edGn~lfsG--aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~g  330 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSG--ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLG  330 (406)
T ss_pred             eeEEeccCcCeeccc--ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCC
Confidence            999999999975532  33466777788765  45556666655 3334444  688999999999999 99999998 6


Q ss_pred             ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ..+..+..  +...++.++++|--.++++++..   ++|...+
T Consensus       331 n~~sv~~~--~sd~vNgvslnP~mpilatssGq---r~f~~~~  368 (406)
T KOG2919|consen  331 NEVSVTGN--YSDTVNGVSLNPIMPILATSSGQ---RIFKYPK  368 (406)
T ss_pred             Cccccccc--ccccccceecCcccceeeeccCc---eeecCCC
Confidence            76666665  67789999999997788877644   3444443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=7e-16  Score=124.22  Aligned_cols=239  Identities=13%  Similarity=0.173  Sum_probs=172.1

Q ss_pred             CCEEEEEEcC--C-CCEEEEEe-----CCeEEEEEecCCC--cceEEEcccCCceeEEEEEEeCCeE-----EEEecCCC
Q 017642           86 PTLLHISFNQ--D-HGCFAAGT-----DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNIL-----ALVGGGPD  150 (368)
Q Consensus        86 ~~v~~~~~s~--~-g~~l~~~~-----d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~d  150 (368)
                      -.++++.|+.  + +.+||.|+     .+.|.|..++...  ......|  .|...+..+.|.|+..     .+++++  
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f--d~~YP~tK~~wiPd~~g~~pdlLATs~--  120 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF--DHPYPVTKLMWIPDSKGVYPDLLATSS--  120 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC--CCCCCccceEecCCccccCcchhhccc--
Confidence            3678889983  3 44788888     2337777665433  3333344  6777888888877653     456655  


Q ss_pred             CCCCCCcEEEEeCCCCc--EE--EEE------ecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCe---EEEEEecc
Q 017642          151 PQYPLNKVMIWDDHQSR--CI--GEL------SFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK---LLHQIETI  213 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~--~~--~~~------~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~---~~~~~~~~  213 (368)
                           ..+|+|.+...+  ..  ..+      ++..++++..|+. +-+++.   .|-+..|||++++.   ....+-.|
T Consensus       121 -----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH  195 (364)
T KOG0290|consen  121 -----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH  195 (364)
T ss_pred             -----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence                 579999987422  11  111      2567899999988 444554   59999999998863   34556689


Q ss_pred             CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeee--e--ccCcceEEEEECCCC-CEEEEEeCCCcEEEEEEC
Q 017642          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--M--AHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~--~--~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~  288 (368)
                      ..+|..++|...+..++ |+ -+.||.+|+++.......++  +  ....+...++|++.. +++|+-..|...|.|.|+
T Consensus       196 DKEV~DIaf~~~s~~~F-AS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  196 DKEVYDIAFLKGSRDVF-AS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             CcceeEEEeccCccceE-EE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            99999999999776644 44 34799999966654332222  1  224578889998744 589988888766999999


Q ss_pred             CC-CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642          289 LD-GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       289 ~~-~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +. +..+.++++  |.+.|+.++|.|.. ..|+++++|..+.|||+...-.
T Consensus       274 R~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  274 RVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             cCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            86 567778888  89999999999965 5899999999999999987554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=5e-16  Score=125.08  Aligned_cols=237  Identities=10%  Similarity=0.129  Sum_probs=162.7

Q ss_pred             cCCCCCEEEEEEcCCCC-----EEEEEeCCeEEEEEecCCCcceE--EEcc----cCCceeEEEEEEeC-CeEEEEecCC
Q 017642           82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFREIFR--RDFE----RGGGIGVVEMLFRC-NILALVGGGP  149 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~-----~l~~~~d~~i~iw~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~s~~~  149 (368)
                      ..|.-+++.+.|.|+..     +||+. +..+|+|.+...+....  ..+.    ......++++.|+. +-.++.+++-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            57888999999999863     45544 45799999875332211  1111    13445677777764 3344555555


Q ss_pred             CCCCCCCcEEEEeCCCCcE----EEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEec---cCCCee
Q 017642          150 DPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIET---IANPKG  218 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~---~~~~v~  218 (368)
                      |     -+..|||++++..    .+.+.|...|..++|...+.-++    .||.+++||++..+--..+-.   ...+..
T Consensus       172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl  246 (364)
T KOG0290|consen  172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL  246 (364)
T ss_pred             c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence            5     8999999998732    23344999999999999776555    699999999988765444322   234566


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEe--cCcceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCc---
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEH--YASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGT---  292 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~---  292 (368)
                      .++|++...+ ++|+-+.....|.|-+  .....+..+.+|.+.|+.|+|.|... .|++++.|.. +.|||+.+.-   
T Consensus       247 RLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~  324 (364)
T KOG0290|consen  247 RLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPREN  324 (364)
T ss_pred             eeccCcCCch-HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccC
Confidence            6778776654 4444344455666633  33467888999999999999999765 8999999998 9999997532   


Q ss_pred             ---eeEeeEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEE
Q 017642          293 ---LLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       293 ---~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iw  330 (368)
                         ++..+.   ..+.|+.+.|++ .+.+++.+. ++++.|.
T Consensus       325 ~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  325 GEDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             CCCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence               232333   246899999996 456776664 4455554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=1.5e-16  Score=138.04  Aligned_cols=224  Identities=11%  Similarity=0.116  Sum_probs=170.6

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEE-ecCCCcce----------------------------------------
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIF----------------------------------------  120 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~-~~~~~~~~----------------------------------------  120 (368)
                      ..|...|.|+.|+.+...+.+++|+.+.+|. +.+.....                                        
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            3567778889999888888888887766654 32111100                                        


Q ss_pred             ------EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--
Q 017642          121 ------RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--  191 (368)
Q Consensus       121 ------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--  191 (368)
                            ++.+ ..|...+.+-.|++++..+++.+.|     |.|++|. ++|-...++. ....|+|++|.|+...++  
T Consensus        91 ~k~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   91 NKSARVERSI-SAHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             cccchhhhhh-hhhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence                  0001 2455566677889999999999998     9999999 6665444443 788999999999876665  


Q ss_pred             eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCC
Q 017642          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ  271 (368)
Q Consensus       192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~  271 (368)
                      ..+.+.|=.+.....+-..+.|.+-|-++.|++..+  +++ +|++|-..++|+..+..+..-..|+.+|++++|.|+ +
T Consensus       164 ~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~-sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~  239 (737)
T KOG1524|consen  164 QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIA-SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-K  239 (737)
T ss_pred             cCCeEEEeecccccceeEEeccCcEEEEeecCcccc--cee-ecCCceeEEeecccCcccccCChhccceeeeeeccc-c
Confidence            677888888876666667789999999999999887  344 588999999999999999988999999999999999 6


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      .++.++.+ + +|            +... ..+.|..++||+||..++.|+..|.+.+=.
T Consensus       240 ~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  240 DYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEee
Confidence            66666654 2 44            2221 467899999999999999999888766543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=8.1e-16  Score=135.10  Aligned_cols=200  Identities=18%  Similarity=0.225  Sum_probs=156.7

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEE----
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFV----  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~v----  198 (368)
                      +|...+.++..++.+..+++|+.|     |+|+||.+.+|.|++++...+.|.+++|+|.+...+    .+..+.|    
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            899999999999999999999998     999999999999999999999999999999754322    2333333    


Q ss_pred             -----------------------------EEcCC---Ce-EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe
Q 017642          199 -----------------------------YNFAD---LK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH  245 (368)
Q Consensus       199 -----------------------------wd~~~---~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~  245 (368)
                                                   |.-..   ++ -++..-.|...|..+.|+..|+++..++..+....|.|..
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence                                         33211   00 0122234667888999999999877776444556677755


Q ss_pred             cCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC
Q 017642          246 YASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (368)
Q Consensus       246 ~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  324 (368)
                      ...+. ...+....+-|.++.|+|...+|++++...  |+|||+..++.++.+..  ....|..++.+|.|..|+.++.|
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             cccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEEecCC
Confidence            44433 334556677899999999999999888764  99999999888887776  45689999999999999999999


Q ss_pred             CeEEEEEccCC
Q 017642          325 GTVHVFNLKVN  335 (368)
Q Consensus       325 g~i~iwd~~~~  335 (368)
                      +.+..||+.-.
T Consensus       629 ~k~~WfDldls  639 (733)
T KOG0650|consen  629 KKMCWFDLDLS  639 (733)
T ss_pred             CeeEEEEcccC
Confidence            99999999765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.1e-15  Score=130.26  Aligned_cols=198  Identities=15%  Similarity=0.235  Sum_probs=152.4

Q ss_pred             cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEE
Q 017642          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFV  198 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~v  198 (368)
                      +.....+.++.|+|...++.+++.|     +.++||.+.  ....++.+. ...+|.+.+|.|+|. .++   ....++.
T Consensus       210 ~ps~~~I~sv~FHp~~plllvaG~d-----~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTAPLLLVAGLD-----GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             CcCcCCceEEEecCCCceEEEecCC-----CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence            3455678999999999999999998     999999865  345566666 778999999999998 555   3457999


Q ss_pred             EEcCCCeEEEE--EeccC-CCeeEEEEecCCCeEEEEeecCCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEE
Q 017642          199 YNFADLKLLHQ--IETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLA  274 (368)
Q Consensus       199 wd~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~  274 (368)
                      ||+.+.+..+.  ..++. ..+....++++++.  ++. .+..|.|.+-.. ++..+..+ .-.+.|..++|+.||+.|+
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f--ia~-~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~  360 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF--IAI-AGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELL  360 (514)
T ss_pred             eeccccccccccCCCCcccchhheeEecCCCCe--EEE-cccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEE
Confidence            99988765432  22222 23556788999985  443 347899998444 33444333 3467799999999999999


Q ss_pred             EEeCCCcEEEEEECCCCceeEeeEeccCcccE--EEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI--YSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .++.+|. |.+||++...+++.+..   .+.|  ++++.+++|.+||+|+..|.|-|||.++--
T Consensus       361 ~~~~~Ge-V~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  361 ASGGTGE-VYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             EEcCCce-EEEEecCCcceEEEEee---cCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence            9999998 99999999999998885   3334  567778999999999999999999976543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.72  E-value=2.1e-15  Score=126.28  Aligned_cols=210  Identities=13%  Similarity=0.128  Sum_probs=152.8

Q ss_pred             CCCCCCcccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcc-----eEEEcccCCceeEEEEEEeCC-eEE
Q 017642           72 PLPSPAESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI-----FRRDFERGGGIGVVEMLFRCN-ILA  143 (368)
Q Consensus        72 ~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~  143 (368)
                      ......+....+|+.+|..++|+|-. ..||+|+ |..|.||.+-.....     ....+. +|...|--+.|+|. ..+
T Consensus        68 Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NV  146 (472)
T KOG0303|consen   68 GRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNV  146 (472)
T ss_pred             cccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhh
Confidence            33445667788999999999999954 5678888 677999998643321     123444 77777777777763 334


Q ss_pred             EEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe-eE
Q 017642          144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GL  219 (368)
Q Consensus       144 ~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v-~~  219 (368)
                      +++++.|     ++|.+||+.+|+.+.++.|.+.|+++.|+.||.+++   .|..|+|||.++++.+..-..|.+.- ..
T Consensus       147 Llsag~D-----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  147 LLSAGSD-----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR  221 (472)
T ss_pred             HhhccCC-----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence            5555655     999999999999999999999999999999999998   59999999999999988876666543 33


Q ss_pred             EEEecCCCeEEEEeec---CCCCeEEEEecCc--ce--eeeeeccCcceEEEEECCCCCEEE-EEeCCCcEEEEEECCCC
Q 017642          220 CAVSQGVGSLVLVCPG---LQKGQVRVEHYAS--KR--TKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g---~~dg~i~i~~~~~--~~--~~~~~~~~~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd~~~~  291 (368)
                      +.|-.++.   ++++|   ..+.++.+|+...  ..  ...+. ....|.---|.+|.++++ +|-.|+. ||.|++...
T Consensus       222 aifl~~g~---i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d  296 (472)
T KOG0303|consen  222 AIFLASGK---IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNE  296 (472)
T ss_pred             eEEeccCc---eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCC
Confidence            55666776   33334   3577888887654  11  22222 234566666888888655 4556888 999998765


Q ss_pred             c
Q 017642          292 T  292 (368)
Q Consensus       292 ~  292 (368)
                      .
T Consensus       297 ~  297 (472)
T KOG0303|consen  297 P  297 (472)
T ss_pred             C
Confidence            4

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.4e-15  Score=125.88  Aligned_cols=243  Identities=14%  Similarity=0.132  Sum_probs=173.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc----ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      -...|.+-|+++.|+.++++|++|+ |..+++|+++..-.    .......+.|...+.++.|+.....+.+|+.+    
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~----  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW----  126 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc----
Confidence            3568999999999999999999999 66699999863211    11122335778999999999999999999998    


Q ss_pred             CCcEEEEeCCCCcEEEEEecC---CceeEEEEeeCccEEE---eCCcEEEEEcCCCe-EEEEE--eccCCCeeEEEEecC
Q 017642          155 LNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-LLHQI--ETIANPKGLCAVSQG  225 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~-~~~~~--~~~~~~v~~~~~~~~  225 (368)
                       ++|.+-|+++.+.+..+.|.   +.|+.+..+|-...++   .++.|.+||++..+ .+..+  .........+.|+|.
T Consensus       127 -~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  127 -GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             -ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence             99999999999999888754   4999999999655555   58999999997654 22211  222334556778887


Q ss_pred             CCeEEEEeecCCCCeEEEEecCc------------------------------ce-------------------eeeee-
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYAS------------------------------KR-------------------TKFIM-  255 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~------------------------------~~-------------------~~~~~-  255 (368)
                      ...++++  .+..+-+-+|+...                              ..                   ...++ 
T Consensus       206 ~P~Li~~--~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  206 TPALILV--NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             CceeEEe--ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            7664443  33445555555431                              00                   00111 


Q ss_pred             ccC-------cceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-----------------------ceeEeeEeccCccc
Q 017642          256 AHD-------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-----------------------TLLQEVRRGADRAE  305 (368)
Q Consensus       256 ~~~-------~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~  305 (368)
                      .|.       ..+.+++|..|. .+++|+.+-. |++|.+...                       +.+..+++  |..-
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~-i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG--HRSv  359 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWG-IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG--HRSV  359 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce-eeeccCcccc-eEEEecCCCccccCccccCcchhhCchhheecceeEEEec--cccc
Confidence            111       124556665444 4889999988 999987421                       12334666  7888


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +..+.|+|...+|++.+-.+.++||.-.
T Consensus       360 ~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  360 PNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ccceeecCCcceEeccchhhheeccccc
Confidence            9999999999999999999999999653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.4e-15  Score=138.63  Aligned_cols=251  Identities=15%  Similarity=0.133  Sum_probs=177.5

Q ss_pred             CcccccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceE---EEcccCCceeEEEEEEeCCeEE--EEecCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRCNILA--LVGGGP  149 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~s~~~  149 (368)
                      .+...-.-...|+|+.|+|... +|+.|. +|.|.+||+........   ....+.|...++.+.|..+-.-  +++++.
T Consensus       234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss  313 (555)
T KOG1587|consen  234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS  313 (555)
T ss_pred             CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence            3444445677999999999655 555555 77799999987655211   1222578888888888654333  666666


Q ss_pred             CCCCCCCcEEEEeCCCCcE-EEE------------EecCCceeEEEEeeC--ccEEE--eCCcEEEEEcCC---Ce----
Q 017642          150 DPQYPLNKVMIWDDHQSRC-IGE------------LSFRSEVRSVKLRRD--RIIVV--LEQKIFVYNFAD---LK----  205 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~-~~~------------~~~~~~v~~~~~~~~--~~~l~--~d~~i~vwd~~~---~~----  205 (368)
                      |     |.|..|+++.-.. ...            ......+++++|.+.  ..+++  .+|.|+.-+-..   ..    
T Consensus       314 D-----G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~  388 (555)
T KOG1587|consen  314 D-----GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY  388 (555)
T ss_pred             C-----CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc
Confidence            7     9999998764322 111            112346788888874  34444  578777644322   21    


Q ss_pred             -EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cceeeeeeccCcceEEEEECCCCC-EEEEEeCCCc
Q 017642          206 -LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGT  281 (368)
Q Consensus       206 -~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~  281 (368)
                       ....+..|.++|.++.++|-+..+++++ |  |.+++||...  ..++..+..+...+++++|||... .++++..||.
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             cccccccccCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence             2334556888999999999998877765 4  9999999876  355566777788899999999765 7888899999


Q ss_pred             EEEEEECCCC--ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          282 LVRIFNTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       282 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                       |.|||+...  +++...+.  +......+.|+++|+.|++|...|++++|++...-..
T Consensus       466 -l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~  521 (555)
T KOG1587|consen  466 -LDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAV  521 (555)
T ss_pred             -eehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCchhhc
Confidence             999999754  34444443  3456778889999999999999999999999755443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.71  E-value=9.8e-17  Score=145.74  Aligned_cols=243  Identities=12%  Similarity=0.186  Sum_probs=179.5

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..+|.++|+|+.|...|.++++|+ |.-++||..++..+.  ..+. +|...+..++.+.+...+++++.|     ..|+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS~D-----~vIr  257 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAASND-----KVIR  257 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcccC-----ceEE
Confidence            468999999999999999999999 555999998876665  5565 999999999999999999999988     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcC-CC-------------eEEEEEecc----------
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DL-------------KLLHQIETI----------  213 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~-~~-------------~~~~~~~~~----------  213 (368)
                      +|.+.++.++..+. |.+.|++++|+|-.  .. .||++++||.+ ..             ..+..+...          
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            99999999999888 99999999999954  11 68999999986 10             000000000          


Q ss_pred             ------CCCeeEEEEecCCCeEEEEeecC-----------CCCeEEEEecC-cceeeeeeccCcceEEEEECCCCC-EEE
Q 017642          214 ------ANPKGLCAVSQGVGSLVLVCPGL-----------QKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQ-LLA  274 (368)
Q Consensus       214 ------~~~v~~~~~~~~~~~~~l~~~g~-----------~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~-~l~  274 (368)
                            ......+++...  .+.++. ++           .+-.+.+|+.. +.....+.+|...+..+.++|-.. +..
T Consensus       336 ~d~ea~n~e~~~l~~~~~--~lif~t-~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSN--LLIFVT-RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             CCcccccchhhHhhhhcc--ceEEEe-ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence                  000011111111  111111 21           22333445433 445566778999999999999655 566


Q ss_pred             EEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +++.||. ..|||+-.|.+++.+..+  .+.+..-.||+||..++....-|.++|.....++..+
T Consensus       413 sag~dgs-t~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  413 SAGYDGS-TIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             hccCCCc-eEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence            8999999 999999999988877754  3567888999999999888888999998876666554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.70  E-value=5.9e-15  Score=123.61  Aligned_cols=201  Identities=13%  Similarity=0.166  Sum_probs=151.6

Q ss_pred             cCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCC-------cEEEEEe-cCCceeEEEEeeCccEEE----e
Q 017642          126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVV----L  192 (368)
Q Consensus       126 ~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~l~----~  192 (368)
                      .+|...++++.|+| +...+++|+.|     .+|.||.+..+       +++..+. |...|-.++|+|.-..++    .
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD-----~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~  152 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSED-----TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS  152 (472)
T ss_pred             cCccccccccccCccCCceeecCCCC-----ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence            38999999999998 56778899988     99999998654       4566666 999999999999654443    6


Q ss_pred             CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCc-ceEEEEECCCC
Q 017642          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDS-RIACFALTQDG  270 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~-~i~~v~~sp~g  270 (368)
                      |.+|.+||+.+|+.+.++. |.+.|.++.|+.||..  ++ +.+.|..|+||+... ..+..-.+|.+ .-..+.|-.+|
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~--l~-TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL--LC-TTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG  228 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCce--ee-eecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence            8999999999999988887 9999999999999985  33 356999999977655 45555557765 24456677788


Q ss_pred             CEEEEEeC---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCC
Q 017642          271 QLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (368)
Q Consensus       271 ~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~  336 (368)
                      .++-+|-.   +.. +-+||..+.+.-..+..-.....|.---|.+|.++++.++ .|+.||.|.+....
T Consensus       229 ~i~tTGfsr~seRq-~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQ-IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ceeeeccccccccc-eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            85555532   556 9999977654322332221345676667888888776555 79999999998765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=3.2e-15  Score=133.04  Aligned_cols=199  Identities=15%  Similarity=0.136  Sum_probs=122.0

Q ss_pred             CCCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC------------
Q 017642           74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN------------  140 (368)
Q Consensus        74 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  140 (368)
                      .....+...+|.+.|+|++|+.||+.+|+|+ |+.|.+|+-.- +..+  .+  .|...+.+|.|+|-            
T Consensus        42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~L--kY--SH~D~IQCMsFNP~~h~LasCsLsdF  116 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGIL--KY--SHNDAIQCMSFNPITHQLASCSLSDF  116 (1081)
T ss_pred             CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-ccee--ee--ccCCeeeEeecCchHHHhhhcchhhc
Confidence            3445566789999999999999999999999 88899998432 2221  12  34444455555554            


Q ss_pred             ---------------------------eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe----cCCceeEEEEeeCcc-
Q 017642          141 ---------------------------ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRI-  188 (368)
Q Consensus       141 ---------------------------~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~-  188 (368)
                                                 +.+++-|-.+     |+|.+-+ .+++....+.    ..++|++++|+|... 
T Consensus       117 glWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~n-----GTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~  190 (1081)
T KOG1538|consen  117 GLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFN-----GTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGE  190 (1081)
T ss_pred             cccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccC-----ceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence                                       4444444433     4444443 3333333332    233455555555431 


Q ss_pred             ----EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcce
Q 017642          189 ----IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (368)
Q Consensus       189 ----~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i  261 (368)
                          .++   .+.++..|.+ +|+.+..-+.-.-.-.|+.+.++|+++++   |+.|+.+.++.+.+-.+-++......|
T Consensus       191 G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~Li---GGsdk~L~~fTR~GvrLGTvg~~D~WI  266 (1081)
T KOG1538|consen  191 GRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILL---GGSDKQLSLFTRDGVRLGTVGEQDSWI  266 (1081)
T ss_pred             CccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEE---ccCCCceEEEeecCeEEeeccccceeE
Confidence                111   2333333333 22222211111112234556666665332   567889999888887777777788899


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          262 ACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       262 ~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      ..++..|++++++.|+.||+ |-.|++
T Consensus       267 WtV~~~PNsQ~v~~GCqDGT-iACyNl  292 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGCQDGT-IACYNL  292 (1081)
T ss_pred             EEEEEccCCceEEEEEccCe-eehhhh
Confidence            99999999999999999999 888776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=3.7e-15  Score=120.15  Aligned_cols=146  Identities=10%  Similarity=0.190  Sum_probs=108.0

Q ss_pred             EEEEeeCccEEE--e-----------CCcEEEEEcC-CCeEEEEEec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          180 SVKLRRDRIIVV--L-----------EQKIFVYNFA-DLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       180 ~~~~~~~~~~l~--~-----------d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      .+.|+++|.+++  .           -+...+|.++ .......+.. ..++|..++|+|+|+.++++. |..++.|.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEEE
Confidence            456667666655  1           1234444442 2233444433 345799999999999877665 7778899999


Q ss_pred             ecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      +.+...+..+.  ...+..|.|+|+|++|++++.   .|. |.+||+++.+.+..+.   |. .+..++|+|||++|+++
T Consensus        89 d~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   89 DVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLATA  161 (194)
T ss_pred             cCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEEEE
Confidence            98877776664  457789999999999998864   467 9999999888887765   32 47899999999999988


Q ss_pred             eC------CCeEEEEEcc
Q 017642          322 SD------KGTVHVFNLK  333 (368)
Q Consensus       322 s~------dg~i~iwd~~  333 (368)
                      ..      |+.++||++.
T Consensus       162 ~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EeccceeccccEEEEEec
Confidence            63      7889999995

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.69  E-value=3.8e-15  Score=129.37  Aligned_cols=240  Identities=11%  Similarity=0.152  Sum_probs=157.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc----eEEEcccCCceeEEEEEE---eCCeE-EEEecCCCCCCCCCcE
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI----FRRDFERGGGIGVVEMLF---RCNIL-ALVGGGPDPQYPLNKV  158 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~-~~~s~~~d~~~~~~~i  158 (368)
                      .+....++-.|++|+..-.+.+.+|+.......    ..+.+. ...-...++..   .+++. .+++-+.      |.|
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~t------Gqv  197 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTT------GQV  197 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeecc------Cce
Confidence            344555556677887766667888887642221    112221 22211222211   12232 2233222      889


Q ss_pred             EEEeCCCCcEEEEEe-----cCCceeEEEEeeC--ccEEE--eCCcEEEEEcCC--------------CeE---------
Q 017642          159 MIWDDHQSRCIGELS-----FRSEVRSVKLRRD--RIIVV--LEQKIFVYNFAD--------------LKL---------  206 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~l~--~d~~i~vwd~~~--------------~~~---------  206 (368)
                      .+.|....+..+.+.     .+..|+++.|-|.  +.+++  .+|.+++||.+-              +..         
T Consensus       198 q~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk  277 (636)
T KOG2394|consen  198 QLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK  277 (636)
T ss_pred             EEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence            888866533222221     4578999999984  45555  699999997632              111         


Q ss_pred             -----EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce-eeeeeccCcceEEEEECCCCCEEEEEeCCC
Q 017642          207 -----LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (368)
Q Consensus       207 -----~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg  280 (368)
                           +..+....+.+...+|++||++  ||+ -++||.+||++..... +..++..-+...|++|+|||+||++|++|.
T Consensus       278 ~~rNPv~~w~~~~g~in~f~FS~DG~~--LA~-VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  278 KTRNPVARWHIGEGSINEFAFSPDGKY--LAT-VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             ccCCccceeEeccccccceeEcCCCce--EEE-EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence                 1111122345677899999996  444 3589999997776644 445566778899999999999999999999


Q ss_pred             cEEEEEECCCCceeEeeEeccCcccEEEEEEec-------------------------------C----C----------
Q 017642          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-------------------------------N----A----------  315 (368)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp-------------------------------~----~----------  315 (368)
                      - |.||.+..++.+..-.+  |+..|..|+|.|                               +    +          
T Consensus       355 L-VtVwSf~erRVVARGqG--HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~  431 (636)
T KOG2394|consen  355 L-VTVWSFEERRVVARGQG--HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRIN  431 (636)
T ss_pred             e-EEEEEeccceEEEeccc--cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccccc
Confidence            9 99999999998877776  899999999982                               0    1          


Q ss_pred             ---CEEEEEeCCCeEEEEEccCCCCCC
Q 017642          316 ---QWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       316 ---~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                         -.+.+.+.|..+.+||+....-.+
T Consensus       432 ~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  432 SVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             ceEEEeecccccceEEEEecchhhccc
Confidence               146677899999999998765444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.3e-14  Score=133.08  Aligned_cols=237  Identities=14%  Similarity=0.150  Sum_probs=171.9

Q ss_pred             EEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe---EEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI---LALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        91 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      -.|++|+++++....+.|.||...++.+.  ..+. .+...+..+...+..   .++.++..+     |.|++||...++
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~~~   93 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSDGE   93 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEecC-----ccEEEecCCCcE
Confidence            46899999999999999999999887776  3454 777777777665432   455566666     999999999888


Q ss_pred             EEEEEecCCceeEEEE-----------------------------------------------------------eeCcc
Q 017642          168 CIGELSFRSEVRSVKL-----------------------------------------------------------RRDRI  188 (368)
Q Consensus       168 ~~~~~~~~~~v~~~~~-----------------------------------------------------------~~~~~  188 (368)
                      .++++....++..+.+                                                           ++.|.
T Consensus        94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge  173 (792)
T KOG1963|consen   94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE  173 (792)
T ss_pred             EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence            7776643222222222                                                           22222


Q ss_pred             EEE--eCCcEEEEEcCCCeEEEE---E-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-----ceeeeeecc
Q 017642          189 IVV--LEQKIFVYNFADLKLLHQ---I-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAH  257 (368)
Q Consensus       189 ~l~--~d~~i~vwd~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~  257 (368)
                      +..  .+..+++|+...+.....   . ..|...+++.+++|.++.  +|+ |..||+|.+|..-+     .....+.-|
T Consensus       174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAA-GDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEE-eccCCcEEEEeccccccccccceEEEec
Confidence            221  355677777765431110   0 124455788999999984  554 77899999986544     334456778


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ...|.+++|+++|.+|++|+..|. +-+|.+.+++ .+-+++  -.++|..+.+|||+.+.+....|+.|.+....+-..
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             ccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence            899999999999999999999999 9999999988 334444  567999999999999999999999999998866544


Q ss_pred             CCCCC
Q 017642          338 SARSE  342 (368)
Q Consensus       338 ~~~~~  342 (368)
                      ....+
T Consensus       327 k~tIs  331 (792)
T KOG1963|consen  327 KSTIS  331 (792)
T ss_pred             hhhcc
Confidence            43333

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=1.1e-13  Score=126.10  Aligned_cols=238  Identities=23%  Similarity=0.407  Sum_probs=181.3

Q ss_pred             CCEEEEEE-cCCCC-EEEEE-e-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCC-CCCCCCCcEE
Q 017642           86 PTLLHISF-NQDHG-CFAAG-T-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVM  159 (368)
Q Consensus        86 ~~v~~~~~-s~~g~-~l~~~-~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~~i~  159 (368)
                      ..+..+.+ ++++. +++.. . ++.+.+|+... ....  ..+. .|...+..+.+.+++..++.++. +     +.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~  181 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI--RTLE-GHSESVTSLAFSPDGKLLASGSSLD-----GTIK  181 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE--EEEe-cCcccEEEEEECCCCCEEEecCCCC-----CceE
Confidence            46777777 88887 44443 3 67799999876 3332  3333 67777889999999877777664 6     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeEEEEe
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +|++..+..+..+. |...|.+++|+|++. +++   .|+.|++||...+..+. .+..|.... ...|++++..  ++ 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~-  257 (466)
T COG2319         182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL--LA-  257 (466)
T ss_pred             EEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCE--EE-
Confidence            99999988888888 899999999999987 444   58999999998888877 577777665 4489999843  33 


Q ss_pred             ecCCCCeEEEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          234 PGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      +++.|+.+++|+.....  ...+..|...+.++.|+|++..+++++.|+. +++||..............|...+..+.|
T Consensus       258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEE
Confidence            36789999998776433  3444678899999999998888888999988 99999988877666651125667999999


Q ss_pred             ecCCCEEEEE-eCCCeEEEEEccCCC
Q 017642          312 SSNAQWLAVS-SDKGTVHVFNLKVNS  336 (368)
Q Consensus       312 sp~~~~l~s~-s~dg~i~iwd~~~~~  336 (368)
                      .+++..++.+ ..|+.+++|++....
T Consensus       337 ~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         337 SPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCCCEEEEeecCCCcEEeeecCCCc
Confidence            4333556555 678899999998876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.7e-13  Score=113.00  Aligned_cols=230  Identities=14%  Similarity=0.184  Sum_probs=165.5

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      .|.-+-|+.+  ++|..+ +..  +++++......++...+    ...++++..+.+.++++--        ..|+|||+
T Consensus        48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f----pt~IL~VrmNr~RLvV~Le--------e~IyIydI  113 (391)
T KOG2110|consen   48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFF----PTSILAVRMNRKRLVVCLE--------ESIYIYDI  113 (391)
T ss_pred             EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEec----CCceEEEEEccceEEEEEc--------ccEEEEec
Confidence            4555566544  666666 444  89999887777766555    3567788887777666553        56999999


Q ss_pred             CCCcEEEEEe----cCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          164 HQSRCIGELS----FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       164 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      ++.+.+.++.    +...+.++.++..+.+++     ..|.|.|||+.+.+.+..+..|.+.+.+++|+++|..  +|+ 
T Consensus       114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~l--lAT-  190 (391)
T KOG2110|consen  114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTL--LAT-  190 (391)
T ss_pred             ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCE--EEE-
Confidence            9999998886    344566777777778888     4689999999999999999999999999999999984  554 


Q ss_pred             cCCCCe-EEEE-ecCcceeeeeecc--CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc------------------
Q 017642          235 GLQKGQ-VRVE-HYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------------------  292 (368)
Q Consensus       235 g~~dg~-i~i~-~~~~~~~~~~~~~--~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~------------------  292 (368)
                      ++..|+ |||+ ..+++.+..++..  -..|.+++|++++.+|++.+..++ |+||.+....                  
T Consensus       191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~s  269 (391)
T KOG2110|consen  191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVS  269 (391)
T ss_pred             eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhh
Confidence            666776 5664 4555666666532  345889999999999999999999 9999885311                  


Q ss_pred             ---------e----------eEeeEeccCcccEEEEEEe--cCCCEEEEEeCCCeEEEEEccCC
Q 017642          293 ---------L----------LQEVRRGADRAEIYSLAFS--SNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       293 ---------~----------~~~~~~~~~~~~v~~l~~s--p~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                               .          ....+.. ..+.-..+.+.  +....+..++.||.++.|.+.-.
T Consensus       270 k~~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  270 KAATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             hhhhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence                     0          0000000 01111223333  46678889999999999998754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=9.9e-14  Score=109.30  Aligned_cols=226  Identities=13%  Similarity=0.182  Sum_probs=159.2

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC--------cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR--------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .|.+-+|+|.+++|++|. ++.|.+..++...        ......+ ..|...+..+.|..+.  +.++++      |.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d~~--Lls~gd------G~   82 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHDDF--LLSGGD------GL   82 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeehhh--eeeccC------ce
Confidence            455668999999999999 8889999885321        1111222 3888999999998443  344443      89


Q ss_pred             EEEEeCCCCcE------EEEEe--------cCCceeEEEEeeCcc-EEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEE
Q 017642          158 VMIWDDHQSRC------IGELS--------FRSEVRSVKLRRDRI-IVV--LEQKIFVYNFADLKLLHQIETIANPKGLC  220 (368)
Q Consensus       158 i~vwd~~~~~~------~~~~~--------~~~~v~~~~~~~~~~-~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  220 (368)
                      |+-|..+....      +.+.+        .--.|++|-..|... ++.  .|+.++.||+++|+..+++++|.+-+.++
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV  162 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence            99887654322      11111        123688888887543 333  79999999999999999999999999888


Q ss_pred             EEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeec---------cC-cceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA---------HD-SRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~---------~~-~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                      ........  +. +|++||++|+|+... +.+..+..         |. ..|.+++.  +..+|++|+.-.  +.+|.++
T Consensus       163 v~R~~~~q--il-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~--lslwhLr  235 (325)
T KOG0649|consen  163 VGRNANGQ--IL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK--LSLWHLR  235 (325)
T ss_pred             eecccCcc--ee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc--eeEEecc
Confidence            77333332  33 589999999988765 44444432         22 24666665  455888877554  8999999


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ..++...|.-   .+.+..+.|-.  ..+++++..+.|.-|.+.
T Consensus       236 sse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  236 SSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             CCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec
Confidence            9999988875   56789999965  367777777788888774

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.4e-15  Score=134.99  Aligned_cols=215  Identities=13%  Similarity=0.084  Sum_probs=141.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEec-CCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~  154 (368)
                      ....|...+.+.+|+|||+.|+..+ ++   .|++||+.+++......+. ++   .....|++++..++.+ ..+    
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~---~~~~~wSPDG~~La~~~~~~----  269 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GH---NGAPAFSPDGSRLAFASSKD----  269 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-Cc---cCceeECCCCCEEEEEEecC----
Confidence            3456777899999999999998876 32   3999999876544333332 22   2357888887655543 334    


Q ss_pred             CCc--EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCCC
Q 017642          155 LNK--VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       155 ~~~--i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                       |.  |++||+.+++......+...+....|+|||+.++    .++...||++.. +.....+ .+..  ....|+|+|+
T Consensus       270 -g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~  345 (429)
T PRK01742        270 -GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGK  345 (429)
T ss_pred             -CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCC
Confidence             55  5556776666544333667788999999998766    357778887643 2222333 2332  4578999999


Q ss_pred             eEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC--CCCceeEeeEeccCccc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT--LDGTLLQEVRRGADRAE  305 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~--~~~~~~~~~~~~~~~~~  305 (368)
                      .++++  + .++.+. |+........+..+ .....+.|+|||++|+.++.++. +.+|++  .+|+.++.+..  |.+.
T Consensus       346 ~ia~~--~-~~~i~~-~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~  417 (429)
T PRK01742        346 TLVMI--N-GDNVVK-QDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQ  417 (429)
T ss_pred             EEEEE--c-CCCEEE-EECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCC
Confidence            75443  2 355444 55444333333222 13456889999999999999998 888876  36777878875  6677


Q ss_pred             EEEEEEecC
Q 017642          306 IYSLAFSSN  314 (368)
Q Consensus       306 v~~l~~sp~  314 (368)
                      +...+|+|-
T Consensus       418 ~~~p~wsp~  426 (429)
T PRK01742        418 VKFPAWSPY  426 (429)
T ss_pred             CCCcccCCC
Confidence            889999984

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=1.7e-13  Score=121.26  Aligned_cols=222  Identities=10%  Similarity=0.086  Sum_probs=143.5

Q ss_pred             eCCeEEEEEecCC-CcceEEEcccCCceeEEEEEEeCCeEEEEe-cCCCCCCCCCcEEEEeCC-CCcE--EEEEecCCce
Q 017642          104 TDHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVG-GGPDPQYPLNKVMIWDDH-QSRC--IGELSFRSEV  178 (368)
Q Consensus       104 ~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~d~~~~~~~i~vwd~~-~~~~--~~~~~~~~~v  178 (368)
                      .+++|++|++.+. +......+.  .......+.+++++..++. +..+     +.|.+|++. +++.  +......+..
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCCc
Confidence            3888999999643 323334442  2234556677777665533 3334     889999986 3432  2333345567


Q ss_pred             eEEEEeeCccEEE----eCCcEEEEEcCC-Ce---EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-c
Q 017642          179 RSVKLRRDRIIVV----LEQKIFVYNFAD-LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-K  249 (368)
Q Consensus       179 ~~~~~~~~~~~l~----~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~  249 (368)
                      ..++++|++++++    .++.|.+|++.+ +.   .+..+.. ......++++|+++.++++  ...++.|.+|+.+. .
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~--~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVP--CLKEDRIRLFTLSDDG  159 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEe--eCCCCEEEEEEECCCC
Confidence            8899999998777    378999999963 32   2333322 2234567899999875544  45678999987754 2


Q ss_pred             eeee-----ee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCC--Cc--eeEeeEecc----CcccEEEEEEecC
Q 017642          250 RTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD--GT--LLQEVRRGA----DRAEIYSLAFSSN  314 (368)
Q Consensus       250 ~~~~-----~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~--~~--~~~~~~~~~----~~~~v~~l~~sp~  314 (368)
                      .+..     .. ........++|+|+|++|+++++ ++. |.+||+..  ++  .+..+....    +......+.|+|+
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            2210     11 11234678999999999988877 677 99999973  32  233332210    1112346889999


Q ss_pred             CCEEEEEe-CCCeEEEEEccCCC
Q 017642          315 AQWLAVSS-DKGTVHVFNLKVNS  336 (368)
Q Consensus       315 ~~~l~s~s-~dg~i~iwd~~~~~  336 (368)
                      |++|+++. .++.|.+|+++...
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCC
Confidence            99998885 47899999996543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.2e-13  Score=114.74  Aligned_cols=249  Identities=14%  Similarity=0.127  Sum_probs=166.1

Q ss_pred             ccccCCCCCEEEEEEcCC-CCEEEEEeCCeEEEEEecCCCcce----------EEEcccCCceeEEEEEEeCCeEEEEec
Q 017642           79 STSSSPPPTLLHISFNQD-HGCFAAGTDHGFRIYNCDPFREIF----------RRDFERGGGIGVVEMLFRCNILALVGG  147 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~d~~i~iw~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~  147 (368)
                      .+.......|+|++|-|. ++-|++|...+|.||..+......          ...+.+.+...|..|.|.+++..++++
T Consensus       134 ~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tA  213 (445)
T KOG2139|consen  134 KLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTA  213 (445)
T ss_pred             eecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeec
Confidence            344455668999999996 457889999999999875322111          112224556889999999999999887


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEE
Q 017642          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAV  222 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~  222 (368)
                      +-+    +..|.|||..++..+.... ..+.+.-+.|+||+.+++   .|+..++|+... ....+-. ...+.+...+|
T Consensus       214 S~g----sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacW  288 (445)
T KOG2139|consen  214 SFG----SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACW  288 (445)
T ss_pred             ccC----cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeee
Confidence            653    5889999999998776653 778899999999999887   599999996543 3333333 34458889999


Q ss_pred             ecCCCeEEEEeecCCCCeEE-E-EecCc---c------ee---eee------ec---cCcceEEEEECCCCCEEEEEeCC
Q 017642          223 SQGVGSLVLVCPGLQKGQVR-V-EHYAS---K------RT---KFI------MA---HDSRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~-i-~~~~~---~------~~---~~~------~~---~~~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      +|+|..+++++.|+  -.++ + .+...   .      .+   ..+      .+   -.+++.+++|+|.|.+||+.-..
T Consensus       289 spcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  289 SPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             cCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence            99999988887543  2222 1 11111   0      00   001      11   14578999999999999987654


Q ss_pred             Cc-------EEEEEECCCCceeEeeE-eccCcccEEEEEEec---CCCEEEEEeCCCeEEEEEccC
Q 017642          280 GT-------LVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       280 g~-------~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp---~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +.       .|.+||.+..-.+.-.. +.........++|+|   +|.+|..+=..|.|.-|++.-
T Consensus       367 ~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  367 QSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             CchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            42       16778876544432221 110111244566665   566776666778888887754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.8e-14  Score=131.54  Aligned_cols=209  Identities=14%  Similarity=0.068  Sum_probs=140.8

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (368)
                      .|.+||.+....   +.+. .+...+....|+|++..++..+.+.  .+..|++||+.+++........+....++|+||
T Consensus       185 ~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            488888765432   2232 5566788889999887666543220  014799999988865433334445567899999


Q ss_pred             ccEEE----eCCc--EEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cceeeeeeccC
Q 017642          187 RIIVV----LEQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHD  258 (368)
Q Consensus       187 ~~~l~----~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~~~~~  258 (368)
                      |+.++    .+|.  |++||+.+++. ..+..+...+....|+|||+.++++  +..+|...||..+  +.....+ .+.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~--s~~~g~~~I~~~~~~~~~~~~l-~~~  334 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFT--SDRSGSPQVYRMSASGGGASLV-GGR  334 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEE--ECCCCCceEEEEECCCCCeEEe-cCC
Confidence            98776    2565  45557766654 4455556667789999999975544  3456777776543  3333333 333


Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       259 ~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      .  .++.|+|||++|+.++.++  +.+||+.+++.......  .  ....+.|+|||++|+.++.++.+.+|++.
T Consensus       335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~--~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST--F--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC--C--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            3  4678999999998888765  66799988876532222  1  23568899999999999999988888874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.5e-13  Score=126.23  Aligned_cols=254  Identities=15%  Similarity=0.201  Sum_probs=164.9

Q ss_pred             CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      .........|.-.++|.++||.++++|+|. ||.|.+|.--. .......++-|=|...|.++.|+.++..+.+|+..  
T Consensus       195 ~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E--  272 (792)
T KOG1963|consen  195 TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE--  272 (792)
T ss_pred             eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc--
Confidence            344556667888899999999999999999 88899997432 12222222335688899999999999999999998  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-----------CCe
Q 017642          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-----------NPK  217 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-----------~~v  217 (368)
                         +.+.+|.+.+++ .+-+. -.+.|..+.++||+.+.+   .|+.|.+....+.....++.+..           +-.
T Consensus       273 ---~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~  348 (792)
T KOG1963|consen  273 ---GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT  348 (792)
T ss_pred             ---eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence               999999999998 33333 789999999999998776   79999998875543322222111           011


Q ss_pred             eEEEEecCCCe---------------------------------------------------EEEEee-------cCCCC
Q 017642          218 GLCAVSQGVGS---------------------------------------------------LVLVCP-------GLQKG  239 (368)
Q Consensus       218 ~~~~~~~~~~~---------------------------------------------------~~l~~~-------g~~dg  239 (368)
                      +.++++|..+.                                                   .++++.       ...||
T Consensus       349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~  428 (792)
T KOG1963|consen  349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG  428 (792)
T ss_pred             eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence            12222221110                                                   011110       11233


Q ss_pred             eEEE--EecCccee------eeeeccCcceEEEEECC-CCC-EEEEEeCCCcEEEEEECCCCcee--------EeeEecc
Q 017642          240 QVRV--EHYASKRT------KFIMAHDSRIACFALTQ-DGQ-LLATSSTKGTLVRIFNTLDGTLL--------QEVRRGA  301 (368)
Q Consensus       240 ~i~i--~~~~~~~~------~~~~~~~~~i~~v~~sp-~g~-~l~s~~~dg~~i~iwd~~~~~~~--------~~~~~~~  301 (368)
                      .+.+  |.......      .....|+..+...++.+ ... ..++++.||. ++||-+...+.+        ....+..
T Consensus       429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~-~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGD-FKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCe-EEEEEEecccccCcCccceEEeeeecc
Confidence            3333  54443211      11235666555555543 333 7899999999 999988332111        1122223


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      |..++.+++|+.||..|+. +.|++|.+||..+..
T Consensus       508 ~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~  541 (792)
T KOG1963|consen  508 HKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKN  541 (792)
T ss_pred             ccCcccchhhcCCCcEEEE-ecCCEEEEecCCChh
Confidence            6778999999999976655 578899999999853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=6.1e-16  Score=131.99  Aligned_cols=196  Identities=15%  Similarity=0.196  Sum_probs=169.4

Q ss_pred             eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE
Q 017642          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL  207 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~  207 (368)
                      .+-+.+.+..++..++-++..     |.|-.+|..+++...++.....|.++.|..+..+++  ....++||| ..|..+
T Consensus       130 FGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtEl  203 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTEL  203 (545)
T ss_pred             cCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEE
Confidence            345678888999988888877     999999999999999999999999999999988887  578999999 568778


Q ss_pred             EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      +.++.+ ..+..+.|-|..  ++|+ +++..|.++. +...++.+..+....+.+..++-+|-...+-+|..+|+ |.+|
T Consensus       204 HClk~~-~~v~rLeFLPyH--fLL~-~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlW  278 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYH--FLLV-AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLW  278 (545)
T ss_pred             eehhhc-Cchhhhcccchh--heee-ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEec
Confidence            887654 467778888865  3444 4778999988 77777888888888889999999999999999999999 9999


Q ss_pred             ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .-...+++..+..  |.++|.+|++.++|+++++.+.|..++|||++.-.+.
T Consensus       279 SP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  279 SPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             CCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            9999998888777  8999999999999999999999999999999987643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.6e-13  Score=106.96  Aligned_cols=230  Identities=16%  Similarity=0.230  Sum_probs=151.1

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc------eEEEcc-cC---CceeEEEEEEe--CCeEEEEecCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI------FRRDFE-RG---GGIGVVEMLFR--CNILALVGGGP  149 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~------~~~~~~-~~---~~~~~~~~~~~--~~~~~~~s~~~  149 (368)
                      ..|+++|+.++|.  ..+|++|+|+.|+=|.+....+.      .+.... +.   .--.+.+|..+  .+.+++++  .
T Consensus        59 qahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--G  134 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--G  134 (325)
T ss_pred             cccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec--C
Confidence            6899999999998  45888888988999988644331      111110 01   11234455554  44555555  3


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEE-eeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCC--------e
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKL-RRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP--------K  217 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~-~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~--------v  217 (368)
                      |     +.++-||+++|+..++++ |.+.|.++.- +.++.++.  .||++++||.+++++++.+.....+        -
T Consensus       135 D-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~  209 (325)
T KOG0649|consen  135 D-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK  209 (325)
T ss_pred             C-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence            3     999999999999999999 9999999998 56677776  7999999999999998888543221        1


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ...++.-+.+  .++| | ....+.+|.........+..-...+..+.|.  ...++++++.+. |.-|.+ +|......
T Consensus       210 wigala~~ed--WlvC-G-gGp~lslwhLrsse~t~vfpipa~v~~v~F~--~d~vl~~G~g~~-v~~~~l-~Gvl~a~i  281 (325)
T KOG0649|consen  210 WIGALAVNED--WLVC-G-GGPKLSLWHLRSSESTCVFPIPARVHLVDFV--DDCVLIGGEGNH-VQSYTL-NGVLQANI  281 (325)
T ss_pred             eeEEEeccCc--eEEe-c-CCCceeEEeccCCCceEEEecccceeEeeee--cceEEEeccccc-eeeeee-ccEEEEec
Confidence            1123333444  4666 3 3567888887764444444445567778885  346777887777 999975 55555555


Q ss_pred             EeccCcccEEEEEEecCC-CEEEEEeCCCeEEEE
Q 017642          298 RRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVF  330 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iw  330 (368)
                      ...  ....++..|+-.- ++|-.++....+.|+
T Consensus       282 p~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  282 PVE--STACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cCC--ccceeeecccCCceEEEEecccceeeeee
Confidence            543  2345666665433 344455666667665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.63  E-value=2.6e-14  Score=117.17  Aligned_cols=162  Identities=19%  Similarity=0.249  Sum_probs=126.3

Q ss_pred             cCCceeEEEEee----C-ccEEE--eCCcEEEEEcCC-C--eEEEEEe--ccCCCeeEEEEecCCC--eEEEEeecCCCC
Q 017642          174 FRSEVRSVKLRR----D-RIIVV--LEQKIFVYNFAD-L--KLLHQIE--TIANPKGLCAVSQGVG--SLVLVCPGLQKG  239 (368)
Q Consensus       174 ~~~~v~~~~~~~----~-~~~l~--~d~~i~vwd~~~-~--~~~~~~~--~~~~~v~~~~~~~~~~--~~~l~~~g~~dg  239 (368)
                      |..+|.+++|++    + -..++  ....+.+|.... +  +.++.+.  .+......++|+-+..  ..++|+ |+.-|
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-~G~~G  115 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-GGYLG  115 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe-eccee
Confidence            678899999984    2 23334  466888888743 3  3344442  2445566788876654  356666 44899


Q ss_pred             eEEE-EecCcceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCC
Q 017642          240 QVRV-EHYASKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       240 ~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~  316 (368)
                      .|+| +....+....+.+|...|+.+.++|+. ++|++++.|.. ||+|++++..++..|-+. .|...|.++.|+.+|.
T Consensus       116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd  194 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD  194 (385)
T ss_pred             EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence            9999 666677788899999999999999976 58999999999 999999999999877542 2788999999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCCC
Q 017642          317 WLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ++++++.|.+|++|++..++-
T Consensus       195 ~i~ScGmDhslk~W~l~~~~f  215 (385)
T KOG1034|consen  195 RIASCGMDHSLKLWRLNVKEF  215 (385)
T ss_pred             eeeccCCcceEEEEecChhHH
Confidence            999999999999999986543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=5.4e-14  Score=128.27  Aligned_cols=223  Identities=15%  Similarity=0.101  Sum_probs=157.8

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCCcE--EE-----EEecCCce
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRC--IG-----ELSFRSEV  178 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~~~--~~-----~~~~~~~v  178 (368)
                      .+.||++... ......+  .....+.++.|++.. ..+++|..+     |+|.+||++.+..  ..     .-.|...+
T Consensus       223 ~~~vW~~~~p-~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  223 VLLVWSLKNP-NTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             eEEEEecCCC-CCceEEE--ecCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            4889999765 3333444  567778888888744 455666666     9999999987654  22     22388999


Q ss_pred             eEEEEeeCccE--EE---eCCcEEEEEcCCCeE------EEEEe------ccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642          179 RSVKLRRDRII--VV---LEQKIFVYNFADLKL------LHQIE------TIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       179 ~~~~~~~~~~~--l~---~d~~i~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i  241 (368)
                      ..+.|..+..-  ++   .||.|..|+++....      .....      .....++++.|.+.....+++  |+.+|.|
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v  372 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKV  372 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEE
Confidence            99999875332  33   799999999865322      11111      122356778898877766654  6789999


Q ss_pred             EE-EecCc--ce------eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC-CCceeEeeEeccCcccEEEEEE
Q 017642          242 RV-EHYAS--KR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       242 ~i-~~~~~--~~------~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      .- .....  ..      ...+..|.++|+++.++|-+..++..+.|.+ |+||... ...++..+..  +...|++++|
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaW  449 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAW  449 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEE
Confidence            87 33222  22      2345678899999999998875555445888 9999987 6677777766  5567999999


Q ss_pred             ecCCC-EEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          312 SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       312 sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      ||-.. .++++..||.|.|||+......+...
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s  481 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS  481 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence            99764 67778889999999998887776544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=5.2e-13  Score=121.71  Aligned_cols=213  Identities=11%  Similarity=0.054  Sum_probs=140.2

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (368)
                      |.+||.+.....   .+. .+...+....|+|++..++......  .+..|++||+.+++........+.+..+.|+|||
T Consensus       181 l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        181 LRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             EEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            677776543332   121 4455677888988876655322100  0157999999888755444455566788999999


Q ss_pred             cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--EecCcceeeeeeccCc
Q 017642          188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDS  259 (368)
Q Consensus       188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~  259 (368)
                      +.++    .++  .|++||+.+++..+.. .+...+....|+|||+.++++.  ..++...|  ++..+.....+..+..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCCCeEEeecCCC
Confidence            9877    133  5999999888665433 3344567789999999755543  33444455  4445544555554455


Q ss_pred             ceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe---EEEEEcc
Q 017642          260 RIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT---VHVFNLK  333 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~---i~iwd~~  333 (368)
                      ......|+|||++|+..+.+   .. |.+||+.+++.. .+...   .......|+|||++|+.++.++.   +.+++++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            56778999999988876543   24 888999888644 34321   22456789999999998887764   6777774


Q ss_pred             C
Q 017642          334 V  334 (368)
Q Consensus       334 ~  334 (368)
                      .
T Consensus       407 G  407 (429)
T PRK03629        407 G  407 (429)
T ss_pred             C
Confidence            3

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=6.8e-14  Score=130.67  Aligned_cols=243  Identities=16%  Similarity=0.242  Sum_probs=163.7

Q ss_pred             CCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEecCCC---cceEEEc---c---cCCceeEEEEEEeC-CeEEEEecCCC
Q 017642           84 PPPTLLHISFNQ--DHGCFAAGT-DHGFRIYNCDPFR---EIFRRDF---E---RGGGIGVVEMLFRC-NILALVGGGPD  150 (368)
Q Consensus        84 h~~~v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~~---~~~~~~~---~---~~~~~~~~~~~~~~-~~~~~~s~~~d  150 (368)
                      ....|+.+.+-.  |..++.+|+ |+.|+||+--...   ..+...+   .   ......-.-+.|.. .+..+++|+- 
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~- 1186 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV- 1186 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-
Confidence            445778877743  445777787 8889999743221   1111111   0   01111112334433 4555555543 


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCe---EEEEEeccCCC--eeE
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLK---LLHQIETIANP--KGL  219 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~---~~~~~~~~~~~--v~~  219 (368)
                           ..|+|||......+..+.  ....|+++.-+- .|..++   .||.|++||.+...   .+...+.|...  |..
T Consensus      1187 -----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1187 -----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             -----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence                 799999999888888876  445566665443 345555   79999999997542   45566677776  888


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCcceee---eeeccC--c-ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHD--S-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~~~~--~-~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                      +.+.+.|-.- ++ +|+.+|.|++|+.......   .+..|.  + ..+++..+++..++|+|+. +. |+||++ .|+.
T Consensus      1262 ~slq~~G~~e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~ 1336 (1387)
T KOG1517|consen 1262 LSLQRQGLGE-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQ 1336 (1387)
T ss_pred             EEeecCCCcc-ee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhh
Confidence            8888877652 33 4889999999888773222   233333  3 5899999999999999998 77 999997 4554


Q ss_pred             eEeeEe-----ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          294 LQEVRR-----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       294 ~~~~~~-----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +..++.     +...+.+.+++|+|..-+||+|+.|.+|.||..++++.
T Consensus      1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence            444442     11345789999999999999999999999999876543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.3e-14  Score=122.66  Aligned_cols=189  Identities=16%  Similarity=0.181  Sum_probs=141.7

Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        89 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      .+++|+.+|..|++|+ |+.+|||++........  .. .|...|-++.|++++.++++-+.|      ..+||+++++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--e~-~~~~eV~DL~FS~dgk~lasig~d------~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--EI-AHHAEVKDLDFSPDGKFLASIGAD------SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--hH-hhcCccccceeCCCCcEEEEecCC------ceEEEEeccCc
Confidence            7899999999999998 99999999876555432  22 788899999999999999998873      89999999997


Q ss_pred             EEEEEe---cCCceeEEEEeeCc-----cEEE---eCCcEEEEEcCCCeE-----EEEEeccCCCeeEEEEecCCCeEEE
Q 017642          168 CIGELS---FRSEVRSVKLRRDR-----IIVV---LEQKIFVYNFADLKL-----LHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       168 ~~~~~~---~~~~v~~~~~~~~~-----~~l~---~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      .+.+..   .+.....+.|+.|+     ++++   -.+.|+.||+.....     .+........+.+++++.+|+.  +
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~  296 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--L  296 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--E
Confidence            776665   34456777888876     2223   245677776632111     1111123447889999999995  4


Q ss_pred             EeecCCCCeEEEE-ecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          232 VCPGLQKGQVRVE-HYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       232 ~~~g~~dg~i~i~-~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      +. |+.||.|.|+ ..+.+.++.. +.|...|+.+.|+||.+++++.+.+.. +.|..+.-
T Consensus       297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            44 7789999994 4444555544 579999999999999999999988888 88887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6.8e-13  Score=121.58  Aligned_cols=218  Identities=12%  Similarity=0.055  Sum_probs=144.3

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (368)
                      |.++|.+....   +.+. .+...+....|++++..++..+...  .+..|++||+.+++......+.+.+...+|+|||
T Consensus       184 l~~~d~dg~~~---~~lt-~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        184 LAIMDQDGANV---RYLT-DGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEECCCCCCc---EEEe-cCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            66666543322   2232 4556788888988876655432210  1268999999988765443467778899999999


Q ss_pred             cEEE----eC--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcce
Q 017642          188 IIVV----LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI  261 (368)
Q Consensus       188 ~~l~----~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i  261 (368)
                      +.++    .+  ..|++||+.+++.. .+..+........|+|||+.++++........|++++..+.....+..+...+
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            8765    23  45888899877654 44445555667899999998665542222335666776666666665555567


Q ss_pred             EEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC------CeEEEEEc
Q 017642          262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------GTVHVFNL  332 (368)
Q Consensus       262 ~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------g~i~iwd~  332 (368)
                      ....|+|||++|+....++   . |.+||+..+.. ..+..   ...+..+.|+|||+.|+..+.+      ..|+++|+
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            7789999999888766432   4 88899765543 34432   2246788999999988765542      25778887


Q ss_pred             cCCCC
Q 017642          333 KVNSG  337 (368)
Q Consensus       333 ~~~~~  337 (368)
                      ..+..
T Consensus       412 ~g~~~  416 (435)
T PRK05137        412 TGRNE  416 (435)
T ss_pred             CCCce
Confidence            65544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=8.2e-15  Score=120.15  Aligned_cols=220  Identities=15%  Similarity=0.104  Sum_probs=150.8

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcE
Q 017642           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      -++|||+|+++|+..+..+.|-|.++.+....  +.  --..+.-+.|..+..++ +....+     +.|.+|++...+-
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~ql--f~--cldki~yieW~ads~~ilC~~yk~-----~~vqvwsl~Qpew   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQL--FL--CLDKIVYIEWKADSCHILCVAYKD-----PKVQVWSLVQPEW   83 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHH--HH--HHHHhhheeeeccceeeeeeeecc-----ceEEEEEeeccee
Confidence            35899999999999988888888877665322  21  11223344454444443 334444     8999999999998


Q ss_pred             EEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642          169 IGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (368)
Q Consensus       169 ~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i  243 (368)
                      ...+. ...++..++|+|||+.+.    .+-.|.+|.+.+.+... ++-....+..++|++||+...++.  -.|..=++
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~s--RrDCkdyv  160 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILS--RRDCKDYV  160 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeee--cccHHHHH
Confidence            88888 788999999999998777    47899999998876543 333445568899999999766543  22322111


Q ss_pred             --E-ecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEE
Q 017642          244 --E-HYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       244 --~-~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                        . -.....++.+....-..+.+.|+|||..||          |||.--.-.+..+..   .-.+..+.|+|.+++|+.
T Consensus       161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la----------Vwd~~Leykv~aYe~---~lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA----------VWDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HHHhhHHHHHHHhcCCCcccccCceECCCCcEEE----------Eecchhhheeeeeee---ccceeEEEeccccceEEe
Confidence              1 111233445555566788999999997654          555322222333432   246899999999999999


Q ss_pred             EeCCCeEEEEEccC
Q 017642          321 SSDKGTVHVFNLKV  334 (368)
Q Consensus       321 ~s~dg~i~iwd~~~  334 (368)
                      |+.|+.+||.+--+
T Consensus       228 GsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFT  241 (447)
T ss_pred             eccchhhhhhceee
Confidence            99999998865433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=3.3e-13  Score=118.17  Aligned_cols=114  Identities=9%  Similarity=0.196  Sum_probs=93.8

Q ss_pred             cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECC
Q 017642          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTL  289 (368)
Q Consensus       213 ~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~  289 (368)
                      ..++|.++.|++++..+.+++ |.+--.+.|++.++..+..+.  .++=+++-|+|.|++|+.++-   .|. |.|||+.
T Consensus       269 k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~  344 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVP  344 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEecc
Confidence            467899999999999888777 888899999998888877664  445678999999998887765   467 9999999


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEEEEeC------CCeEEEEEccC
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKV  334 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~  334 (368)
                      +.+++..+...    .-+-+.|+|||+++++++.      |+.++||++.-
T Consensus       345 n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  345 NRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             chhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            98888887752    3466899999999998864      67899999853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=5e-14  Score=116.07  Aligned_cols=178  Identities=15%  Similarity=0.250  Sum_probs=129.3

Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeC----ccEEE-eCCcEEEEEcCCCeEEEEEe--ccC-CCeeEEEEecCC
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD----RIIVV-LEQKIFVYNFADLKLLHQIE--TIA-NPKGLCAVSQGV  226 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~----~~~l~-~d~~i~vwd~~~~~~~~~~~--~~~-~~v~~~~~~~~~  226 (368)
                      |.|++||..+++.+..++ +...+..++|..+    +.+.+ .||+|++||++.......+.  .+. .+..+++....+
T Consensus        50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~  129 (376)
T KOG1188|consen   50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK  129 (376)
T ss_pred             CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence            999999999999999999 8888888888763    33333 79999999998876554443  232 234444443333


Q ss_pred             CeEEEEeecC----CCCeEEEEecCcce--ee-eeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCc----ee
Q 017642          227 GSLVLVCPGL----QKGQVRVEHYASKR--TK-FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGT----LL  294 (368)
Q Consensus       227 ~~~~l~~~g~----~dg~i~i~~~~~~~--~~-~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~----~~  294 (368)
                      +  ++++ |.    .+-.+.+|+.+...  +. -...|...|+++.|+|.. ++|++|+.||- |.|||+....    ++
T Consensus       130 ~--ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  130 N--IIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALL  205 (376)
T ss_pred             C--eEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHH
Confidence            3  4554 53    24566778876533  33 356899999999999965 59999999999 9999987542    23


Q ss_pred             EeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          295 QEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       295 ~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ..+.   +...|..+.|..++ +.|.+-+..++..+|+++.+....-
T Consensus       206 ~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  206 HVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             Hhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            3333   56679999999877 4577778889999999999875443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=2.1e-13  Score=114.36  Aligned_cols=243  Identities=15%  Similarity=0.145  Sum_probs=171.5

Q ss_pred             CCCCEEEEEEcCCCC--EEEEEe-CCeEEEEEecCCCcceEE----EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           84 PPPTLLHISFNQDHG--CFAAGT-DHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        84 h~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ....|..++|.-+++  .|.... +..+..+.+......-..    .. +.....+..+......+.++..+       |
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc~~s-------G  125 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITCVSS-------G  125 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEEecC-------C
Confidence            345788888876654  455443 556777766544433211    11 24455666666665555555443       8


Q ss_pred             cEEEEeCCCC----cEEEEEecCCceeEEEEeeCccEEE-e---C--CcEEEEEcCCCeEEEEEeccCC---------Ce
Q 017642          157 KVMIWDDHQS----RCIGELSFRSEVRSVKLRRDRIIVV-L---E--QKIFVYNFADLKLLHQIETIAN---------PK  217 (368)
Q Consensus       157 ~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~-~---d--~~i~vwd~~~~~~~~~~~~~~~---------~v  217 (368)
                      .+.+|..+.+    ..+..+.....+..|.-.+....++ .   .  ..+.+||++..+.+..-+...+         .+
T Consensus       126 ~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~  205 (412)
T KOG3881|consen  126 NLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWI  205 (412)
T ss_pred             cEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeee
Confidence            9999998754    3445555567788888777666555 2   2  4689999988765544332111         23


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (368)
                      +.+.|-+......+++ +..-+++++|+...  +++..+.-.+.+|+++...|+|+++++|...|. +..||++.++...
T Consensus       206 tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLG  283 (412)
T ss_pred             ccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeec
Confidence            4566766533333443 56789999977654  566777777889999999999999999999999 9999999999887


Q ss_pred             e-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          296 E-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       296 ~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      . +.+  -.+.|.+|..+|.+++|++++-|+.|||+|+++.+..
T Consensus       284 ~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  284 CGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             cccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            7 554  5789999999999999999999999999999985543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.3e-13  Score=123.00  Aligned_cols=221  Identities=13%  Similarity=0.061  Sum_probs=144.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEec-CCCCCCCC
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPL  155 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~  155 (368)
                      ...+...+.+.+|+|||+.|+..+    +..+.+|++.+++......+.    .......|+|++..++.. ..+   ..
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~---g~  266 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKT---GS  266 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC----CCcCCeEECCCCCEEEEEEcCC---CC
Confidence            344566899999999999998754    234889998776543322232    223356788887655532 222   01


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--CC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ..|++||+.+++......+...+....|+|||+.++  .  ++  .|+++|+.+++.. .+...........|+|||+.+
T Consensus       267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEE
Confidence            369999998887655544566788999999999776  3  23  4666677666543 333333445568899999986


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeEeccCcccEE
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                      +++........|.+++........+... .......|+|||++|+.++.++.  .+.++++ +|+....+..  |.+.+.
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~  421 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVK  421 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcC
Confidence            5543212223566677665555555432 22456789999999998887764  2567776 5666667765  667788


Q ss_pred             EEEEec
Q 017642          308 SLAFSS  313 (368)
Q Consensus       308 ~l~~sp  313 (368)
                      ..+|+|
T Consensus       422 ~p~Wsp  427 (429)
T PRK03629        422 FPAWSP  427 (429)
T ss_pred             CcccCC
Confidence            899987

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=2.3e-13  Score=111.29  Aligned_cols=221  Identities=14%  Similarity=0.085  Sum_probs=160.5

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC-cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      -..+|+|.+|++|+..+|++. .+.|.||.....+ -....++. .|...+..+.|.+....+++++.|     ..-++|
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw   82 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVW   82 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC-----CCcccc
Confidence            356899999999999999999 5569999988766 44445665 788889999999999999999988     999999


Q ss_pred             eC-CCCc--EEEEE-ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE----EEEeccCCCeeEEEEecCCCeEE
Q 017642          162 DD-HQSR--CIGEL-SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       162 d~-~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      .. ..++  +...+ ++...++++.|+|.+..++   ....|.||-++...--    +.-+.+...|.+++|+|++-  +
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--L  160 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--L  160 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--e
Confidence            98 4443  33333 4899999999999988777   3457788877543321    11123456788899998873  3


Q ss_pred             EEeecCCCCeEEEEecCc-------------------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Q 017642          231 LVCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~-------------------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (368)
                      ++ .|+.|+..+++..--                   ..+..+....+.+..+.|+|+|..|+-.+.|.. +.+-|....
T Consensus       161 la-aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p  238 (361)
T KOG1523|consen  161 LA-AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGP  238 (361)
T ss_pred             ec-ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCC
Confidence            44 489999999843211                   112223345678999999999999999999999 999987655


Q ss_pred             c-eeEeeEeccCcccEEEEEEecCCC
Q 017642          292 T-LLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       292 ~-~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      . .+..+..  ..-+..++.|-.+..
T Consensus       239 ~~~v~~~~~--~~lP~ls~~~ise~~  262 (361)
T KOG1523|consen  239 SERVQSVAT--AQLPLLSVSWISENS  262 (361)
T ss_pred             chhccchhh--ccCCceeeEeecCCc
Confidence            4 3334433  225677777755433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3e-13  Score=123.80  Aligned_cols=214  Identities=10%  Similarity=0.090  Sum_probs=139.1

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (368)
                      |.+||.+....   +.+. .+...+....|++++..++..+.+.  ....|++||+.+++........+.....+|+|||
T Consensus       186 l~i~D~~g~~~---~~lt-~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        186 LQVADSDGYNP---QTIL-RSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEECCCCCCc---eEee-cCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            77787653322   2232 4555677888888876655543220  0157999999888765443355566688999999


Q ss_pred             cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe--EEEEecCcceeeeeeccCc
Q 017642          188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDS  259 (368)
Q Consensus       188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~  259 (368)
                      +.++    .++  .|++||+.+++.. .+..+.......+|+|||+.+++..  ..+|.  |++++........+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence            8765    233  6999999888654 3444444456789999999755543  34444  4445544444444443444


Q ss_pred             ceEEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC---CeEEEEEcc
Q 017642          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK  333 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~  333 (368)
                      ....++|+|||++|+..+.++   . |.+||+.+++.. .+..   ........|+|||++|+..+.+   +.|+++++.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            455789999999888765433   5 899999887755 4432   2234567999999988776643   357788875


Q ss_pred             CC
Q 017642          334 VN  335 (368)
Q Consensus       334 ~~  335 (368)
                      .+
T Consensus       412 g~  413 (433)
T PRK04922        412 GR  413 (433)
T ss_pred             CC
Confidence            43

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.4e-13  Score=124.40  Aligned_cols=179  Identities=14%  Similarity=0.076  Sum_probs=123.2

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ..|.+||...+.......+...+...+|+|||+.++  .    +..|++||+.+++... +....+......|+|||+.+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            469999975444433334777899999999998877  2    2469999998876543 33334445578999999986


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CCc-EEEEEECCCCceeEeeEeccCcccEE
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                      +++.+...+..|++++........+..+......++|+|||+.|+.++. +|. .|.++|+.+++.. .+..  +.....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~--~g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF--QGNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec--CCCCcc
Confidence            6554332234677788777666677666666678999999998887764 333 1666677666643 3322  223445


Q ss_pred             EEEEecCCCEEEEEeCCC---eEEEEEccCCCCC
Q 017642          308 SLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGS  338 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~  338 (368)
                      .++|+|||++|+..+.++   .|++||+.+++..
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            789999999988765433   6999999776543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3e-13  Score=118.72  Aligned_cols=242  Identities=13%  Similarity=0.227  Sum_probs=174.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEE-Ee-CCeEEEEEecCCCcceEEEcccCCce-----------------------------
Q 017642           82 SSPPPTLLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGI-----------------------------  130 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~-~~-d~~i~iw~~~~~~~~~~~~~~~~~~~-----------------------------  130 (368)
                      -.|+..-+.|..+|||+|+.+ |. .-.|++||+......+.+.+. ...+                             
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD-ae~V~feiLsDD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD-AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc-ccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence            356677788999999998855 44 455999999877666555543 1110                             


Q ss_pred             --------eEEEEEEe-CC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcE
Q 017642          131 --------GVVEMLFR-CN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKI  196 (368)
Q Consensus       131 --------~~~~~~~~-~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i  196 (368)
                              ...++.++ ++ .+++++.+       ..|+-++++.|..+..+. ..+.++++..++-..+++   .+|.|
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeecC-------cceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence                    01122222 11 23333333       579999999999999998 568999999999877777   58999


Q ss_pred             EEEEcCCCeEEEEEec------cCC-----CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccC--cceEE
Q 017642          197 FVYNFADLKLLHQIET------IAN-----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--SRIAC  263 (368)
Q Consensus       197 ~vwd~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~--~~i~~  263 (368)
                      ..||.++...+..+..      +.+     .|+++.|+.+|  +-+++ |..+|.+.|++...........|.  -+|..
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~  276 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG--LHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKK  276 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCc--eeEEe-eccCCcEEEEEcccCCceeecccCCccceee
Confidence            9999988776665542      222     37788888775  44665 889999999887776665666654  47889


Q ss_pred             EEECCC--CCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          264 FALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       264 v~~sp~--g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +.|.+.  +..|++.. ... ++|||-.+|+....+..   ...+..+++-|++.++.++-+++.+..|=+..-.+.|
T Consensus       277 l~~~~~~~q~~v~S~D-k~~-~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP  349 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVSMD-KRI-LKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP  349 (703)
T ss_pred             ecccccCCCceEEecc-hHH-hhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence            999775  33555443 334 99999999998877774   4569999999999999999999888888777665554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=4.8e-13  Score=111.24  Aligned_cols=238  Identities=18%  Similarity=0.193  Sum_probs=155.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~v  160 (368)
                      -.+-.+..++|++.-..+|++. |..|++|+-.. ...  ..+++.....+.+++|.|... .++.+..      +.|.+
T Consensus        96 ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~p--t~Lks~sQrnvtclawRPlsaselavgCr------~gIci  166 (445)
T KOG2139|consen   96 WSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCP--TKLKSVSQRNVTCLAWRPLSASELAVGCR------AGICI  166 (445)
T ss_pred             hhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCC--ceecchhhcceeEEEeccCCcceeeeeec------ceeEE
Confidence            3455788999999766777777 88999999665 222  223334556677888876432 3333333      67999


Q ss_pred             EeCCCC----c--------EEEEEe--cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEE
Q 017642          161 WDDHQS----R--------CIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAV  222 (368)
Q Consensus       161 wd~~~~----~--------~~~~~~--~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  222 (368)
                      |.....    .        +...++  ....|++|.|++||..++    .|..|.|||..++.++.......+.+.-+.|
T Consensus       167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW  246 (445)
T ss_pred             EEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence            975421    1        112233  346899999999999988    5889999999998877666455677888999


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-Cc--------
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-GT--------  292 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-~~--------  292 (368)
                      +||++.++.+   .-|+..++|.... -.........+.|....|+|+|++|+.+....  -++|.+.- ++        
T Consensus       247 SPdgd~lfaA---t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  247 SPDGDVLFAA---TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             cCCCCEEEEe---cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcc
Confidence            9999975533   3699999995443 22222223344899999999999665544433  24554421 00        


Q ss_pred             ------eeEeeE-----ec--cCcccEEEEEEecCCCEEEEEeCCC--------eEEEEEccC
Q 017642          293 ------LLQEVR-----RG--ADRAEIYSLAFSSNAQWLAVSSDKG--------TVHVFNLKV  334 (368)
Q Consensus       293 ------~~~~~~-----~~--~~~~~v~~l~~sp~~~~l~s~s~dg--------~i~iwd~~~  334 (368)
                            .+..+.     .+  .-.+.+.+++|.|.|.+||+.-..+        .|.+||.+.
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence                  011111     00  0135789999999999999875433        356676654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3.7e-13  Score=125.86  Aligned_cols=241  Identities=16%  Similarity=0.185  Sum_probs=157.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      .-..+.|+|-...+++++|+ .|+|||.+.++..............|..+.+-  .+...+.+++.|     |.|+||+-
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIRIwk~ 1140 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIRIWKD 1140 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-----ceEEEecc
Confidence            34567888888889988844 59999998766542211111233445555553  345556666666     99999973


Q ss_pred             C-C----CcEEEEEe--------cCCceeEEEEeeC-ccEEEe--CCcEEEEEcCCCeEEEEEecc-CCCeeEEEEecCC
Q 017642          164 H-Q----SRCIGELS--------FRSEVRSVKLRRD-RIIVVL--EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGV  226 (368)
Q Consensus       164 ~-~----~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~--d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~  226 (368)
                      - +    .+.+..+.        ..+.-.-+.|... |.+++.  -..|+|||....+++..+... ...++++.-.-..
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            2 2    22332221        1111234556664 444442  358999999887777766432 2334444333333


Q ss_pred             CeEEEEeecCCCCeEEEEecCcc----eeeeeeccCcc--eEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          227 GSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~~--i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      .. ++++ |..||.|+++|....    .+...+.|...  |..+.+.+.|- .|++|+.||. |++||++.......+..
T Consensus      1221 gn-~i~A-GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1221 GN-IIAA-GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             Cc-eEEE-eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCccccccee
Confidence            22 3443 889999999887653    45567788877  99999998776 5999999999 99999987432222221


Q ss_pred             ccCc--c-cEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          300 GADR--A-EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       300 ~~~~--~-~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..|.  + .++++..+++...+|+|+. +.|+||++.-.+
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence            1122  3 5899999999999999988 899999997543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.56  E-value=3.4e-13  Score=110.31  Aligned_cols=199  Identities=17%  Similarity=0.153  Sum_probs=155.3

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC---cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEE
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYN  200 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd  200 (368)
                      ....+.+.+|+.+...++.+-..     ..|.||.....   +..++++ |...|++++|+|....++   .|..-+||.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~-----~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNN-----HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCC-----ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            34568899999998888887765     78999986654   4677777 999999999999987666   699999999


Q ss_pred             cC-CC--eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee-----eeeccCcceEEEEECCCCCE
Q 017642          201 FA-DL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDGQL  272 (368)
Q Consensus       201 ~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-----~~~~~~~~i~~v~~sp~g~~  272 (368)
                      .. .+  +....+..+....+++.|+|.++.+  ++ |+.-..|.|+..+.+.--     .-+.+...|+++.|+|++-+
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkF--AV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKF--AV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceE--Ee-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            84 33  3344455677889999999999863  33 666788888666654432     23456778999999999999


Q ss_pred             EEEEeCCCcEEEEEECC-----C-------------CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          273 LATSSTKGTLVRIFNTL-----D-------------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       273 l~s~~~dg~~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      |++|+.|+. .|||..-     .             |+++.++..  ..+.|..+.|+|+|..|+-.+.|..+.+-|...
T Consensus       161 laaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  161 LAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             ecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            999999999 9998641     1             234444432  467899999999999999999999999999877


Q ss_pred             CCC
Q 017642          335 NSG  337 (368)
Q Consensus       335 ~~~  337 (368)
                      +.+
T Consensus       238 p~~  240 (361)
T KOG1523|consen  238 PSE  240 (361)
T ss_pred             Cch
Confidence            754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=7.6e-15  Score=133.68  Aligned_cols=201  Identities=14%  Similarity=0.219  Sum_probs=157.6

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~  202 (368)
                      +|...|.|..|+..+..++++++|     ..++||..+++.++.... |.+.|+.++.+.++.+++   .|..|++|-+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            788899999999999999999998     999999999999999998 999999999999988887   58889999999


Q ss_pred             CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeee----------------------------
Q 017642          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----------------------------  254 (368)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~----------------------------  254 (368)
                      ++.++..+.+|.+.|++++|+|-.       +.+.||++++|+.....+...                            
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            999999999999999999999975       245799999988773221110                            


Q ss_pred             ---eccCcceEEEEECCCCCEEEE-----------EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEE
Q 017642          255 ---MAHDSRIACFALTQDGQLLAT-----------SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLA  319 (368)
Q Consensus       255 ---~~~~~~i~~v~~sp~g~~l~s-----------~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~  319 (368)
                         ......+.+++|...+-.+++           +-.+-. +++|++.+|...+.+.+  |...+..+.++|-.. ...
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCCCcHhhh
Confidence               000011222333333223333           333444 88899999988888887  677889999999554 556


Q ss_pred             EEeCCCeEEEEEccCCCCCCCCC
Q 017642          320 VSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       320 s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      +++.||.+.|||+-.+.+++...
T Consensus       413 sag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             hccCCCceEeeecccCCcceeee
Confidence            88999999999999988776544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.1e-12  Score=119.61  Aligned_cols=174  Identities=15%  Similarity=0.101  Sum_probs=118.3

Q ss_pred             CcEEEEeCCCCcEEEEE-ecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      ..|.++|.. +.....+ .+...+.+.+|+|||+.++  .    ...|++||+.+++... +....+......|+|||+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            578888864 4443344 4778899999999998887  2    2369999998887543 3333445567899999998


Q ss_pred             EEEEeecCCCCeEEEEe--cCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEEC--CCCceeEeeEeccCc
Q 017642          229 LVLVCPGLQKGQVRVEH--YASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNT--LDGTLLQEVRRGADR  303 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~--~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~--~~~~~~~~~~~~~~~  303 (368)
                      +++..  +.+|...||.  ..+.....+..+........|+|||+.|+..+. +|. ..||.+  .+++.. .+..  ..
T Consensus       254 la~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~-~lt~--~g  327 (427)
T PRK02889        254 LAVAL--SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQ-RVTF--TG  327 (427)
T ss_pred             EEEEE--ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceE-EEec--CC
Confidence            65543  4567666644  444555666666666677899999998876654 455 666654  444432 2222  22


Q ss_pred             ccEEEEEEecCCCEEEEEeCCC---eEEEEEccCCCC
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSG  337 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~  337 (368)
                      .......|+|||++|+..+.++   .|++||+.+++.
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            2345678999999998776554   699999987654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.55  E-value=6.5e-14  Score=124.22  Aligned_cols=177  Identities=12%  Similarity=0.133  Sum_probs=135.7

Q ss_pred             CcEEEEeCCCCc-----EEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCC-------eEEEEEeccCCCeeE
Q 017642          156 NKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL-------KLLHQIETIANPKGL  219 (368)
Q Consensus       156 ~~i~vwd~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~  219 (368)
                      |.|-||+++...     .+-.+.....|+++.|.| |...++   .||.|++|.+..+       .....+..|...|..
T Consensus       603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s  682 (1012)
T KOG1445|consen  603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS  682 (1012)
T ss_pred             ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence            899999987532     233444677899999999 444443   7999999999653       345567789999999


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEee
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEV  297 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~  297 (368)
                      +.|+|-...+ |++ ++.|-+|++|+... .....+.+|.+.|..++|+|||+.+|+.+.||+ |+||+-++++. +++-
T Consensus       683 lRfHPLAadv-La~-asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg  759 (1012)
T KOG1445|consen  683 LRFHPLAADV-LAV-ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG  759 (1012)
T ss_pred             EEecchhhhH-hhh-hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence            9999976653 343 67899999988765 555678999999999999999999999999999 99999887653 3333


Q ss_pred             EeccCcccEEEEEEecCCCEEEEEeCC----CeEEEEEccCCC
Q 017642          298 RRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS  336 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~  336 (368)
                      ++. -...-..|.|.-||+++++.+.|    +.|.+||.++-.
T Consensus       760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            322 22344678899999999887765    458889887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.5e-12  Score=116.45  Aligned_cols=196  Identities=13%  Similarity=0.107  Sum_probs=125.9

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCc--EEEEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQK--IFVYN  200 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~--i~vwd  200 (368)
                      .+...+....|+|++..++..+.+.  ....|++||+.+++........+.+...+|+|||+.++    .++.  |+++|
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            4455677888988886655433210  01469999999887654433556677899999998776    3555  45555


Q ss_pred             cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec--CcceeeeeeccCcceEEEEECCCCCEEEEEeC
Q 017642          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                      +..++ .+.+..+........|+|||+.++++.  ..+|...+|..  .+.....+..+.......+|+|||++|+..+.
T Consensus       271 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        271 ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            55444 444544444556688999999865543  34455555443  33333333323333456889999999887765


Q ss_pred             CC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC---eEEEEEc
Q 017642          279 KG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNL  332 (368)
Q Consensus       279 dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~  332 (368)
                      ++   . |.+||+.+++.. .+..   ........|+|||+.|+.++.++   .+++.++
T Consensus       348 ~~g~~~-I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        348 VGGAFK-LYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             cCCcEE-EEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            54   5 999999888754 3332   12346789999999988776443   3555555

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.55  E-value=2.8e-14  Score=124.07  Aligned_cols=157  Identities=16%  Similarity=0.213  Sum_probs=127.5

Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |.+.+.+ +.++....+. |.+.+.+-.|++||.-++   .||.|++|. ++|-+..++.....+|.|++|.|+.+.+++
T Consensus        85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   85 GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence            8898888 6677777777 999999999999998777   699999999 567665566556778999999999987443


Q ss_pred             EeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          232 VCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       232 ~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                       |   ..+.+.| -......+...++|.+-|.++.|++...++++|++|-. .+||| ..|..+..-..  |..+|++++
T Consensus       163 -c---~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD-~~G~~Lf~S~~--~ey~ITSva  234 (737)
T KOG1524|consen  163 -C---QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWD-AQGANLFTSAA--EEYAITSVA  234 (737)
T ss_pred             -e---cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeec-ccCcccccCCh--hccceeeee
Confidence             3   3577888 33444556678999999999999999999999999999 99999 46676655555  778999999


Q ss_pred             EecCCCEEEEEeC
Q 017642          311 FSSNAQWLAVSSD  323 (368)
Q Consensus       311 ~sp~~~~l~s~s~  323 (368)
                      |.|+ +.++.++.
T Consensus       235 ~npd-~~~~v~S~  246 (737)
T KOG1524|consen  235 FNPE-KDYLLWSY  246 (737)
T ss_pred             eccc-cceeeeee
Confidence            9999 66666654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.55  E-value=6.5e-14  Score=117.84  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=130.4

Q ss_pred             cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCe---------EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642          174 FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLK---------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       174 ~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                      ...+|..+.|.++.. .++   .|..|++|-++.+.         .+..+..|...|+++.|+|+|+  ++| +|+.+|.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLA-Sg~D~g~   88 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLA-SGGDGGE   88 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eee-ecCCCce
Confidence            456788889988766 666   58899999985421         2345567899999999999998  355 4888999


Q ss_pred             EEEEecC--------c---------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc
Q 017642          241 VRVEHYA--------S---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (368)
Q Consensus       241 i~i~~~~--------~---------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (368)
                      +.+|...        .         ...+.+.+|...|..++|+|++.++++++.|.. +++||+..|+....+..  |.
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G~l~~~~~d--h~  165 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAGQLLAILDD--HE  165 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccceeEeeccc--cc
Confidence            9999766        1         123456789999999999999999999999999 99999999999988887  77


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ..+..++|.|-++++++-+.|...+++.+...+..
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~  200 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI  200 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeeeeeeeee
Confidence            89999999999999999998887777776655443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=8.1e-14  Score=121.28  Aligned_cols=184  Identities=15%  Similarity=0.217  Sum_probs=126.6

Q ss_pred             CcEEEEeCCCCc----EEEEEe-cCCceeEEEEe-----eCcc-EEE--eCCcEEEEEcCCCeEEEEEe----ccCCCee
Q 017642          156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLR-----RDRI-IVV--LEQKIFVYNFADLKLLHQIE----TIANPKG  218 (368)
Q Consensus       156 ~~i~vwd~~~~~----~~~~~~-~~~~v~~~~~~-----~~~~-~l~--~d~~i~vwd~~~~~~~~~~~----~~~~~v~  218 (368)
                      ..+++|+.+.+.    .+.... ......+-+|+     +.+. +++  .-|.|.+.|....+..+.+.    .....++
T Consensus       144 ~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT  223 (636)
T KOG2394|consen  144 RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVT  223 (636)
T ss_pred             CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceE
Confidence            578999877432    221111 22233344442     2232 333  56888888875532222111    1236789


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecCc-----------------------------ceeeeeeccCcceEEEEECCC
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----------------------------KRTKFIMAHDSRIACFALTQD  269 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-----------------------------~~~~~~~~~~~~i~~v~~sp~  269 (368)
                      ++.|-+.++.+++++  -.+|.+++++...                             .++..+.--.+.|...+|+||
T Consensus       224 ~ikWvpg~~~~Fl~a--~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D  301 (636)
T KOG2394|consen  224 CIKWVPGSDSLFLVA--HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD  301 (636)
T ss_pred             EEEEEeCCCceEEEE--EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence            999999998877764  4678888864321                             111112223447888999999


Q ss_pred             CCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      |++||+.+.||. +||||..+.+++..++.  .-+...|++|||||++|++|++|.-|.||.+..++-...-+++
T Consensus       302 G~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  302 GKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             CceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence            999999999999 99999999888877765  5678999999999999999999999999999988877665555

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.4e-13  Score=120.41  Aligned_cols=210  Identities=15%  Similarity=0.158  Sum_probs=151.8

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc--------ceEEEcccCCceeEEEEEEeCCeEEEEecCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--------IFRRDFERGGGIGVVEMLFRCNILALVGGGP  149 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  149 (368)
                      -..+.|.++|.|+++.+++..+.+|+ |+.|+.|++.....        .+...+. +|...++.++++.....+++++.
T Consensus       338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~  416 (577)
T KOG0642|consen  338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSS  416 (577)
T ss_pred             EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecC
Confidence            45679999999999999999999999 99999997642211        2223343 88889999999998888999988


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCc-cEEEeCCcEEEEE---cCCCeEEEEEecc-------CC
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDR-IIVVLEQKIFVYN---FADLKLLHQIETI-------AN  215 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~d~~i~vwd---~~~~~~~~~~~~~-------~~  215 (368)
                      |     |++++|+...... .++.   ..+.-..+.+-... ...+.+.....++   ++....+..+...       ..
T Consensus       417 D-----gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~  490 (577)
T KOG0642|consen  417 D-----GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP  490 (577)
T ss_pred             C-----ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence            8     9999999776655 4443   23334455554433 1222344444333   3334333333211       13


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                      .+..+..+|....   ..++..|+.|++ +...+..+....+|...++++++.|+|-+|++++.|+. +++|.+....++
T Consensus       491 ~in~vVs~~~~~~---~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~  566 (577)
T KOG0642|consen  491 QINKVVSHPTADI---TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCV  566 (577)
T ss_pred             ccceEEecCCCCe---eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchhee
Confidence            4556777887763   224678999999 66777888889999999999999999999999999999 999999887777


Q ss_pred             EeeEe
Q 017642          295 QEVRR  299 (368)
Q Consensus       295 ~~~~~  299 (368)
                      .....
T Consensus       567 ~es~~  571 (577)
T KOG0642|consen  567 LESTA  571 (577)
T ss_pred             ecccc
Confidence            66654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3e-12  Score=117.36  Aligned_cols=174  Identities=11%  Similarity=0.083  Sum_probs=124.4

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ..|.++|...........+...+...+|+|||+.++  .    +..|++||+.+++.. .+....+.+....|+|||+.+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            589999975544433334788999999999999877  1    458999999888653 344455566788999999986


Q ss_pred             EEEeecCCCCe--EEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CC--cEEEEEECCCCceeEeeEeccCcc
Q 017642          230 VLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG--TLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       230 ~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg--~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      ++..  +.++.  |++++..+.....+..+........|+|||+.|+..+. +|  . |++||+..++.. .+..  +.+
T Consensus       261 a~~~--~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~  334 (435)
T PRK05137        261 VMSL--SQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGG  334 (435)
T ss_pred             EEEE--ecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCC
Confidence            6544  34444  66667766666777777767778999999998887664 33  5 888887766544 4433  234


Q ss_pred             cEEEEEEecCCCEEEEEeCC---CeEEEEEccCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNS  336 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~  336 (368)
                      .+....|+|||+.|+..+.+   ..|.+||+..+.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence            56778999999999876543   358888875543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.3e-12  Score=105.30  Aligned_cols=135  Identities=17%  Similarity=0.235  Sum_probs=96.2

Q ss_pred             cEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      .|..++... ..+..+.  ..+.|.+++|+|++..++     .++.|.+||++ ++.+..+.  ...+..+.|+|+|+.+
T Consensus        40 ~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   40 ELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFL  115 (194)
T ss_pred             EEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEE
Confidence            344444333 3444444  456799999999998765     35689999996 66666664  4567889999999987


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC------CCcEEEEEECCCCceeEeeE
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~------dg~~i~iwd~~~~~~~~~~~  298 (368)
                      +++..|...|.+.+|+...........|. .++.++|+|||++|+++..      |.. ++||+. .|+.+.+..
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~~  187 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKKP  187 (194)
T ss_pred             EEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEecc
Confidence            66544556788999988754433333343 4789999999999998874      566 999997 577665543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=1.8e-10  Score=102.27  Aligned_cols=239  Identities=19%  Similarity=0.202  Sum_probs=150.9

Q ss_pred             CEEEEEEcCCCCEEEEEeC-----CeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           87 TLLHISFNQDHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d-----~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ....++++|++++|.+..+     +.|..|+++..  ......... .....-..+..++++.+++.+..    .+|.|.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany----~~g~v~  112 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANY----GGGSVS  112 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEET----TTTEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEc----cCCeEE
Confidence            4566789999999988873     35999998875  332222332 23334456777777665555432    139999


Q ss_pred             EEeCCC-CcEEEE---Eec-----------CCceeEEEEeeCccEEE----eCCcEEEEEcCCCe--E--EEEEe-ccCC
Q 017642          160 IWDDHQ-SRCIGE---LSF-----------RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK--L--LHQIE-TIAN  215 (368)
Q Consensus       160 vwd~~~-~~~~~~---~~~-----------~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~--~--~~~~~-~~~~  215 (368)
                      ++++.. +.....   +.+           .....++.++|++++++    ....|++|++....  .  ...+. ....
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            999987 433322   211           34578999999999877    35689999996644  3  22222 2233


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cce---eeeeec------cCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKR---TKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~---~~~~~~------~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      .-..++|+|+++.++++.  ..++.|.++...  ...   +..+..      .......|+++|||++|+++......|.
T Consensus       193 GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            456799999999877764  467888885444  222   222211      1125788999999998888775443399


Q ss_pred             EEECC--CCce--eEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccC
Q 017642          285 IFNTL--DGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (368)
Q Consensus       285 iwd~~--~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~  334 (368)
                      +|++.  +++.  +..+..  .......++++|+|++|+++. .++.|.+|+++.
T Consensus       271 vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            99993  3333  333333  233579999999999998887 567899998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.5e-13  Score=118.61  Aligned_cols=211  Identities=13%  Similarity=0.136  Sum_probs=143.9

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYP  154 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~  154 (368)
                      .....+|.+-|+|+.|+.+|.+|++|+|. .+.|||.-..+..  ..+..+|...|.+..|-|  +...++++..|    
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv~sgAgD----  116 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIVLSGAGD----  116 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCCeEEEeccCc----
Confidence            34567999999999999999999999955 4999997644444  333347888888888865  56677777777    


Q ss_pred             CCcEEEEeCCCC----------cEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-E------E---EE
Q 017642          155 LNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-L------L---HQ  209 (368)
Q Consensus       155 ~~~i~vwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-~------~---~~  209 (368)
                       ..|+++|+...          +....+. |...|..++..|++-..+    .||+|+-+|++... +      .   ..
T Consensus       117 -k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  117 -KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             -ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence             99999998741          2334445 888999999999874333    69999999997631 1      1   11


Q ss_pred             EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------------------ceeeee-eccC-----------
Q 017642          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------------------KRTKFI-MAHD-----------  258 (368)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------------------~~~~~~-~~~~-----------  258 (368)
                      +....-...++.++|...+ +++. |+.|-..++++...                   +++..+ .+|-           
T Consensus       196 y~~~lielk~ltisp~rp~-~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPY-YLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             hchhhheeeeeeecCCCCc-eEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence            1112224567899998876 4454 66788888866221                   011111 1121           


Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       259 ~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      ..++-+.|+|+|.-|+..-.... |+++|+..++....+.
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKSPTPYF  312 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCCceeec
Confidence            12566889999985544333334 9999999887765554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.8e-13  Score=116.87  Aligned_cols=207  Identities=14%  Similarity=0.204  Sum_probs=151.3

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeC--ccEEE---eCC
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQ  194 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~---~d~  194 (368)
                      ..+. +|...|.++.|+.++.++++|++|     -.+.|||.-..+.+..+.  |...|.++.|-|.  .++++   .|.
T Consensus        44 ~eL~-GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   44 AELT-GHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhc-cccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            4454 899999999999999999999998     999999999889988887  9999999999983  45555   689


Q ss_pred             cEEEEEcCCC----------eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee--------e---
Q 017642          195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--------F---  253 (368)
Q Consensus       195 ~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--------~---  253 (368)
                      .|+++|+...          +....+..|...|..++..|++.+.+..  +++||+++-++.......        .   
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws--asEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS--ASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE--ecCCcceeeecccCCccCCccccccHHHHH
Confidence            9999999741          2344456678888889999999765553  569999999665441111        0   


Q ss_pred             eeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC--------C----------ceeEeeEeccCc-----------
Q 017642          254 IMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD--------G----------TLLQEVRRGADR-----------  303 (368)
Q Consensus       254 ~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~--------~----------~~~~~~~~~~~~-----------  303 (368)
                      +...--...|+.++|... +|++|+.|-. .++||.+.        +          .++..|..+ |-           
T Consensus       196 y~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~-hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG-HLKNSQGNLDRYI  273 (758)
T ss_pred             hchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCc-cccCcccccccce
Confidence            111223567899999665 8999999998 99999431        1          123222221 11           


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ..++-++|+|+|.-|++.-....|+++|+..++..
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            12567889999986655544557999999887654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=6.8e-11  Score=97.02  Aligned_cols=209  Identities=15%  Similarity=0.198  Sum_probs=145.0

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC-CCcEEEEEe---cCCceeEEE
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELS---FRSEVRSVK  182 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~-~~~~~~~~~---~~~~v~~~~  182 (368)
                      .|.|||=  .+.....++  .-...|.++....+.++++--        +.|+||... +-+.++.+.   ......+++
T Consensus        76 kviIWDD--~k~~~i~el--~f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   76 KVIIWDD--LKERCIIEL--SFNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             eEEEEec--ccCcEEEEE--EeccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            3899993  333333444  345678888999998888874        789999987 445666655   344555555


Q ss_pred             EeeCccEEE----eCCcEEEEEcCCCeE--EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe-EEEEe-cCcceeeee
Q 017642          183 LRRDRIIVV----LEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ-VRVEH-YASKRTKFI  254 (368)
Q Consensus       183 ~~~~~~~l~----~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~-i~i~~-~~~~~~~~~  254 (368)
                      -..+..+++    .-|.|.|-|+...+.  ...+..|...|.+++++.+|.  ++|+ ++..|+ ||||+ .++..+..+
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vAT-aStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVAT-ASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEE-eccCcEEEEEEEcCCCcEeeee
Confidence            555566666    368999999976554  467889999999999999997  3554 566665 67755 556677776


Q ss_pred             ec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe------------------------eEeccCcccEEE
Q 017642          255 MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE------------------------VRRGADRAEIYS  308 (368)
Q Consensus       255 ~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~------------------------~~~~~~~~~v~~  308 (368)
                      +.  ....|.+|+|+|++.+||++++.|+ |+||.++....-..                        +..  ..+...-
T Consensus       221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l--~~~~~~~  297 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL--PQGTQCI  297 (346)
T ss_pred             ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEc--cCCCcEE
Confidence            53  3457999999999999999999999 99998875321111                        111  2234555


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ++|..+.+.++..+.||.-+-+.+.
T Consensus       298 ~~fg~~~nsvi~i~~Dgsy~k~~f~  322 (346)
T KOG2111|consen  298 IAFGSETNTVIAICADGSYYKFKFD  322 (346)
T ss_pred             EEecCCCCeEEEEEeCCcEEEEEec
Confidence            6777665666666778876555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=1.9e-11  Score=111.88  Aligned_cols=212  Identities=12%  Similarity=0.103  Sum_probs=137.8

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (368)
                      |.++|.+....   +.+. .+...+....|++++..++....+.  ....|++||+.+++......+.+.+.+++|+||+
T Consensus       172 l~~~d~~g~~~---~~l~-~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       172 LQVADYDGANP---QTIT-RSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             EEEEcCCCCCC---EEee-cCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            66666543222   2222 3444567778888877665543220  0157999999988765554566677789999999


Q ss_pred             cEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC--eEEEEecCcceeeeeeccCc
Q 017642          188 IIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS  259 (368)
Q Consensus       188 ~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~  259 (368)
                      +.++  .    +..|++||+.+++.. .+..+........|+++++.+++..  ..++  .|++++..+.....+..+..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s--~~~g~~~iy~~d~~~~~~~~l~~~~~  322 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS--DRGGSPQIYMMDADGGEVRRLTFRGG  322 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCEEEeecCCC
Confidence            8665  1    236999999877543 3333444445678999998765543  2333  56666665555555655666


Q ss_pred             ceEEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC---eEEEEEcc
Q 017642          260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNLK  333 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~~  333 (368)
                      .+..+.|+|+|++|+.++.++   . |.+||+.++... .+..   ........|+|||++|+..+.++   .+++.+..
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~---~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTD---TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccC---CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            778889999999998887765   6 899998876543 3332   12345668999999888776543   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.47  E-value=3.2e-11  Score=114.87  Aligned_cols=251  Identities=12%  Similarity=0.082  Sum_probs=160.1

Q ss_pred             cccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcc---eE--EEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI---FR--RDFERGGGIGVVEMLFRCNILALVGGGPD  150 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  150 (368)
                      ......|...|..++.++.. .++++|+ |++|++|++......   ..  .++. .....+..+...+++..++.++.|
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCC
Confidence            34456788888898887655 8999999 888999998643322   11  1221 233344444444555555555776


Q ss_pred             CCCCCCcEEEEeCCCCc-------EEEEEe--cCCceeEE-EEeeC-cc-EEE---eCCcEEEEEcCCCeEEEEEe--cc
Q 017642          151 PQYPLNKVMIWDDHQSR-------CIGELS--FRSEVRSV-KLRRD-RI-IVV---LEQKIFVYNFADLKLLHQIE--TI  213 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~-------~~~~~~--~~~~v~~~-~~~~~-~~-~l~---~d~~i~vwd~~~~~~~~~~~--~~  213 (368)
                           |.|++.++...+       ..+...  ..+.+..| ++... +. .++   ..+.|..||++.......++  ..
T Consensus      1120 -----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1120 -----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             -----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence                 999999987621       111111  33444444 33332 22 233   47899999998776555543  34


Q ss_pred             CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee-ee-eccCcceEEEEECCCC---CEEEEEeC--CCcEEEEE
Q 017642          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDG---QLLATSST--KGTLVRIF  286 (368)
Q Consensus       214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~-~~~~~~i~~v~~sp~g---~~l~s~~~--dg~~i~iw  286 (368)
                      .+.|++++.++.+..+++   |...|.+.+||..-+... .+ ..+..+|+.+..+|-.   ...++++.  .+. |.+|
T Consensus      1195 hG~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTW 1270 (1431)
T ss_pred             ccceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeee
Confidence            567899999999985433   777899999998875433 22 2455788888887743   34444443  556 9999


Q ss_pred             ECCCCceeEeeEec-----------------cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          287 NTLDGTLLQEVRRG-----------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       287 d~~~~~~~~~~~~~-----------------~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ++.+|.+...+...                 .+.-......+...+..+.+|+.|..|+.||...++..
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            99998777666542                 01111222333344568889999999999999888766

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1.8e-10  Score=102.28  Aligned_cols=236  Identities=14%  Similarity=0.161  Sum_probs=141.9

Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC-CCCCCCCCcEEEEeCCCC
Q 017642           89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        89 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~~~i~vwd~~~~  166 (368)
                      ..+.|+|||+++.+++ |+.|.++|+.+.+..  ..+.  .......+++++++.+++.++ ..     +.+.++|.++.
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~--~G~~~~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tl  110 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIK--VGGNPRGIAVSPDGKYVYVANYEP-----GTVSVIDAETL  110 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE---SSEEEEEEE--TTTEEEEEEEET-----TEEEEEETTT-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEe--cCCCcceEEEcCCCCEEEEEecCC-----CceeEeccccc
Confidence            3467999999998888 888999999887755  4442  233456677777776555443 33     89999999999


Q ss_pred             cEEEEEec--------CCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEE--EEEeccCCCeeEEEEecCCCeEEEE
Q 017642          167 RCIGELSF--------RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       167 ~~~~~~~~--------~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +.++.+..        ...+.++..++.+. +++   ..+.|.+.|..+.+.+  ..+. .........|.+++++++++
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEE
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeec
Confidence            99998862        23567887888777 444   2478888898765433  2333 23344567899999886665


Q ss_pred             eecCCCCeEEEEecCc-c-------------------------------------------------------eeeeeec
Q 017642          233 CPGLQKGQVRVEHYAS-K-------------------------------------------------------RTKFIMA  256 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~-~-------------------------------------------------------~~~~~~~  256 (368)
                      ..+  +..|.+.+... +                                                       .++.+..
T Consensus       190 ~~~--sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~  267 (369)
T PF02239_consen  190 ANG--SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT  267 (369)
T ss_dssp             EGG--GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred             ccc--cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence            422  23444422221 1                                                       1111222


Q ss_pred             cCcceEEEEECCCCCEEEEE----eCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe--CCCeEEEE
Q 017642          257 HDSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVF  330 (368)
Q Consensus       257 ~~~~i~~v~~sp~g~~l~s~----~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~dg~i~iw  330 (368)
                      ...+ ..+..+|+++++.+.    ...+. |.|+|.++.+.+..+.... ...+..+.|++||+.+..+.  .++.|.||
T Consensus       268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~  344 (369)
T PF02239_consen  268 QGGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVY  344 (369)
T ss_dssp             SSSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred             CCCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence            2222 456779999999888    34466 9999999998887776432 23489999999999766554  34479999


Q ss_pred             EccCCCCCC
Q 017642          331 NLKVNSGSA  339 (368)
Q Consensus       331 d~~~~~~~~  339 (368)
                      |..+.+...
T Consensus       345 D~~Tl~~~~  353 (369)
T PF02239_consen  345 DAKTLKEKK  353 (369)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCcEEEE
Confidence            999887654

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=9.8e-13  Score=113.35  Aligned_cols=246  Identities=13%  Similarity=0.106  Sum_probs=163.8

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~  156 (368)
                      ....|.+-|..|.|+..|..|++|+ |..|.+||+........  +..+|...+....|-|  +..-+++++.|     |
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~d-----g  209 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRD-----G  209 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceecccc-----C
Confidence            4567999999999999999999999 66799999988776644  3336666666655544  44566777776     8


Q ss_pred             cEEEEeCC-CCcEE---EEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeE----------------------
Q 017642          157 KVMIWDDH-QSRCI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKL----------------------  206 (368)
Q Consensus       157 ~i~vwd~~-~~~~~---~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~----------------------  206 (368)
                      .+++=.+. ++.+.   +..+|.+.|..++.-|+..+-+    .|+.+.-+|++.+..                      
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            88776643 23222   1122666666666555432222    233333333322110                      


Q ss_pred             ---------------------------------EEEE------eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          207 ---------------------------------LHQI------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       207 ---------------------------------~~~~------~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                                                       +..+      ......|++++|+.++..++.++   .|-.|+++...
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~  366 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKS  366 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccc
Confidence                                             0111      01123467888887777655443   57777775433


Q ss_pred             cc-------------eeee-eeccCc--ceEEEEE-CCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          248 SK-------------RTKF-IMAHDS--RIACFAL-TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       248 ~~-------------~~~~-~~~~~~--~i~~v~~-sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      ..             .++. +++|..  .|..+-| -|...|+++|+.-|. |.||+-.+++.++.+.+..  .-|+||.
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t~eii~~MegDr--~VVNCLE  443 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKTGEIIRFMEGDR--HVVNCLE  443 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce-EEEEecchhHHHHHhhccc--ceEeccC
Confidence            21             1222 677764  3666655 567789999999999 9999999999998888743  4899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      -+|--.+||+.+-|..|+||--.+.+..
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~~er~  471 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLTAERA  471 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCccccc
Confidence            9999999999999999999987554443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=7.5e-10  Score=92.87  Aligned_cols=248  Identities=15%  Similarity=0.135  Sum_probs=165.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      ..+.+.++-|+|+|++++|.++.    +++|.-|.++..  ...+..... .....-..++.+.++.+++++..    ..
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY----~~  110 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANY----HS  110 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEc----cC
Confidence            35566788999999999998776    344888888764  332222211 11222256777777766666543    34


Q ss_pred             CcEEEEeCCC-Cc---EEEEEecCCc----------eeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEe---ccC
Q 017642          156 NKVMIWDDHQ-SR---CIGELSFRSE----------VRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIE---TIA  214 (368)
Q Consensus       156 ~~i~vwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~---~~~  214 (368)
                      |.|.++-++. |.   .+..+.|.+.          +....+.|++++++    .-.+|.+|++..|++...-.   ...
T Consensus       111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G  190 (346)
T COG2706         111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG  190 (346)
T ss_pred             ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence            8999999865 43   3344556665          88999999999888    24589999999876532211   223


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeec---------cCcceEEEEECCCCCEEEEEeCCCcEE
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMA---------HDSRIACFALTQDGQLLATSSTKGTLV  283 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~---------~~~~i~~v~~sp~g~~l~s~~~dg~~i  283 (368)
                      ..-+.+.|+|+++..++++  .-+++|.+|..+.  ..+..++.         .......|.+++||++|.++...-..|
T Consensus       191 ~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            3446799999999877765  4688999976665  33333322         233567899999999998887643338


Q ss_pred             EEEECCCC-ceeEeeE-eccCcccEEEEEEecCCCEEEEEeCC-CeEEEEEccCCC
Q 017642          284 RIFNTLDG-TLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDK-GTVHVFNLKVNS  336 (368)
Q Consensus       284 ~iwd~~~~-~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d-g~i~iwd~~~~~  336 (368)
                      -+|.+... ..+..+. ...+........|+++|++|+++..+ ..|.+|.++...
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            88877643 2222222 11133347889999999999998854 469999886543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=3.3e-10  Score=100.62  Aligned_cols=229  Identities=15%  Similarity=0.176  Sum_probs=139.3

Q ss_pred             CCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642           97 HGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (368)
Q Consensus        97 g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~  174 (368)
                      ++++++..  ++.|.|.|.++.+..  ..+. .+......+.+++++.++...+.|     |.|.++|+.+++.+.++..
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~--~~i~-~~~~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVV--ARIP-TGGAPHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEE--EEEE--STTEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEE--EEEc-CCCCceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEec
Confidence            34554444  677999998776655  3443 222224556788877655555666     9999999999999999998


Q ss_pred             CCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccC-------CCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642          175 RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA-------NPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i  243 (368)
                      .....++++++||++++    ..+.+.++|.++.+.++.+....       ..+..+..++....+++..  -+.+.|.+
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~v  154 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWV  154 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEE
Confidence            88889999999999888    58999999999999998886432       2455666677776544443  23467766


Q ss_pred             EecC-cceee-eeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEec--------------------
Q 017642          244 EHYA-SKRTK-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRG--------------------  300 (368)
Q Consensus       244 ~~~~-~~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~--------------------  300 (368)
                      -+.. ...+. .............|+|+++|++.+. .+.. |-++|..+++.+..+..+                    
T Consensus       155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw  233 (369)
T PF02239_consen  155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW  233 (369)
T ss_dssp             EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred             EEeccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence            3332 22222 2223344567889999999876654 3445 888887766544332110                    


Q ss_pred             ---------------------------------cCcccEEEEEEecCCCEEEEE----eCCCeEEEEEccCCCC
Q 017642          301 ---------------------------------ADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNSG  337 (368)
Q Consensus       301 ---------------------------------~~~~~v~~l~~sp~~~~l~s~----s~dg~i~iwd~~~~~~  337 (368)
                                                       ...++ .-+..+|+++++.+.    ...+.|.|+|.++.+.
T Consensus       234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~  306 (369)
T PF02239_consen  234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV  306 (369)
T ss_dssp             EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred             eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence                                             01112 445668999999887    4557899999988744

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=2.5e-11  Score=111.17  Aligned_cols=177  Identities=14%  Similarity=0.116  Sum_probs=124.3

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ..|.++|...+.......+...+...+|+|||+.++  .    ...|++||+.+++.... ..+...+..++|+||++.+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEE
Confidence            568899976444444344666789999999999888  1    24799999988865433 3344556678999999986


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-C--cEEEEEECCCCceeEeeEeccCcccE
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      ++......+..|++++........+..+........|+|||+.|+..+.. +  . |.++|+.+++.. .+..  +...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCCCc
Confidence            65543222345777777666666666665556678999999988766543 2  4 788888776644 3433  33457


Q ss_pred             EEEEEecCCCEEEEEeCCC---eEEEEEccCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSG  337 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~  337 (368)
                      ..+.|+|+|++|+.++.++   .|.+||+.++..
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence            7889999999998887765   789999877543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.43  E-value=2.2e-11  Score=100.82  Aligned_cols=245  Identities=13%  Similarity=0.214  Sum_probs=155.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-c--eEEEcccCC------------ceeEEEEEEe--CCeEEEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-I--FRRDFERGG------------GIGVVEMLFR--CNILALV  145 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~--~~~~~~~~~------------~~~~~~~~~~--~~~~~~~  145 (368)
                      ..+-|.++.|...|.+||+|+ +|.|.+|.-+.... .  ....+. .|            ...+..+.|.  .+...+.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            345789999999999999999 55588886543221 1  111121 11            1223344443  3443444


Q ss_pred             ecCCCCCCCCCcEEEEeCCCCc-----------------------------------EEEEEe--cCCceeEEEEeeCcc
Q 017642          146 GGGPDPQYPLNKVMIWDDHQSR-----------------------------------CIGELS--FRSEVRSVKLRRDRI  188 (368)
Q Consensus       146 s~~~d~~~~~~~i~vwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~~~~~~  188 (368)
                      ....|     .+|++|-+....                                   +.+.+.  |...|.++.++.|..
T Consensus       103 lstNd-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen  103 LSTND-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             EecCC-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            44444     899999765321                                   122233  677899999999988


Q ss_pred             EEE--eCCcEEEEEcCCC-eEE--EEEecc-----CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce-----eee
Q 017642          189 IVV--LEQKIFVYNFADL-KLL--HQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKF  253 (368)
Q Consensus       189 ~l~--~d~~i~vwd~~~~-~~~--~~~~~~-----~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-----~~~  253 (368)
                      .++  .|=.|.+|+++-- +..  .-++.+     ..-|++..|+|..-.++ ++ .+..|.|++-+.....     .+.
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f-~Y-SSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF-VY-SSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE-EE-ecCCCcEEEeechhhhhhcchhhh
Confidence            777  5679999998532 221  122221     23467788999876644 45 3568999994443211     111


Q ss_pred             ee------------ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC-CCceeEeeEeccC----------ccc---EE
Q 017642          254 IM------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGAD----------RAE---IY  307 (368)
Q Consensus       254 ~~------------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~----------~~~---v~  307 (368)
                      +.            .--..|..+.|+.+|+||++-..- + |+|||+. ..+++.++..+.+          ...   -.
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence            11            112357889999999999876644 4 9999994 5666666665211          112   24


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .++|+-++.++++|+..+..++|++..+...
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecCCCCcce
Confidence            5789999999999999999999997766544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.42  E-value=5.3e-12  Score=100.82  Aligned_cols=208  Identities=11%  Similarity=0.131  Sum_probs=146.0

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE--eCCcEEEEEcC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFA  202 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~  202 (368)
                      .+...+.++.|..+... .++..-     |.|++|++.+......+.  +...|+.+..-|++.+..  .|..+.+|++.
T Consensus        12 p~~~~v~s~~fqa~~rL-~sg~~~-----G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANERL-MSGLSV-----GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             cccchheehhhccchhh-hccccc-----ceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence            67777888888887774 444443     999999999988777776  677888998888876666  68889999885


Q ss_pred             CCeEE--------------EEEe---------------------------------------ccCCCeeEEEEe-cCCCe
Q 017642          203 DLKLL--------------HQIE---------------------------------------TIANPKGLCAVS-QGVGS  228 (368)
Q Consensus       203 ~~~~~--------------~~~~---------------------------------------~~~~~v~~~~~~-~~~~~  228 (368)
                      -+..+              ..+.                                       ...+.+.+..+. .++..
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            42110              0000                                       001112222221 23445


Q ss_pred             EEEEeecCCCCeEEEEecCcc-----------eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC--Cce--
Q 017642          229 LVLVCPGLQKGQVRVEHYASK-----------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--GTL--  293 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~-----------~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~--~~~--  293 (368)
                      ++++ .|.++|.+.+|+.+.+           .......|..+|.++.+.+.-..=++|+.+.. +..|++..  +.+  
T Consensus       166 ~lll-aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  166 FLLL-AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTGSLQI  243 (323)
T ss_pred             EEEE-EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccCcccc
Confidence            5555 4999999999998873           33345679999999999876555677787777 88998763  222  


Q ss_pred             eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      ..+...  ..-.|..+.+-||++.+|+++.|+.||||+.++.++.....-+
T Consensus       244 ~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH  292 (323)
T KOG0322|consen  244 RKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH  292 (323)
T ss_pred             cceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence            122222  2236889999999999999999999999999999888766555

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=4.4e-11  Score=109.63  Aligned_cols=218  Identities=13%  Similarity=0.083  Sum_probs=133.2

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEe-cCCCCCCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-D-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG-GGPDPQYPLN  156 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~d~~~~~~  156 (368)
                      ..+...+.+..|+|||+.|+..+ + +  .|.+||+.+++......+    ........|++++..++. ...+   ...
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----~g~~~~~~wSPDG~~La~~~~~~---g~~  286 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----PGINGAPRFSPDGKKLALVLSKD---GQP  286 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC----CCCcCCeeECCCCCEEEEEEeCC---CCe
Confidence            34556788899999999998776 3 2  288888876554322222    122235678887765443 2332   013


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      .|+++|+.+++......+........|+||++.++  .  +  ..|+++|+.+++..+.. .........+|+|||+.++
T Consensus       287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        287 EIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMI  365 (448)
T ss_pred             EEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEE
Confidence            58888988876544333555677889999998877  2  2  35778888777654322 1222234468999999765


Q ss_pred             EEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-Cc-EEEEEECCCCceeEeeEeccCcccE
Q 017642          231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       231 l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      ++.  ..++...|  .+........+.... ......|+|||++|+..+.+ |. .+.+++. +|.....+..  +.+.+
T Consensus       366 ~~~--~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~--~~g~~  439 (448)
T PRK04792        366 MVN--RTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA--GQGEV  439 (448)
T ss_pred             EEE--ecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC--CCCCc
Confidence            543  33454444  444444444443321 22345799999977765544 32 2667776 5666666654  34567


Q ss_pred             EEEEEec
Q 017642          307 YSLAFSS  313 (368)
Q Consensus       307 ~~l~~sp  313 (368)
                      ...+|+|
T Consensus       440 ~~p~Wsp  446 (448)
T PRK04792        440 KSPAWSP  446 (448)
T ss_pred             CCCccCC
Confidence            7788887

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.7e-10  Score=104.98  Aligned_cols=201  Identities=11%  Similarity=0.098  Sum_probs=127.2

Q ss_pred             CceeEEEEEEeCCeE--EE--EecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--CC--cE-
Q 017642          128 GGIGVVEMLFRCNIL--AL--VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--EQ--KI-  196 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~--~~--~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d~--~i-  196 (368)
                      .......-.|+|++.  .+  ++....    ...|.+.++..++........+.....+|+|||+.++  .  +|  .+ 
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g----~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLG----VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCC----CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence            334455667888853  23  332211    1468888998887655544666667789999998887  3  22  34 


Q ss_pred             -EEEEcCCC---eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe--cC--cceeeeeeccCcceEEEEECC
Q 017642          197 -FVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--YA--SKRTKFIMAHDSRIACFALTQ  268 (368)
Q Consensus       197 -~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~--~~~~~~~~~~~~~i~~v~~sp  268 (368)
                       .+|++..+   +..+............+|+|||+.++++.  ..+|...+|.  ..  +.....+..+...+....|+|
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP  336 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP  336 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence             44677652   33333322223345689999999866543  3456555543  22  233444555555678899999


Q ss_pred             CCCEEEEEeCC---CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC---CCeEEEEEccCCCCC
Q 017642          269 DGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKVNSGS  338 (368)
Q Consensus       269 ~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~  338 (368)
                      ||+.|+..+.+   .. |.+||+.+++.. .+..  ....+....|+|||+.|+....   ...|++||+..++..
T Consensus       337 DG~~Laf~~~~~g~~~-I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        337 DGKKIAFCSVIKGVRQ-ICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CCCEEEEEEcCCCCcE-EEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            99988876543   35 999999888765 3332  2335678999999998875432   356888998776543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.7e-10  Score=105.90  Aligned_cols=213  Identities=12%  Similarity=0.074  Sum_probs=132.8

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (368)
                      |.++|.+.....  ...  .+...+....|++++..++..+.+.  ....|.+||+.+++........+.+....|+|||
T Consensus       181 l~~~d~~g~~~~--~l~--~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG  254 (430)
T PRK00178        181 LQRSDYDGARAV--TLL--QSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG  254 (430)
T ss_pred             EEEECCCCCCce--EEe--cCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence            555555433221  222  3455677888888876655433210  0147999999988765444455566678999999


Q ss_pred             cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC--eEEEEecCcceeeeeeccCc
Q 017642          188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS  259 (368)
Q Consensus       188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~  259 (368)
                      +.++    .++  .|++||+.+++.. .+..+........|+|||+.+++..  ..+|  .|++++........+.....
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s--~~~g~~~iy~~d~~~g~~~~lt~~~~  331 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTS--DRGGKPQIYKVNVNGGRAERVTFVGN  331 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECCCCCEEEeecCCC
Confidence            8776    233  6999999887654 3444444556688999999866543  2334  45555554444444332223


Q ss_pred             ceEEEEECCCCCEEEEEeCC-C--cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC---CeEEEEEcc
Q 017642          260 RIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK  333 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~  333 (368)
                      ......|+|||++|+..+.+ +  . |.+||+.+++.. .+...   .......|+|||++++..+.+   ..|+++++.
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            34567899999988876643 3  4 888999887653 33321   122356899999998876543   346677774


Q ss_pred             C
Q 017642          334 V  334 (368)
Q Consensus       334 ~  334 (368)
                      .
T Consensus       407 g  407 (430)
T PRK00178        407 G  407 (430)
T ss_pred             C
Confidence            3

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.1e-10  Score=105.18  Aligned_cols=198  Identities=12%  Similarity=0.059  Sum_probs=122.0

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCC--cEEEEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQ--KIFVYN  200 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~--~i~vwd  200 (368)
                      .....+....|+|++..++....+.  ....|++||+.+++........+.....+|+|||+.++    .++  .|+++|
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            3455667788888876555432210  01469999998887544333444556789999999776    245  488889


Q ss_pred             cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe--EEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC
Q 017642          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                      +.+++.. .+..+.......+|+||++.+++..  ..++.  |.+++........+..........+|+|||++|+..+.
T Consensus       293 l~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s--~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        293 IATKALT-RITRHRAIDTEPSWHPDGKSLIFTS--ERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             CCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            9877653 3433444556789999999865543  33444  44445544444444322233445789999998877655


Q ss_pred             C-Cc-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC-CC--eEEEEEcc
Q 017642          279 K-GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVHVFNLK  333 (368)
Q Consensus       279 d-g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~iwd~~  333 (368)
                      + +. .|.++|+.+++.. .+...   .......|+|||+.|+..+. ++  .|++++++
T Consensus       370 ~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        370 TNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             cCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            3 32 1566788777653 33321   12234589999998876553 33  36777764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1e-10  Score=107.43  Aligned_cols=219  Identities=12%  Similarity=0.040  Sum_probs=134.9

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE-ecCCCCCCCC
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-D-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPL  155 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~  155 (368)
                      ...+...+...+|+|||+.|+..+ + +  .|.+|++++++......    .........|++++..++ +...+   .+
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----~~g~~~~~~~SpDG~~la~~~~~~---g~  266 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----FEGLNGAPAWSPDGSKLAFVLSKD---GN  266 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC----CCCCcCCeEECCCCCEEEEEEccC---CC
Confidence            345667889999999999998766 3 2  38888987665432222    222334577888775444 33222   01


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e--C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~--d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      ..|++||+.+++......+........|+|||+.++  .  +  ..|+++|+.+++..+.. ..........|+|+|+.+
T Consensus       267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTL  345 (430)
T ss_pred             ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence            479999998887554333555667789999998776  2  2  36888898877644332 122233457899999986


Q ss_pred             EEEeecCCCC--eEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-c-EEEEEECCCCceeEeeEeccCccc
Q 017642          230 VLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       230 ~l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      ++..  ..++  .|.+++........+.. ........|+|||+.|+..+.++ . .|.++++. +.....+..  +.+.
T Consensus       346 ~~~~--~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~  419 (430)
T PRK00178        346 VMVH--RQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGE  419 (430)
T ss_pred             EEEE--ccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCC
Confidence            5543  2334  45556655544444432 22233568999999887766542 2 26777764 444444543  3456


Q ss_pred             EEEEEEec
Q 017642          306 IYSLAFSS  313 (368)
Q Consensus       306 v~~l~~sp  313 (368)
                      +...+|+|
T Consensus       420 ~~~p~ws~  427 (430)
T PRK00178        420 VREPSWSP  427 (430)
T ss_pred             cCCCccCC
Confidence            67777876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=4.1e-10  Score=102.50  Aligned_cols=224  Identities=8%  Similarity=-0.078  Sum_probs=131.6

Q ss_pred             CCCCEEEEEEcCCCCEEE---EEe-CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           84 PPPTLLHISFNQDHGCFA---AGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~---~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....+.+-+|+|||+.++   +.. ++.  |.+.+++.++......+    ........|+|++..++.........+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC----CCCccceEECCCCCEEEEEECCCCCccee
Confidence            445567779999998532   333 333  77778776655433333    22334567888775544322110011123


Q ss_pred             EEEEeCCCC---cEEEEEec-CCceeEEEEeeCccEEE--e--CCc--EEEEEcCC-CeEEEEEeccCCCeeEEEEecCC
Q 017642          158 VMIWDDHQS---RCIGELSF-RSEVRSVKLRRDRIIVV--L--EQK--IFVYNFAD-LKLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       158 i~vwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~--~--d~~--i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      +.+|++..+   +....... .......+|+|||+.++  .  +|.  |+++++.. +.....+......+....|+|||
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            444776653   33333322 23456789999999777  2  454  55555532 23344444444556778999999


Q ss_pred             CeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEeccCc
Q 017642          227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADR  303 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~  303 (368)
                      +.++++........|.+++..+.....+......+....|+|||++|+....   ... |.+||+..++......   ..
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~---~~  414 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI---GS  414 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec---CC
Confidence            9865543211234677777777666666544456778999999997775433   235 8899988777554333   34


Q ss_pred             ccEEEEEEecCC
Q 017642          304 AEIYSLAFSSNA  315 (368)
Q Consensus       304 ~~v~~l~~sp~~  315 (368)
                      +.+...+|+|-.
T Consensus       415 g~~~~p~Ws~~~  426 (428)
T PRK01029        415 GEKRFPSWGAFP  426 (428)
T ss_pred             CcccCceecCCC
Confidence            556778888743

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.1e-10  Score=102.83  Aligned_cols=208  Identities=16%  Similarity=0.209  Sum_probs=144.7

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-----------------------------c---
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-----------------------------F---  174 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-----------------------------~---  174 (368)
                      .++.....+..++++.++.+.+.-    .-.|++||+..-....+-.                             |   
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~Y----KP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTY----KPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEeccc----CCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence            466667788888888776654431    1579999987532211110                             0   


Q ss_pred             --------CCceeEEEEee-C-ccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642          175 --------RSEVRSVKLRR-D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (368)
Q Consensus       175 --------~~~v~~~~~~~-~-~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i  243 (368)
                              ...-.+++++. . ..+++ ....|+-++++.|+-+..+....+.+++|.+++...  ++++ |..+|.|..
T Consensus       125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-Gt~~g~VEf  201 (703)
T KOG2321|consen  125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-GTEDGVVEF  201 (703)
T ss_pred             CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-cccCceEEE
Confidence                    01112233222 1 12233 566899999999999988888888999999988765  4565 889999999


Q ss_pred             EecCcceee-ee------eccCc-----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          244 EHYASKRTK-FI------MAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       244 ~~~~~~~~~-~~------~~~~~-----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      |+...+... .+      ..|.+     .|+++.|+.+|-.+++|..+|. |.|||++..+++..- .+...-+|..+.|
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~k-dh~~e~pi~~l~~  279 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVK-DHGYELPIKKLDW  279 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeec-ccCCccceeeecc
Confidence            997764322 22      22333     3999999999999999999999 999999999988544 3335668999999


Q ss_pred             ecC--CCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          312 SSN--AQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       312 sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      .+.  +..|++. +...++|||-.+++.....+..
T Consensus       280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt  313 (703)
T KOG2321|consen  280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT  313 (703)
T ss_pred             cccCCCceEEec-chHHhhhcccccCCceeecccc
Confidence            775  3455544 5667999999999987655543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.2e-10  Score=98.21  Aligned_cols=154  Identities=12%  Similarity=0.117  Sum_probs=120.1

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC------CcEEEEEe--cCCceeEEEEeeCccEEE---eCCc
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELS--FRSEVRSVKLRRDRIIVV---LEQK  195 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~------~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~  195 (368)
                      +|...|.++.|+.++.++++|++|     ..+++|++..      .+++....  |...|.+++|.-.++++.   .+++
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD-----~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDD-----MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCc-----ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            788889999999999999999998     9999999753      46666665  678999999999888888   5889


Q ss_pred             EEEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce----eeeeeccCcceEEEEECCC
Q 017642          196 IFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD  269 (368)
Q Consensus       196 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~v~~sp~  269 (368)
                      |.+.|+++.+.+..+..  ..+.|..+..+|-.+.+++   .+.++.|.+|+....+    .............+.|+|.
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~---~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV---VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEE---EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence            99999999988877742  2347888999998664332   3478999998866533    1122234455778889996


Q ss_pred             CC-EEEEEeCCCcEEEEEECC
Q 017642          270 GQ-LLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       270 g~-~l~s~~~dg~~i~iwd~~  289 (368)
                      .. +|++.+..+. +-+||++
T Consensus       206 ~P~Li~~~~~~~G-~~~~D~R  225 (609)
T KOG4227|consen  206 TPALILVNSETGG-PNVFDRR  225 (609)
T ss_pred             CceeEEeccccCC-CCceeec
Confidence            54 7888888888 9999985

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=3.4e-10  Score=100.26  Aligned_cols=189  Identities=12%  Similarity=0.207  Sum_probs=141.1

Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe----cCCceeEEEEe------e--------------CccEEE---eC
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLR------R--------------DRIIVV---LE  193 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~l~---~d  193 (368)
                      ..+++....|     |.+++||...++...+|.    ..+...+..|.      |              +...++   ..
T Consensus         5 ~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    5 LDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             hheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            3455555555     999999999998888775    23444444443      1              112233   47


Q ss_pred             CcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCCC
Q 017642          194 QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDG  270 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~g  270 (368)
                      |.|.+|++..|+....+.  .|.+.|.++.++.+-..   +++++.|+.+..|+.... .++.+......+.+++.+|||
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c---iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC---IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc---eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            899999999999888775  57788888877766653   335667888888877664 445566777789999999999


Q ss_pred             CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC-----CCEEEEE-eCCCeEEEEEccCCCCCCCCC
Q 017642          271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQWLAVS-SDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s~-s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      +.|++++..   |++||+++++.+..|.+  |.++|.++.|--+     |.++.++ ..+.-|.+|-++.....+...
T Consensus       157 ~~l~~as~~---ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~  229 (541)
T KOG4547|consen  157 KILLTASRQ---IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLS  229 (541)
T ss_pred             CEEEeccce---EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhh
Confidence            999999854   99999999999999998  8999999999877     6666654 456668999888755544433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.34  E-value=5.7e-09  Score=90.82  Aligned_cols=236  Identities=11%  Similarity=0.037  Sum_probs=148.5

Q ss_pred             EcCCCCEEEEEeC-----------CeEEEEEecCCCcceEEEcccC----CceeEEEEEEeCCeEEEEecC-C-CCCCCC
Q 017642           93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGG-P-DPQYPL  155 (368)
Q Consensus        93 ~s~~g~~l~~~~d-----------~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~-~-d~~~~~  155 (368)
                      ++|||+.|.++.-           +.|.+||..+.+......+...    ....-..+.+++++..++... . +     
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~-----  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS-----  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC-----
Confidence            8999998766543           5599999998887755444211    112233567777776555333 2 4     


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCC-CeEE-EE---EeccCCCeeE-EEEec-CCC
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLL-HQ---IETIANPKGL-CAVSQ-GVG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~-~~~~-~~---~~~~~~~v~~-~~~~~-~~~  227 (368)
                      +.|.++|+.+++.+.++...+...-...+++...+. .||......+.+ |+.. ..   +.....++.. -.+.+ ++.
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence            899999999999999998655444444544444433 566655544432 2211 11   1110111100 13455 676


Q ss_pred             eEEEEeecCCCCeEEEEecCc------ceeeeeec-------cCcceEEEEECCCCCEEEEEeC----------CCcEEE
Q 017642          228 SLVLVCPGLQKGQVRVEHYAS------KRTKFIMA-------HDSRIACFALTQDGQLLATSST----------KGTLVR  284 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~------~~~~~~~~-------~~~~i~~v~~sp~g~~l~s~~~----------dg~~i~  284 (368)
                      .+++.+    .|.|.+-+...      .....+..       ..+.+.-+++++++++++....          .+. |.
T Consensus       208 ~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~  282 (352)
T TIGR02658       208 LVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LF  282 (352)
T ss_pred             EEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EE
Confidence            544432    49999854322      11111111       2233455999999998777431          135 99


Q ss_pred             EEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCCC
Q 017642          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~  341 (368)
                      ++|..+++.+..+..+   ..+..|+++||++ +|++.. .++.|.++|+.+++.....
T Consensus       283 ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       283 VVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999999999998863   4789999999999 777666 5788999999998876543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=1.7e-10  Score=97.17  Aligned_cols=220  Identities=14%  Similarity=0.159  Sum_probs=148.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCc--ceEEEcccCCceeEEEEEEeCCeEE-EEecCCCCCCCCCcEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVM  159 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~d~~~~~~~i~  159 (368)
                      .....|-.++.. ||.++++-+++.+.+|..+.+..  .....+  .....+..+.-.+.... +++|+..   .-+.++
T Consensus       103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke---~~n~lk  176 (412)
T KOG3881|consen  103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKE---NINELK  176 (412)
T ss_pred             cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchh---ccccee
Confidence            344455555543 56555555577899999874431  111222  22234444544443333 3334432   014699


Q ss_pred             EEeCCCCcEEEEEe----------cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEe
Q 017642          160 IWDDHQSRCIGELS----------FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       160 vwd~~~~~~~~~~~----------~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~  223 (368)
                      +||++..+.+.+-+          ..-.++++.|-+.  ...++   .-+.+++||.+.+ +++..+.-...++.++...
T Consensus       177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence            99999886655433          2335677788776  55555   4689999999765 5677777778899999999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCc-ceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYAS-KRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      |+++.++   +|..-|.+..++.+. +.... +.+-.+.|++|..+|.+++|++++-|+. |||+|+.+.+++.....  
T Consensus       257 p~gn~Iy---~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv--  330 (412)
T KOG3881|consen  257 PSGNFIY---TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV--  330 (412)
T ss_pred             CCCcEEE---EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh--
Confidence            9998644   366778888865555 43333 7788899999999999999999999999 99999999777766554  


Q ss_pred             CcccEEEEEEecCC
Q 017642          302 DRAEIYSLAFSSNA  315 (368)
Q Consensus       302 ~~~~v~~l~~sp~~  315 (368)
                       ...+++|.+.++-
T Consensus       331 -Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  331 -KSRLTFILLRDDV  343 (412)
T ss_pred             -hccccEEEecCCc
Confidence             3457777776543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.30  E-value=8.7e-10  Score=91.08  Aligned_cols=233  Identities=11%  Similarity=0.093  Sum_probs=151.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC--C-------
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP--Q-------  152 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~-------  152 (368)
                      -..++.+++|||||+.+...+  +-.|.||.+.+.........  .+  .+..++|++++.+.+-..+.-  .       
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~--~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KT--NVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--cc--CceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            355788999999998776655  77799999988776654332  22  335566777766554433310  0       


Q ss_pred             --------------------C--CCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe--
Q 017642          153 --------------------Y--PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--  205 (368)
Q Consensus       153 --------------------~--~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~--  205 (368)
                                          +  .++.+.+||.--.-.+..+...-.+..++|+|.+++++   .|+.+++.+--+-+  
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                                0  23457777744333444555567899999999998888   68877775432211  


Q ss_pred             ----------------------------------------------------------EEEEEe------ccCCCeeEEE
Q 017642          206 ----------------------------------------------------------LLHQIE------TIANPKGLCA  221 (368)
Q Consensus       206 ----------------------------------------------------------~~~~~~------~~~~~v~~~~  221 (368)
                                                                                .++.++      .....+..++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence                                                                      011111      1112345688


Q ss_pred             EecCCCeEEEEee-cCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          222 VSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       222 ~~~~~~~~~l~~~-g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                      |++|..+  +++- ...-..+-+|+.....+..+-....+|....|+|....|+.+..... +++|...-...+ .... 
T Consensus       326 fs~Ds~y--~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr-LY~W~psg~~~V-~vP~-  400 (447)
T KOG4497|consen  326 FSCDSTY--AATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR-LYFWAPSGPRVV-GVPK-  400 (447)
T ss_pred             ecCCceE--EeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce-EEEEcCCCceEE-ecCC-
Confidence            9998864  3331 12233455577777666666566779999999999888888887777 999986543333 3333 


Q ss_pred             cCcccEEEEEEecCCCEEEEEeCCCe
Q 017642          301 ADRAEIYSLAFSSNAQWLAVSSDKGT  326 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~~~l~s~s~dg~  326 (368)
                       ..-.|..+.|.-+|..++-.+.|..
T Consensus       401 -~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  401 -KGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             -CCceeeeEEecCCCcEEEEEcCCce
Confidence             3457999999999999999988864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=1.7e-08  Score=89.70  Aligned_cols=218  Identities=15%  Similarity=0.172  Sum_probs=136.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEE--Ecc---------cCCceeEEEEEEeCCeEEEEe--cCC
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRR--DFE---------RGGGIGVVEMLFRCNILALVG--GGP  149 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~s--~~~  149 (368)
                      ......++++|++++|+++.  ++.|.+++++........  .+.         ........++.++|++.+++.  -+.
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence            34556789999999999987  666999999875332221  111         023345667888887654443  333


Q ss_pred             CCCCCCCcEEEEeCCCCc--E--EEEEe--cCCceeEEEEeeCccEEE----eCCcEEEEEcC--CCe--EEEEEecc--
Q 017642          150 DPQYPLNKVMIWDDHQSR--C--IGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA--DLK--LLHQIETI--  213 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~--~--~~~~~--~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~--~~~--~~~~~~~~--  213 (368)
                            ..|.+|++....  .  ...+.  ....-+.+.|+|+++++.    .++.|.++++.  +++  .++.+...  
T Consensus       166 ------D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  166 ------DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             ------TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             ------CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence                  589999987654  3  22333  567789999999998776    48899999997  443  23333221  


Q ss_pred             ----CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--c---ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          214 ----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--S---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       214 ----~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~---~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                          ......+.++|||+.+++...  ..+.|.++..+  .   ..+..+.......+.++++|+|++|+++..+...|.
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             cccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence                113567999999998776542  36677775552  2   223333334445799999999999998886554499


Q ss_pred             EEEC--CCCceeEeeEeccCcccEEEEEE
Q 017642          285 IFNT--LDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       285 iwd~--~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      +|++  .+|.+...-... .-....||.|
T Consensus       318 vf~~d~~tG~l~~~~~~~-~~~~p~ci~f  345 (345)
T PF10282_consen  318 VFDIDPDTGKLTPVGSSV-PIPSPVCIVF  345 (345)
T ss_dssp             EEEEETTTTEEEEEEEEE-ESSSEEEEEE
T ss_pred             EEEEeCCCCcEEEecccc-cCCCCEEEeC
Confidence            9976  466654333211 2234567665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.28  E-value=1.7e-10  Score=108.27  Aligned_cols=191  Identities=12%  Similarity=0.137  Sum_probs=144.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCcee-----EEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVR-----SVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                      +.+.+||...+.....+.+.....     -+.++++..+++   .-+.|.+|+...-+....+.+|.+.+..+.++-||.
T Consensus       109 ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~  188 (967)
T KOG0974|consen  109 NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR  188 (967)
T ss_pred             ceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc
Confidence            789999988887777776544332     223445555665   468999999863333335789999999999999998


Q ss_pred             eEEEEeecCCCCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      .  ++ +.++|..+++|........  ...+|...|..+.|.|+  .++++++|-+ .++|+. +++.+..+..+ ....
T Consensus       189 ~--i~-s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~~~l~~y~~h-~g~~  260 (967)
T KOG0974|consen  189 Y--IA-SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NGTQLEVYDEH-SGKG  260 (967)
T ss_pred             E--EE-EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-ccceehhhhhh-hhcc
Confidence            5  33 3569999999998875443  46689999999999988  8999999999 999974 55666677764 3457


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCCCCCCCCccCC
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS  354 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  354 (368)
                      |+.++..++...+++++.|+.+++|++......-..+..+...+..+..
T Consensus       261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~~~~~~s~~kl~  309 (967)
T KOG0974|consen  261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQSSLLSSIVKLK  309 (967)
T ss_pred             eeEEEEcCCceEEEeeccCcchhhhhhhccccccceeeeeeecchhhhc
Confidence            9999999999999999999999999998877766555544333333333

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3e-09  Score=93.84  Aligned_cols=220  Identities=16%  Similarity=0.209  Sum_probs=149.7

Q ss_pred             ccCCCCCEEEEEEcCCCC--EEEEEe---CC---eEEEEEecCCCc---ceEEEcccCCceeEEEEEEeCC---eEEEEe
Q 017642           81 SSSPPPTLLHISFNQDHG--CFAAGT---DH---GFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCN---ILALVG  146 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~--~l~~~~---d~---~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~s  146 (368)
                      ...|...|..+.+||.+.  .+|+--   ++   .|+||.+.....   ...+.|-   ...-..+.|+..   .+++++
T Consensus       161 ~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF---kadkvqm~WN~~gt~LLvLas  237 (566)
T KOG2315|consen  161 HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF---KADKVQMKWNKLGTALLVLAS  237 (566)
T ss_pred             eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc---ccceeEEEeccCCceEEEEEE
Confidence            446778899999998744  455432   22   299998762111   1122331   222345666643   334445


Q ss_pred             cCCCC----CCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642          147 GGPDP----QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPK  217 (368)
Q Consensus       147 ~~~d~----~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v  217 (368)
                      ..-|.    -|...++++++++...+...+...++|.++.|+++++-++     .-.++.|||++ +..+..+  ..++-
T Consensus       238 tdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpR  314 (566)
T KOG2315|consen  238 TDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPR  314 (566)
T ss_pred             EeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCc
Confidence            44443    1556789999988666666777899999999999997666     35689999985 5555554  56677


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeC------CCcEEEEEECCC
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLD  290 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~------dg~~i~iwd~~~  290 (368)
                      +.+-|+|.|+.++||--|...|.+.|||... +.+..+..-  .-+-+.|+|||.+++|+..      |.. ++||+. +
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhy-t  390 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHY-T  390 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCC-eEEEEe-c
Confidence            8899999999888877677889999988766 333344433  3456789999999998875      566 999996 6


Q ss_pred             CceeEeeEeccCcccEEEEEEec
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      |..+....-   ......+.|-|
T Consensus       391 G~~l~~~~f---~sEL~qv~W~P  410 (566)
T KOG2315|consen  391 GSLLHEKMF---KSELLQVEWRP  410 (566)
T ss_pred             Cceeehhhh---hHhHhheeeee
Confidence            766654332   11467777875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=2.2e-08  Score=100.46  Aligned_cols=236  Identities=11%  Similarity=0.129  Sum_probs=145.8

Q ss_pred             EEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCC-------------ceeEEEEEEeCCe-EEEEecCCCCC
Q 017642           89 LHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGG-------------GIGVVEMLFRCNI-LALVGGGPDPQ  152 (368)
Q Consensus        89 ~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~s~~~d~~  152 (368)
                      ..+++++++. ++++-. .+.|++||.+... .  ..+...+             -..-..+++++++ .++++....  
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i--~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n--  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-I--VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN--  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-E--EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC--
Confidence            4568887644 444444 5569999975322 1  1121000             0123456676543 333433332  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEec------------------CCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEE
Q 017642          153 YPLNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~  210 (368)
                         +.|+++|..++. +.++..                  -..-..+++++ ++.+++   .++.|++||..++... .+
T Consensus       646 ---~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~  720 (1057)
T PLN02919        646 ---HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VF  720 (1057)
T ss_pred             ---ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EE
Confidence               789999987764 333310                  11346789999 455544   4678999999877543 22


Q ss_pred             ecc---------------CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee--------------cc----
Q 017642          211 ETI---------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------------AH----  257 (368)
Q Consensus       211 ~~~---------------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--------------~~----  257 (368)
                      .+.               ......++++++++.++++-  ..++.|++|+........+.              .+    
T Consensus       721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            111               01234589999998777654  45789999876543221111              00    


Q ss_pred             ----CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-----------CcccEEEEEEecCCCEEEEEe
Q 017642          258 ----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       258 ----~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s  322 (368)
                          -.....++++++|+++++-..++. |++||..++........+.           .-.....|+++++|+++++-+
T Consensus       799 ~~~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt  877 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT  877 (1057)
T ss_pred             hhhhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence                112468899999998888888888 9999988776553221110           112467899999999888888


Q ss_pred             CCCeEEEEEccCCCC
Q 017642          323 DKGTVHVFNLKVNSG  337 (368)
Q Consensus       323 ~dg~i~iwd~~~~~~  337 (368)
                      .++.|++||+++++.
T Consensus       878 ~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        878 NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCEEEEEECCCCcc
Confidence            999999999988764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=4.4e-10  Score=105.62  Aligned_cols=192  Identities=10%  Similarity=0.092  Sum_probs=144.2

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEE---EEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVV---EMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      +.|....+.-+.+.++.+. ++.+.+||.......  ..+.........   -+-.+.+...++++.--     +.|.+|
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~-----~~iivW  160 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAEELYIASGSVF-----GEIIVW  160 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCcEEEEEecccc-----ccEEEE
Confidence            3444445555666676666 888999997654333  222112222222   23346777888888766     999999


Q ss_pred             eCCCC-cEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          162 DDHQS-RCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       162 d~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +.... ..++...|.+.|..+.++-||++++   .|..+++|++++.+... ..-+|...+..+++.++  .  +++ ++
T Consensus       161 ~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~--i~t-~g  235 (967)
T KOG0974|consen  161 KPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R--IIT-VG  235 (967)
T ss_pred             eccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e--eEE-ec
Confidence            98733 3343444999999999999999999   68999999999987665 55679999999999988  2  443 67


Q ss_pred             CCCeEEEEecCcceeeeeeccCc-ceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          237 QKGQVRVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~~~~~-~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .|.+.++|..++..+..+..|.. .|..++..++...+++++.|+. +++||+..
T Consensus       236 edctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~  289 (967)
T KOG0974|consen  236 EDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG  289 (967)
T ss_pred             cceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence            89999999999988888888854 6899999998889999999999 99999853

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.23  E-value=2.1e-09  Score=89.32  Aligned_cols=202  Identities=12%  Similarity=0.188  Sum_probs=135.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEeCCe-EEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~d~~-i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      +++....+.+++++.+.++.+.|.+|-+++ +.-+.+...  +....+... .|...+..+.|+-....+++.+.|    
T Consensus        61 psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~d----  135 (404)
T KOG1409|consen   61 PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKD----  135 (404)
T ss_pred             chhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccc----
Confidence            344555677899999999999999999544 777765421  122223332 678888889998888888888876    


Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEc--CCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                       ..+.---.+.+..+..+.......++.+.-.-.++. ..|.|.+..+  ..-..+.++.+|.+.+.+++|.+....  +
T Consensus       136 -k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~--L  212 (404)
T KOG1409|consen  136 -KQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL--L  212 (404)
T ss_pred             -cceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE--E
Confidence             444333334444444333222222222222211111 2344544444  345678888999999999999887753  3


Q ss_pred             EeecCCCCeEEEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          232 VCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                       .+|..|..+.+|+..++.  ...+.+|...|..+...+.-+.|.+++.||. |.+||+.
T Consensus       213 -fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn  270 (404)
T KOG1409|consen  213 -FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN  270 (404)
T ss_pred             -EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence             358889999999988754  4456789999999988888889999999999 9999984

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.23  E-value=3e-09  Score=86.65  Aligned_cols=220  Identities=12%  Similarity=0.127  Sum_probs=141.9

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEe----CCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec-------C
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------R  175 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-------~  175 (368)
                      .+.+|++...+......+.......+..+.|.    .....++-...+     |.|.++.....+....+..       .
T Consensus        47 kl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~~  121 (339)
T KOG0280|consen   47 KLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKISV  121 (339)
T ss_pred             ceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhhh
Confidence            37788876554432112211233344445543    111233333333     8899987655444444330       1


Q ss_pred             CceeEEEEeeCccEEE---eCCcEEEEEcCCCeE--EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-
Q 017642          176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-  249 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-  249 (368)
                      ....++.|++.+.-++   .+|.+.+-+...+..  ++.++.|..+.....|+.....  ++++|+.|+.+..|+.... 
T Consensus       122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn--lvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN--LVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc--eEEecCCCceEEEEEecCCc
Confidence            1245667887776666   578888666554433  3477889888888888877665  4557999999999887732 


Q ss_pred             -eee-eeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCC-CceeEeeEeccCcccEEEEEEecCC--CEEEEEeC
Q 017642          250 -RTK-FIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSD  323 (368)
Q Consensus       250 -~~~-~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~s~s~  323 (368)
                       .+. ..+.|...|.+|.-+| .+.+|++|+.|.. |++||.++ ++++..-.   -.+.|+.+.++|.-  ++|+++-.
T Consensus       200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHh
Confidence             222 2456888999998876 4669999999999 99999984 66665544   35789999999843  34555444


Q ss_pred             CCeEEEEEccCCCCC
Q 017642          324 KGTVHVFNLKVNSGS  338 (368)
Q Consensus       324 dg~i~iwd~~~~~~~  338 (368)
                      .| .+|-+.+.+..+
T Consensus       276 ~G-~ki~~~~~~~~e  289 (339)
T KOG0280|consen  276 NG-AKILDSSDKVLE  289 (339)
T ss_pred             cC-ceEEEecccccc
Confidence            54 788888776655

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=7.1e-09  Score=92.06  Aligned_cols=185  Identities=13%  Similarity=0.094  Sum_probs=133.2

Q ss_pred             CCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--------------------CCeEEEEecCCCCCC
Q 017642           95 QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--------------------CNILALVGGGPDPQY  153 (368)
Q Consensus        95 ~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~s~~~d~~~  153 (368)
                      |-+.++|... |+.++||+...++......-...-....++..|.                    .+...++-|...   
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~---   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ---   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence            4466888887 7779999987665542211100112222222221                    233444444444   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                        |.|.+|++..|+....+.   |.+.|.++.++.+-..+.   .|+.+..|+...++.++.+......+..++++||+.
T Consensus        80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence              899999999999888886   889999999888766666   588999999999999999988888889999999988


Q ss_pred             eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCC-----CCEEEEEe-CCCcEEEEEECCC
Q 017642          228 SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD-----GQLLATSS-TKGTLVRIFNTLD  290 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~-----g~~l~s~~-~dg~~i~iwd~~~  290 (368)
                      .++++     .++|++|+... +.+..+.+|.++|+++.|--+     |.++.++. .+.. |.+|-+..
T Consensus       158 ~l~~a-----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTA-----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK  221 (541)
T ss_pred             EEEec-----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence            54432     48999977655 667789999999999999876     66666544 3444 88887654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.21  E-value=1e-09  Score=91.16  Aligned_cols=245  Identities=11%  Similarity=0.129  Sum_probs=167.9

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .+...+|.+.|+....-|...-+.+.+ |..++||--.. ...+-..+.+..+..+..+.+..+...++.+-+.     |
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrd-s~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n-----g   90 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRD-SGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN-----G   90 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecc-ccccCchhhhhCCCCceEeeeeccceEEEEEEec-----c
Confidence            345567888888887777777777777 88899996432 2333344445778889999999988888877665     8


Q ss_pred             cEEEEeCCC----CcEEEEEe-cCCceeEEEEeeCccEEEe---CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          157 KVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       157 ~i~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      ++.-+.+..    ....+.+. |...|..+-|+....+++.   |..+.---.+.+..+..+... ..-....+    +-
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~----d~  165 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQF----DA  165 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCce----ee
Confidence            888886543    33344444 8899999999887777772   333332223444332211100 00000111    10


Q ss_pred             EEEEeecCCCCeEEE---EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-eEeeEeccCcc
Q 017642          229 LVLVCPGLQKGQVRV---EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRA  304 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i---~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~  304 (368)
                      . .+..|...|.|.+   .......+.++.+|.+.+++++|.+...+|.+|..|.. +.+||+.-.+- ..++.+  |..
T Consensus       166 ~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--h~~  241 (404)
T KOG1409|consen  166 L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--HND  241 (404)
T ss_pred             E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--chh
Confidence            1 2233556666655   44555778889999999999999999999999999999 99999975543 335555  677


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .|..+...+.-+.|.+++.||.|.+|+.+....
T Consensus       242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  242 KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             hhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            899998888888999999999999999976543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.21  E-value=2.2e-09  Score=102.74  Aligned_cols=212  Identities=12%  Similarity=0.104  Sum_probs=145.5

Q ss_pred             cceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCC-------cEEEEEe-cCCceeEEEEeeCcc
Q 017642          118 EIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRI  188 (368)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~  188 (368)
                      +.+..++ |.|...+..++.++.. -++++++.|     |+|++||.+.-       +...++. ....+.++...+.+.
T Consensus      1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             ceEeehh-hhccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            3444455 3777777788776655 899999998     99999997531       3444555 678899999888888


Q ss_pred             EEE---eCCcEEEEEcCC--Ce-----EEEEEeccC-CC-eeEEEEecCCCeEEEEeecCCCCeEEEEecCccee-ee--
Q 017642          189 IVV---LEQKIFVYNFAD--LK-----LLHQIETIA-NP-KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF--  253 (368)
Q Consensus       189 ~l~---~d~~i~vwd~~~--~~-----~~~~~~~~~-~~-v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~--  253 (368)
                      .++   .||.|++.++.-  .+     +.+....+. +. +..-++........+++ +...+.|..|+...... ..  
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhh
Confidence            777   699999999864  11     122222221 22 22333433333323444 44567777787665332 22  


Q ss_pred             eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC---CEEEEEe--CCCeEE
Q 017642          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA---QWLAVSS--DKGTVH  328 (368)
Q Consensus       254 ~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~s~s--~dg~i~  328 (368)
                      .....+.|++++.+|.+.+++.|+..|. +.+||++=+.++....-. +..+|..+..+|-.   ...++++  ..+.|-
T Consensus      1191 ~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             cCccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence            2234578999999999999999999999 999999998888887754 45788888887643   4555554  467899


Q ss_pred             EEEccCCCCC
Q 017642          329 VFNLKVNSGS  338 (368)
Q Consensus       329 iwd~~~~~~~  338 (368)
                      +|++.++...
T Consensus      1269 ~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1269 TWNMETGLRQ 1278 (1431)
T ss_pred             eeecccCcce
Confidence            9999998543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.2e-08  Score=90.71  Aligned_cols=192  Identities=11%  Similarity=0.053  Sum_probs=122.4

Q ss_pred             eEEEEEEeCCeE--EEE-ecC-CCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE------eCCcEEEEE
Q 017642          131 GVVEMLFRCNIL--ALV-GGG-PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV------LEQKIFVYN  200 (368)
Q Consensus       131 ~~~~~~~~~~~~--~~~-s~~-~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~d~~i~vwd  200 (368)
                      ......|++++.  ++. +.. .+     ..|+++|+.+++........+......|+|||+.++      .+..|+++|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~-----~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  263 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERK-----PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD  263 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCC-----CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence            566778888764  332 322 12     679999999887766555666677788999998776      145799999


Q ss_pred             cCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-
Q 017642          201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-  279 (368)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-  279 (368)
                      +.+++.. .+..+........|+|||+.+++.+.......|.+.+..+.....+......  ...|+|||++|+..... 
T Consensus       264 l~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        264 TNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             CCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCC
Confidence            8877643 3433333334568999999877765322222566555555444333322211  24899999988766543 


Q ss_pred             ------C--cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC-C--eEEEEEccCC
Q 017642          280 ------G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLKVN  335 (368)
Q Consensus       280 ------g--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g--~i~iwd~~~~  335 (368)
                            +  . |.+.|+.+++.. .+...   .......|+|||+.|+..+.+ +  .|.+.+++..
T Consensus       341 ~~~~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        341 NNEFGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CcccCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                  2  4 888898887654 44432   223468899999988766532 2  3666666544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1.1e-10  Score=115.04  Aligned_cols=189  Identities=13%  Similarity=0.116  Sum_probs=147.3

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~  202 (368)
                      +-..+.+|.-+|...+.++|+.|     |.+++|....++.+..+.  ....|+.+.|+.+|....   .||.+.+|.+.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            33456777778888888899888     999999999998888887  568899999999887665   69999999986


Q ss_pred             CCeEEEEEeccCCCeeEEEEecCCCeEEEEeec--CCCCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeC
Q 017642          203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g--~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                       .+.....+.|......+.|-..    +++..|  +.++.+.+|+.......  .-..|.+.++++++.|..++|++|+.
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence             4555556667776666666552    233323  45788888886543222  22789999999999999999999999


Q ss_pred             CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +|. |++||++..+.++.++.           +. ...++++|+..|.|+||++....-..
T Consensus      2357 ~G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred             cCc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhh
Confidence            999 99999998888766653           33 45689999999999999998875543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.16  E-value=3e-08  Score=86.06  Aligned_cols=149  Identities=12%  Similarity=-0.031  Sum_probs=113.7

Q ss_pred             CCcccccCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        76 ~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      ..+++.-.|...|....+.-+++-++.|. |+ .+-|||.++++..   .+. ..-..+.++..++++..++.+...   
T Consensus       350 ~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---r~e-~~lg~I~av~vs~dGK~~vvaNdr---  422 (668)
T COG4946         350 DGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---RIE-KDLGNIEAVKVSPDGKKVVVANDR---  422 (668)
T ss_pred             CCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---Eee-CCccceEEEEEcCCCcEEEEEcCc---
Confidence            34566678889999999999999888898 66 4999998766533   222 555678888899998877776655   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  225 (368)
                        ..|.+.|+.+|+....=+ ..+-|+.+.|+|++++++       .-..|+++|+..++....- .....-.+-+|.|+
T Consensus       423 --~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d  499 (668)
T COG4946         423 --FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPD  499 (668)
T ss_pred             --eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCC
Confidence              889999999997655444 677899999999999999       2468999999888765443 33334456789999


Q ss_pred             CCeEEEEee
Q 017642          226 VGSLVLVCP  234 (368)
Q Consensus       226 ~~~~~l~~~  234 (368)
                      ++++++.+.
T Consensus       500 ~ryLYfLs~  508 (668)
T COG4946         500 GRYLYFLSA  508 (668)
T ss_pred             CcEEEEEec
Confidence            998877653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.13  E-value=1.5e-08  Score=88.55  Aligned_cols=241  Identities=13%  Similarity=0.087  Sum_probs=162.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC----------CC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----------YP  154 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~----------~~  154 (368)
                      .-++..++|||.|++|++....+|.+|.-......  ..+   ....+..+.|+|++.+|.+-.+.+.          ..
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             CcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            34678889999999999999889999997766533  333   2335778889999999988776543          23


Q ss_pred             CCcEEEEeCCCCcEEEEEe-cCCc--ee-EEEEeeCccEEE--eCCcEEEEEcCCCeEE-EEEec-cCCCeeEEEEecCC
Q 017642          155 LNKVMIWDDHQSRCIGELS-FRSE--VR-SVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQIET-IANPKGLCAVSQGV  226 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~-~~~~--v~-~~~~~~~~~~l~--~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~  226 (368)
                      ++.+.+||+.+|..+..+. -...  .+ -+.|+.+..+++  ....++|+++ ++... ..+.. ....+....|+|.+
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~  185 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG  185 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence            3579999999999999887 3333  45 678999999998  6889999997 33221 11111 12456777888876


Q ss_pred             CeEEEEe----ecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeC-----------CCcEEEEEECCC
Q 017642          227 GSLVLVC----PGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-----------KGTLVRIFNTLD  290 (368)
Q Consensus       227 ~~~~l~~----~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-----------dg~~i~iwd~~~  290 (368)
                      ++-.+++    .+..++++++|........... -....-..+.|++.|++|+.--.           ... ++|+++..
T Consensus       186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e  264 (561)
T COG5354         186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITE  264 (561)
T ss_pred             CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeecc
Confidence            5544443    2446788888776643322211 11222246789999986654311           234 88888864


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEe--CCCeEEEEEccCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVN  335 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~  335 (368)
                      ..+.... .  ..++|.+.+|.|+++.+++.+  .+-.+-++|++..
T Consensus       265 ~~i~V~~-~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         265 RSIPVEK-D--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             cccceec-c--ccccceeeeecccCCceeEEecccccceeecccccc
Confidence            3333222 2  467999999999998766554  6777888888765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.13  E-value=1.5e-09  Score=92.08  Aligned_cols=157  Identities=13%  Similarity=0.136  Sum_probs=109.5

Q ss_pred             eEEEEeeCccEEE---eCCcEEEEEcCCC----eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee
Q 017642          179 RSVKLRRDRIIVV---LEQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (368)
Q Consensus       179 ~~~~~~~~~~~l~---~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~  251 (368)
                      ..+..++++++++   .+....++++...    +++..... ...-..+.+..+.....++-..+....+.+|.......
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            3344555666666   2344445544322    22222222 22234455666666555554444556666666554555


Q ss_pred             eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ..+-+|-..++.|+|+||+++|+++..|.. |+|-.......+..|..+ |...|..++.-+ +..|+++|.|++|++||
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~-~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTD-NYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence            667799999999999999999999999999 999888877777777765 788999999875 45689999999999999


Q ss_pred             ccCCCCCC
Q 017642          332 LKVNSGSA  339 (368)
Q Consensus       332 ~~~~~~~~  339 (368)
                      +.+++...
T Consensus       222 ~~sgk~L~  229 (390)
T KOG3914|consen  222 ITSGKLLD  229 (390)
T ss_pred             cccCCccc
Confidence            99998874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.12  E-value=2.3e-09  Score=89.11  Aligned_cols=233  Identities=12%  Similarity=0.162  Sum_probs=152.0

Q ss_pred             CCCEEEEEEcCCCC---EEEEEeCCeEEEEEecCCCcce---------------------------------EEEcccCC
Q 017642           85 PPTLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREIF---------------------------------RRDFERGG  128 (368)
Q Consensus        85 ~~~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~~~~---------------------------------~~~~~~~~  128 (368)
                      ...|+.+.|.+++.   +|+++.|.+|++|.+.......                                 .+.+.+.|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            45789999998865   5666669999999885322211                                 12233678


Q ss_pred             ceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC-cEE--EEEe------cCCceeEEEEeeCccEEE----eCCc
Q 017642          129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCI--GELS------FRSEVRSVKLRRDRIIVV----LEQK  195 (368)
Q Consensus       129 ~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~-~~~--~~~~------~~~~v~~~~~~~~~~~l~----~d~~  195 (368)
                      ...+.++.++.+...+.++++      =.|.+|+++-- +..  ..++      ...-|++..|+|..-.++    +.|+
T Consensus       164 tyhiNSIS~NsD~Et~lSADd------LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSADD------LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             eeEeeeeeecCccceEeeccc------eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence            888889999999999988875      68999997632 221  1222      234578888999654333    5899


Q ss_pred             EEEEEcCCCeE----EEEEecc------------CCCeeEEEEecCCCeEEEEeecCCC-CeEEEEecCc--ceeeeeec
Q 017642          196 IFVYNFADLKL----LHQIETI------------ANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS--KRTKFIMA  256 (368)
Q Consensus       196 i~vwd~~~~~~----~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~--~~~~~~~~  256 (368)
                      |++-|++...+    .+.+...            -..|..+.|+.+|++  +++   .| -+|++|+.+.  +++.++..
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry--ils---RDyltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY--ILS---RDYLTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE--EEE---eccceeEEEeccccCCcceEEee
Confidence            99999984321    1111111            124567899999985  433   34 6888998754  55566555


Q ss_pred             cCc------------c---eEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee--------------------EeeEecc
Q 017642          257 HDS------------R---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--------------------QEVRRGA  301 (368)
Q Consensus       257 ~~~------------~---i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~--------------------~~~~~~~  301 (368)
                      |..            .   -..++|+.++.+++||+.... .+++++..|...                    ....++.
T Consensus       313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~-frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~  391 (433)
T KOG1354|consen  313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNV-FRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGK  391 (433)
T ss_pred             hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccce-EEEecCCCCcceeecccccccCCcccccccceeeecCCC
Confidence            532            1   245789999999999999998 999996544211                    0000110


Q ss_pred             C------------cccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642          302 D------------RAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       302 ~------------~~~v~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                      +            ...+...+|+|..+.+|.+..++ ++||
T Consensus       392 r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  392 RKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             ccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            1            12355678899888888776554 6665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=1.9e-09  Score=97.79  Aligned_cols=226  Identities=15%  Similarity=0.166  Sum_probs=160.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-------------ceEEEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-------------IFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  150 (368)
                      .....|++|+.+..++|+|+ |+-++|..+.+...             ...+.++ +|...|.-+.|+.+...+.+.+.+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCCC
Confidence            45789999999999999999 77799988764322             1223454 899999999999999999998887


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  224 (368)
                           |-|.+|-+-.|....++.   .++-|.+++|+.||..++   .||.|.+=.+. |..+.--.........+.|++
T Consensus        93 -----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~  166 (1189)
T KOG2041|consen   93 -----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSE  166 (1189)
T ss_pred             -----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecc
Confidence                 999999988876544432   567799999999998776   69999888774 333322111222334688999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecCcceeeee------------eccCcceEEEEEC--------CCCCEEEEEeCCCcEEE
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYASKRTKFI------------MAHDSRIACFALT--------QDGQLLATSSTKGTLVR  284 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~------------~~~~~~i~~v~~s--------p~g~~l~s~~~dg~~i~  284 (368)
                      |.+..++   +-.+|.+.+++..+.....+            ......|..+.|.        ||...|+.+-.+|. +.
T Consensus       167 D~~~~Lf---~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr-~Q  242 (1189)
T KOG2041|consen  167 DLEQALF---KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR-MQ  242 (1189)
T ss_pred             cHHHHHh---hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-eh
Confidence            9875433   44688999977665321111            1122235556663        46779999999999 88


Q ss_pred             EEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC
Q 017642          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK  324 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d  324 (368)
                      |..-.+......+..   .-.|..+.|+++|..|++++.|
T Consensus       243 iMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence            876544433334443   3478899999999999998765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=2.6e-08  Score=87.93  Aligned_cols=238  Identities=16%  Similarity=0.189  Sum_probs=151.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC------CCCcEEEE
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY------PLNKVMIW  161 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~------~~~~i~vw  161 (368)
                      -+.+.|||.|.||++-...||.+|--......  +.|.  | ..+.-+.|+|+..+|++-+..+.-      ....+.||
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~--H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY--H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc--C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            46789999999999999999999975554444  3453  2 235556778877777776544332      23689999


Q ss_pred             eCCCCcEEEEEec---CCcee-EEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          162 DDHQSRCIGELSF---RSEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       162 d~~~~~~~~~~~~---~~~v~-~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      |+.+|...+.+..   ...++ -+.||.|+++++  ....|.||+..+..++..-...-..|....|+|.+.-+..-+..
T Consensus       288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            9999998888872   22333 457999999999  57899999987755443333344567778899987632222211


Q ss_pred             CCC--CeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeC----------CCcEEEEEECCCCce-eEeeEecc
Q 017642          236 LQK--GQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST----------KGTLVRIFNTLDGTL-LQEVRRGA  301 (368)
Q Consensus       236 ~~d--g~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~----------dg~~i~iwd~~~~~~-~~~~~~~~  301 (368)
                      ..+  ..+.+ -....+.++...-|.-.-..+.|..+|.+|+.--.          -.. +.|+.++.... +..+.   
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve---  443 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE---  443 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee---
Confidence            111  12222 22233344443333333345677788888875321          113 66777665443 22233   


Q ss_pred             CcccEEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKV  334 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~  334 (368)
                      -...|...+|-|.|..+++-+.   ..++.+|.+++
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            3457999999999987765542   45799999986

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=4.6e-08  Score=88.62  Aligned_cols=200  Identities=10%  Similarity=-0.014  Sum_probs=117.7

Q ss_pred             CEEEEEEcCCCCE-EEEEe-CC-e--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE-ecCCCCCCCCCcEEE
Q 017642           87 TLLHISFNQDHGC-FAAGT-DH-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNKVMI  160 (368)
Q Consensus        87 ~v~~~~~s~~g~~-l~~~~-d~-~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~~~~~~i~v  160 (368)
                      .+....|+|||+. ++..+ ++ .  |.++|+.+++......    .........|++++..++ +...+   .+..|.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~---g~~~Iy~  261 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPK---GQPDIYL  261 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECCCCCEEEEEEccC---CCcEEEE
Confidence            6778999999985 66544 42 2  8888887665543322    222233455677664332 22211   1267999


Q ss_pred             EeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCC----cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      +|+.+++......+........|+|||+.++  .+.    .|+++|+.+++..+......   ....|+|||+.++++..
T Consensus       262 ~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        262 YDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             EECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEc
Confidence            9988876443333444345668999998777  332    79999998877644332211   12489999998666542


Q ss_pred             cCC-----C-CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeE
Q 017642          235 GLQ-----K-GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       235 g~~-----d-g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~  298 (368)
                      ...     . ..|.+.+..+.....+.... ......|+|||+.|+....++.  .|.+.++. |.....+.
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~  408 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFP  408 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEee
Confidence            211     1 35666555555555554432 2346889999997776655432  15566663 33333444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.10  E-value=2.8e-07  Score=77.63  Aligned_cols=235  Identities=17%  Similarity=0.166  Sum_probs=152.6

Q ss_pred             CEEEEEEcC-CCCEEEEEe-CCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQ-DHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~-~g~~l~~~~-d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ....++.+| ++..++.+. -+. ..+||..+++......-. ......-.-.|++++..+++...|..-..|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            455678888 455667777 444 888998877765432221 2222233457888988888877765555689999999


Q ss_pred             C-CCcEEEEEe-cCCceeEEEEeeCccEEE-e--------------------CCcEEEEEcCCCeEEEEEe----ccCCC
Q 017642          164 H-QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--------------------EQKIFVYNFADLKLLHQIE----TIANP  216 (368)
Q Consensus       164 ~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--------------------d~~i~vwd~~~~~~~~~~~----~~~~~  216 (368)
                      . +.+.+.++. +.-.-..+.+.||+..++ .                    +-.+...|.++|+.+....    .|...
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 667888887 777788899999995554 2                    2245566777888776643    25567


Q ss_pred             eeEEEEecCCCeEEEEeecCCCC-------eEEEEecCcceeeee-------eccCcceEEEEECCCCCEEEEEeCCCcE
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYASKRTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTL  282 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg-------~i~i~~~~~~~~~~~-------~~~~~~i~~v~~sp~g~~l~s~~~dg~~  282 (368)
                      +..+++..+|.   +++..-..|       .+.++..... +..+       ..-.+.|-+|+++.+|.++++.+-.|..
T Consensus       165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            88888888875   222111111       1222322221 2222       2345689999999999988777766655


Q ss_pred             EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +.+||..+++.+.....    ..+..++-.+++ ++++.+ .|.  ++.+..
T Consensus       241 ~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~--~~~~~~  284 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQ--LIRLSP  284 (305)
T ss_pred             EEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-Ccc--EEEccC
Confidence            99999999999877654    246777777766 565544 443  444443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.09  E-value=7.1e-08  Score=84.46  Aligned_cols=237  Identities=9%  Similarity=0.103  Sum_probs=155.5

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe--EEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      -+.|+-+.+++|--..+.++|+++. .... ...+..-....+..+.++|.+  ..++.-.-...-.++.+++|.+..+.
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~t-~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s  213 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEIT-DNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS  213 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEecC-Cccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence            4667777776655545568888862 2111 111211234567777777752  12222111111123789999998777


Q ss_pred             EEEEEe-cCCceeEEEEeeCccEEE--------------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          168 CIGELS-FRSEVRSVKLRRDRIIVV--------------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       168 ~~~~~~-~~~~v~~~~~~~~~~~l~--------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      .+.+-. ..-.=..+.|++.|.+++              ....++|++++...+ .......++|...+|.|.++.+.++
T Consensus       214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi  292 (561)
T COG5354         214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVI  292 (561)
T ss_pred             eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEE
Confidence            766655 444456788888887776              135788999874433 3332557899999999999997776


Q ss_pred             eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeE-eeEeccCcccEEE
Q 017642          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQ-EVRRGADRAEIYS  308 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~-~~~~~~~~~~v~~  308 (368)
                      + |..+-.+.+.+..+.....+.  ...=..+.|+|.+++++.++-|   |. |.+||......+. .+.+    ....-
T Consensus       293 ~-g~~pa~~s~~~lr~Nl~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~  364 (561)
T COG5354         293 S-GYMPASVSVFDLRGNLRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY  364 (561)
T ss_pred             e-cccccceeecccccceEEecC--CcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence            5 888888988888877544333  3344678899999998887665   57 9999976654443 4443    23456


Q ss_pred             EEEecCCCEEEEEe------CCCeEEEEEccCCCC
Q 017642          309 LAFSSNAQWLAVSS------DKGTVHVFNLKVNSG  337 (368)
Q Consensus       309 l~~sp~~~~l~s~s------~dg~i~iwd~~~~~~  337 (368)
                      +.|+||++++.+..      .|..|.|||+....-
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            78999999887663      377899999976543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.09  E-value=1.3e-06  Score=73.94  Aligned_cols=211  Identities=14%  Similarity=0.086  Sum_probs=135.7

Q ss_pred             EEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe-CCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           90 HISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        90 ~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      ++.|.+ +|.++++.. .+.|..|+........ ..+  ..   ...+.+. +++.++++..       +.+.++|..++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence            568888 566666655 6668888876544332 222  22   5566666 6677776665       56777799888


Q ss_pred             cEEEEEec------CCceeEEEEeeCccEEEe---------C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          167 RCIGELSF------RSEVRSVKLRRDRIIVVL---------E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       167 ~~~~~~~~------~~~v~~~~~~~~~~~l~~---------d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      +.......      ....+.+++.++|.+.+.         .  |.|+.++.. ++...... .....+.++|+++++.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence            65444432      346788999999987772         1  568888876 55444443 34456789999999987


Q ss_pred             EEEeecCCCCeEEEEecC--cc---eeeee---eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          230 VLVCPGLQKGQVRVEHYA--SK---RTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~--~~---~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      +++-  +..+.|..++..  ..   ....+   ....+....+++..+|++.++....+. |.++|.. |+.+..+... 
T Consensus       149 yv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p-  223 (246)
T PF08450_consen  149 YVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP-  223 (246)
T ss_dssp             EEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S-
T ss_pred             eecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC-
Confidence            6653  456666664432  22   11122   222234788999999998887777788 9999976 9988888864 


Q ss_pred             CcccEEEEEEe-cCCCEEEEE
Q 017642          302 DRAEIYSLAFS-SNAQWLAVS  321 (368)
Q Consensus       302 ~~~~v~~l~~s-p~~~~l~s~  321 (368)
                       ...+++++|. ++.+.|+..
T Consensus       224 -~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  224 -VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             -SSSEEEEEEESTTSSEEEEE
T ss_pred             -CCCEEEEEEECCCCCEEEEE
Confidence             3479999995 666665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.07  E-value=2.1e-07  Score=91.88  Aligned_cols=254  Identities=10%  Similarity=0.092  Sum_probs=154.5

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE----Eec--------C-CCcc--------eEEEcc----c----
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIY----NCD--------P-FREI--------FRRDFE----R----  126 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw----~~~--------~-~~~~--------~~~~~~----~----  126 (368)
                      .......-+..|.+++||||+.+|+..+ ++.+.+-    +.-        . +...        ...+|.    .    
T Consensus       112 ~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~  191 (928)
T PF04762_consen  112 EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR  191 (928)
T ss_pred             eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhh
Confidence            3344556678999999999999998888 6665443    220        0 0000        000110    0    


Q ss_pred             ---C------------CceeEEEEEEeCCeEEEEecCCCCCCC-CCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccE
Q 017642          127 ---G------------GGIGVVEMLFRCNILALVGGGPDPQYP-LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII  189 (368)
Q Consensus       127 ---~------------~~~~~~~~~~~~~~~~~~s~~~d~~~~-~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  189 (368)
                         .            ....-..++|.+++.+++...-++.-. ...|+||+ ++|+...+-+ ..+--.+++|.|.|.+
T Consensus       192 ~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~l  270 (928)
T PF04762_consen  192 QLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNL  270 (928)
T ss_pred             hccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCE
Confidence               0            122456778888888877655421111 26899999 5576554444 4444567899999999


Q ss_pred             EEe------CCcEEEEEcCCCeEEEEEec----cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce---eeeee-
Q 017642          190 VVL------EQKIFVYNFADLKLLHQIET----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIM-  255 (368)
Q Consensus       190 l~~------d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~-  255 (368)
                      ++.      ...|.+|. ++|-....|..    ....+..+.|+.|++-+.+..    ...|.+|......   .+.+. 
T Consensus       271 IA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~  345 (928)
T PF04762_consen  271 IASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRF  345 (928)
T ss_pred             EEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEc
Confidence            991      34566676 56655555533    345688899999998655543    3348888776522   22222 


Q ss_pred             ccCcceEEEEECCCCC-EEEEEeCCCcEEEEEEC----CCCc--------eeEeeEe---------------------cc
Q 017642          256 AHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNT----LDGT--------LLQEVRR---------------------GA  301 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~----~~~~--------~~~~~~~---------------------~~  301 (368)
                      .....+..+.|+|... .|...+.+|. +..++.    ..+.        .+..+.+                     -.
T Consensus       346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~  424 (928)
T PF04762_consen  346 SSSESVNFVKWDPEKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE  424 (928)
T ss_pred             cCCCCCCceEECCCCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc
Confidence            1223355599999544 5666666566 555433    2110        1111111                     01


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      -...|.+++|++++..+++-..||.|.+|.......
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~  460 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNM  460 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCc
Confidence            246899999999998899999999999999766543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.06  E-value=7.3e-07  Score=73.03  Aligned_cols=228  Identities=11%  Similarity=0.119  Sum_probs=132.9

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      .++.+.+|++||+-.|..|.|-.....=..  ....+.....-.-..++|++++..++.+...     |+|+++|+.. .
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~   75 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-S   75 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-c
Confidence            356789999999999999888876432211  1122322344456678999999988887776     9999999764 3


Q ss_pred             EEEEEe--------cCCceeEEEEeeCc-------cEEE--eCCcEEEEEcCC-----CeEEEEEec---cCCCeeEEEE
Q 017642          168 CIGELS--------FRSEVRSVKLRRDR-------IIVV--LEQKIFVYNFAD-----LKLLHQIET---IANPKGLCAV  222 (368)
Q Consensus       168 ~~~~~~--------~~~~v~~~~~~~~~-------~~l~--~d~~i~vwd~~~-----~~~~~~~~~---~~~~v~~~~~  222 (368)
                      .+..+.        ....|..+.|.+..       .+++  .+|.++-|-+..     .+..+.+..   ....|.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            333332        23566777775532       3333  577777776532     334444432   3567888999


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCE--EEEEeCCCcE-----EEEEECCCCceeE
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL--LATSSTKGTL-----VRIFNTLDGTLLQ  295 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~--l~s~~~dg~~-----i~iwd~~~~~~~~  295 (368)
                      +|..+- +++ +|.....-..+          ++....+++-..-.+..+  .++..+|+..     -.+|.+-+.+...
T Consensus       156 ~p~h~L-LlV-gG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs  223 (282)
T PF15492_consen  156 HPKHRL-LLV-GGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS  223 (282)
T ss_pred             cCCCCE-EEE-eccCCCCCccc----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence            888763 333 35544421111          111222332222212211  1222222210     1344433322211


Q ss_pred             eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                       .. ......|..|..||||+.||+...+|.|.+|++..-+.
T Consensus       224 -~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  224 -RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             -cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence             11 11456899999999999999999999999999976544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.04  E-value=4.6e-07  Score=76.43  Aligned_cols=217  Identities=14%  Similarity=0.109  Sum_probs=135.3

Q ss_pred             EEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceE--EEcccCCc--------eeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           89 LHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFR--RDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        89 ~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ..++++++|++|+++.  -+.|.++-+........  ..+.|...        ..+....+.|++.++++.+-.    -.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----~D  167 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----TD  167 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----Cc
Confidence            7899999999999998  44599999865432211  12211111        115566677877665554321    14


Q ss_pred             cEEEEeCCCCcEEE----EEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCC-e---EEEEEec------cCCCee
Q 017642          157 KVMIWDDHQSRCIG----ELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-K---LLHQIET------IANPKG  218 (368)
Q Consensus       157 ~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~-~---~~~~~~~------~~~~v~  218 (368)
                      .|.+|++.+|+...    .++....-+.|.|+|+++++.    .+++|.+|..... .   .++.+..      ......
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a  247 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA  247 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence            79999999875432    234667889999999999876    6999999998763 2   2333221      223456


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEe--cCcceeee---eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC--CC
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEH--YASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DG  291 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~~~~~~~---~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~--~~  291 (368)
                      .+.+++||+.+++. .-..| .|.++.  ..+..+..   ...+....+...|++.|++|+++.+++..|.+|.+.  +|
T Consensus       248 aIhis~dGrFLYas-NRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         248 AIHISPDGRFLYAS-NRGHD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             EEEECCCCCEEEEe-cCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            78899999975543 22223 454432  23333322   233445578899999999999999877558898765  44


Q ss_pred             ceeEeeEeccCcccEEEEEEe
Q 017642          292 TLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~s  312 (368)
                      ++-...... ......||.|.
T Consensus       326 ~L~~~~~~~-~~p~Pvcv~f~  345 (346)
T COG2706         326 RLTLLGRYA-VVPEPVCVKFL  345 (346)
T ss_pred             eEEeccccc-CCCCcEEEEEc
Confidence            443322211 23345566664

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=1.9e-07  Score=81.24  Aligned_cols=144  Identities=12%  Similarity=0.181  Sum_probs=114.1

Q ss_pred             CccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC-eEEEEecCcceeeeeeccCcceE
Q 017642          186 DRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKRTKFIMAHDSRIA  262 (368)
Q Consensus       186 ~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg-~i~i~~~~~~~~~~~~~~~~~i~  262 (368)
                      +|.+++  +-|...+.+...+-.++.  ++.+.|.-..+..+++..++   |..|| .+-|++..+..++.+...-+.|.
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vi---gt~dgD~l~iyd~~~~e~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVI---GTNDGDKLGIYDKDGGEVKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEE---eccCCceEEEEecCCceEEEeeCCccceE
Confidence            455555  788999888766655543  45667887888888876444   55788 77789999999999998889999


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC----eEEEEEccCCCC
Q 017642          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSG  337 (368)
Q Consensus       263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----~i~iwd~~~~~~  337 (368)
                      ++..+++|++++.+..... |.+.|+.+|.....-+.  ..+-|+.++|+|+++++|-+--+|    .|+++|+..++-
T Consensus       406 av~vs~dGK~~vvaNdr~e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         406 AVKVSPDGKKVVVANDRFE-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEEcCCCcEEEEEcCceE-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            9999999999999888887 99999999987644333  567899999999999999775544    689999887654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=2.2e-09  Score=106.22  Aligned_cols=193  Identities=13%  Similarity=0.211  Sum_probs=146.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .|-..|.++.=+|...+.++|+ |+.|++|....++.+.....  .+...+..+.|+.+|..+..+..|     |.|.+|
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~l~ 2278 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGD-----GDLSLW 2278 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec--cCcchhhhhhhcccCCceeeeccC-----Cceeec
Confidence            4455788888889888888888 88899999987777655443  455888889998888777777776     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCC--C-eEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD--L-KLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      .+. .++....+ |.....++.|-..+..-+    .++.+.+||..-  + .++.  ..|.+.++++++.|...  +++ 
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--lli- 2352 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LLI- 2352 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EEE-
Confidence            976 56666666 888888888877333333    478999999732  2 2333  67899999999999876  333 


Q ss_pred             ecCCCCeEEEEecCcceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          234 PGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +|+.+|.|++|+...+.+. ++..         ++ ...++++|+..|. |+||++.....++.+..
T Consensus      2353 sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            5899999999988765543 2332         44 4568999999999 99999998888877764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=9.6e-08  Score=84.52  Aligned_cols=236  Identities=11%  Similarity=0.164  Sum_probs=150.7

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~  169 (368)
                      -..||.|++++|--..++|.||+.......-.+.+   ...++..+.|+|...+++.-.....-....+.+..+.+++.+
T Consensus       310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i  386 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI  386 (698)
T ss_pred             eEEeccCCceeEEeccceEEEEecCceeeeccccc---CCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence            36899999999988888999999766444333333   344567788888776666543321122246777777777777


Q ss_pred             EEEe-cCCceeEEEEeeCccEEE--eC--------C---cEEEEEcCCCeE-EEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          170 GELS-FRSEVRSVKLRRDRIIVV--LE--------Q---KIFVYNFADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       170 ~~~~-~~~~v~~~~~~~~~~~l~--~d--------~---~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      ++-. +.-.=..+-|..+|.+|+  .|        |   .+.|+.++.... +..+ .....+-..+|-|.|+.+.++..
T Consensus       387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g  465 (698)
T KOG2314|consen  387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISG  465 (698)
T ss_pred             eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEc
Confidence            7655 443344567888888887  11        1   344555544332 2222 23456777899999999877763


Q ss_pred             cCCCCeEEEEecCc-----ceeeeeeccCcceEEEEECCCCCEEEEEe---CCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          235 GLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       235 g~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      -....++.++....     ..+..+..  ...+.+.|+|.|++++.+.   ..|. +.++|+.-......-.. .| ...
T Consensus       466 ~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~~~~~-eh-~~a  540 (698)
T KOG2314|consen  466 NTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKDTASP-EH-FAA  540 (698)
T ss_pred             cccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhhccCc-cc-ccc
Confidence            33345566655442     22223332  4568899999999887664   4677 99999874332222111 13 356


Q ss_pred             EEEEEecCCCEEEEEeC------CCeEEEEEccC
Q 017642          307 YSLAFSSNAQWLAVSSD------KGTVHVFNLKV  334 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~------dg~i~iwd~~~  334 (368)
                      +.+.|.|.|+|+++++.      |.--+||+++-
T Consensus       541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            78999999999998864      44567888754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.02  E-value=9.4e-08  Score=78.10  Aligned_cols=180  Identities=11%  Similarity=0.126  Sum_probs=120.6

Q ss_pred             CcEEEEeCCCCcEEE--EEe--cCCceeEEEEee---CccE-EE---eCCcEEEEEcCCCeEEEEEeccCC------Cee
Q 017642          156 NKVMIWDDHQSRCIG--ELS--FRSEVRSVKLRR---DRII-VV---LEQKIFVYNFADLKLLHQIETIAN------PKG  218 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~--~~~--~~~~v~~~~~~~---~~~~-l~---~d~~i~vwd~~~~~~~~~~~~~~~------~v~  218 (368)
                      |.+.+|++.+.+.+.  +++  ....+..|.|..   +|.+ ++   ..|.|.++..........+.+-..      ..-
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            678888877654333  232  455667777764   3442 22   578888888754443333332111      123


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEE-EecCc--ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECC-CCce
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRV-EHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTL-DGTL  293 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~--~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~-~~~~  293 (368)
                      ++.|++.+..+++   +..+|.+.+ +....  +.++.++.|.-++....|+... +++.+|++|+. +..||++ .++.
T Consensus       126 slD~~~~~~~i~v---s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~  201 (339)
T KOG0280|consen  126 SLDISTSGTKIFV---SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTF  201 (339)
T ss_pred             EEEeeccCceEEE---EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcce
Confidence            5677777776332   456788875 33332  4555789999999999998644 58999999999 9999999 3444


Q ss_pred             eEe-eEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEEEcc-CCCCCCCC
Q 017642          294 LQE-VRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLK-VNSGSARS  341 (368)
Q Consensus       294 ~~~-~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~-~~~~~~~~  341 (368)
                      +.. .+.  |...|.+|.-+| .+.++++|+.|..|++||.+ -+++....
T Consensus       202 i~~n~kv--H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~  250 (339)
T KOG0280|consen  202 IWHNSKV--HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA  250 (339)
T ss_pred             eeeccee--eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence            433 333  778899998875 57799999999999999998 45555443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.98  E-value=1.8e-07  Score=75.50  Aligned_cols=236  Identities=13%  Similarity=0.091  Sum_probs=137.3

Q ss_pred             EEEEcCC-----CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           90 HISFNQD-----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        90 ~~~~s~~-----g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      .+.|-|-     ..+||.|+ .+...+|...+.+......-.+...+.+. ..+-..-.+.+++  .|     .++++.+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s--nd-----ht~k~~~  144 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS--ND-----HTGKTMV  144 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc--CC-----cceeEEE
Confidence            3556552     34777776 66699999886655432211111111111 1111222233333  33     6777777


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC-CeEEEEE--eccCCCeeEEEEecCCCeEEEEeec
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      +.-+....... ..-.+.++.+++|+++++   ....|..|.+.. ++.+..+  ....+.-.+..|+.....  +|+ +
T Consensus       145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~--FAv-~  221 (344)
T KOG4532|consen  145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ--FAV-V  221 (344)
T ss_pred             EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce--EEE-E
Confidence            65443322222 113388999999999988   346888898843 3332222  222333445666665554  443 6


Q ss_pred             CCCCeEEEEecCcce------eeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEEEECCCCceeEeeEecc-----C
Q 017642          236 LQKGQVRVEHYASKR------TKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----D  302 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~------~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----~  302 (368)
                      .+||.+.||+.....      ..+-..|.+.++.+.|++-|.  +|+..-.-+. +.+.|+++++..+.+....     |
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~  300 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKH  300 (344)
T ss_pred             ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCccccccc
Confidence            799999998866421      122335899999999998665  4554444556 9999999987665544321     1


Q ss_pred             -cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          303 -RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       303 -~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                       ...|..-.|+.++.-+.+.+++. +.=|++....+
T Consensus       301 ~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR  335 (344)
T KOG4532|consen  301 NTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR  335 (344)
T ss_pred             cccccccccccCCCcccccccchh-hheeeccccce
Confidence             23477778887777666665553 55666665544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.98  E-value=1.5e-06  Score=73.03  Aligned_cols=215  Identities=17%  Similarity=0.168  Sum_probs=127.9

Q ss_pred             CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEE
Q 017642          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL  183 (368)
Q Consensus       105 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~  183 (368)
                      ++.|..||..+++......+. ........... ..+.+++.+..       +.|..||..+|+.+..+...+.+.....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPISGAPV   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGGSGEE
T ss_pred             CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeeccccccceee
Confidence            455778888777777666653 21222222233 44444444322       8999999999999988885544433334


Q ss_pred             eeCccEEE--eCCcEEEEEcCCCeEEEEE-eccCC---CeeEEEEecCCCeEEEEeecCCCCeEEEEe-cCcceeeeeec
Q 017642          184 RRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMA  256 (368)
Q Consensus       184 ~~~~~~l~--~d~~i~vwd~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~  256 (368)
                      ..++.+++  .++.|+.+|.++|+.+... .....   .........+++.+++.   ..++.|...+ .+++.+.....
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG---TSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE---ETCSEEEEEETTTTEEEEEEES
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE---eccCcEEEEecCCCcEEEEeec
Confidence            44555554  4789999999999998884 32211   11222333336554433   2477787744 55666555544


Q ss_pred             cCcc----------eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe
Q 017642          257 HDSR----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (368)
Q Consensus       257 ~~~~----------i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  326 (368)
                      ....          +..-....++ .++.++.++..+.+ |+.+++.+....    ...+.. ....++..|+.++.++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC----SS-ECE-CEECCCTEEEEEETTTE
T ss_pred             CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec----CCCccC-CceeeCCEEEEEeCCCE
Confidence            3211          1222222345 67777777752555 999999664222    112222 14567788888889999


Q ss_pred             EEEEEccCCCC
Q 017642          327 VHVFNLKVNSG  337 (368)
Q Consensus       327 i~iwd~~~~~~  337 (368)
                      |..||+++++.
T Consensus       224 l~~~d~~tG~~  234 (238)
T PF13360_consen  224 LYALDLKTGKV  234 (238)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCCE
Confidence            99999999864

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=1.8e-06  Score=75.46  Aligned_cols=219  Identities=11%  Similarity=0.100  Sum_probs=126.4

Q ss_pred             CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC--------CCCCCCCCcEEEEeCCCCcEEEEEecCCc
Q 017642          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG--------PDPQYPLNKVMIWDDHQSRCIGELSFRSE  177 (368)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------~d~~~~~~~i~vwd~~~~~~~~~~~~~~~  177 (368)
                      +.|.+.|.++.+..-....  +..-... ++.+...++++...        ++     ..|.+||..+.+.+.++.....
T Consensus        27 ~~v~ViD~~~~~v~g~i~~--G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~-----d~V~v~D~~t~~~~~~i~~p~~   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG--GFLPNPV-VASDGSFFAHASTVYSRIARGKRT-----DYVEVIDPQTHLPIADIELPEG   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc--cCCCcee-ECCCCCEEEEEeccccccccCCCC-----CEEEEEECccCcEEeEEccCCC
Confidence            5699999887665533332  2222222 33333444444441        23     7999999999999999874333


Q ss_pred             --------eeEEEEeeCccEEE----e-CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-
Q 017642          178 --------VRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-  243 (368)
Q Consensus       178 --------v~~~~~~~~~~~l~----~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-  243 (368)
                              ...+++++||+++.    . +..|.+.|+.+++.+.++.... .......+.+. . .+.|   .||.... 
T Consensus        99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~-~~~~---~Dg~~~~v  172 (352)
T TIGR02658        99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-F-FMHC---RDGSLAKV  172 (352)
T ss_pred             chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-c-EEEe---ecCceEEE
Confidence                    34889999998877    3 7899999999999998887533 22222222221 1 1222   2333322 


Q ss_pred             -EecCccee-e---eeeccCcceE-EEEECC-CCCEEEEEeCCCcEEEEEECCCC-----ceeEeeEe-----ccCcccE
Q 017642          244 -EHYASKRT-K---FIMAHDSRIA-CFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----TLLQEVRR-----GADRAEI  306 (368)
Q Consensus       244 -~~~~~~~~-~---~~~~~~~~i~-~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~-----~~~~~~~~-----~~~~~~v  306 (368)
                       .+.+++.. .   .+.....++. .-.|.+ +|+++....+ |. |.+.|+...     +.+..+..     +...+.+
T Consensus       173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcc
Confidence             22222111 1   1111001100 003455 8888777776 88 999996432     33322211     1234455


Q ss_pred             EEEEEecCCCEEEEEe----------CCCeEEEEEccCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSS----------DKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s----------~dg~i~iwd~~~~~~~~~  340 (368)
                      .-++++++++.+++..          ..+.|.++|..+++....
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~  294 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK  294 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE
Confidence            5699999999887743          125799999998877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.8e-08  Score=86.82  Aligned_cols=247  Identities=16%  Similarity=0.087  Sum_probs=169.4

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCC-CCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~  156 (368)
                      .+-.|.+.|+.+.-+ ..+++.+++ |+.++.|.-.. ....+.+.+. .|-..+.+++.+-++..+.+.+. |     .
T Consensus         4 ksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~D-----h   76 (558)
T KOG0882|consen    4 KSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPD-----H   76 (558)
T ss_pred             hhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcc-----c
Confidence            445788888887654 466888888 99999998554 2233334443 67777778888888888888666 6     9


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEe-eCc----cEEE---eCCcEEEEEcCCCe--EEEEEeccCCCeeEEEEecCC
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLR-RDR----IIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~----~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      .++++|+++-..+..++...--..+.|. ..|    .+.+   .++.|.++|-....  ....-..|..+|.++.+.+.+
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence            9999999877665444422222222222 122    1222   47899999975433  223335688899999999999


Q ss_pred             CeEEEEeecCCCCeEEEEecCc-----ce-e----------eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          227 GSLVLVCPGLQKGQVRVEHYAS-----KR-T----------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~-----~~-~----------~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      +..+   +....|.|.-|...+     +. +          ..+........++.|+|+|..+.+-+.|.. |++++.++
T Consensus       157 Ds~v---SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~Kt  232 (558)
T KOG0882|consen  157 DSAV---SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKT  232 (558)
T ss_pred             ccee---eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEecc
Confidence            8522   455678999998774     10 0          112233456789999999999999999999 99999998


Q ss_pred             CceeEeeEe-------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          291 GTLLQEVRR-------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       291 ~~~~~~~~~-------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |+.++.+..                               ......-..+.|...|++|+-++-=| |+|.++.++.-.
T Consensus       233 GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  233 GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence            876655432                               00112345678888999999988776 999999887543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=1.7e-09  Score=95.40  Aligned_cols=199  Identities=16%  Similarity=0.205  Sum_probs=137.0

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-------CcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIF  197 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~  197 (368)
                      +|...+..+.--.+..-+++++.|     ++|++|.++.       ..+..+++ |+.+|.++.|-.+.++++ .||.|+
T Consensus       733 GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            666666666655666667788887     9999998763       23556666 999999999999999998 799999


Q ss_pred             EEEcCCCeEEEEEe--ccCCCeeEEEEecC-CCeEEEEeecCCCCeEEEE-ecCcceeeeee-----ccCcceEEEEECC
Q 017642          198 VYNFADLKLLHQIE--TIANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVE-HYASKRTKFIM-----AHDSRIACFALTQ  268 (368)
Q Consensus       198 vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~l~~~g~~dg~i~i~-~~~~~~~~~~~-----~~~~~i~~v~~sp  268 (368)
                      +||.--++.+..+.  ...+.++.+..-++ .+.++++ .++...+|++. .+..+-...++     +...-+++++..+
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA-gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA-GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcchheee-eccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            99987776655332  12233333433344 3343443 34678889984 44444333333     3445689999999


Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE-EEccCC
Q 017642          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV-FNLKVN  335 (368)
Q Consensus       269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i-wd~~~~  335 (368)
                      .|+.|+.+-.+|. |.+.|.++|+.+...+.  .......++ .|..+.|+....|.++.| |...++
T Consensus       887 ~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  887 KGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             CcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            9999999999999 99999999998877765  233333333 255566666666777777 765443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=8.1e-08  Score=79.12  Aligned_cols=239  Identities=11%  Similarity=0.231  Sum_probs=144.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCe-EEEEEecCCCcc-e--EEEcccCC------------ceeEEEEEEe--C-CeEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI-F--RRDFERGG------------GIGVVEMLFR--C-NILA  143 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~-i~iw~~~~~~~~-~--~~~~~~~~------------~~~~~~~~~~--~-~~~~  143 (368)
                      ...+.|+++.|...|.+|++|..++ |.+|.-+..... .  ...|+ .|            ...+..+.|-  . ...+
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            3456899999999999999999555 888876543311 1  11121 11            1123333332  2 3344


Q ss_pred             EEecCCCCCCCCCcEEEEeCCCCc------------------------------------------EEEEE-e-cCCcee
Q 017642          144 LVGGGPDPQYPLNKVMIWDDHQSR------------------------------------------CIGEL-S-FRSEVR  179 (368)
Q Consensus       144 ~~s~~~d~~~~~~~i~vwd~~~~~------------------------------------------~~~~~-~-~~~~v~  179 (368)
                      ++++.+      .+|++|.+....                                          +.+.+ . |...|.
T Consensus       103 LlstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170         103 LLSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             EEecCC------ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence            555443      899999764320                                          00111 1 566788


Q ss_pred             EEEEeeCccEEE--eCCcEEEEEcCCCe---EEEEEeccC-----CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc
Q 017642          180 SVKLRRDRIIVV--LEQKIFVYNFADLK---LLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK  249 (368)
Q Consensus       180 ~~~~~~~~~~l~--~d~~i~vwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~  249 (368)
                      ++.++.|...++  .|-.|.+|+++-..   .+..++.|.     .-|++..|+|....++..+  +..|.|++.+....
T Consensus       177 SiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~  254 (460)
T COG5170         177 SISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhh
Confidence            899998877776  46689999985321   122222222     2467788998876655443  46899999443321


Q ss_pred             e-----ee------------eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-ceeEeeEecc----------
Q 017642          250 R-----TK------------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGA----------  301 (368)
Q Consensus       250 ~-----~~------------~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-~~~~~~~~~~----------  301 (368)
                      .     .+            -+..-...|..+.|+++|+++++-+.- + |+|||++.. .++.++..+.          
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~l~d~Y  332 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDELNDVY  332 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHHHHhhh
Confidence            1     01            112223468889999999998876654 4 999998754 4555554310          


Q ss_pred             CcccE---EEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          302 DRAEI---YSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       302 ~~~~v---~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      ....|   ..+.||-|.+.+++|+..+..-+|-+
T Consensus       333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             hccceeeeEEEEecCCcccccccccccceeeecc
Confidence            11223   35788888888888887766666653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.93  E-value=6.5e-06  Score=69.61  Aligned_cols=193  Identities=14%  Similarity=0.033  Sum_probs=121.2

Q ss_pred             EEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEe-eCccEEE-eCCcEEEEEcCCCeEEEEE
Q 017642          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~-~d~~i~vwd~~~~~~~~~~  210 (368)
                      ...|.+ ++.++++.-..     +.|..|+..+++.. .+.... ...+++. +++.+++ ..+.+.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTT-----TEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence            345665 55555554444     89999998776543 344333 7777887 7888777 6677888899888665444


Q ss_pred             ec-----cCCCeeEEEEecCCCeEEEEeecCCC------CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEE-EeC
Q 017642          211 ET-----IANPKGLCAVSQGVGSLVLVCPGLQK------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SST  278 (368)
Q Consensus       211 ~~-----~~~~v~~~~~~~~~~~~~l~~~g~~d------g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s-~~~  278 (368)
                      ..     .....+.+++.++|+ +++...+...      |.+..++..+ .+..+...-...+.|+|+|+++.|+. -+.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADGLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC-eEEEEecCcccccceEECCcchheeecccc
Confidence            33     234567799999987 4444322211      4555555553 33444444556789999999997764 455


Q ss_pred             CCcEEEEEECCCCce----eEeeEec-cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          279 KGTLVRIFNTLDGTL----LQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       279 dg~~i~iwd~~~~~~----~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+. |..+++.....    ...+... ...+..-.+++..+|++.++....+.|.+++-+ ++.
T Consensus       155 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~  216 (246)
T PF08450_consen  155 NGR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL  216 (246)
T ss_dssp             TTE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred             cce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence            666 88888863221    1122111 112347889999999988887788899999976 543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.93  E-value=9.1e-07  Score=89.07  Aligned_cols=197  Identities=11%  Similarity=0.053  Sum_probs=124.6

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEE-------cccCC-------ceeEEEEEEeC-CeEEEEecCC
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRD-------FERGG-------GIGVVEMLFRC-NILALVGGGP  149 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~-~~~~~~s~~~  149 (368)
                      ....|++.+++..|.++.  .+.|+++|..+........       +. +.       -..-..+++++ ++.++++...
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~-gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQ-GGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCC-CChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            457789999888776666  3459989876543211100       00 00       01124677777 5666666555


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe---------------cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS---------------FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~  210 (368)
                      +     +.|++||..++.......               .-.....+++++++..+.    .++.|++||+.++......
T Consensus       704 ~-----~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        704 Q-----HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             C-----CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            4     899999987765432110               012356799999986433    4689999999876532111


Q ss_pred             ec-------------c--------CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc------------
Q 017642          211 ET-------------I--------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH------------  257 (368)
Q Consensus       211 ~~-------------~--------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~------------  257 (368)
                      .+             .        ...-..++++++|+ ++++  ...++.|++|+.....+..+.+.            
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~  855 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK  855 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence            00             0        00124678888886 3443  45689999988876655544321            


Q ss_pred             --CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642          258 --DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       258 --~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                        -.....|+++++|+++++-+.++. |++||+.+++.
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~  892 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA  892 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence              124678999999998888888888 99999988764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.9e-07  Score=85.21  Aligned_cols=228  Identities=10%  Similarity=0.075  Sum_probs=144.0

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      -+...+|...|.-+.|+.+.+.|.+.+ ++-|.||-+-.+.-.... +.......|.+++|+.++..++-.-.|     |
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeD-----G  137 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYED-----G  137 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEcc-----C
Confidence            345679999999999999999999888 666999998766543221 222556678899999888777766665     8


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC-------eEEEEE----eccCCCeeEEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-------KLLHQI----ETIANPKGLCA  221 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~-------~~~~~~----~~~~~~v~~~~  221 (368)
                      .|.+=.++..+ +.--. .......+.|++|.+.+.   .+|.+++||.+..       .+....    ......+..+.
T Consensus       138 avIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~  216 (1189)
T KOG2041|consen  138 AVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE  216 (1189)
T ss_pred             CEEEEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence            88776654332 22111 223345788999987666   6899999997431       111111    11122344444


Q ss_pred             Ee--------cCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--------EEE
Q 017642          222 VS--------QGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------LVR  284 (368)
Q Consensus       222 ~~--------~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--------~i~  284 (368)
                      |.        |+-..+.++   ..+|.+.| -..+......+ ...-.|..+.|+++|..||.++.+..        .|.
T Consensus       217 w~~g~~~~v~pdrP~lavc---y~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  217 WNTGPYQPVPPDRPRLAVC---YANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             eccCccccCCCCCCEEEEE---EcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence            43        344443333   46788877 22222221122 22356889999999999999987531        155


Q ss_pred             EEECCCCceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  319 (368)
                      ++. .-|+.+..++.  ....|++++|-..|-.++
T Consensus       293 Fys-p~G~i~gtlkv--pg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  293 FYS-PYGHIVGTLKV--PGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             Eec-cchhheEEEec--CCceeeeeEEcCCceEEE
Confidence            554 45777777776  456788888866554443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=4e-07  Score=83.85  Aligned_cols=233  Identities=13%  Similarity=0.077  Sum_probs=161.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC------------CeEEEEecCCCCCCCC
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------------NILALVGGGPDPQYPL  155 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~s~~~d~~~~~  155 (368)
                      -.++.|+|.| ++|.|+...|.+-|....+.+  ..++ .|...|..+.|.+            ....+++++..     
T Consensus        18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~i--qsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~-----   88 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLI--QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS-----   88 (1062)
T ss_pred             ccccccCccc-eEEEecCceEEEEehhhhhhh--hccc-cCccceeEEEeccCCCchhccCccccceeEEecccc-----
Confidence            5567898866 788888888999997766655  4454 5667777777753            24566777766     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeC---c-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---R-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~---~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                      |.|.+||...+..+..+. +...+..++|-+.   . .+++   ....|.+|+..+|+.............++.+.|-..
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS  168 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence            999999999998888888 7889999998763   3 2333   567999999999999888766666667788877554


Q ss_pred             eEEEEeecCCCCeEEE-EecCc-------ceeeeeeccCc-------------------------ceEEEEECCCCCEEE
Q 017642          228 SLVLVCPGLQKGQVRV-EHYAS-------KRTKFIMAHDS-------------------------RIACFALTQDGQLLA  274 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i-~~~~~-------~~~~~~~~~~~-------------------------~i~~v~~sp~g~~l~  274 (368)
                      ..+.+. | ..|.+.+ .+...       +..+.-..|..                         ....++|+|.-+.++
T Consensus       169 rh~~~l-~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  169 RHFCVL-G-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             ceEEEE-c-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            434443 3 3555555 33221       22222222221                         012356788776444


Q ss_pred             EEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC--EEEEEeCCCeEEEEEccC
Q 017642          275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       275 s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~  334 (368)
                      ....... +.|+|++-..++..+..  ..+.+.-+.+-|+++  .|.+.-.||.+.+|-.+.
T Consensus       247 fi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  247 FITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            4555566 99999998888887776  455566677777764  688888999999998765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.88  E-value=8.1e-07  Score=87.83  Aligned_cols=238  Identities=12%  Similarity=0.083  Sum_probs=145.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEE----EecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ...+.|.++.|-++...++.+. +|.|.+.    +..........    .-..++.+++|+|+...++-...+     ++
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~-----~~  143 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGE-----GN  143 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCC-----CE
Confidence            4457899999999998887777 5557777    43333333332    334678888888877655544444     78


Q ss_pred             EEEEeCCCCcEEEEEe-cC-----CceeEEEEeeCccEEE-eCCcE--E-EEEcCCC-eEEEEEeccCCCeeEEEEecCC
Q 017642          158 VMIWDDHQSRCIGELS-FR-----SEVRSVKLRRDRIIVV-LEQKI--F-VYNFADL-KLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~-----~~v~~~~~~~~~~~l~-~d~~i--~-vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      |.+.+ ++.+.+.+.. +.     ..-..+-|-.....+= ..|+-  + +-|.... .....+. ....-..++|..||
T Consensus       144 l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG  221 (928)
T PF04762_consen  144 LLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG  221 (928)
T ss_pred             EEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC
Confidence            88876 6777776654 21     2233444443322211 11111  0 0010000 0001122 23344568888888


Q ss_pred             CeEEEEeecCC---CCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEec
Q 017642          227 GSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       227 ~~~~l~~~g~~---dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                      .++++.+....   -..++||++++....+-+.-.+--.+++|.|.|++||+.-.   ... |.+|+ ++|-.-.+|...
T Consensus       222 ~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~  299 (928)
T PF04762_consen  222 EYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLR  299 (928)
T ss_pred             cEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecC
Confidence            86555442112   35788899997655555544444567899999999998765   234 88887 566555555442


Q ss_pred             --cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          301 --ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       301 --~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                        .....|..+.|++|+..||..-.|. |.+|-..+
T Consensus       300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence              2456899999999999999987666 99998765

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.87  E-value=7.1e-07  Score=72.21  Aligned_cols=190  Identities=11%  Similarity=0.002  Sum_probs=115.1

Q ss_pred             CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEE---EEeeCccEEE-eCCcEEEEEcCCCeEEEEEecc
Q 017642          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSV---KLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI  213 (368)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~---~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~  213 (368)
                      +...++.++..     |.+.+|...+.+....+-  +...|.-+   +-+.-...++ .|.++++.+++-+.....+...
T Consensus        83 kc~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             cccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence            34455666554     999999988665433322  33333322   2222233334 5888888888644322222111


Q ss_pred             CCCeeEEEEecCCCeEEEEeecCCCCeEEEEec--Ccc-eeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASK-RTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~-~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                      .-.+..+.+++|++.  +++.|. ...|..+..  ++. .+.. .......-.+..|+.....+|++..||+ +.|||++
T Consensus       158 ~~~~ns~~~snd~~~--~~~Vgd-s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR  233 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSW--GSSVGD-SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVR  233 (344)
T ss_pred             ccceeeeEEcCCCce--EEEecC-CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEec
Confidence            123678999999985  444453 444444332  232 2221 2223344567889999899999999999 9999998


Q ss_pred             CCceeEeeE---eccCcccEEEEEEecCCC--EEEEEeCCCeEEEEEccCCCCC
Q 017642          290 DGTLLQEVR---RGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       290 ~~~~~~~~~---~~~~~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .........   ...|.+.+..+.|++.|.  +|...-.-+.+.+-|+++....
T Consensus       234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            755433221   233789999999998664  3444444567889998887643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=3.5e-06  Score=71.11  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=122.3

Q ss_pred             CcEEEEeCCCCcEEEEEec-CCc--eeEEEEeeCccEEE--------eCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEe
Q 017642          156 NKVMIWDDHQSRCIGELSF-RSE--VRSVKLRRDRIIVV--------LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~-~~~--v~~~~~~~~~~~l~--------~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~  223 (368)
                      ....+||..+++....+.. .+.  .-.-.|++||+++.        ..|.|-|||.+ +.+.+.++..+.-.--.+.+.
T Consensus        28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~  107 (305)
T PF07433_consen   28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM  107 (305)
T ss_pred             cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence            4578999999998888762 221  22567999999998        25789999998 667777887655444568899


Q ss_pred             cCCCeEEEEeecCC-----CCeEE------------EEecCcceeee--e--eccCcceEEEEECCCCCEEEEEeCCCc-
Q 017642          224 QGVGSLVLVCPGLQ-----KGQVR------------VEHYASKRTKF--I--MAHDSRIACFALTQDGQLLATSSTKGT-  281 (368)
Q Consensus       224 ~~~~~~~l~~~g~~-----dg~i~------------i~~~~~~~~~~--~--~~~~~~i~~v~~sp~g~~l~s~~~dg~-  281 (368)
                      ||++.++++- |+-     .|..+            ++..+++.+..  +  .-|...|+.+++.++|..++..-..|. 
T Consensus       108 pDG~tLvVAN-GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~  186 (305)
T PF07433_consen  108 PDGETLVVAN-GGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP  186 (305)
T ss_pred             CCCCEEEEEc-CCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC
Confidence            9998877765 431     12222            23444454444  3  337778999999999986665544332 


Q ss_pred             -----EEEEEECCCCceeEeeEec-----cCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCCCCC
Q 017642          282 -----LVRIFNTLDGTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       282 -----~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~  341 (368)
                           .|-+++  .++.+..+...     .-.+.+-+|+++.++.++++.+ ..+.+.+||..+++-....
T Consensus       187 ~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  187 GDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             CccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence                 144443  33333333321     1235799999999999886665 6788999999998766543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=3.7e-08  Score=89.87  Aligned_cols=239  Identities=14%  Similarity=0.145  Sum_probs=155.7

Q ss_pred             CEEEEEEcCCCC---EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEe
Q 017642           87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        87 ~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      .|-.+.|++...   ++++.+...-.+|++.........-+.|+|...++++.|++.. .++++++-|     ..+..||
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-----t~vh~wd  143 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-----TYVHAWD  143 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-----ccceeee
Confidence            566677876532   3444445557789986543332222336999999999998754 455666666     8899999


Q ss_pred             CCCC-cEEEEEe-cCCceeEEEEee-CccEEE--eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          163 DHQS-RCIGELS-FRSEVRSVKLRR-DRIIVV--LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       163 ~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~--~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +++. .++..+. -......++|+. ++..++  ..+.|++||++.| ..+..+++|...++.+.|..--...++  +.+
T Consensus       144 ~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~--s~~  221 (1081)
T KOG0309|consen  144 MRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIM--SSS  221 (1081)
T ss_pred             ccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhc--ccC
Confidence            9875 3455544 556677889987 556666  4668999999875 567778888878888887765444344  356


Q ss_pred             CCCeEEEEecCcce--eeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEE---------EECCC-CceeEeeEeccC
Q 017642          237 QKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRI---------FNTLD-GTLLQEVRRGAD  302 (368)
Q Consensus       237 ~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~i---------wd~~~-~~~~~~~~~~~~  302 (368)
                      .||+|+.|+.....  -........+|..-.+-|-|.  ++.---.+.. +.+         |+..+ .+.++.|.+  |
T Consensus       222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~G--H  298 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVG--H  298 (1081)
T ss_pred             CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecC--c
Confidence            89999998876532  222333445666666666554  2211111112 333         43333 467888988  7


Q ss_pred             cccEEEEEEecCC----------CEEEEEeCCCeEEEEEccCC
Q 017642          303 RAEIYSLAFSSNA----------QWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       303 ~~~v~~l~~sp~~----------~~l~s~s~dg~i~iwd~~~~  335 (368)
                      ...|....|-..+          -.|++-+.|.++++|-+.+.
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            7777777664322          26899999999999998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=3.3e-08  Score=86.00  Aligned_cols=201  Identities=15%  Similarity=0.118  Sum_probs=145.5

Q ss_pred             EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeC--ccEEE---eCCc
Q 017642          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVV---LEQK  195 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~---~d~~  195 (368)
                      .|. .|...+..+.|+..+..++++++|     ..|.+||...++....+.  |...|....|-|.  .+.++   .||.
T Consensus       137 kL~-~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  137 KLN-KHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             ccc-CCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            343 788899999999999999999998     999999999999888887  8888888788773  23333   6899


Q ss_pred             EEEEEcC-CCeE--EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcce---eeeeeccCc---ceEEEE
Q 017642          196 IFVYNFA-DLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKR---TKFIMAHDS---RIACFA  265 (368)
Q Consensus       196 i~vwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~---~~~~~~~~~---~i~~v~  265 (368)
                      +++=.+. ++.+  ...+..|.+++..+++-|+....++.+  +.|+.+.- +......   ...-+.+..   ....++
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9988773 3433  344567899999999999998766654  46887775 4333322   222223333   577889


Q ss_pred             ECCCCC-EEEEEeCCCcEEEEEECCCCce------eEeeEec----cCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          266 LTQDGQ-LLATSSTKGTLVRIFNTLDGTL------LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       266 ~sp~g~-~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      ..|... .+++++.|.. +++||.+.-..      +..+..+    .....|++++|+.++.-|.+.-.|-.|+++.-
T Consensus       289 ~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~  365 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK  365 (559)
T ss_pred             cCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence            998665 8999999999 99999875321      2222211    13457999999988776666667778999943

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.9e-08  Score=58.21  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=35.9

Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ++++..+.+  |.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367788888  889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=3e-06  Score=78.25  Aligned_cols=93  Identities=13%  Similarity=0.178  Sum_probs=69.0

Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE---------eCCCeEEEEEccCCCCCCCCC
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      ++|.|...|+ |.++|+.++..-..+..  |.+.|.++.|-...+++-.+         +.-+.+.|-|+++|....--.
T Consensus       439 LvAvGT~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~  515 (1062)
T KOG1912|consen  439 LVAVGTNSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG  515 (1062)
T ss_pred             eEEeecCCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccccc
Confidence            6788999999 99999999998888887  88899999998665544322         222467899999998776555


Q ss_pred             CCCCCCCCccCCCcccccceeeeee
Q 017642          343 PRSTSDPTLPTSSLSFIKGEESIFI  367 (368)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~  367 (368)
                      -.+.+.++...-..+.++.|+...|
T Consensus       516 l~~~despI~~irvS~~~~yLai~F  540 (1062)
T KOG1912|consen  516 LQKPDESPIRAIRVSSSGRYLAILF  540 (1062)
T ss_pred             CCCCCcCcceeeeecccCceEEEEe
Confidence            5556666666666666666666544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=1e-07  Score=81.13  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=97.3

Q ss_pred             EeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEecCCceeEEEEeeCccEE-E--eCC---cEEEEEcCCCeE
Q 017642          137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELSFRSEVRSVKLRRDRIIV-V--LEQ---KIFVYNFADLKL  206 (368)
Q Consensus       137 ~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~--~d~---~i~vwd~~~~~~  206 (368)
                      .++.+..++.+..+     ....+++....    +....+.....-+++.+..+...+ +  .-|   .+.+|....+.+
T Consensus        70 ~s~~~~llAv~~~~-----K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   70 TSDSGRLVAVATSS-----KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cCCCceEEEEEeCC-----CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            34555555544443     44444444322    233333344444555555443332 2  233   455555554544


Q ss_pred             EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      .. +-+|-..+..+++++|++.  ++ ++..|+.|++ |......+..+ -+|+..|..++.-++ ..|++++.|++ |+
T Consensus       145 ~~-~lGhvSml~dVavS~D~~~--Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr  218 (390)
T KOG3914|consen  145 EP-ILGHVSMLLDVAVSPDDQF--II-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LR  218 (390)
T ss_pred             ch-hhhhhhhhheeeecCCCCE--EE-EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EE
Confidence            43 3478889999999999975  33 3679999999 66555555554 579999999998754 46899999999 99


Q ss_pred             EEECCCCceeEeeE
Q 017642          285 IFNTLDGTLLQEVR  298 (368)
Q Consensus       285 iwd~~~~~~~~~~~  298 (368)
                      +||+.+|+.+.++.
T Consensus       219 ~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  219 LWDITSGKLLDTCD  232 (390)
T ss_pred             EEecccCCcccccc
Confidence            99999998876654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.9e-08  Score=87.78  Aligned_cols=211  Identities=12%  Similarity=0.220  Sum_probs=145.5

Q ss_pred             CCCcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-----ceEEEcccCCceeEEEEEEeCCeEEEEecC
Q 017642           75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVGGG  148 (368)
Q Consensus        75 ~~~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  148 (368)
                      ..+.....+|...|..++--.+.+-+++++ |++|++|.+.....     .+..++. .|...+.++-|-.+...+++++
T Consensus       725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~ScD  803 (1034)
T KOG4190|consen  725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASCD  803 (1034)
T ss_pred             eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeecc
Confidence            344556778999999887655555666666 99999999975322     2334554 7888899999988888888876


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeC--ccEEE----eCCcEEEEEcCCCeEEEEEe-----ccC
Q 017642          149 PDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQIE-----TIA  214 (368)
Q Consensus       149 ~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~----~d~~i~vwd~~~~~~~~~~~-----~~~  214 (368)
                             +.|.+||.--++.+..+.   ..+.+..+..-++  ..+++    ...+|+++|.+.++-...++     +..
T Consensus       804 -------~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  804 -------GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             -------CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence                   889999988877666443   3344444444443  33333    47899999999886555553     234


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEE-EECCCCc
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGT  292 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~i-wd~~~~~  292 (368)
                      .-+.++++.+.|+.+..   |-.+|.|.+ +.++++.+..+...+.....++ .|..+.|+....|.+ +.| |-..++.
T Consensus       877 a~~R~iaVa~~GN~lAa---~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgi  951 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAA---ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGI  951 (1034)
T ss_pred             hheeEEEeccCcchhhH---HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCe
Confidence            55788999999987443   446788887 7777777776666555555554 355667888888888 888 8766665


Q ss_pred             eeEeeE
Q 017642          293 LLQEVR  298 (368)
Q Consensus       293 ~~~~~~  298 (368)
                      .....+
T Consensus       952 mh~q~k  957 (1034)
T KOG4190|consen  952 MHLQDK  957 (1034)
T ss_pred             eeeccC
Confidence            554444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.77  E-value=9.5e-06  Score=73.30  Aligned_cols=220  Identities=16%  Similarity=0.120  Sum_probs=127.8

Q ss_pred             CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (368)
Q Consensus        96 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~  174 (368)
                      ++..+++++ ++.+..+|.++++......+.  ... ........ +.+++... +     +.|..||.++|+.+.++..
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~-~~~p~v~~-~~v~v~~~-~-----g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEV-LSPPLVAN-GLVVVRTN-D-----GRLTALDAATGERLWTYSR  173 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--cee-ecCCEEEC-CEEEEECC-C-----CeEEEEEcCCCceeeEEcc
Confidence            355666666 777999998887777654442  211 11112223 34444433 3     8999999999998887763


Q ss_pred             CCcee------EEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCC----C------e-eEEEEecCCCeEEEEeec
Q 017642          175 RSEVR------SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN----P------K-GLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       175 ~~~v~------~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~~~l~~~g  235 (368)
                      .....      .... .++.+++  .++.+..+|.++|+.+........    .      + ....+  .++.+++   +
T Consensus       174 ~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~---~  247 (377)
T TIGR03300       174 VTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYA---V  247 (377)
T ss_pred             CCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEE---E
Confidence            33221      1122 2344444  578999999999987665432110    0      0 01111  2333333   3


Q ss_pred             CCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      +.+|.++.++. +++.+.... .. .......  ++..++.++.+|. |..+|..+++.+...... ..........  .
T Consensus       248 ~~~g~l~a~d~~tG~~~W~~~-~~-~~~~p~~--~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~  319 (377)
T TIGR03300       248 SYQGRVAALDLRSGRVLWKRD-AS-SYQGPAV--DDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--V  319 (377)
T ss_pred             EcCCEEEEEECCCCcEEEeec-cC-CccCceE--eCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--E
Confidence            35778877555 344333332 11 1122222  4567888889999 999999999887665321 1112222222  3


Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          315 AQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +..|++++.+|.|+++|..+++..-
T Consensus       320 g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEE
Confidence            6688889999999999998887653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.75  E-value=3.2e-08  Score=57.22  Aligned_cols=38  Identities=34%  Similarity=0.614  Sum_probs=35.7

Q ss_pred             ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                      +.+..+.+|...|++|+|+|++.+|++++.|+. |+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            456789999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.75  E-value=1.1e-05  Score=72.93  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=129.1

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  175 (368)
                      +..+.+++ ++.+..+|..+++......+. . .. ....... +..++++.. +     +.|..+|..+|+.+......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-~-~~-~~~p~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLD-E-RL-SGGVGAD-GGLVFVGTE-K-----GEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCC-C-Cc-ccceEEc-CCEEEEEcC-C-----CEEEEEECCCCcEeeeeccC
Confidence            44566666 777999998888877665553 2 11 1122233 333444333 3     89999999999998877654


Q ss_pred             CceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCee-----EEEEecCCCeEEEEeecCCCCeEEEEe-cC
Q 017642          176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKG-----LCAVSQGVGSLVLVCPGLQKGQVRVEH-YA  247 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~  247 (368)
                      +.+.+.....++.+++  .++.|+.||.++|+.+..+........     ...+. + +. +++  +..++.+...+ .+
T Consensus       135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~-v~~--~~~~g~v~ald~~t  209 (377)
T TIGR03300       135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GG-VLV--GFAGGKLVALDLQT  209 (377)
T ss_pred             ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CE-EEE--ECCCCEEEEEEccC
Confidence            4444332233555555  689999999999998877654322111     11111 2 22 222  44567776644 44


Q ss_pred             cceeeeeeccC----cc------e-EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642          248 SKRTKFIMAHD----SR------I-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       248 ~~~~~~~~~~~----~~------i-~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      ++.+.......    ..      + ....+  .+..++.++.+|. ++.||..+|+.+......    ......  .++.
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~  280 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDN  280 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCC
Confidence            54433221100    00      0 11112  3457777888999 999999999887665521    112222  2456


Q ss_pred             EEEEEeCCCeEEEEEccCCCCC
Q 017642          317 WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .++.++.||.|+.+|..+++..
T Consensus       281 ~vyv~~~~G~l~~~d~~tG~~~  302 (377)
T TIGR03300       281 RLYVTDADGVVVALDRRSGSEL  302 (377)
T ss_pred             EEEEECCCCeEEEEECCCCcEE
Confidence            7777888999999999888643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.74  E-value=5.4e-06  Score=75.18  Aligned_cols=217  Identities=14%  Similarity=0.182  Sum_probs=118.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      .-....+.++|+|+++++++++...||.......        ........+.|..++.+.+-...      ++|.++.--
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~--------k~~G~g~~~vw~~~n~yAv~~~~------~~I~I~kn~   97 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN--------KAFGSGLSFVWSSRNRYAVLESS------STIKIYKNF   97 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE--------EEEEE-SEEEE-TSSEEEEE-TT------S-EEEEETT
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc--------cccCceeEEEEecCccEEEEECC------CeEEEEEcC
Confidence            3346789999999999999999988887322211        12234556777775554444332      789996422


Q ss_pred             CCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          165 QSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                      +.+....+.....+..+-.   |.+++  .++.|.+||.++++.++.+...  ++..+.|+++++.+.+++    +..+.
T Consensus        98 ~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~  168 (443)
T PF04053_consen   98 KNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIY  168 (443)
T ss_dssp             EE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEE
T ss_pred             ccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEE
Confidence            3333234443333444433   66666  5667999999999999998643  378899999999766654    45677


Q ss_pred             EEecCcc------------eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          243 VEHYASK------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       243 i~~~~~~------------~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      |...+..            ....+..-...|.+..|..+  .++..+.. . |+.+  ..|+.- .+..  -..++.=+.
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yllg  239 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLLG  239 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEEE
T ss_pred             EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEEE
Confidence            7544444            44444443567888889755  44444444 5 7773  445433 3332  234667777


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcc
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +.+..+.+.....|+.|..+.+.
T Consensus       240 y~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  240 YLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EETTTTEEEEE-TT--EEEEE--
T ss_pred             EEccCCEEEEEECCCCEEEEEEC
Confidence            78877888888888888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.72  E-value=4.4e-07  Score=73.02  Aligned_cols=133  Identities=15%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECC-C
Q 017642          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-D  269 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp-~  269 (368)
                      -+..+.|+++..+.+..-......+.+++-+|..++++ + .|+.||.+.+|+.+.  .+...+..|+.+|..+-|+| +
T Consensus       158 ~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v-~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  158 QDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV-C-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             ccceeeecccccccccccccccccchhhhCCcccccEE-E-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence            34566677654433222222334488888899887733 3 488999999988765  34445789999999999999 5


Q ss_pred             CCEEEEEeCCCcEEEEEECCCCceeE------------------e---eEec--cCcccEEEEEEecCCCEEEEEeCCCe
Q 017642          270 GQLLATSSTKGTLVRIFNTLDGTLLQ------------------E---VRRG--ADRAEIYSLAFSSNAQWLAVSSDKGT  326 (368)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~~~~------------------~---~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg~  326 (368)
                      +..|+++++||. +.-||..+ +.+.                  .   +..-  .....|+++  .--|..|++|++-+.
T Consensus       236 p~~Lft~sedGs-lw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sinsf--DV~g~~lVcgtd~ea  311 (319)
T KOG4714|consen  236 PEHLFTCSEDGS-LWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSF--DVLGPCLVCGTDAEA  311 (319)
T ss_pred             chheeEecCCCc-EEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeee--eccCceEEeccccce
Confidence            569999999999 99999653 2221                  0   0000  001123332  334778999998888


Q ss_pred             EEEEE
Q 017642          327 VHVFN  331 (368)
Q Consensus       327 i~iwd  331 (368)
                      |++++
T Consensus       312 Iyl~~  316 (319)
T KOG4714|consen  312 IYLTR  316 (319)
T ss_pred             EEEec
Confidence            88875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=8e-06  Score=79.17  Aligned_cols=200  Identities=14%  Similarity=0.127  Sum_probs=122.4

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eC-CcEEEEEcCC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LE-QKIFVYNFAD  203 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d-~~i~vwd~~~  203 (368)
                      .+...+.++.|..+...++-+..+     |.|.+-|..+......-.....|.+++|+||+.+++  .. +++.+-+ .+
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~  139 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KD  139 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence            344678888886655444443333     889988887765544444788999999999999888  33 3443322 21


Q ss_pred             C------------------------eEEEEEeccC---------------------CCeeEEEEecCCCeEEEEee--cC
Q 017642          204 L------------------------KLLHQIETIA---------------------NPKGLCAVSQGVGSLVLVCP--GL  236 (368)
Q Consensus       204 ~------------------------~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~--g~  236 (368)
                      .                        +....|.+..                     +.-..+.|..||+.+.+..-  ..
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence            1                        1111222111                     11234788888886544211  22


Q ss_pred             CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe---CCCcEEEEEECCCCceeEeeEe--ccCcccEEEEEE
Q 017642          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAF  311 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~  311 (368)
                      ....|++|+..+..-..-....+-=.+++|-|.|..+++-.   .|+. |.+|. ++|-.-..|..  ......|..++|
T Consensus       220 ~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  220 GTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             CceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchheeee
Confidence            22789999988543333333334456899999999888753   3556 99998 44433322221  113445899999


Q ss_pred             ecCCCEEEE---EeCCCeEEEEEccC
Q 017642          312 SSNAQWLAV---SSDKGTVHVFNLKV  334 (368)
Q Consensus       312 sp~~~~l~s---~s~dg~i~iwd~~~  334 (368)
                      +.++..|++   ......|++|-+.+
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecC
Confidence            999999987   44555599998765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.65  E-value=0.00012  Score=62.84  Aligned_cols=240  Identities=15%  Similarity=0.121  Sum_probs=135.3

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccCCceeE----EEEEEeCCeEEEE--ecCCCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGGGIGV----VEMLFRCNILALV--GGGPDPQ  152 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--s~~~d~~  152 (368)
                      .+..+|||+.+.++.           ...|.+||..+.....+..+...++..+    ..+..+.++.++.  -..--  
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa--  117 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA--  117 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS--
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC--
Confidence            467789999887643           1228999998887776666642212211    1123333333332  22221  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcC-CCeEEEEEe----ccCCCe-eEEEEecC
Q 017642          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFA-DLKLLHQIE----TIANPK-GLCAVSQG  225 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~-~~~~~~~~~----~~~~~v-~~~~~~~~  225 (368)
                         ..|.|.|+..++.+.++.-.+...-.-..+++...+ .||.+.-..+. .|+..+...    ....++ ..-++...
T Consensus       118 ---~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  118 ---TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             ---EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             ---CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence               578888999999888887666443333333443222 79999988886 565543221    111222 22334444


Q ss_pred             CCeEEEEeecCCCCeEEEEecCcceeee---eec----------cCcceEEEEECCCCCEEEEEeC---C------CcEE
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYASKRTKF---IMA----------HDSRIACFALTQDGQLLATSST---K------GTLV  283 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~~~~~~---~~~----------~~~~i~~v~~sp~g~~l~s~~~---d------g~~i  283 (368)
                      +..+++.   +.+|.|+--+..+.....   +..          ..+.-.-+++++..+.|++.-.   +      ++.|
T Consensus       195 ~~~~~F~---Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV  271 (342)
T PF06433_consen  195 GGRLYFV---SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV  271 (342)
T ss_dssp             TTEEEEE---BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred             CCeEEEE---ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence            4444433   257887774444322211   110          0122345777776554444322   1      1248


Q ss_pred             EEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCC
Q 017642          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~  340 (368)
                      -++|+.+++.+.++..   ...+.+|..+.|.+ +|++.+ .++.|.+||..+++....
T Consensus       272 Wv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  272 WVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             EEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             EEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            8889999999999985   34688999999877 555544 578999999999976543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=6.8e-06  Score=79.66  Aligned_cols=242  Identities=12%  Similarity=0.107  Sum_probs=131.9

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....-.+.|.+++||||++.++..+....-++..........+.+.  .........+-|......+-+..       |
T Consensus       103 eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-------g  175 (1265)
T KOG1920|consen  103 EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-------G  175 (1265)
T ss_pred             eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecch-------h
Confidence            34455677999999999999998888434333333333333333331  01222333344433332222211       2


Q ss_pred             cEEEEeCCCCcE-EEEEecCCceeEEEEeeCccEEE-------eC-CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          157 KVMIWDDHQSRC-IGELSFRSEVRSVKLRRDRIIVV-------LE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       157 ~i~vwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~-------~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                      .....+....+. .........=..|.|.-||.+++       .+ ..|++||-+ |.+-..-....+.-.+++|-|.|.
T Consensus       176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs  254 (1265)
T KOG1920|consen  176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS  254 (1265)
T ss_pred             hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC
Confidence            222222111111 11111223345689999998887       25 799999976 544333333344456789999887


Q ss_pred             eEEEEeecCCCCeEEEEecCcceeee----eeccCcceEEEEECCCCCEEEE---EeCCCcEEEEEECCCCcee--EeeE
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRTKF----IMAHDSRIACFALTQDGQLLAT---SSTKGTLVRIFNTLDGTLL--QEVR  298 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~~~----~~~~~~~i~~v~~sp~g~~l~s---~~~dg~~i~iwd~~~~~~~--~~~~  298 (368)
                      .+..+-.-..|+.|.++..++-....    +.....+|..++|+.++.+||+   ...... |++|-+.+..-.  +.+.
T Consensus       255 ~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~  333 (1265)
T KOG1920|consen  255 LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQ  333 (1265)
T ss_pred             eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccce-EEEEEecCeEEEEEEEEe
Confidence            54333333456678887777643332    2334445999999999999887   555556 999987764422  2222


Q ss_pred             eccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEcc
Q 017642          299 RGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       299 ~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~  333 (368)
                      -  .....  +.|+|-. ..|..-..+|...++|+.
T Consensus       334 ~--~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  334 F--SQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             c--ccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence            1  11111  6777743 233333356665555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.59  E-value=3.5e-05  Score=63.42  Aligned_cols=199  Identities=11%  Similarity=0.042  Sum_probs=104.1

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceE---EEcccCCceeEEEEEEeCCe-------EEEEecCCCCCCC
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRCNI-------LALVGGGPDPQYP  154 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~d~~~~  154 (368)
                      ..=..++||||+.+||.+. .+.|++||+.....-..   ..+...-...+..+.|-...       .+++-.-.     
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-----  118 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-----  118 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-----
Confidence            3456789999999999999 66699999864322111   00111112334445443211       22222221     


Q ss_pred             CCcEEEEeCC-----CCcEEEEEe----cCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642          155 LNKVMIWDDH-----QSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       155 ~~~i~vwd~~-----~~~~~~~~~----~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  225 (368)
                       |.++-|-+.     ..+....+.    +...|.++.++|..++++..|.-.-   +++.    -......+.+..+-.+
T Consensus       119 -G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~a~~~GLtaWRiL~~  190 (282)
T PF15492_consen  119 -GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SKASSCGLTAWRILSD  190 (282)
T ss_pred             -ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----ccccccCceEEEEcCC
Confidence             666666542     223444444    4678999999999877762111000   0000    0011112222222222


Q ss_pred             CCeEEEEeecCCCCeE------EEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          226 VGSLVLVCPGLQKGQV------RVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i------~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      ..+...+. ...|+..      .++....... .........|..|..||||+.||+...+|. |.+|++.+-+......
T Consensus       191 ~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  191 SPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhcccc
Confidence            22211211 1112111      1111111111 111224567999999999999999999999 9999999877776665


Q ss_pred             e
Q 017642          299 R  299 (368)
Q Consensus       299 ~  299 (368)
                      .
T Consensus       269 ~  269 (282)
T PF15492_consen  269 Q  269 (282)
T ss_pred             h
Confidence            4

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2.7e-07  Score=77.13  Aligned_cols=150  Identities=15%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             EEEEcC--CCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC-
Q 017642           90 HISFNQ--DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-  166 (368)
Q Consensus        90 ~~~~s~--~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~-  166 (368)
                      .++|+-  .|-.+++|.+.+|-+-|++++...   .|  .....|.++.|......+..|.+.     |.|..+|++.+ 
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~q---sf--~sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rn  285 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ---SF--QSKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRN  285 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeeccccc---cc--ccchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecc
Confidence            346653  344566777888999998876543   33  456677888887755555666665     99999999754 


Q ss_pred             ----cEEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeE---EEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          167 ----RCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       167 ----~~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                          .+...+-|...|+++..-. ++.++.   .+|+|++||++--++   +..+++|.+....+-++-+.+.-++++ +
T Consensus       286 qG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~  364 (425)
T KOG2695|consen  286 QGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-V  364 (425)
T ss_pred             cCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-c
Confidence                5777788999999998776 565555   689999999987766   888888877665555555544444554 6


Q ss_pred             CCCCeEEEEecCcce
Q 017642          236 LQKGQVRVEHYASKR  250 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~  250 (368)
                      ++|...+||......
T Consensus       365 GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGH  379 (425)
T ss_pred             cCeeEEEEEecccCc
Confidence            689999999887543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=7.2e-06  Score=73.91  Aligned_cols=135  Identities=15%  Similarity=0.241  Sum_probs=89.0

Q ss_pred             cEEEEEcCCC--eEEEEEeccCCCeeEEEEecCCCeEEEEe--ecCCCCeEEE----EecCcceeeee----eccCcceE
Q 017642          195 KIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVC--PGLQKGQVRV----EHYASKRTKFI----MAHDSRIA  262 (368)
Q Consensus       195 ~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~g~~dg~i~i----~~~~~~~~~~~----~~~~~~i~  262 (368)
                      .+.++.+..+  +.+..+....++ .++.|+....+.+...  +-+.+|.+.+    +......++..    -.....+.
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~  263 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI  263 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence            4666665443  233333433334 4566776544433332  1234555554    23333222222    24667899


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +++++|+...|+.|+.||. |.+||...+..... +   ..-..+.++|+|+|.++++|+..|.|.+||+.-.
T Consensus       264 ~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  264 CCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999999 99999876643322 2   3456789999999999999999999999998654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.48  E-value=6.7e-07  Score=74.86  Aligned_cols=140  Identities=11%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-----eeeeeeccCcceEEEEE
Q 017642          192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFAL  266 (368)
Q Consensus       192 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~v~~  266 (368)
                      .+..|-+-|+++|-. +.|. ....|.+..|...++  ++. .|..+|.|...|...+     -....--|...|+++..
T Consensus       232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n--Lv~-~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN--LVF-NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ccceeEEEEeecccc-cccc-cchhHHHHHhcccCC--eeE-ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            567888888887732 3443 455677777776665  333 4889999988554432     12233458888999887


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEECCCCce---eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          267 TQ-DGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       267 sp-~g~~l~s~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      -. ++++|.+.+.+|. |++||++--++   +..+.+|.....-.-+-..+....++++++|-..|||.++.+.-
T Consensus       307 Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            66 7789999999999 99999987666   88888743322333344456677888899999999999997754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.46  E-value=2.3e-06  Score=70.79  Aligned_cols=199  Identities=14%  Similarity=0.208  Sum_probs=126.4

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc-E----EEEEe-------------cCCceeEEEEeeCc--
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-C----IGELS-------------FRSEVRSVKLRRDR--  187 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~-~----~~~~~-------------~~~~v~~~~~~~~~--  187 (368)
                      ....+.++.|...+.++++|...     |.|.+|.-+... |    ..+++             -...|..+.|..++  
T Consensus        25 ead~ItaVefd~tg~YlatGDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEeccccceEeecCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence            44567888999999999999987     899999744321 1    11122             23568888887653  


Q ss_pred             -cEEE--eCCcEEEEEcCCCeE------------------------------------------EEEE-eccCCCeeEEE
Q 017642          188 -IIVV--LEQKIFVYNFADLKL------------------------------------------LHQI-ETIANPKGLCA  221 (368)
Q Consensus       188 -~~l~--~d~~i~vwd~~~~~~------------------------------------------~~~~-~~~~~~v~~~~  221 (368)
                       .+++  .|.+|++|.+.....                                          .+.. ..|...+.++.
T Consensus       100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS  179 (460)
T ss_pred             ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence             2344  689999999854310                                          0001 23444566777


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecCc----ceeeeeeccC-----cceEEEEECCCCC-EEEEEeCCCcEEEEEECCCC
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHD-----SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~-----~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~  291 (368)
                      +..|.+.+ + +  ..|-.|.+|....    -.+..++.|.     .-|++..|+|... .+...+..|. |++-|++..
T Consensus       180 ~NsD~et~-l-S--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~  254 (460)
T COG5170         180 FNSDKETL-L-S--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQS  254 (460)
T ss_pred             ecCchhee-e-e--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhh
Confidence            77777642 2 2  2466666687653    1222334443     3588999999654 6667777888 999999843


Q ss_pred             c------eeEeeE--ecc------CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          292 T------LLQEVR--RGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       292 ~------~~~~~~--~~~------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .      .+.+..  +..      -...|..+.|+++|+++++-+. -+|+|||++..+.
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence            2      111111  100      1236888999999999987654 5799999987543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.46  E-value=0.00027  Score=64.20  Aligned_cols=209  Identities=15%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             EEEcCCCCEEEEEeCC------------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           91 ISFNQDHGCFAAGTDH------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        91 ~~~s~~g~~l~~~~d~------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ++.+|.|..+|...|.            .|+||+... +......+  .. ..++.+.|..+...++-..+      |.+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w--~~-~~iv~~~wt~~e~LvvV~~d------G~v  103 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPW--DS-GRIVGMGWTDDEELVVVQSD------GTV  103 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEE--CC-CCEEEEEECCCCeEEEEEcC------CEE
Confidence            4555666666666544            488887543 33333344  23 68889999776555444332      999


Q ss_pred             EEEeCCCCcEEEEE-------e-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCe-EEEEEeccCCCee----------
Q 017642          159 MIWDDHQSRCIGEL-------S-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK-LLHQIETIANPKG----------  218 (368)
Q Consensus       159 ~vwd~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~----------  218 (368)
                      +++|+. |+....+       . ....+....+..+|..+. .++.+++.+--... ..+.+........          
T Consensus       104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence            999976 3331111       1 112223334444665555 45555554322211 1111111000000          


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ...+..+....+++.   .++.+.+ +......   +. ..+++..|++||+|++||.-..+|. +.|.+..-.+.+.++
T Consensus       183 i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  183 IPLLSSDRVVEILLA---NGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEF  254 (410)
T ss_pred             ceEeecCcceEEEEe---cCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEe
Confidence            011222322222222   2334442 2222111   11 2357999999999999999999999 999886656666666


Q ss_pred             EeccCcccEEEEEEecCCCEEE
Q 017642          298 RRGADRAEIYSLAFSSNAQWLA  319 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~~~~l~  319 (368)
                      ... .......|.|+-+...++
T Consensus       255 ~~~-~~~~p~~~~WCG~dav~l  275 (410)
T PF04841_consen  255 DTD-SKSPPKQMAWCGNDAVVL  275 (410)
T ss_pred             ecC-cCCCCcEEEEECCCcEEE
Confidence            653 234667888876654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.44  E-value=2.4e-06  Score=78.52  Aligned_cols=220  Identities=12%  Similarity=0.112  Sum_probs=146.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC---CeEEEEecCCCCCCCCCcEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .-.+.+.++..+|.|+-+|.++..++.+.|++..-.... -+.|...-.+....|++   .-..+++.+.      ..-.
T Consensus        22 ~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkai   94 (1081)
T KOG0309|consen   22 KVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAI   94 (1081)
T ss_pred             EecCcccceeeccccchhhhhhhcCeEEEeccCCCCCce-eeeccCcchhcceecccCCCCceeEEecCc------chhh
Confidence            445678889999999999999988888888875333221 12123344445555554   2345555554      5677


Q ss_pred             EEeCCCC--cEEEEE--ecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-EEEEEeccCCCeeEEEEecCCCeEE
Q 017642          160 IWDDHQS--RCIGEL--SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       160 vwd~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      +|++...  +.+.-+  .|...|+.+.|+++..-+.    .|-.++.||+++.. .+.....-......+.|+.-... +
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-v  173 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-V  173 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-h
Confidence            8887532  223222  2889999999999876555    58899999998753 44444444445566888765554 3


Q ss_pred             EEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCC-CCEEEEEeCCCcEEEEEECCCCce--eEeeEeccCccc
Q 017642          231 LVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAE  305 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~  305 (368)
                      +|  .+....|.+|+...  ..+..+++|...|+.++|..- ...+.+++.||+ |++||..+...  -+.+.   ...+
T Consensus       174 la--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~p  247 (1081)
T KOG0309|consen  174 LA--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFP  247 (1081)
T ss_pred             hh--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCc
Confidence            33  34567788877553  667788889999999988653 236889999999 99999875432  22222   3457


Q ss_pred             EEEEEEecCCC
Q 017642          306 IYSLAFSSNAQ  316 (368)
Q Consensus       306 v~~l~~sp~~~  316 (368)
                      |+.-.+-|-|.
T Consensus       248 iw~~r~~Pfg~  258 (1081)
T KOG0309|consen  248 IWRGRYLPFGE  258 (1081)
T ss_pred             ceeccccccCc
Confidence            77777777554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.44  E-value=1.4e-05  Score=72.26  Aligned_cols=160  Identities=11%  Similarity=0.097  Sum_probs=109.1

Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      .+.++|+++++....+...+.-..-+|+|||+.++    .||  .|+++|+..++.. .+....+.-..-.|+|||+.++
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~iv  297 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIV  297 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEE
Confidence            59999999998877777777778889999999888    244  6888898777643 3544444445678999999877


Q ss_pred             EEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeEeccCcccE
Q 017642          231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       231 l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      +++  +..|.-.|  .+.++.....+......-..-.|+|||++|+..+..+.  .|.+.|+.++..++.+..   ....
T Consensus       298 f~S--dr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~  372 (425)
T COG0823         298 FTS--DRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLN  372 (425)
T ss_pred             EEe--CCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc---cccC
Confidence            664  45565555  55556555555544444347789999998887774321  167777776665444442   3344


Q ss_pred             EEEEEecCCCEEEEEe
Q 017642          307 YSLAFSSNAQWLAVSS  322 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s  322 (368)
                      ..-.|.++|+.++..+
T Consensus       373 e~ps~~~ng~~i~~~s  388 (425)
T COG0823         373 ESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCCCcCCCCceEEEec
Confidence            5667788887766543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.42  E-value=6.7e-05  Score=67.92  Aligned_cols=174  Identities=12%  Similarity=0.116  Sum_probs=111.8

Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-----eC--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-----~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                      ..+.+-|-. +.....+. ....+..-+|++++..++     ..  ..++++|+.+++....+. ..+......|+|||+
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            566666644 66666665 566777889999998876     22  359999999887665554 344445678999999


Q ss_pred             eEEEEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-c-EEEEEECCCCceeEeeEeccCc
Q 017642          228 SLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQEVRRGADR  303 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~  303 (368)
                      .+++..  ..||...|  .+..++....+....+.-..-.|+|||++|+..+..+ . .|.+.|+..+.. ..+..  ..
T Consensus       251 ~l~f~~--~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~  325 (425)
T COG0823         251 KLAFSS--SRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SG  325 (425)
T ss_pred             EEEEEE--CCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cC
Confidence            866654  45676666  4555555555554444444678999999877665543 3 156666655554 33332  11


Q ss_pred             ccEEEEEEecCCCEEEEEeC-CCe--EEEEEccCCC
Q 017642          304 AEIYSLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS  336 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~-dg~--i~iwd~~~~~  336 (368)
                      +.-..-.|+|||++|+..+. +|.  |.+.|+.++.
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            22227789999999887764 344  6666665554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.39  E-value=0.0001  Score=68.37  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=106.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-e------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      +.+.+.|..+.+....+...+....+.++++|++++ .      ..++...+..+...+..+....    ...+.++|+.
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkdGK~  290 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKAGKF  290 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhCCCE
Confidence            667788888888888887777778889999998887 2      2234444333222222221110    1134457775


Q ss_pred             EEEEeecCCCCeEEEEecCc-----ceeeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCce---------
Q 017642          229 LVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL---------  293 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~---------  293 (368)
                      .++   +  ++.|.+.+...     ..+...-.-......|.++|||+++++++. +.. |.|.|+.+.+.         
T Consensus       291 ~~V---~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        291 KTI---G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             EEE---C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence            443   1  45677744333     223332233445688999999998776665 667 99999987553         


Q ss_pred             ---eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          294 ---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       294 ---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                         +.+...+   ..-...+|.++|....+--.|..|..|++.+
T Consensus       365 ~~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               3333331   2345778999998888888899999999987

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.39  E-value=0.00013  Score=66.38  Aligned_cols=220  Identities=12%  Similarity=0.105  Sum_probs=121.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcceEEEcccCCce--------e-EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      ..+.+++ ++.+.-+|.++++......+. ....        . ........+.+ +++. .+     +.+.-+|.++|+
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~v-~v~~-~~-----g~l~ald~~tG~  141 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLS-EKDGWFSKNKSALLSGGVTVAGGKV-YIGS-EK-----GQVYALNAEDGE  141 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCC-CcccccccccccccccccEEECCEE-EEEc-CC-----CEEEEEECCCCC
Confidence            3444444 566777777777766655543 1000        0 01122233333 3333 33     899999999999


Q ss_pred             EEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCe-----eEEEEecCCCeEEEEeecCCCCe
Q 017642          168 CIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       168 ~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                      .+.+....+.+.+--.-.++.+++  .++.++.+|.++|+.+..+.......     ....+.  +..+++   +..+|.
T Consensus       142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~---~~~~g~  216 (394)
T PRK11138        142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIV---GGDNGR  216 (394)
T ss_pred             CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEE---EcCCCE
Confidence            988877444443322223555555  57899999999999988775321110     111111  222222   335666


Q ss_pred             EEE-EecCcceeeeeeccC----c---ceEEEEECC--CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          241 VRV-EHYASKRTKFIMAHD----S---RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       241 i~i-~~~~~~~~~~~~~~~----~---~i~~v~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      +.. +..+++.+.......    .   ....+.-+|  .+..++.++.+|. +..+|..+|+.+......    ....+.
T Consensus       217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~  291 (394)
T PRK11138        217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA  291 (394)
T ss_pred             EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE
Confidence            665 444444333221100    0   001111122  2446667778898 999999999877654421    112222


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                        .++..|+.++.+|.|..+|.++++.
T Consensus       292 --~~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        292 --VDGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             --EECCEEEEEcCCCeEEEEECCCCcE
Confidence              2456677778899999999988764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.36  E-value=3.4e-06  Score=68.04  Aligned_cols=72  Identities=17%  Similarity=0.375  Sum_probs=59.5

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEEEccC
Q 017642          260 RIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       260 ~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      .|.+++-+|..+ ++++|+.||. +-+||.++...... +..  |+..|+.+-|+| ++..|.++++||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            488999998655 7778888998 99999998754433 333  889999999998 567899999999999999875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.35  E-value=0.0002  Score=60.14  Aligned_cols=174  Identities=16%  Similarity=0.166  Sum_probs=106.7

Q ss_pred             CCcEEEEeCCCCcEEEEEecCC---ceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          155 LNKVMIWDDHQSRCIGELSFRS---EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      +|.|..||..+|+.+.......   ...+..+..++.+++  .++.|+.||..+|+.+..+.. ...+.... ..+++.+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            3899999999999999887422   222223435565555  689999999999999888865 33322222 2344444


Q ss_pred             EEEeecCCCCeEEEEe-cCcceeeee-eccC---cceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642          230 VLVCPGLQKGQVRVEH-YASKRTKFI-MAHD---SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~-~~~~~~~~~-~~~~---~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      +++.   .++.++.++ .+++.+... ....   ..........++..++.+..++. |..+|+++|+.+..+.......
T Consensus        80 ~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   80 YVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred             cccc---ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence            4433   466777755 666666553 2221   11122222224778888888898 9999999999988877632111


Q ss_pred             --c------EEEEEEecCCCEEEEEeCCCe-EEEEEccCCC
Q 017642          305 --E------IYSLAFSSNAQWLAVSSDKGT-VHVFNLKVNS  336 (368)
Q Consensus       305 --~------v~~l~~sp~~~~l~s~s~dg~-i~iwd~~~~~  336 (368)
                        .      +..-....++ .++.++.++. +.+ |+.+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~  194 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE  194 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC
Confidence              1      1222222344 6666666775 555 888887

...

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.34  E-value=0.00073  Score=59.57  Aligned_cols=216  Identities=13%  Similarity=0.215  Sum_probs=117.1

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEE---EEEeC-----CeEEEEecCCC----CCCCCCcEEEEeCCCC-----c--
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVE---MLFRC-----NILALVGGGPD----PQYPLNKVMIWDDHQS-----R--  167 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~s~~~d----~~~~~~~i~vwd~~~~-----~--  167 (368)
                      .|++.|-.+.+......+.  ....+.+   +.+..     ...++++.+..    ..-..|.|.++++...     +  
T Consensus         3 ~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             EEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            4777777666655555553  2333333   33332     23333332211    1011288999998884     2  


Q ss_pred             EEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCe-EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--
Q 017642          168 CIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--  243 (368)
Q Consensus       168 ~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--  243 (368)
                      .+......+.|++++-- ++.+++ .++.|++|++...+ ....- ........+++...++.++  + |.....+.+  
T Consensus        81 ~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~-~~~~~~~i~sl~~~~~~I~--v-gD~~~sv~~~~  155 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKA-FYDSPFYITSLSVFKNYIL--V-GDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEE-EE-BSSSEEEEEEETTEEE--E-EESSSSEEEEE
T ss_pred             EEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhh-eecceEEEEEEeccccEEE--E-EEcccCEEEEE
Confidence            22333478999999877 445555 79999999997776 33322 2333334455555566433  3 334444544  


Q ss_pred             EecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-------Cc-eeEeeEeccCcccEEEE---E
Q 017642          244 EHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT-LLQEVRRGADRAEIYSL---A  310 (368)
Q Consensus       244 ~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-------~~-~~~~~~~~~~~~~v~~l---~  310 (368)
                      |+.....+..+..  ....++++.|-.+++.++.+..+|. |.++....       +. .+...........|+++   .
T Consensus       156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~  234 (321)
T PF03178_consen  156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS  234 (321)
T ss_dssp             EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred             EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence            6665554444432  3445888888866679999999999 99998752       22 22222111123467777   5


Q ss_pred             Eec--CCC------EEEEEeCCCeEEEE
Q 017642          311 FSS--NAQ------WLAVSSDKGTVHVF  330 (368)
Q Consensus       311 ~sp--~~~------~l~s~s~dg~i~iw  330 (368)
                      +.|  .+.      .++.++.+|.|.+.
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eeecCCCCcccccceEEEEecCCEEEEE
Confidence            445  222      47778889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00038  Score=65.63  Aligned_cols=201  Identities=15%  Similarity=0.165  Sum_probs=126.4

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      .|.|  |++.+..++.|+ ++.|.+++-.   ......+. .....+....+.- +..++++.+.|..-....|+||+++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNSS---FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEeccc---ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4544  568888999999 8888777632   22213333 3333334444443 4356666555522111269999986


Q ss_pred             CC------cEE---EEEe-----cCCceeEEEEeeCccEEE---eCCcEEEEEc---C-CCeEEEEEeccCCCeeEEEEe
Q 017642          165 QS------RCI---GELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNF---A-DLKLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       165 ~~------~~~---~~~~-----~~~~v~~~~~~~~~~~l~---~d~~i~vwd~---~-~~~~~~~~~~~~~~v~~~~~~  223 (368)
                      .-      .++   +.+.     ...++.+++++.+-+.++   .||.|..+.=   + .|...........+|+.+++.
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~  180 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR  180 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence            32      233   2222     245788899999877776   6899888842   1 122223333456789999999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      .++...+++++   -..|.++...++.  ...+..|...+.|..+++....+++++..+  |.+||....++...|.
T Consensus       181 ~d~~s~lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  181 SDGKSVLFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cCCceeEEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence            99988544442   4567777766655  455778888999999987555466666554  8999987666555666

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=1.7e-05  Score=74.75  Aligned_cols=177  Identities=17%  Similarity=0.281  Sum_probs=119.4

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-c
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~  174 (368)
                      +..++.|+ ...+..+|+.+.+......+.   ...+.-|..  ++..+.+|...     |+|.+-|.++.+.++++. |
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR~--Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMRY--NNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeecc---CCceEEEEe--cCcEEEeeccc-----ceEEeecCCcCceeeeeecc
Confidence            34455555 666777888776665444442   222444444  44555555555     999999999999999999 9


Q ss_pred             CCceeEEEEeeCccEEE----------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          175 RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      .+.|.++....+-.+-+          .|.-|+|||++..+.+.-+.-+.++ .-+.|.|.-...++++  +..|...+-
T Consensus       217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~v  293 (1118)
T KOG1275|consen  217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFV  293 (1118)
T ss_pred             ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeec
Confidence            99998877654322221          4888999999988877666554444 3467777765544443  356777773


Q ss_pred             e-c--Cc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          245 H-Y--AS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       245 ~-~--~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                      + .  ..  ..+..+......+..+.++++|..|+.|..+|. |.+|-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence            3 2  11  222333344556999999999999999999999 99996

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.2e-05  Score=64.27  Aligned_cols=243  Identities=10%  Similarity=0.073  Sum_probs=131.8

Q ss_pred             cccccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYP  154 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~  154 (368)
                      ......|...|..++|+|..+ ++..++ ++.|+|.|+++......  +.  ....+++++|+-+. .++.+|...    
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss--y~--a~~~~wSC~wDlde~h~IYaGl~n----  257 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS--YI--AYNQIWSCCWDLDERHVIYAGLQN----  257 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh--ee--ccCCceeeeeccCCcceeEEeccC----
Confidence            346677888999999999877 667777 88899999987665533  32  22667777776543 455555555    


Q ss_pred             CCcEEEEeCCCCc-EEEEEe---cCCceeEEEEe------eCccEEE-eCCcEEEEEcCC--CeEEEEEec-cCCCeeEE
Q 017642          155 LNKVMIWDDHQSR-CIGELS---FRSEVRSVKLR------RDRIIVV-LEQKIFVYNFAD--LKLLHQIET-IANPKGLC  220 (368)
Q Consensus       155 ~~~i~vwd~~~~~-~~~~~~---~~~~v~~~~~~------~~~~~l~-~d~~i~vwd~~~--~~~~~~~~~-~~~~v~~~  220 (368)
                       |.|.|||++..+ .+.++.   ...+|..++.-      +.|-+++ .--.+..|++.-  +....+++. ..+....+
T Consensus       258 -G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism  336 (463)
T KOG1645|consen  258 -GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM  336 (463)
T ss_pred             -ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee
Confidence             999999988653 222222   22334443322      2233333 333444555421  111111211 12333334


Q ss_pred             EEecCCCeEEEEeecCCC-----CeE--EEEecCcceeeeee-cc-Ccc------eEEEEECCCCCEEEEEeCCCcEEEE
Q 017642          221 AVSQGVGSLVLVCPGLQK-----GQV--RVEHYASKRTKFIM-AH-DSR------IACFALTQDGQLLATSSTKGTLVRI  285 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~d-----g~i--~i~~~~~~~~~~~~-~~-~~~------i~~v~~sp~g~~l~s~~~dg~~i~i  285 (368)
                      .+.+..+++++.+ -+.-     ..+  +++..++..+...+ .+ ...      -..+.-.++.++|+.-+.+...+.+
T Consensus       337 qy~~~snh~l~ty-Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil  415 (463)
T KOG1645|consen  337 QYHGVSNHLLLTY-RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL  415 (463)
T ss_pred             eecCccceEEEEe-cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence            4444445544433 1110     011  22333333322211 11 110      0112223455665554444333999


Q ss_pred             EECCCCceeEeeEeccCcccEEEEEEec-C-CCEEEEEeCCCeEEEEEccC
Q 017642          286 FNTLDGTLLQEVRRGADRAEIYSLAFSS-N-AQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       286 wd~~~~~~~~~~~~~~~~~~v~~l~~sp-~-~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ||..+++.++++..   ..+|.+++... + +.+|+.-. |..++||..+.
T Consensus       416 ~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  416 QDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             eccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            99999999999985   46888887654 3 34666554 55699987654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=0.00068  Score=58.61  Aligned_cols=211  Identities=15%  Similarity=0.083  Sum_probs=126.4

Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEE-EEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642           92 SFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        92 ~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      .|.++...|.-..  .+.|.-|+..+++..   .+  .....+.+. ..+..+.++++ .       ..+.+++.+++..
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~--~~p~~~~~~~~~d~~g~Lv~~-~-------~g~~~~~~~~~~~   97 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---VF--PSPGGFSSGALIDAGGRLIAC-E-------HGVRLLDPDTGGK   97 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE---EE--ECCCCcccceeecCCCeEEEE-c-------cccEEEeccCCce
Confidence            5778888776666  555888886644332   22  122223333 33444444444 3       4577888766655


Q ss_pred             EEEEe------cCCceeEEEEeeCccEEEeC--------------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          169 IGELS------FRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       169 ~~~~~------~~~~v~~~~~~~~~~~l~~d--------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      +..+.      .....+.+...|+|.+.+.+              |.|+.+|. .+..++.+..+-..-+.++|+||++.
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            33332      12456688889999888822              22444443 45555555544444567999999998


Q ss_pred             EEEEeecCCCCeEEEEecC---c----ce-eeeeeccCcceEEEEECCCCCEEEEEeCCC-cEEEEEECCCCceeEeeEe
Q 017642          229 LVLVCPGLQKGQVRVEHYA---S----KR-TKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~---~----~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~  299 (368)
                      ++++=  +..+.|.-+...   +    +. ...+....+..-.++...+|.+.+++..+| . |.+|+.. |+++..+..
T Consensus       177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence            77653  344556553332   1    11 112223445566788888998776555555 6 9999976 999988886


Q ss_pred             ccCcccEEEEEEe-cCCCEEEEEe
Q 017642          300 GADRAEIYSLAFS-SNAQWLAVSS  322 (368)
Q Consensus       300 ~~~~~~v~~l~~s-p~~~~l~s~s  322 (368)
                      .  ...+.+++|- ++.+.|...+
T Consensus       253 P--~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         253 P--VKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             C--CCCCccceEeCCCcCEEEEEe
Confidence            3  3678888886 4555554443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.29  E-value=0.0014  Score=60.09  Aligned_cols=243  Identities=12%  Similarity=0.088  Sum_probs=126.5

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCe----EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC------
Q 017642           87 TLLHISFNQDHGCFAAGT--DHG----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP------  154 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~------  154 (368)
                      .+....++|||++||.+-  .|.    ++++|+++++... ..+.   ......+.|.+++..++....+....      
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            344678999999998775  222    8999998874432 2221   11112277777744333322221111      


Q ss_pred             CCcEEEEeCCCCcE--EEEEe--cCCc-eeEEEEeeCccEEE------eC-CcEEEEEcCCC----eEEEEEeccCCCee
Q 017642          155 LNKVMIWDDHQSRC--IGELS--FRSE-VRSVKLRRDRIIVV------LE-QKIFVYNFADL----KLLHQIETIANPKG  218 (368)
Q Consensus       155 ~~~i~vwd~~~~~~--~~~~~--~~~~-v~~~~~~~~~~~l~------~d-~~i~vwd~~~~----~~~~~~~~~~~~v~  218 (368)
                      ...|+.|.+.+...  ...+.  .... ...+..++|+++++      .+ ..+++.|+..+    .....+......+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            35689999887643  24444  2233 66888999999887      24 57899998764    23333333333333


Q ss_pred             EEEEecCCCeEEEEeec-CCCCeEEEEecCc-c---eeeeeeccCc--ceEEEEECCCCCEEE-EEeCCCc-EEEEEECC
Q 017642          219 LCAVSQGVGSLVLVCPG-LQKGQVRVEHYAS-K---RTKFIMAHDS--RIACFALTQDGQLLA-TSSTKGT-LVRIFNTL  289 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~-~---~~~~~~~~~~--~i~~v~~sp~g~~l~-s~~~dg~-~i~iwd~~  289 (368)
                      ...-+. ++.+++.+.. ..++.|..-+... .   ....+..+..  .+..+..  .+.+|+ ....++. .|+++++.
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            222222 5555555421 2234443322222 2   1224455555  3555554  444444 4444442 28999988


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEE-E-Ee--CCCeEEEEEccCCCC
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLA-V-SS--DKGTVHVFNLKVNSG  337 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s-~s--~dg~i~iwd~~~~~~  337 (368)
                      .+.....+... ..+.|..+...+++..+. . .+  .-++++.||+.+++.
T Consensus       358 ~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  358 DGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             -TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            45555555543 234566666666665433 2 22  346788899888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.00036  Score=62.36  Aligned_cols=231  Identities=12%  Similarity=0.095  Sum_probs=128.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCC----------------ceeEEEEEEeCCeEEEEecC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGG----------------GIGVVEMLFRCNILALVGGG  148 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~s~~  148 (368)
                      ...+....|||+|+.++...++.|.+++...+... ..+.. +.                -..-..+.|+|++..++...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~-~lT~d-g~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQET-QLTTD-GEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEE-ESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeE-Eeccc-cceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            45788899999999999999999999987654221 11111 10                01113455666655444332


Q ss_pred             CCCC------------------------C-------CCCcEEEEeCCCCcEEE-EEe-----cCCceeEEEEeeCcc-EE
Q 017642          149 PDPQ------------------------Y-------PLNKVMIWDDHQSRCIG-ELS-----FRSEVRSVKLRRDRI-IV  190 (368)
Q Consensus       149 ~d~~------------------------~-------~~~~i~vwd~~~~~~~~-~~~-----~~~~v~~~~~~~~~~-~l  190 (368)
                      .|..                        |       ..-.+.|+|+.+++... ...     ....+..+.|.+++. ++
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            2210                        0       01145667777665421 111     344678899999988 44


Q ss_pred             E--e-----CCcEEEEEcCCCeEEEEEec-cCCCe---eEEEEe-cCCCeEEEEeecCCCCeEEE--EecCcceeeeeec
Q 017642          191 V--L-----EQKIFVYNFADLKLLHQIET-IANPK---GLCAVS-QGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMA  256 (368)
Q Consensus       191 ~--~-----d~~i~vwd~~~~~~~~~~~~-~~~~v---~~~~~~-~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~  256 (368)
                      +  .     ...+.++|..++++...+.. ....+   ....+. +++..++.+..  .+|.-+|  .+..+.....+..
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~--~~G~~hly~~~~~~~~~~~lT~  277 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE--RDGYRHLYLYDLDGGKPRQLTS  277 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE--TTSSEEEEEEETTSSEEEESS-
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE--cCCCcEEEEEcccccceecccc
Confidence            4  2     23677888877755433322 22222   245554 77877666653  6666555  5666666667776


Q ss_pred             cCcceEE-EEECCCCCEE-EEEeCCC--c-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          257 HDSRIAC-FALTQDGQLL-ATSSTKG--T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       257 ~~~~i~~-v~~sp~g~~l-~s~~~dg--~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      ....|.. +.++++++.| +++..++  . .|..-++..+..+..+...  .+.-..+.|||+|++++-.
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence            6677755 6788887744 4555422  2 1555566623444455542  2222699999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.7e-05  Score=68.92  Aligned_cols=208  Identities=13%  Similarity=0.172  Sum_probs=138.0

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC--C-cEEEEEe-cCCceeEEEEeeCccEEEe----CCcEEEE
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--S-RCIGELS-FRSEVRSVKLRRDRIIVVL----EQKIFVY  199 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~--~-~~~~~~~-~~~~v~~~~~~~~~~~l~~----d~~i~vw  199 (368)
                      |+..+..+... ...++.+++.|     |.++.|--..  + +.+..+. |-..|.+++.+-++.++.+    |..++++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            34444444333 33445566666     9999998433  1 2233333 7788999999999988882    8899999


Q ss_pred             EcCCCeEEEEEeccCCCeeE-EEEecCCCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCCCCEEEE
Q 017642          200 NFADLKLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLAT  275 (368)
Q Consensus       200 d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~g~~l~s  275 (368)
                      |+++...+..++...-+-.+ +..++....-.++.+.-.++.+.+.+..+.   ......-|..+|.++.+.+-+..+++
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence            99876655433322222222 222333333345555567788888665442   22334569999999999999999999


Q ss_pred             EeCCCcEEEEEECCC------CceeEeeEe-------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          276 SSTKGTLVRIFNTLD------GTLLQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       276 ~~~dg~~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      ....|- |.-|....      .+....++.       ........++.|+|+|..+.+-+.|..|+++++.+++-..+..
T Consensus       162 iD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  162 IDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            999998 99998762      111111110       0134567899999999999999999999999999998765544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.25  E-value=0.00056  Score=62.20  Aligned_cols=221  Identities=12%  Similarity=0.045  Sum_probs=122.6

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  175 (368)
                      +..+..++ ++.+..+|.++++......+.  ... ....... ++.+++... +     +.|.-+|.++|+.+..+...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~-~ssP~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEA-LSRPVVS-DGLVLVHTS-N-----GMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCC--Cce-ecCCEEE-CCEEEEECC-C-----CEEEEEEccCCCEeeeecCC
Confidence            34455555 777999998888887665542  111 1111122 334444433 2     89999999999998887632


Q ss_pred             Cce------eEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCC----C---eeEEEEec--CCCeEEEEeecCCC
Q 017642          176 SEV------RSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN----P---KGLCAVSQ--GVGSLVLVCPGLQK  238 (368)
Q Consensus       176 ~~v------~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~~~l~~~g~~d  238 (368)
                      ...      ...... ++..++  .++.+..+|.++|+.+........    .   ...+..+|  .++.+++   ++.+
T Consensus       190 ~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~---~~~~  265 (394)
T PRK11138        190 VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA---LAYN  265 (394)
T ss_pred             CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE---EEcC
Confidence            211      111122 334444  588899999999987665432110    0   00011111  2333333   2246


Q ss_pred             CeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCE
Q 017642          239 GQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (368)
Q Consensus       239 g~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  317 (368)
                      |.+.. +..+++.+.....  .....+..  .+..|+.++.+|. |..+|..+|+.+-......+ ....+...  .+..
T Consensus       266 g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~  337 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGY  337 (394)
T ss_pred             CeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCE
Confidence            66666 4444444332211  11112222  4557777888999 99999999987654432111 11222222  2456


Q ss_pred             EEEEeCCCeEEEEEccCCCCCC
Q 017642          318 LAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      |+.++.||.|++.|..+++..-
T Consensus       338 l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        338 LVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             EEEEeCCCEEEEEECCCCCEEE
Confidence            7788899999999999887543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.00012  Score=68.43  Aligned_cols=162  Identities=14%  Similarity=0.152  Sum_probs=109.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC-----CC
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-----VG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~  227 (368)
                      |.|++++.. +.....+.|...      ..+|.+++   .||+|.|..+-+.+...++. ...++.+++++|+     .+
T Consensus        59 g~v~~~~~~-~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   59 GAVYLTTCQ-GNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             ceEEEEecC-Cccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhh
Confidence            888888843 333333334433      56788888   58999999988877766664 4568889999998     22


Q ss_pred             eEEEEeecCCCCeEEEEecC----cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--
Q 017642          228 SLVLVCPGLQKGQVRVEHYA----SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--  301 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~----~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--  301 (368)
                      . + + +|+.-| +.+...+    ...+ .+....++|.++.|  .|.++|-++.+|  |+|||+.+++.+..+....  
T Consensus       131 ~-f-v-~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  131 Q-F-V-SGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPTRQRLTNIPPPSQS  201 (846)
T ss_pred             h-e-e-ecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC--cEEEeccccceeeccCCCCCC
Confidence            2 2 3 366677 5553322    2222 45667789999999  688999999998  7999999988876665421  


Q ss_pred             --CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          302 --DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       302 --~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                        ....-..+.|.++.++++  |...+|+|..++.+.
T Consensus       202 ~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~~~~  236 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDEDRLVI--GWGDSVKICSIKKRS  236 (846)
T ss_pred             CCcccCCCceEecCCCeEEE--ecCCeEEEEEEeccc
Confidence              111234678877655443  345579999998443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.20  E-value=0.00094  Score=58.88  Aligned_cols=170  Identities=14%  Similarity=0.158  Sum_probs=105.4

Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEee---C----ccEEE--e----------C-CcEEEEEcCCC----eEEEE
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRR---D----RIIVV--L----------E-QKIFVYNFADL----KLLHQ  209 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~---~----~~~l~--~----------d-~~i~vwd~~~~----~~~~~  209 (368)
                      ..|++.|..+.+.+..+.  ....+.+++.-.   +    ..+++  .          . |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            468999988888887776  555666665433   1    34444  0          2 88999999873    22222


Q ss_pred             E--eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce-eeeeeccC--cceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          210 I--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       210 ~--~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~~~--~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      +  ....++|.+++--  ++. ++++   .++.|.++...... +.....+.  ..+.++..  .+.+++.|..... |.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~-lv~~---~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~s-v~  152 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGR-LVVA---VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKS-VS  152 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTE-EEEE---ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSS-EE
T ss_pred             EEEEeecCcceEhhhh--CCE-EEEe---ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccC-EE
Confidence            2  2346677766554  444 3333   24788886665544 44333332  25566655  4668999988777 88


Q ss_pred             EEECCC-CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          285 IFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       285 iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ++.... ...+..+........++++.|-.|++.++.+..+|.|.++....
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            775443 33344444433455789999987778899999999999999964

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.18  E-value=1.5e-06  Score=81.42  Aligned_cols=212  Identities=13%  Similarity=0.109  Sum_probs=136.9

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .+.|+..-+|++|+-+.++|++|. .+.|++|++.++...  .... .|...+..+..+.++....+.+.-   +.--..
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~n-cH~SavT~vePs~dgs~~Ltsss~---S~Plsa 1170 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVN-CHQSAVTLVEPSVDGSTQLTSSSS---SSPLSA 1170 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--cccc-ccccccccccccCCcceeeeeccc---cCchHH
Confidence            345677889999999999999999 777999999887766  3343 678888888777666544433221   113567


Q ss_pred             EEeCCC-CcEEEEEecCCceeEEEEeeCccE--EE-eCCcEEEEEcCCCeEEEEE-e---ccCCCeeEEEEecCCCeEEE
Q 017642          160 IWDDHQ-SRCIGELSFRSEVRSVKLRRDRII--VV-LEQKIFVYNFADLKLLHQI-E---TIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       160 vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~--l~-~d~~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +|++.. +...+.|.   .-.++.|+.....  +. ......+||++++..+.++ .   +....-++..|+|+.+   +
T Consensus      1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---L 1244 (1516)
T ss_pred             HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---e
Confidence            899753 44444443   2346667664322  22 4568899999998776653 2   1222336788999987   3


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      +.   +||.  +|+... ..+..+......+ .=.|+|.|..++.-+      .|||+++.+.++.+..-    .-..+.
T Consensus      1245 Il---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L----dqc~Vt 1308 (1516)
T KOG1832|consen 1245 IL---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL----DQCAVT 1308 (1516)
T ss_pred             Ee---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccc----cceEEE
Confidence            32   4663  376654 3344444333222 235899998776533      69999999888776642    235677


Q ss_pred             EecCCCEEEE
Q 017642          311 FSSNAQWLAV  320 (368)
Q Consensus       311 ~sp~~~~l~s  320 (368)
                      |+..|..++.
T Consensus      1309 FNstG~VmYa 1318 (1516)
T KOG1832|consen 1309 FNSTGDVMYA 1318 (1516)
T ss_pred             eccCccchhh
Confidence            8887776654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.13  E-value=8.8e-05  Score=70.16  Aligned_cols=168  Identities=14%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ..+..+|+++.+..+... ..+.|.-|+.  ++++++   ..|+|.+-|.++.+.++++..|.+.+..+.  -.|+. ++
T Consensus       157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNl-Li  231 (1118)
T KOG1275|consen  157 EKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNL-LI  231 (1118)
T ss_pred             hheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCe-EE
Confidence            578888998888877776 3445665554  444444   679999999999999999999999887544  45553 33


Q ss_pred             EeecC--------CCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC-Cce-eEeeEe
Q 017642          232 VCPGL--------QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD-GTL-LQEVRR  299 (368)
Q Consensus       232 ~~~g~--------~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~-~~~-~~~~~~  299 (368)
                      .| |.        .|..|+||+... +.+..+.-+.++ .-+.|+|.-. .+++++..|. ..+-|..+ +.+ ...+..
T Consensus       232 tC-G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~lsNP~~~~~~v  308 (1118)
T KOG1275|consen  232 TC-GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATLSNPPAGVKMV  308 (1118)
T ss_pred             Ee-ecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccccCCCccceeEE
Confidence            33 43        255567766544 444444444443 5677888654 7888888898 99998432 111 122222


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ......+..++++++|+.|+.|..+|.|.+|.
T Consensus       309 ~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  309 NPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            22445699999999999999999999999998

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.13  E-value=0.00072  Score=62.90  Aligned_cols=186  Identities=8%  Similarity=-0.068  Sum_probs=102.5

Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642           92 SFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (368)
Q Consensus        92 ~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~  169 (368)
                      =+.+||+.+...+  .+.+.+.|.++.+......+  ...-  -.+.+++++..++..+.+.. ..+++...+..+...+
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnp--d~v~~spdGk~afvTsyNsE-~G~tl~em~a~e~d~~  273 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNL--DNVDTDYDGKYAFSTCYNSE-EGVTLAEMMAAERDWV  273 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCc--ccceECCCCCEEEEeccCcc-cCcceeeeccccCceE
Confidence            3456777664334  33477777765544433333  2222  22334444444433321100 0133444443332222


Q ss_pred             EEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCC-----CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642          170 GELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (368)
Q Consensus       170 ~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i  243 (368)
                      ..+.-.. +  .++.++|++.. .++.|.+.|.++     .+.+..+.... ....+.++|||+++++  ++..+.++.|
T Consensus       274 vvfni~~-i--ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyV--anklS~tVSV  347 (635)
T PRK02888        274 VVFNIAR-I--EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIA--NGKLSPTVTV  347 (635)
T ss_pred             EEEchHH-H--HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEE--eCCCCCcEEE
Confidence            2222110 0  02345676655 567899999988     45666665444 3456899999997554  4667889998


Q ss_pred             EecCcce-------------eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          244 EHYASKR-------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       244 ~~~~~~~-------------~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .+.....             +.....-.+ ....+|.++|+.+.+...|.. |..||+.+
T Consensus       348 IDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsq-v~kwn~~~  405 (635)
T PRK02888        348 IDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA  405 (635)
T ss_pred             EEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecce-eEEEehHH
Confidence            5544311             222222222 345789999998888889998 99999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.0076  Score=54.41  Aligned_cols=239  Identities=15%  Similarity=0.126  Sum_probs=152.5

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ....+...++|..+....  .+.+.+.+  ........... .....-..+..++.+. .++....+     +.|.+.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~--~~~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~  103 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVID--ATSNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDT  103 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecc--cccceeeeecc-CCCccccceeeCCCCCeEEEecCCC-----CeEEEEcC
Confidence            445567788886555544  22233333  22111111111 1112222334433333 44444433     89999998


Q ss_pred             CCCcEEEEEecCCceeEEEEeeCccEEE---e---CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      .+.+.............+++++++..+.   .   ++.+.+.|-.+.+.+........+ ..+++.|+|+.++++-  ..
T Consensus       104 ~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~  180 (381)
T COG3391         104 ATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD  180 (381)
T ss_pred             cccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence            8888888887555888999999986665   2   578999998888888876554445 6799999999866654  45


Q ss_pred             CCeEEEEecCcceeee-----eeccCcceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEe-eEeccCcccEEE
Q 017642          238 KGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQE-VRRGADRAEIYS  308 (368)
Q Consensus       238 dg~i~i~~~~~~~~~~-----~~~~~~~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~-~~~~~~~~~v~~  308 (368)
                      ++.+.+.+.....+..     ...-......+.++++|.++......   +. +.+.|..++..... +... .. ....
T Consensus       181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~  257 (381)
T COG3391         181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRG  257 (381)
T ss_pred             CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCc
Confidence            7888886655544442     11112234678899999966655444   47 99999988877655 2221 12 4567


Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEEccCCCCCC
Q 017642          309 LAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       309 l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~  339 (368)
                      +.++|+|+.+.+.. ..+.+.+.|..+.....
T Consensus       258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~  289 (381)
T COG3391         258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVVK  289 (381)
T ss_pred             eeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence            89999999988774 45789998888765544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00013  Score=68.67  Aligned_cols=102  Identities=11%  Similarity=0.197  Sum_probs=76.1

Q ss_pred             EEEcCCCCEEEEEe---C--CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           91 ISFNQDHGCFAAGT---D--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        91 ~~~s~~g~~l~~~~---d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      ..|+|...++|+++   .  +.|.||- ++++..  +..  ..+..+.+++|+|....++.+-..     |.+.+|...+
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq--r~V--t~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~~   90 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ--RDV--TYPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTNT   90 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCC--ccc--ccceehhhhccChHHHHHhhcccc-----ceeEEEecCC
Confidence            46888888888876   2  3388884 444433  223  345667789999999999988776     9999999766


Q ss_pred             CcEEEEEe-cCCceeEEEEeeCccEEE-e--CCcEEEEEcC
Q 017642          166 SRCIGELS-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFA  202 (368)
Q Consensus       166 ~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~  202 (368)
                      .+.-.... |+.+|..+.|+++|..++ .  -|.+.+|...
T Consensus        91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            55433333 999999999999999888 3  4789999764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.00028  Score=66.54  Aligned_cols=186  Identities=16%  Similarity=0.248  Sum_probs=110.8

Q ss_pred             eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCc-eeEEEEeeCccEEE---eC-C----cEEEEEcCCC---
Q 017642          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE-VRSVKLRRDRIIVV---LE-Q----KIFVYNFADL---  204 (368)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~l~---~d-~----~i~vwd~~~~---  204 (368)
                      ++++..++-|..+     |.|.+++ +.-+.++.++ +... |..+-...+..+++   .| +    .+++||++.-   
T Consensus        32 ~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   32 SSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             cCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            3444444444544     8888887 4445556666 5555 44444444445555   22 2    6999999532   


Q ss_pred             ---eEE---EEEe----ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC---cceeee--eeccCcceEEEEECCC
Q 017642          205 ---KLL---HQIE----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA---SKRTKF--IMAHDSRIACFALTQD  269 (368)
Q Consensus       205 ---~~~---~~~~----~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~---~~~~~~--~~~~~~~i~~v~~sp~  269 (368)
                         +++   +.+.    ....++.+++++.+-+.  +|+ |-.+|.|..+.-+   .+-.+.  ......+|+.+++..+
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~--Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT--IVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccE--EEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence               333   2221    12446778888888553  554 7889998873322   121222  2234678999999999


Q ss_pred             CCE-EEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          270 GQL-LATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       270 g~~-l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ++. +.++... . |.+|.+....+... +..  |...+.|..|++....+++++. ..|.+|+....+.
T Consensus       183 ~~s~lFv~Tt~-~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  183 GKSVLFVATTE-Q-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP  247 (933)
T ss_pred             CceeEEEEecc-e-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence            986 4444443 4 89999874332222 333  6678889998876554655543 4588888775444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.0069  Score=54.69  Aligned_cols=216  Identities=13%  Similarity=0.097  Sum_probs=137.0

Q ss_pred             EEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe--EEEEecC-CCCCCCCCcEEEEe
Q 017642           88 LLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGG-PDPQYPLNKVMIWD  162 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~-~d~~~~~~~i~vwd  162 (368)
                      -..+++++++..+....  ++.|.+.|............  +.  .-..+.+++++  .+++-.+ .+     +.+.+.|
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvid  146 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVID  146 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCC-----ceEEEEe
Confidence            45678888888665554  67799999665554433222  22  33455555544  4444443 24     8999999


Q ss_pred             CCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEE-----EEeccCCCeeEEEEecCCCeEEEEe
Q 017642          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLH-----QIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      ..+++...+......-..++++|+|..+.    .++.|.+.|.......+     .+.... .-..+.+.+++...+++.
T Consensus       147 ~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~  225 (381)
T COG3391         147 AATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVAN  225 (381)
T ss_pred             CCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEe
Confidence            99999888865333238999999998665    37899999976655443     122222 224588999999888877


Q ss_pred             ecCCCCeEEEEecCcceeeee--eccCcceEEEEECCCCCEEEEEeCC-CcEEEEEECCCCceeEeeEeccC-cccEEEE
Q 017642          234 PGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGAD-RAEIYSL  309 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~v~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~~~~~~~~~~-~~~v~~l  309 (368)
                      .++.++.+...+.....+...  .........+.++|+|+.+.+.... +. +.+-|..+......+..+.+ ...+..+
T Consensus       226 ~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~  304 (381)
T COG3391         226 DGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSI  304 (381)
T ss_pred             ccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceec
Confidence            554446777644444333332  1111145678899999988877554 66 99999888887766554322 1235556


Q ss_pred             EEecC
Q 017642          310 AFSSN  314 (368)
Q Consensus       310 ~~sp~  314 (368)
                      ++.+.
T Consensus       305 ~~~~~  309 (381)
T COG3391         305 AISPL  309 (381)
T ss_pred             cceee
Confidence            65553

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.03  E-value=0.0038  Score=51.81  Aligned_cols=236  Identities=17%  Similarity=0.130  Sum_probs=133.1

Q ss_pred             EEEEEEcCCCC-EEEEEe-CCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDHG-CFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g~-~l~~~~-d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      -..|+|+|.-. -++.+. -++ ..++|.+..+......-. ......-.=.|++++.++.....|..-..|.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            34567777643 445555 444 677887766554332221 22222223457889988888777765566899999987


Q ss_pred             CC-cEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEE--------------------EcCCCeEEEEEe----ccCCCe
Q 017642          165 QS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVY--------------------NFADLKLLHQIE----TIANPK  217 (368)
Q Consensus       165 ~~-~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vw--------------------d~~~~~~~~~~~----~~~~~v  217 (368)
                      .+ +.+.++. |.-.-..+.+.+||+.++ .+|-|...                    |..+|+++....    .+...+
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            54 5666776 777888999999999988 66655554                    222333322211    122234


Q ss_pred             eEEEEecCCCeEEEEee--cC-CCCeEEE-EecCcceeeeee-------ccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          218 GLCAVSQGVGSLVLVCP--GL-QKGQVRV-EHYASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~--g~-~dg~i~i-~~~~~~~~~~~~-------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      ..++...||.- ++.|-  |. .|---.+ --..++.+..+.       .....|-+|+.+-+..+++..+-.|....+|
T Consensus       229 RHld~g~dgtv-wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~  307 (366)
T COG3490         229 RHLDIGRDGTV-WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW  307 (366)
T ss_pred             eeeeeCCCCcE-EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence            45555555541 11110  00 0000011 111122222221       2234678888887666777777666658999


Q ss_pred             ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      |..+|..+..-...    ....++  +...-+++.+.+|.|.++.
T Consensus       308 da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         308 DAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EcCCCcEEeccccc----ccccce--eccCceEEecCCceEEecc
Confidence            99999988654431    122333  3334455566788888873

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.01  E-value=0.0016  Score=59.13  Aligned_cols=169  Identities=13%  Similarity=0.167  Sum_probs=92.0

Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEe--ccCCCeeEE-EE-ecCC-Ce
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--TIANPKGLC-AV-SQGV-GS  228 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~-~~-~~~~-~~  228 (368)
                      .|++|+ ..|+.+..+. ..+.+.++.|+.+..+++  .||.+++||+. |+....+.  .....+..+ .+ ...+ .+
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence            589998 6777888877 458999999999887777  79999999986 33311111  011112111 11 1111 33


Q ss_pred             EEEEeecCCCCeEEE-EecCcc-eeeee---ec-----cCcc-eEE-EEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          229 LVLVCPGLQKGQVRV-EHYASK-RTKFI---MA-----HDSR-IAC-FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i-~~~~~~-~~~~~---~~-----~~~~-i~~-v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      +++.+   .++.+.+ .+.... ..+.+   ..     +... ... ..++.+....+....++. +.+.+-...+.   
T Consensus       140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ---  212 (410)
T ss_pred             EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence            33332   2455554 332221 11111   11     0000 000 223444444444444444 55443222211   


Q ss_pred             eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +.   ..+++..|++||+|++||.-..+|.+.|....-.+.
T Consensus       213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~  250 (410)
T PF04841_consen  213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK  250 (410)
T ss_pred             cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence            11   235799999999999999999999998887655443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.99  E-value=0.00091  Score=60.77  Aligned_cols=114  Identities=17%  Similarity=0.226  Sum_probs=76.5

Q ss_pred             EecCCceeEEEEeeCcc-EEE-------eCC----cEEEEEcCCCeE--EEEE-eccCCCeeEEEEecCCCeEEEEeecC
Q 017642          172 LSFRSEVRSVKLRRDRI-IVV-------LEQ----KIFVYNFADLKL--LHQI-ETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       172 ~~~~~~v~~~~~~~~~~-~l~-------~d~----~i~vwd~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +..+....++.|+-... .+.       .+|    .-.+|++...+.  +... -.....+.+++++|+.+.+++   |+
T Consensus       202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl---GC  278 (545)
T PF11768_consen  202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL---GC  278 (545)
T ss_pred             EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE---Ee
Confidence            33444556777765322 221       133    244566644332  2111 135567889999999998665   55


Q ss_pred             CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .||.|.+|+...+..... ...-..+.++|+|+|.++++|+..|. +.+||+.-
T Consensus       279 ~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL  330 (545)
T PF11768_consen  279 EDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL  330 (545)
T ss_pred             cCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence            899999988776544333 44456789999999999999999999 99999863

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.98  E-value=0.005  Score=52.96  Aligned_cols=193  Identities=14%  Similarity=0.183  Sum_probs=116.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEE-------------EcccCCceeEEEEE---EeCCeEEEEecCCCC
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVEML---FRCNILALVGGGPDP  151 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~  151 (368)
                      |..+...++-+.|++-+|+.+.+++++........             .+  .....+..++   .......++.+-.  
T Consensus        38 I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~k--  113 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVK--  113 (275)
T ss_pred             EEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc--cccCCeeEEeeccccccceEEEEEEC--
Confidence            99999999888888888899999998765443311             12  1222333333   2233334444333  


Q ss_pred             CCCCCcEEEEeCCCC-----cEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccC------------
Q 017642          152 QYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA------------  214 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~------------  214 (368)
                          .+|.+|.....     +..+++...+.+..++|..+...+...+...+.|+.++.....+....            
T Consensus       114 ----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  114 ----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             ----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence                67888876542     566777788999999999666555578889999998776544432111            


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (368)
                      .++..+.+. ++ . ++++   .+..-.+-+..+...+  .+.- ...+..+++  ...||+.... +. |.||++.+++
T Consensus       190 ~~~~~~~~~-~~-e-~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~-iEV~~~~~~~  258 (275)
T PF00780_consen  190 KPLGIFQLS-DN-E-FLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NS-IEVRSLETGE  258 (275)
T ss_pred             CceEEEEeC-Cc-e-EEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CE-EEEEECcCCc
Confidence            122222322 22 3 3333   1222222334443332  2221 234556666  3457776665 45 9999999999


Q ss_pred             eeEeeEe
Q 017642          293 LLQEVRR  299 (368)
Q Consensus       293 ~~~~~~~  299 (368)
                      .++.+..
T Consensus       259 lvQ~i~~  265 (275)
T PF00780_consen  259 LVQTIPL  265 (275)
T ss_pred             EEEEEEC
Confidence            9988875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.97  E-value=0.0066  Score=49.73  Aligned_cols=127  Identities=9%  Similarity=0.026  Sum_probs=80.2

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  175 (368)
                      ..+++.|+ .+.+.--|..++....+..+  +.+.....+. -++. .++++-.      |.+++.+.++|+....+.-.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdf-VV~GCy~------g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDF-VVLGCYS------GGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCE-EEEEEcc------CcEEEEEecchhheeeeeeh
Confidence            34666677 55577777777777766665  4555555444 2333 4444433      89999999999888888744


Q ss_pred             CceeEE-EEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          176 SEVRSV-KLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       176 ~~v~~~-~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +.|.+- ...+++.++.   .|++.+..|.++..++...+...+....-++.+-...++++.
T Consensus        93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~  154 (354)
T KOG4649|consen   93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI  154 (354)
T ss_pred             hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence            444433 2455665555   699999999999888877654444334445555334444443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.94  E-value=0.0071  Score=56.59  Aligned_cols=234  Identities=11%  Similarity=0.099  Sum_probs=125.6

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcceEEEcccCCc---eeE-EEEEEeCCeEEEEecCCCCCC----CCCcEEEEeCCCCcE
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGV-VEMLFRCNILALVGGGPDPQY----PLNKVMIWDDHQSRC  168 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~s~~~d~~~----~~~~i~vwd~~~~~~  168 (368)
                      ..++.++ ++.|.-+|.++++......+. ...   ..+ ....... +.+++..... .+    .++.|.-+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~-~~v~vg~~~~-~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVK-KLVIIGSSGA-EFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEEC-CEEEEecccc-ccccCCCCcEEEEEECCCCce
Confidence            4555555 777888998888877665543 110   001 1112222 3333332110 00    127899999999998


Q ss_pred             EEEEecC-Cc--------------------e-eEEEEee-CccEEE--eCC------------------cEEEEEcCCCe
Q 017642          169 IGELSFR-SE--------------------V-RSVKLRR-DRIIVV--LEQ------------------KIFVYNFADLK  205 (368)
Q Consensus       169 ~~~~~~~-~~--------------------v-~~~~~~~-~~~~l~--~d~------------------~i~vwd~~~~~  205 (368)
                      +..+... ..                    + ...++.+ .+.+++  .++                  .|.-+|+++|+
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            8877621 10                    1 1233443 344444  343                  69999999999


Q ss_pred             EEEEEeccCCCee------EEEEe----cCCCeEEEEeecCCCCeEEE-EecCcceeeeeeccCcceEEEEECCCCCEEE
Q 017642          206 LLHQIETIANPKG------LCAVS----QGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLA  274 (368)
Q Consensus       206 ~~~~~~~~~~~v~------~~~~~----~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~  274 (368)
                      .+..++.......      ...+.    -++....+++.++.+|.+.. +..+++.+-.....   ...++.+| + .++
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vy  342 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVY  342 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEE
Confidence            9887753211110      01111    23332222333667888776 55566655443321   11233344 2 222


Q ss_pred             EE------------------eCCCcEEEEEECCCCceeEeeEeccCc------ccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642          275 TS------------------STKGTLVRIFNTLDGTLLQEVRRGADR------AEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       275 s~------------------~~dg~~i~iwd~~~~~~~~~~~~~~~~------~~v~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                      .+                  ..+|. |.-.|+.+|+.+-+.....+.      .+...-...-.+..|+.++.||.|+.+
T Consensus       343 v~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al  421 (488)
T cd00216         343 LGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF  421 (488)
T ss_pred             EccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence            21                  23567 888899898887766542111      111111111245788888899999999


Q ss_pred             EccCCCCCCC
Q 017642          331 NLKVNSGSAR  340 (368)
Q Consensus       331 d~~~~~~~~~  340 (368)
                      |.++++..-.
T Consensus       422 d~~tG~~lW~  431 (488)
T cd00216         422 DATTGKELWK  431 (488)
T ss_pred             ECCCCceeeE
Confidence            9999987644

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.93  E-value=0.0087  Score=50.03  Aligned_cols=192  Identities=9%  Similarity=0.063  Sum_probs=106.9

Q ss_pred             CCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE-e--CCcEEEEE
Q 017642          127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV-L--EQKIFVYN  200 (368)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~--d~~i~vwd  200 (368)
                      +-...+..+.|+++ +..++..+..     +.|..++. +|+.++.+.  .-+..-+|++..++.+++ .  ++.+.+++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            34445888999875 4455555554     88988995 688888887  346789999999998888 3  68899998


Q ss_pred             cCCC------eEEEEEe-----ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc----ceeee--------eecc
Q 017642          201 FADL------KLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKF--------IMAH  257 (368)
Q Consensus       201 ~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~----~~~~~--------~~~~  257 (368)
                      +...      .....+.     .+...+-.++|.+.++.++++.   +..-..++....    ..+..        ....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccce
Confidence            8331      1112222     1334577899999999887764   233334422221    11110        1123


Q ss_pred             CcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEecc--Cc-----ccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          258 DSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DR-----AEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       258 ~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~-----~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                      ...+.+++++|... +++....... |.++| .+|+.+..+....  |.     ...-.|+|.++|++.++ ++.+..++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence            34578999999655 5555555555 99999 6788776655421  11     24678999999976655 56776665


Q ss_pred             E
Q 017642          330 F  330 (368)
Q Consensus       330 w  330 (368)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            5

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.92  E-value=0.0018  Score=62.49  Aligned_cols=127  Identities=17%  Similarity=0.239  Sum_probs=86.9

Q ss_pred             CcEEEEeCCCCcEEEEEecCCc--eeEEEEe-------eCccEEE-eCCcEEEEEcCCC--eEEEE-Ee--ccCCCeeEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSE--VRSVKLR-------RDRIIVV-LEQKIFVYNFADL--KLLHQ-IE--TIANPKGLC  220 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~-------~~~~~l~-~d~~i~vwd~~~~--~~~~~-~~--~~~~~v~~~  220 (368)
                      +.|+-.|++.|+.+.++.....  |..++-.       +...++. .+..+..||.|-.  +++.. ..  .......|+
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            7899999999999999993333  4444332       2233444 6889999999753  22211 10  123445667


Q ss_pred             EEecCCCeEEEEeecCCCCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      +-..+|.   +|. |+.+|.||+++..+..-++ +.+-..+|..|..+.||++|++.+.. . |.+++.
T Consensus       584 aTt~~G~---iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t  646 (794)
T PF08553_consen  584 ATTEDGY---IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT  646 (794)
T ss_pred             EecCCce---EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence            7776763   555 8899999998766544333 55778899999999999987766644 4 777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.90  E-value=6.2e-06  Score=74.73  Aligned_cols=202  Identities=12%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE-EEEe--cCCceeEEEEee-CccEEE-------eCCcEEEEE
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS--FRSEVRSVKLRR-DRIIVV-------LEQKIFVYN  200 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~--~~~~v~~~~~~~-~~~~l~-------~d~~i~vwd  200 (368)
                      +.+..++.+...++.|..+     |.|-+-.++...-. .++.  +....++++|++ |...++       .|..+.|||
T Consensus        61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4444444454455555555     88888776544222 3333  777899999998 444454       377899999


Q ss_pred             cCCC--e--EEEEEec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECC-CCCEEE
Q 017642          201 FADL--K--LLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLA  274 (368)
Q Consensus       201 ~~~~--~--~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~  274 (368)
                      +.++  .  .-..+.. ......+++|-.+.+  ++. +|.....+.+.+..........-.+..+..+..+| .+.|++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcc--hhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence            9876  1  1112222 223445677775544  233 47777788886655443333333344567778888 667777


Q ss_pred             EEeCCCcEEEEEE-CCCCc-eeEeeEecc--CcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCCCCC
Q 017642          275 TSSTKGTLVRIFN-TLDGT-LLQEVRRGA--DRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSARSEP  343 (368)
Q Consensus       275 s~~~dg~~i~iwd-~~~~~-~~~~~~~~~--~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~  343 (368)
                      +-. ||. |-+|| .++-+ ++..+....  ....+..++|+|... .+++.. +.++|+++|+..-......++
T Consensus       213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn  285 (783)
T KOG1008|consen  213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN  285 (783)
T ss_pred             ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc
Confidence            655 888 99999 33322 222222110  112489999999643 445554 567899999976555444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.84  E-value=0.019  Score=51.07  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=99.1

Q ss_pred             CCCEEEEEe--CCeEEEEEecCC--CcceEEEccc------CCceeEEEEEEeCCeEEEEec-CCCCCCCCCcEEEEeCC
Q 017642           96 DHGCFAAGT--DHGFRIYNCDPF--REIFRRDFER------GGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        96 ~g~~l~~~~--d~~i~iw~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~~~i~vwd~~  164 (368)
                      +.++|+..+  .+.|.|.|+.+.  +..+.+.++.      ..-..-.....-+++.+++++ ++...-..|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            466888877  555999998743  3333344431      011111222333556333332 21111233678899988


Q ss_pred             CCcEEEEEec----CCceeEEEEeeCccEEE-----------------------eCCcEEEEEcCCCeEEEEEeccCCC-
Q 017642          165 QSRCIGELSF----RSEVRSVKLRRDRIIVV-----------------------LEQKIFVYNFADLKLLHQIETIANP-  216 (368)
Q Consensus       165 ~~~~~~~~~~----~~~v~~~~~~~~~~~l~-----------------------~d~~i~vwd~~~~~~~~~~~~~~~~-  216 (368)
                      +.+.......    ..--+.+-|.|....++                       ...++++||+.+.+.++++...... 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7887777762    22345666777666555                       1468999999999999999755432 


Q ss_pred             -eeEEEEecC--CCeEEEEeecCCCCeEEEEec-Cc-----ceeeeeec-----------------cCcceEEEEECCCC
Q 017642          217 -KGLCAVSQG--VGSLVLVCPGLQKGQVRVEHY-AS-----KRTKFIMA-----------------HDSRIACFALTQDG  270 (368)
Q Consensus       217 -v~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~-~~-----~~~~~~~~-----------------~~~~i~~v~~sp~g  270 (368)
                       .-.+.|..+  ...-++.+.  -...|..|-. ..     +.+..+..                 -..-|+.|.+|.|.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             ceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence             223555444  344344332  2345544322 21     22222211                 12347899999999


Q ss_pred             CEEEEEeC-CCcEEEEEECCCCc---eeEeeEec--------------cCcccEEEEEEecCCCEEEEE
Q 017642          271 QLLATSST-KGTLVRIFNTLDGT---LLQEVRRG--------------ADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       271 ~~l~s~~~-dg~~i~iwd~~~~~---~~~~~~~~--------------~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      ++|...+. +|. |+.||+.+-.   .+.++..+              .-.+...-|..|-||+.|...
T Consensus       324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            98876665 777 9999998632   23222211              012345788999999988755

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.81  E-value=0.0068  Score=58.67  Aligned_cols=132  Identities=14%  Similarity=0.265  Sum_probs=87.1

Q ss_pred             CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC-------CeEEEEeecCCCCeEEEEecCcc--eeeee----eccCc
Q 017642          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-------GSLVLVCPGLQKGQVRVEHYASK--RTKFI----MAHDS  259 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~l~~~g~~dg~i~i~~~~~~--~~~~~----~~~~~  259 (368)
                      ...|+-.|++.|+.+..+..+... ....+.|+.       ...++..   .+..+..|+.+..  .+..-    .....
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccCC
Confidence            468999999999999999876543 234455542       2334433   3445544444332  22111    12345


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ..+|++-+.+| +||+|+.+|. ||+||- .|..-++.-.+ -..+|.+|..+.||++|++.+ +..|.+++..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            67888887777 6999999999 999994 44433332222 457999999999999988766 5578888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00013  Score=66.36  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE-EEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ...|..+.|+|.-.++|++..+|. |.+..+. .+.+.++.-  +...++ +++|.|||+.||+|-.||+|++.|++++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            345788999999999999999999 9999876 787878875  344555 99999999999999999999999999998


Q ss_pred             CCCC
Q 017642          337 GSAR  340 (368)
Q Consensus       337 ~~~~  340 (368)
                      ...+
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            7755

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00012  Score=63.01  Aligned_cols=91  Identities=16%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             EecCcceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEE
Q 017642          244 EHYASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS  321 (368)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~  321 (368)
                      ...+.+....+..|...|..++|+|..+ ++..++.+.. |+|.|+++...+..+..  + ..+++++|.-|.. +++.|
T Consensus       179 ~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  179 ESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             ccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcceeEEe
Confidence            3344444556667888899999999887 7888888888 99999999999888886  3 6899999998765 56667


Q ss_pred             eCCCeEEEEEccCCCCC
Q 017642          322 SDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       322 s~dg~i~iwd~~~~~~~  338 (368)
                      -..|.|.|||++.++..
T Consensus       255 l~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             ccCceEEEEEccCCCch
Confidence            78999999999877643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.75  E-value=0.0033  Score=56.18  Aligned_cols=168  Identities=9%  Similarity=0.095  Sum_probs=92.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEecc-----------------CCC
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI-----------------ANP  216 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~-----------------~~~  216 (368)
                      +.+.++|+.+++..........+....|+|+|+.++  .++.|+++++.+++..+.-...                 -+.
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~  102 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR  102 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence            679999999976554444567899999999999998  7999999998777544322111                 112


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee--ccCc---ceEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDS---RIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~---~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (368)
                      -..+.|+||++.++++.  ..+..|..       +....  ....   .+..+.+---|.-....    . +.|+|+.++
T Consensus       103 ~~~~~WSpd~~~la~~~--~d~~~v~~-------~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v----~-l~v~~~~~~  168 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLR--FDEREVPE-------YPLPDYSPPDSQYPEVESIRYPKAGDPNPRV----S-LFVVDLASG  168 (353)
T ss_dssp             SBSEEE-TTSSEEEEEE--EE-TTS-E-------EEEEEESSSTESS-EEEEEE--BTTS---EE----E-EEEEESSST
T ss_pred             ccceEECCCCCEEEEEE--ECCcCCce-------EEeeccCCccccCCcccccccCCCCCcCCce----E-EEEEECCCC
Confidence            34678999999755433  22333332       11111  1111   23444442223211111    2 778899887


Q ss_pred             ceeE-eeEe--ccCcccEEEEEEecCCCEEEEE--eCCC---eEEEEEccCCCC
Q 017642          292 TLLQ-EVRR--GADRAEIYSLAFSSNAQWLAVS--SDKG---TVHVFNLKVNSG  337 (368)
Q Consensus       292 ~~~~-~~~~--~~~~~~v~~l~~sp~~~~l~s~--s~dg---~i~iwd~~~~~~  337 (368)
                      +... ....  ......+..+.|.++++.|+..  ..+.   .+.++|..+++.
T Consensus       169 ~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  169 KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence            7542 2220  1134578999999999844333  3222   366667765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.75  E-value=0.026  Score=49.75  Aligned_cols=230  Identities=12%  Similarity=0.020  Sum_probs=113.0

Q ss_pred             EEcCCCCEEEEEe--CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE--EecCCCCCCCCCcEEEEeCCC
Q 017642           92 SFNQDHGCFAAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL--VGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        92 ~~s~~g~~l~~~~--d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      +|.+||+.|+.++  ++.  +.+.|+++++....  .. +..........+++...+  +-.+       ..|+-.|+.+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL--Td-g~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T  111 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL--TD-GPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDT  111 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC--cc-CCCCCccceEEecCCCeEEEEECC-------CeEEEEECCc
Confidence            5678998776655  554  66666665444322  21 111111122233333333  3322       5899999999


Q ss_pred             CcEEEEEe-cCCceeEEEEe--eCccEEE------e-------------------CCcEEEEEcCCCeEEEEEeccCCCe
Q 017642          166 SRCIGELS-FRSEVRSVKLR--RDRIIVV------L-------------------EQKIFVYNFADLKLLHQIETIANPK  217 (368)
Q Consensus       166 ~~~~~~~~-~~~~v~~~~~~--~~~~~l~------~-------------------d~~i~vwd~~~~~~~~~~~~~~~~v  217 (368)
                      .+....+. ....+-...|.  .|+..++      .                   ...|...|+.+|+....+. ....+
T Consensus       112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wl  190 (386)
T PF14583_consen  112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWL  190 (386)
T ss_dssp             --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-E
T ss_pred             CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccc
Confidence            88777776 44444334553  4566554      0                   3457778888887655554 45567


Q ss_pred             eEEEEecCCCeEEEEee-cCCCCe-EEEEecC--cceeeeeeccC--cceEEEEECCCCCEEEEEe-----CCCcEEEEE
Q 017642          218 GLCAVSQGVGSLVLVCP-GLQKGQ-VRVEHYA--SKRTKFIMAHD--SRIACFALTQDGQLLATSS-----TKGTLVRIF  286 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~-g~~dg~-i~i~~~~--~~~~~~~~~~~--~~i~~v~~sp~g~~l~s~~-----~dg~~i~iw  286 (368)
                      ..+.++|....++..|= |-.+.. -|||..+  +...+.+..+.  ..+..=-|.+||..|..-+     .+.. |.-+
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~  269 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGY  269 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEee
Confidence            88899998877666542 223332 3565543  34444443332  2345557899998655422     2334 7778


Q ss_pred             ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC----------------eEEEEEccCCCC
Q 017642          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----------------TVHVFNLKVNSG  337 (368)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----------------~i~iwd~~~~~~  337 (368)
                      |..+++.......    .....+.-++||++++.=+.|.                -|++++++.++.
T Consensus       270 d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~  332 (386)
T PF14583_consen  270 DPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF  332 (386)
T ss_dssp             -TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred             CCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence            8888876533332    1345666789999887544432                466777776554

>smart00320 WD40 WD40 repeats

Probab=97.73  E-value=0.00013  Score=40.88  Aligned_cols=38  Identities=32%  Similarity=0.639  Sum_probs=32.3

Q ss_pred             ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +.+..+..  |...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556665  677899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.72  E-value=0.026  Score=48.90  Aligned_cols=197  Identities=14%  Similarity=0.118  Sum_probs=110.3

Q ss_pred             EEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC-C
Q 017642           90 HISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-Q  165 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~-~  165 (368)
                      .++++.||+++.+..   ...|.|.|++..+...+...    + .+..+...++..+..-|++      |.+.-..+. .
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----P-GC~~iyP~~~~~F~~lC~D------Gsl~~v~Ld~~  167 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----P-GCWLIYPSGNRGFSMLCGD------GSLLTVTLDAD  167 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----T-SEEEEEEEETTEEEEEETT------SCEEEEEETST
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC----C-CEEEEEecCCCceEEEecC------CceEEEEECCC
Confidence            358889999998876   55599999887665533222    1 2333344443333333332      888888776 5


Q ss_pred             CcEEEEEe-----cCCce-eEEEEeeC-ccEEE--eCCcEEEEEcCCCeE--EEEEec----------cCCCeeEEEEec
Q 017642          166 SRCIGELS-----FRSEV-RSVKLRRD-RIIVV--LEQKIFVYNFADLKL--LHQIET----------IANPKGLCAVSQ  224 (368)
Q Consensus       166 ~~~~~~~~-----~~~~v-~~~~~~~~-~~~l~--~d~~i~vwd~~~~~~--~~~~~~----------~~~~v~~~~~~~  224 (368)
                      |+...+..     ...++ ..-++... +.+++  .+|.|+-.|+.....  ...+..          ..+....+++++
T Consensus       168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~  247 (342)
T PF06433_consen  168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA  247 (342)
T ss_dssp             SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred             CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence            66553322     12222 23344443 44544  689999999865432  222211          112234578888


Q ss_pred             CCCeEEEEeecC-----CCCeEEEEecCc---ceeeeeeccCcceEEEEECCCCC-EEEEE-eCCCcEEEEEECCCCcee
Q 017642          225 GVGSLVLVCPGL-----QKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQ-LLATS-STKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       225 ~~~~~~l~~~g~-----~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~g~-~l~s~-~~dg~~i~iwd~~~~~~~  294 (368)
                      ..+.+++..-..     .|+--.||..+.   +.+..+.. ..++.+|+.+.+.+ +|++. ..++. |.|||..+|+.+
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~  325 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLV  325 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EE
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEE
Confidence            777766654211     233444544433   44444442 34677999999887 66554 45788 999999999999


Q ss_pred             EeeEe
Q 017642          295 QEVRR  299 (368)
Q Consensus       295 ~~~~~  299 (368)
                      +++..
T Consensus       326 ~~~~~  330 (342)
T PF06433_consen  326 RSIEQ  330 (342)
T ss_dssp             EEE--
T ss_pred             eehhc
Confidence            88875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.0051  Score=56.14  Aligned_cols=180  Identities=12%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      .-....|...+++.+.-..+.|.|+.  +.+....+.+.  ....+-.+..  +.+..+.+.       +.|.+||+.++
T Consensus        70 ~g~~~vw~~~n~yAv~~~~~~I~I~k--n~~~~~~k~i~--~~~~~~~If~--G~LL~~~~~-------~~i~~yDw~~~  136 (443)
T PF04053_consen   70 SGLSFVWSSRNRYAVLESSSTIKIYK--NFKNEVVKSIK--LPFSVEKIFG--GNLLGVKSS-------DFICFYDWETG  136 (443)
T ss_dssp             E-SEEEE-TSSEEEEE-TTS-EEEEE--TTEE-TT-------SS-EEEEE---SSSEEEEET-------TEEEEE-TTT-
T ss_pred             ceeEEEEecCccEEEEECCCeEEEEE--cCccccceEEc--CCcccceEEc--CcEEEEECC-------CCEEEEEhhHc
Confidence            34556788866544433366688863  22222111221  1112333333  333333332       56999999999


Q ss_pred             cEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCC-----------eEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          167 RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADL-----------KLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +.++++.... |..+.|++++.+++  .+..+++++....           .....+......|.+.+|.-+   .++-+
T Consensus       137 ~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYt  212 (443)
T PF04053_consen  137 KLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYT  212 (443)
T ss_dssp             -EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE
T ss_pred             ceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEE
Confidence            9999998554 99999999999888  6888998876432           023333332457777788655   23333


Q ss_pred             ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                      +   ...++. .. +.....+..-..++.=+.+.+..+.+.....|+. |..+.+.
T Consensus       213 T---~~~lkY-l~-~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~ld  262 (443)
T PF04053_consen  213 T---SNHLKY-LV-NGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYELD  262 (443)
T ss_dssp             ----TTEEEE-EE-TTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE--
T ss_pred             c---CCeEEE-EE-cCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEEC
Confidence            2   224444 22 3333334333556777777776678888888888 8777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.70  E-value=0.026  Score=49.00  Aligned_cols=180  Identities=11%  Similarity=0.019  Sum_probs=105.2

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEE-EeeCccEEEeCCcEEEEEcCCCeEEEEEec-----cCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVK-LRRDRIIVVLEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~  229 (368)
                      +.|.-|+..+++. ..+...+.+.++. +...+.+++.+..+++++.+++..+..+..     .....+...+.++|.. 
T Consensus        47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~-  124 (307)
T COG3386          47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI-  124 (307)
T ss_pred             CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE-
Confidence            7888888765543 3444444455544 555666666888899999876665333321     1233456778888863 


Q ss_pred             EEEeec---------CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC--C---ceeE
Q 017642          230 VLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--G---TLLQ  295 (368)
Q Consensus       230 ~l~~~g---------~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~--~---~~~~  295 (368)
                      ++...+         -.-|.++..+..+...+.+..+-..-+.|+||||++.|+.+......|.-|++..  +   ....
T Consensus       125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~  204 (307)
T COG3386         125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG  204 (307)
T ss_pred             EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence            322212         0113233333234555555555556688999999997777766543277777652  1   1111


Q ss_pred             eeEeccCcccEEEEEEecCCCEEEEEeCCC-eEEEEEccCCCCC
Q 017642          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGS  338 (368)
Q Consensus       296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~  338 (368)
                      .+......+..-.++...+|.+.+++..+| .|.+|+.+ ++..
T Consensus       205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~  247 (307)
T COG3386         205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL  247 (307)
T ss_pred             EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence            111111345666788888888876555554 79999887 5443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=3.2e-05  Score=72.86  Aligned_cols=160  Identities=8%  Similarity=0.035  Sum_probs=112.1

Q ss_pred             EEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          169 IGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       169 ~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      .+.+. +....+|++|+.+.+.++   ..|.|++|++.+|........|..+++.+.-+.+|..++..+ ....-...+|
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltss-s~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSS-SSSSPLSALW 1172 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeec-cccCchHHHh
Confidence            34455 778899999999888777   589999999999999999999999999999999998755443 2223344557


Q ss_pred             ecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--CcccEEEEEEecCCCEEEE
Q 017642          245 HYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       245 ~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s  320 (368)
                      +...  .....+.    .-.++.|+.....-+.|+.... ..|||+.++..+.++-.+.  ....-+...|+|+..+++ 
T Consensus      1173 ~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~-a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADD-ALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ccccccCcccccc----ccceeehhhhHHHHHhcccccc-eEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            7654  2222222    3467888876544444444445 8999999998877743221  111236788999988776 


Q ss_pred             EeCCCeEEEEEccCCCCCC
Q 017642          321 SSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       321 ~s~dg~i~iwd~~~~~~~~  339 (368)
                        .||  .+||++..+.+.
T Consensus      1247 --ndG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIH 1261 (1516)
T ss_pred             --eCc--eeeeeccHHHHh
Confidence              466  479998875543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00024  Score=64.70  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=74.5

Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceE-EEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~-~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                      .+..+.|+|.-+  ++|. +..+|.+.+...+.+.+.++.-|...++ +++|.|||+.||.|-.||+ |++.|+.++..+
T Consensus        22 ~i~~~ewnP~~d--LiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMD--LIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccc--hhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence            455678888776  3444 6679999997777888888887777777 9999999999999999999 999999999888


Q ss_pred             EeeEeccCcccEEEEEEec
Q 017642          295 QEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       295 ~~~~~~~~~~~v~~l~~sp  313 (368)
                      ..+... ....|.++.|.+
T Consensus        98 ~~~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFS-VETDISKGIWDR  115 (665)
T ss_pred             eccccc-cccchheeeccc
Confidence            774322 345788888863

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.64  E-value=0.027  Score=47.04  Aligned_cols=179  Identities=11%  Similarity=0.075  Sum_probs=107.6

Q ss_pred             EEEEEEcCCCCEEEEEe-CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...+.|..+|.++-+.+ .+.  |+.+|+++++......+  ....-.-.+....+.++..+--.      +...+||..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd~~  118 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITILGDKLYQLTWKE------GTGFVYDPN  118 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESSS------SEEEEEETT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEEECCEEEEEEecC------CeEEEEccc
Confidence            44577877787776665 443  99999998887766666  34455556666688888888655      899999999


Q ss_pred             CCcEEEEEecCCceeEEEEeeCccEEE-eCC--cEEEEEcCCCeEEEEEeccCC-----CeeEEEEecCCCeEEEEeecC
Q 017642          165 QSRCIGELSFRSEVRSVKLRRDRIIVV-LEQ--KIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~--~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +-+.+.++...+.=+.++  .|+..++ +||  .|+.+|.++.+..+.+....+     .++-+.+. +|.  +.|-.=.
T Consensus       119 tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~--IyANVW~  193 (264)
T PF05096_consen  119 TLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK--IYANVWQ  193 (264)
T ss_dssp             TTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE--EEEEETT
T ss_pred             cceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE--EEEEeCC
Confidence            999999999777778887  4444444 665  688888888777766643221     23345554 332  2222122


Q ss_pred             CCCeEEEEecCcceeeeee---------------ccCcceEEEEECCCCCEEEEEeCC
Q 017642          237 QKGQVRVEHYASKRTKFIM---------------AHDSRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~---------------~~~~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      .|..++|+..++.....+.               ....-.+.|+++|....|...+..
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            3555555666655444321               013457899999877755555543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00042  Score=63.94  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=85.3

Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                      .+.--++...+++  ++. |+.-|.++++...++....++.  ..+.+..+..+++..++|.|+..|. |.++-+..+.+
T Consensus        35 ~v~lTc~dst~~~--l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p  110 (726)
T KOG3621|consen   35 RVKLTCVDATEEY--LAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELP  110 (726)
T ss_pred             eEEEEEeecCCce--EEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCC
Confidence            4455566667775  443 6678999998888776665544  4556667788888888999999998 99998776432


Q ss_pred             e---EeeEe-ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          294 L---QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       294 ~---~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      .   +.-.. ..|...|++++|++|+..|++|...|+|..-.++.
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1   11111 12567899999999999999999999999998887

>smart00320 WD40 WD40 repeats

Probab=97.62  E-value=0.00019  Score=40.16  Aligned_cols=37  Identities=27%  Similarity=0.564  Sum_probs=32.5

Q ss_pred             eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       250 ~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                      ....+..|...|.++.|++++.++++++.|+. +++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            34556678889999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.62  E-value=0.03  Score=46.88  Aligned_cols=190  Identities=13%  Similarity=0.079  Sum_probs=98.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ...+..++|+|+...|++-.|..  |..++.+ ++......+  ......-.+.+..++.++++..++     +.+.+++
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l--~g~~D~EgI~y~g~~~~vl~~Er~-----~~L~~~~   92 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL--DGFGDYEGITYLGNGRYVLSEERD-----QRLYIFT   92 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE---SS-SSEEEEEE-STTEEEEEETTT-----TEEEEEE
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC--CCCCCceeEEEECCCEEEEEEcCC-----CcEEEEE
Confidence            34599999999877665555333  5555532 333333334  334445567777888888877766     8999998


Q ss_pred             CCCCc------EEEEEe------cCCceeEEEEeeCcc-EEE--eCCcEEEEEcCC---CeEEEEE--e------ccCCC
Q 017642          163 DHQSR------CIGELS------FRSEVRSVKLRRDRI-IVV--LEQKIFVYNFAD---LKLLHQI--E------TIANP  216 (368)
Q Consensus       163 ~~~~~------~~~~~~------~~~~v~~~~~~~~~~-~l~--~d~~i~vwd~~~---~~~~~~~--~------~~~~~  216 (368)
                      +....      ....+.      ++..+-.++|++.+. +++  ...-..+|.+..   ...+...  .      .....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            73321      112222      345689999999644 333  444455555532   1111111  1      12234


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccC---------cceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      +..+.++|....+++.+  ..+..+...+.+++.+..+.-..         .....|+|.++|++.+ .++-+. .++|
T Consensus       173 ~S~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-fy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-FYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-EEEE
T ss_pred             ccceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-EEEe
Confidence            56789999988877764  35667766777777665543211         2467899999997544 445544 4444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.60  E-value=0.026  Score=45.67  Aligned_cols=132  Identities=14%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             CCceeEEEEeeCccEEE---e---------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          175 RSEVRSVKLRRDRIIVV---L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~---~---------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                      ......-..+|+|++.+   .         .|.++.|-.. + .+..+...-.--+.++|+.+.+.++++  -+.+-.|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~i--Dsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYI--DSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEE--ccCceEEe
Confidence            44566777889999977   1         3455555532 2 222222223334568888887776654  45566676


Q ss_pred             EEecCc--------ceeeeeec----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          243 VEHYAS--------KRTKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       243 i~~~~~--------~~~~~~~~----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      -|+.+.        +.+..++.    ..-..-.+++..+|++.++.-..++ |..+|..+|+.+.+++.  ....|++++
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl--Pt~qitscc  260 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL--PTPQITSCC  260 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc--CCCceEEEE
Confidence            666432        11222221    1112234566778888777777788 99999999999999987  356899999


Q ss_pred             Eec
Q 017642          311 FSS  313 (368)
Q Consensus       311 ~sp  313 (368)
                      |--
T Consensus       261 FgG  263 (310)
T KOG4499|consen  261 FGG  263 (310)
T ss_pred             ecC
Confidence            963

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.60  E-value=0.051  Score=49.03  Aligned_cols=235  Identities=14%  Similarity=0.131  Sum_probs=115.6

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .|+++.|.++..-|++|. .+.|.||.+...+..-.+.     ......+.+.+    +-..+       +.-.+-|+..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~-----~~~~~~~~~~~----~~~~~-------~~~~l~di~~   66 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE-----QPPDLDYNFRR----FSLNN-------SPGKLTDISD   66 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------GGG-------SS-SEEE-GG
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC-----CCcccCccccc----ccccC-------CCcceEEehh
Confidence            589999999988888888 6668888775433221000     00111111100    00000       1122223221


Q ss_pred             --------C-cEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEecc--------CCCeeEEEEe--
Q 017642          166 --------S-RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVS--  223 (368)
Q Consensus       166 --------~-~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~--  223 (368)
                              | .+...+. ..+.|++++.+.-|...+  .+|.+.|.|+|....+..-...        ...++++.|.  
T Consensus        67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm  146 (395)
T PF08596_consen   67 RAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM  146 (395)
T ss_dssp             G--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred             hCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence                    1 2233333 578999999987777666  5899999999888776653211        2235556554  


Q ss_pred             ---cCCCe-EEEEeecCCCCeEEEEecC----cce----eeeeeccCcceEEEE-ECCC-----------------C---
Q 017642          224 ---QGVGS-LVLVCPGLQKGQVRVEHYA----SKR----TKFIMAHDSRIACFA-LTQD-----------------G---  270 (368)
Q Consensus       224 ---~~~~~-~~l~~~g~~dg~i~i~~~~----~~~----~~~~~~~~~~i~~v~-~sp~-----------------g---  270 (368)
                         .|+.. +.+.+ |...|.+.++...    +.-    ......+.++|..|. |+.+                 |   
T Consensus       147 ~~~~D~ySSi~L~v-GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i  225 (395)
T PF08596_consen  147 TLGGDGYSSICLLV-GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI  225 (395)
T ss_dssp             E-TTSSSEEEEEEE-EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred             ecCCCcccceEEEE-EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence               23322 34444 7788998885332    111    111124555655554 3211                 1   


Q ss_pred             -CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe-----cCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          271 -QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-----SNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       271 -~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                       .+++++++. . +||+...+.+..+....  .......+.+-     ..+..|++-..+|.|++|.+-.-+++.+..
T Consensus       226 ~g~vVvvSe~-~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  226 PGYVVVVSES-D-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             -EEEEEE-SS-E-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             CcEEEEEccc-c-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence             155555544 4 99999988877665553  22334445552     356678888899999999998877765443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.011  Score=55.07  Aligned_cols=119  Identities=9%  Similarity=0.080  Sum_probs=78.6

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ......|+..|.--++...+++++.|.+. .+.+|+-..+.... .... +....+.....+++..+++.++..     |
T Consensus        26 ~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~-~~~~~~~~~~vs~~e~lvAagt~~-----g   98 (726)
T KOG3621|consen   26 LLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE-GATGITCVRSVSSVEYLVAAGTAS-----G   98 (726)
T ss_pred             hhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cccc-CccceEEEEEecchhHhhhhhcCC-----c
Confidence            34445677778777888899999999954 49999865544332 2221 233334444555555555555554     8


Q ss_pred             cEEEEeCCCCcE-----EEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCC
Q 017642          157 KVMIWDDHQSRC-----IGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD  203 (368)
Q Consensus       157 ~i~vwd~~~~~~-----~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~  203 (368)
                      .|.++-++.+.+     +....  |...|++++|++|+..+.   ..|+|.+-.+..
T Consensus        99 ~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   99 RVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            899888765422     11122  678999999999999888   357888777765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.53  E-value=0.075  Score=50.13  Aligned_cols=235  Identities=10%  Similarity=0.071  Sum_probs=124.5

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCc--eeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-  173 (368)
                      .++.++ ++.+.-.|.++++......+. ...  ..+. .-....+.+++.+.+.+.. .+|.|.-+|.++|+.+-.+. 
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~~g~Vivg~~~~~~~-~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVVKGKVITGISGGEFG-VRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEECCEEEEeecccccC-CCcEEEEEECCCCceeEeccC
Confidence            344444 777888888777776554432 111  0111 1111233333332221100 12789999999998887654 


Q ss_pred             -cCC------------------------------cee-EEEEeeCccEEE--e------CC-----------cEEEEEcC
Q 017642          174 -FRS------------------------------EVR-SVKLRRDRIIVV--L------EQ-----------KIFVYNFA  202 (368)
Q Consensus       174 -~~~------------------------------~v~-~~~~~~~~~~l~--~------d~-----------~i~vwd~~  202 (368)
                       ...                              .++ .+.+.++..++.  .      ++           .|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence             111                              111 234555433333  1      11           67788999


Q ss_pred             CCeEEEEEeccCCCe---------eEEEEecCCCeEEEEeecCCCCeEEE-EecCcceeee--------e----eccC-c
Q 017642          203 DLKLLHQIETIANPK---------GLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKF--------I----MAHD-S  259 (368)
Q Consensus       203 ~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~--------~----~~~~-~  259 (368)
                      +|+....++.....+         ..+.+..+|+..-++..+..+|.+.+ +..+++.+..        .    .... .
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~  359 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR  359 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence            999988776533222         12333346653223333678999998 5445554311        1    0000 0


Q ss_pred             ce----------------------------EEEEECCCCCEEEEEeCC--------------------------------
Q 017642          260 RI----------------------------ACFALTQDGQLLATSSTK--------------------------------  279 (368)
Q Consensus       260 ~i----------------------------~~v~~sp~g~~l~s~~~d--------------------------------  279 (368)
                      ++                            ..++++|+..+++....+                                
T Consensus       360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~  439 (527)
T TIGR03075       360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH  439 (527)
T ss_pred             CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence            00                            125566665544433222                                


Q ss_pred             -CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          280 -GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       280 -g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                       |. |.-+|+.+++.+-.....   .+...-...-.+.+++.++.||.++.+|.++++..=
T Consensus       440 ~g~-l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       440 MGS-LIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             cee-EEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence             34 777888888877666532   111111122245577778889999999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.53  E-value=0.043  Score=51.42  Aligned_cols=191  Identities=13%  Similarity=0.202  Sum_probs=101.0

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCcceEEEcccC---CceeEE--EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE
Q 017642           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (368)
Q Consensus        96 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~  170 (368)
                      +++.++...++.+.-+|..+++..........   ....+.  .+....++.+++... +     +.|.-+|.++|+.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~-----g~v~AlD~~TG~~~W  134 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-D-----GRLVALDAETGKQVW  134 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-C-----CeEEEEECCCCCEee
Confidence            34434433377788888877777655444211   000000  112222134444333 3     899999999999988


Q ss_pred             EEecCCc------ee-EEEEeeCccEEE-e----------CCcEEEEEcCCCeEEEEEeccCCC----------------
Q 017642          171 ELSFRSE------VR-SVKLRRDRIIVV-L----------EQKIFVYNFADLKLLHQIETIANP----------------  216 (368)
Q Consensus       171 ~~~~~~~------v~-~~~~~~~~~~l~-~----------d~~i~vwd~~~~~~~~~~~~~~~~----------------  216 (368)
                      .+.....      +. ...+. ++.+++ .          ++.++.+|..+|+.+..+......                
T Consensus       135 ~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  213 (488)
T cd00216         135 KFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP  213 (488)
T ss_pred             eecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence            8773332      11 11222 344444 1          467899999999988877542110                


Q ss_pred             ----e-eEEEEecCCCeEEEEeecCCCC------------------eEEE-EecCcceeeeeec--cCc--------c-e
Q 017642          217 ----K-GLCAVSQGVGSLVLVCPGLQKG------------------QVRV-EHYASKRTKFIMA--HDS--------R-I  261 (368)
Q Consensus       217 ----v-~~~~~~~~~~~~~l~~~g~~dg------------------~i~i-~~~~~~~~~~~~~--~~~--------~-i  261 (368)
                          + ...++.+.+..+++.   +.++                  .+.- +..+++.+-.+..  |..        + +
T Consensus       214 ~g~~vw~~pa~d~~~g~V~vg---~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~  290 (488)
T cd00216         214 GGGTSWASPTYDPKTNLVYVG---TGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSL  290 (488)
T ss_pred             CCCCccCCeeEeCCCCEEEEE---CCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeE
Confidence                0 012333334443332   2232                  3433 5555555544331  110        0 1


Q ss_pred             EEEEECCCCC---EEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          262 ACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       262 ~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      ..+. .-+|.   +++.++.+|. +...|.++|+.+....
T Consensus       291 ~~~~-~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~  328 (488)
T cd00216         291 ADIK-PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP  328 (488)
T ss_pred             Eecc-ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence            1111 11343   6778888999 9999999999887765

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.00031  Score=66.14  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=86.4

Q ss_pred             eEEEEecCCCeEEEEee-cCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          218 GLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~-g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      +...|+|....+.+++- -...|.|.|+..++.+.....- .-.+++++|+|..-.|+.|-+-|. +.+|...+.+. ++
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccc-ceehhhhccChHHHHHhhccccce-eEEEecCCcee-ee
Confidence            34678887776555532 2346788887777764433321 112567999999888999999998 99998655443 34


Q ss_pred             eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       297 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +... |..+|..+.||++|..|+++..-|.|.+|.+....+..
T Consensus        96 v~~t-h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q  137 (1416)
T KOG3617|consen   96 VVET-HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ  137 (1416)
T ss_pred             eccC-CCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence            4432 88999999999999999999999999999998655543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.01  Score=56.06  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=83.9

Q ss_pred             cccCCCCCEEEEEEcCC-------------CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-----
Q 017642           80 TSSSPPPTLLHISFNQD-------------HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-----  140 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~-------------g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  140 (368)
                      ....|.+.|.-..+.-+             |+++++|+ |+.|.|-.+.+.+......|  .  ..+.+++++|+     
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~--rpiksial~Pd~~~~~  128 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF--K--RPIKSIALHPDFSRQQ  128 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec--C--CcceeEEeccchhhhh
Confidence            34567777766666544             99999999 77799998888777765555  2  34455556655     


Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCC---CCcEEEEEe-cCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccCC
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDH---QSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIAN  215 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~~  215 (368)
                      ...+++|+.-     | +.++.-+   ....+ .+. ..+.|.++.|..+-...+.|-.|++||+.+++.+..++....
T Consensus       129 sk~fv~GG~a-----g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~  200 (846)
T KOG2066|consen  129 SKQFVSGGMA-----G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQ  200 (846)
T ss_pred             hhheeecCcc-----e-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCC
Confidence            3456666653     5 7776532   11222 233 788999999975543334788999999999888877754443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.52  E-value=0.066  Score=48.30  Aligned_cols=80  Identities=15%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE-ecC----------------CCE-EE
Q 017642          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF-SSN----------------AQW-LA  319 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~-sp~----------------~~~-l~  319 (368)
                      ...+.+|..+|++++.|+...-|+ |.++|+.++..++.+++.. +..+.=+.. ...                ..+ ++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            345788999999998888877788 9999999998888877632 111111111 111                112 33


Q ss_pred             EEeCCCeEEEEEccCCCCCC
Q 017642          320 VSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       320 s~s~dg~i~iwd~~~~~~~~  339 (368)
                      -+-.-|.|.||+++++.+..
T Consensus       385 yaprRg~lEvW~~~~g~Rv~  404 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVA  404 (415)
T ss_pred             EeccCCeEEEEecCCCCEEE
Confidence            45578899999999987753

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0025  Score=57.21  Aligned_cols=137  Identities=20%  Similarity=0.300  Sum_probs=93.8

Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc---------EEE-eCCcEEEEEcCCC-e-EEE
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI---------IVV-LEQKIFVYNFADL-K-LLH  208 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~-~d~~i~vwd~~~~-~-~~~  208 (368)
                      .+.+.++...     ..|+-.|++.|+.+.++.....|.-+.+.|+.+         ++. .|..|.-||.+-. + .+.
T Consensus       346 nlil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  346 NLILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             ceEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            4445555554     789999999999999999666688888888642         222 6889999998632 2 222


Q ss_pred             EEeccC----CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEE
Q 017642          209 QIETIA----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (368)
Q Consensus       209 ~~~~~~----~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i  283 (368)
                      ..+.+.    ....|.+-..+|   ++++ |+.+|.|++++..+...+ .+.+-..+|..|..+.+|++|+..+. .. +
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG---~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-L  494 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG---YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-L  494 (644)
T ss_pred             eeeccccccccccceeeecCCc---eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-E
Confidence            222222    233445555555   3554 789999999887665444 36788889999999999998765554 34 6


Q ss_pred             EEEEC
Q 017642          284 RIFNT  288 (368)
Q Consensus       284 ~iwd~  288 (368)
                      .+-++
T Consensus       495 lLi~t  499 (644)
T KOG2395|consen  495 LLIDT  499 (644)
T ss_pred             EEEEE
Confidence            66665

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.42  E-value=0.051  Score=44.75  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=23.3

Q ss_pred             EcCCCCEEEEEe-CCeEEEEEecCCCcceEEEc
Q 017642           93 FNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF  124 (368)
Q Consensus        93 ~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~  124 (368)
                      ..+++.++..|+ |+..+..|..+...++....
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            346788888888 77788888877776655443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.00099  Score=64.55  Aligned_cols=99  Identities=18%  Similarity=0.275  Sum_probs=68.2

Q ss_pred             cCCCCeEEEEecCccee--eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc-ccEEEEEE
Q 017642          235 GLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF  311 (368)
Q Consensus       235 g~~dg~i~i~~~~~~~~--~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~  311 (368)
                      |+..|.+...+.++...  ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..|..+.+
T Consensus       105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~  183 (1206)
T KOG2079|consen  105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIFVGR  183 (1206)
T ss_pred             EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEEEEE
Confidence            55677777744444322  222234578999999999999999999999 999999999988887763221 13334444


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          312 SSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..++..++++...|.  +|.+.-.+
T Consensus       184 t~~nS~llt~D~~Gs--f~~lv~nk  206 (1206)
T KOG2079|consen  184 TSQNSKLLTSDTGGS--FWKLVFNK  206 (1206)
T ss_pred             eCCCcEEEEccCCCc--eEEEEech
Confidence            556667777777775  66665443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.39  E-value=0.021  Score=40.65  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642          142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGL  219 (368)
Q Consensus       142 ~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~  219 (368)
                      .-|+.++.|     ..|++|+  ..+.+.++...+.|..+.-...+++..  .+|+|-+|+-  .+.+..++....++..
T Consensus        16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM   86 (111)
T ss_pred             ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence            445555666     9999998  447888888889999999888877666  6899999984  3445555544444333


Q ss_pred             EEEecCCCeE-EEEeecCCCCeEE
Q 017642          220 CAVSQGVGSL-VLVCPGLQKGQVR  242 (368)
Q Consensus       220 ~~~~~~~~~~-~l~~~g~~dg~i~  242 (368)
                      ..+..+++.. -|+ .|-.+|.|-
T Consensus        87 ~~~D~~gdG~~eLI-~GwsnGkve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELI-VGWSNGKVE  109 (111)
T ss_pred             EEEcCCCCCceEEE-EEecCCeEE
Confidence            3444443221 223 255677764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.026  Score=50.99  Aligned_cols=133  Identities=14%  Similarity=0.294  Sum_probs=86.3

Q ss_pred             CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe----ecCCCCeEEEEecCcc---eeeeeecc----CcceE
Q 017642          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PGLQKGQVRVEHYASK---RTKFIMAH----DSRIA  262 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~----~g~~dg~i~i~~~~~~---~~~~~~~~----~~~i~  262 (368)
                      ..++-.|++.|+.+.....+.. |..+.+.|+.+.--+..    .|-.+..|.-|+...+   .+...+.|    .....
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs  434 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS  434 (644)
T ss_pred             CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence            5788889999999988876655 77777877765321110    1333444444443322   22222232    23455


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      |.+-..+| ++++|+.+|. ||+||- .+..-++ +++  -..+|..|..+.||++|++.+ +..|.+.++.
T Consensus       435 c~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  435 CFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            66655555 7999999999 999996 5544443 443  467899999999999987665 5667777764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.36  E-value=0.014  Score=55.48  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=87.1

Q ss_pred             CceeEEEEeeCccEEE--e-------CC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC--------
Q 017642          176 SEVRSVKLRRDRIIVV--L-------EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL--------  236 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~--~-------d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~--------  236 (368)
                      ..+...+++++|..++  .       |.  .|.+++. .+.. +.+.. ......-.|+|+|+.++++..+.        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            3577889999998887  2       33  4555564 2333 33322 22367789999988766554210        


Q ss_pred             -CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEE---EECCCCce-e---EeeEeccCcccEEE
Q 017642          237 -QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI---FNTLDGTL-L---QEVRRGADRAEIYS  308 (368)
Q Consensus       237 -~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~i---wd~~~~~~-~---~~~~~~~~~~~v~~  308 (368)
                       ..+.+.+...+......  ...+.|..+.|||||+.|+... +|. |.|   -....|+. +   ..+... -...+.+
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~  501 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPG-LGDTAVS  501 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecc-cCCcccc
Confidence             11222221111111111  2345799999999999888766 466 777   44445541 1   112211 2233688


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +.|..++.++ ++..++...+|.+.-....
T Consensus       502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             ceEecCCEEE-EEecCCCCceEEEecCCcc
Confidence            9999999855 5555555566766554443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.32  E-value=0.086  Score=45.26  Aligned_cols=218  Identities=16%  Similarity=0.224  Sum_probs=115.7

Q ss_pred             CCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE----
Q 017642           95 QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG----  170 (368)
Q Consensus        95 ~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~----  170 (368)
                      ..++.|+.|+++|+.++++...... ....   ....+..+...++...++.-.+      +.+.++++..-....    
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~-~~i~---~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKP-TRIL---KLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccc-eeEe---ecceEEEEEEecccCEEEEEcC------CccEEEEchhhcccccccc
Confidence            4578899999888999998322221 1221   2223667766664433333222      789999987543333    


Q ss_pred             -----------EEecCCceeEEE---EeeCccEEE--eCCcEEEEEcCCC-----eEEEEEeccCCCeeEEEEecCCCeE
Q 017642          171 -----------ELSFRSEVRSVK---LRRDRIIVV--LEQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       171 -----------~~~~~~~v~~~~---~~~~~~~l~--~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                                 .+.....+...+   -......++  ...+|.+|.....     +..+.+.. ...+..++|.  ++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i  151 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKI  151 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEE
Confidence                       222334455555   112233444  5778888887542     45556543 3566677777  4443


Q ss_pred             EEEeecCCCCeEEEEecCcceeeee--ec----------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE--
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFI--MA----------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--  295 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~--~~----------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~--  295 (368)
                      ++   |..++...++..++.....+  ..          ...++..+... ++.+|++-.  .. -.+.| ..|+..+  
T Consensus       152 ~v---~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~--~~-g~fv~-~~G~~~r~~  223 (275)
T PF00780_consen  152 CV---GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD--NI-GVFVN-KNGEPSRKS  223 (275)
T ss_pred             EE---EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec--ce-EEEEc-CCCCcCccc
Confidence            33   33455555544433222221  11          11234444443 456665432  22 23334 4555443  


Q ss_pred             eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      .+.-   ...+.++++.  ..+|++.+. +.|.||++.+++-..
T Consensus       224 ~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  224 TIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             EEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence            2332   2355666664  357777665 459999999986543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.27  E-value=0.22  Score=48.76  Aligned_cols=227  Identities=13%  Similarity=0.196  Sum_probs=133.6

Q ss_pred             CEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE-ecCCCC--------CCCCCcEEEEeCCCCcE
Q 017642           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDP--------QYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        98 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~--------~~~~~~i~vwd~~~~~~  168 (368)
                      ..|+.+..+.+++.-++..+....+++  .-......+++.+....+. .+.+-.        .+.-..++++|-++.+.
T Consensus       685 d~l~~~~~~~l~i~tid~iqkl~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  685 DSLASANGGALTIGTIDEIQKLHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             ceEEEecCCceEEEEecchhhcceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            356666667788887776666555554  2333444556655333222 221110        01113577888777766


Q ss_pred             EEEEe--cCC---ceeEEEEeeC-ccEEE-------------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCCe
Q 017642          169 IGELS--FRS---EVRSVKLRRD-RIIVV-------------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGS  228 (368)
Q Consensus       169 ~~~~~--~~~---~v~~~~~~~~-~~~l~-------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  228 (368)
                      +...+  ...   .|.++.|..| +.+++             ..|.|.+|.+..++.++.+..+.-.-...++.- +|+ 
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngk-  841 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGK-  841 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCe-
Confidence            65544  222   3444557766 44444             158899999877554444432221111223322 333 


Q ss_pred             EEEEeecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--ceeEeeEeccCccc
Q 017642          229 LVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGADRAE  305 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--~~~~~~~~~~~~~~  305 (368)
                       ++|.   -+..|+++.++.+ .++.-..|..++..+...-.|..++.|..-++ +.+...+..  ... ++....+..+
T Consensus       842 -llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~W  915 (1096)
T KOG1897|consen  842 -LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNW  915 (1096)
T ss_pred             -EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccc
Confidence             4443   4678999666665 44444567788999998889999999998887 776655443  344 4444446778


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ++++.+-.+..+ +.+..+|.+++-..++
T Consensus       916 mtaveil~~d~y-lgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  916 MTAVEILDDDTY-LGAENSGNLFTVRKDS  943 (1096)
T ss_pred             eeeEEEecCceE-EeecccccEEEEEecC
Confidence            888888755544 4556788888777654

>PRK10115 protease 2; Provisional

Probab=97.23  E-value=0.24  Score=48.49  Aligned_cols=239  Identities=11%  Similarity=0.048  Sum_probs=117.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCC-e-----EEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCCcE
Q 017642           87 TLLHISFNQDHGCFAAGTDH-G-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~-~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i  158 (368)
                      .+..+.|+|||++|+.+.|. +     |++.|+.++... ...+. ...   ..+.|.+  +.+++.....+ ......|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~-~~~---~~~~w~~D~~~~~y~~~~~~-~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD-NVE---PSFVWANDSWTFYYVRKHPV-TLLPYQV  201 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc-Ccc---eEEEEeeCCCEEEEEEecCC-CCCCCEE
Confidence            46778999999999887732 2     777887765422 12221 111   2355554  44444443211 1122679


Q ss_pred             EEEeCCCC--cEEEEEe-cCCcee-EEEEeeCccEEE------eCCcEEEEEc--CCCeEEEEEeccCCCeeEEEEecCC
Q 017642          159 MIWDDHQS--RCIGELS-FRSEVR-SVKLRRDRIIVV------LEQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       159 ~vwd~~~~--~~~~~~~-~~~~v~-~~~~~~~~~~l~------~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      +.+++.++  +....+. ...... .+..+.++.+++      .++.+.+++.  .+++....+....+...  .+...+
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  279 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY--SLDHYQ  279 (686)
T ss_pred             EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE--EEEeCC
Confidence            99999888  4444444 222233 333344777665      3578999995  23432222222222222  222334


Q ss_pred             CeEEEEeec-CCCCeEEEEecC-cceeeeeecc-C-cceEEEEECCCCCEEEEEeCCCc-EEEEEECCCCceeEeeEecc
Q 017642          227 GSLVLVCPG-LQKGQVRVEHYA-SKRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       227 ~~~~l~~~g-~~dg~i~i~~~~-~~~~~~~~~~-~-~~i~~v~~sp~g~~l~s~~~dg~-~i~iwd~~~~~~~~~~~~~~  301 (368)
                      +.+++.+.. .....|...+.. ......+..+ . ..|..+.+. .+.++++...+|. .+.++|...+ .+..+... 
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~-  356 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD-  356 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC-
Confidence            555555421 112222222222 2222344444 2 368888887 3345556666664 1444554333 33344311 


Q ss_pred             CcccEEEEEEe--cCCC-EEEEEe---CCCeEEEEEccCCC
Q 017642          302 DRAEIYSLAFS--SNAQ-WLAVSS---DKGTVHVFNLKVNS  336 (368)
Q Consensus       302 ~~~~v~~l~~s--p~~~-~l~s~s---~dg~i~iwd~~~~~  336 (368)
                      ....+..+.++  +++. ++++.+   .-+.++.+|+.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            12233334444  3443 444333   35678888887754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.22  E-value=0.15  Score=46.83  Aligned_cols=198  Identities=10%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---e-----------CCcEE
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-----------EQKIF  197 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~-----------d~~i~  197 (368)
                      +..+.+++++..++-+-....-....|+++|+.+|+.+...-.......+.|.+++..++   .           ...|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            335677777665442211000001469999999997765432222233499999987766   1           22488


Q ss_pred             EEEcCCCeE--EEEEeccCCC--eeEEEEecCCCeEEEEeecCCC-CeEEEEecCc-----ceeeeeeccCcceE-EEEE
Q 017642          198 VYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS-----KRTKFIMAHDSRIA-CFAL  266 (368)
Q Consensus       198 vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~-----~~~~~~~~~~~~i~-~v~~  266 (368)
                      .|.+.+...  ...+......  ...+..+.|++.+++.+....+ ..+.+-+...     .....+......+. .+..
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~  285 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH  285 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence            888866532  2444444433  4567889999987765544444 4566533332     23344444433343 3433


Q ss_pred             CCCCCEEEEEeC---CCcEEEEEECCCCce---eEeeEeccCcccEEEEEEecCCCEEE-EEeCCC--eEEEEEcc
Q 017642          267 TQDGQLLATSST---KGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKG--TVHVFNLK  333 (368)
Q Consensus       267 sp~g~~l~s~~~---dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg--~i~iwd~~  333 (368)
                      . .+.+++....   ++. |.-.++.+...   ...+..+.....+..+...  +.+|+ ....++  .|+++++.
T Consensus       286 ~-~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  286 H-GDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             E-TTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             c-CCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence            3 4444443332   345 66677776552   2234432112245555543  44444 444554  48889988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.02  E-value=9.5e-05  Score=67.36  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=98.5

Q ss_pred             ccccCCCCCEEEEEEcC-CCCEEEEEeC-----CeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCC
Q 017642           79 STSSSPPPTLLHISFNQ-DHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD  150 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~d-----~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d  150 (368)
                      .....|....++++|++ |..+||+|-|     ..+.|||+.+.  .......|..+.......++|..+...+.+|...
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            34556777889999987 5678888863     33999999765  1111122221122223355666666666666554


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEee-CccEEE--eCCcEEEEE-cCCCe-EEEEEec----cCCCeeEEE
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYN-FADLK-LLHQIET----IANPKGLCA  221 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~--~d~~i~vwd-~~~~~-~~~~~~~----~~~~v~~~~  221 (368)
                           ..+.++|++........-....+..+.+.| .+.+++  .||.|-+|| .++-+ .++.+..    ....+..++
T Consensus       176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a  250 (783)
T KOG1008|consen  176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA  250 (783)
T ss_pred             -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence                 789999987432211111345677788888 677777  799999999 33322 2222211    122478899


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEec
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHY  246 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~  246 (368)
                      |+|....++.++ .-..++|++++.
T Consensus       251 ycPtrtglla~l-~RdS~tIrlydi  274 (783)
T KOG1008|consen  251 YCPTRTGLLAVL-SRDSITIRLYDI  274 (783)
T ss_pred             eccCCcchhhhh-ccCcceEEEecc
Confidence            999887655554 345677777554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.16  Score=42.75  Aligned_cols=180  Identities=9%  Similarity=0.042  Sum_probs=100.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ..|.++.|+|+.+.|.+..++.-.|-.+.+ ++......+.  .-...-.+.+..++.++++..++     +.+.++.+.
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~-----~~l~~~~vd  158 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERD-----RALYLFTVD  158 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhc-----ceEEEEEEc
Confidence            349999999999988877766644444443 3333333332  22223356677888888888887     888888766


Q ss_pred             CCcEEE-------EEe---c-CCceeEEEEeeCccEEE---eCCcEEEEEcCCCe-E--EEEEecc-------CCCeeEE
Q 017642          165 QSRCIG-------ELS---F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-L--LHQIETI-------ANPKGLC  220 (368)
Q Consensus       165 ~~~~~~-------~~~---~-~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~-~--~~~~~~~-------~~~v~~~  220 (368)
                      .+..+.       .+.   + +.....++|.+....+.   .-.-+.||.+.... .  ......+       -..+..+
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            542221       111   2 55788999999655444   34445555543221 0  1111111       1234567


Q ss_pred             EEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCc---------ceEEEEECCCCCEEE
Q 017642          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS---------RIACFALTQDGQLLA  274 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~---------~i~~v~~sp~g~~l~  274 (368)
                      .|.+..+.+++.+  .+++.+.--+..+..+..+.-+.+         ....|+..++|.+.+
T Consensus       239 ~~~~~~~~LLVLS--~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI  299 (316)
T COG3204         239 EFNAITNSLLVLS--DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI  299 (316)
T ss_pred             eecCCCCcEEEEe--cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence            7777776655543  345555446666655444332211         234677777776433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.01  E-value=0.003  Score=37.48  Aligned_cols=34  Identities=15%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       303 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ...|..++|+|...+||.++.+|.|.+|++ +.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999999 4443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.91  E-value=0.18  Score=48.15  Aligned_cols=186  Identities=10%  Similarity=0.050  Sum_probs=96.7

Q ss_pred             CCEEEEEEcCCCCEEEEEe-------CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC--CC----
Q 017642           86 PTLLHISFNQDHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD--PQ----  152 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~----  152 (368)
                      ..+...+++|||+.++...       |..-.||-...+... ...+. +.  ....-.|++++..+....+.  ..    
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            3678899999999886654       333455544333322 12221 22  25556666664333222110  00    


Q ss_pred             -CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEE---EEcCCCeE-E---EEEec-cCCCeeEEE
Q 017642          153 -YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFV---YNFADLKL-L---HQIET-IANPKGLCA  221 (368)
Q Consensus       153 -~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~v---wd~~~~~~-~---~~~~~-~~~~v~~~~  221 (368)
                       -..+.+.+.++..++...  ...+.|..+.|+|||..++  .++.|++   -....|.. +   +.+.. ....+..+.
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence             011455555665554433  4456799999999999888  6888877   44344531 1   11222 222346788


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCc
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGT  281 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~  281 (368)
                      |..++. ++++. ...+..+..-..++.....+..  ...++..|+-+++  .|+....+|.
T Consensus       504 W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        504 WRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             EecCCE-EEEEe-cCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            888887 34433 2223334333333433222222  2456777776653  3444555553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.89  E-value=0.21  Score=41.90  Aligned_cols=190  Identities=12%  Similarity=0.119  Sum_probs=110.7

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCc--eeEEEEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~--~d~~i~  197 (368)
                      ..+.|......-.+.|..++.++-+.+..   ....|+.+|+.+++..........  -..++...|..+..  .++...
T Consensus        37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   37 ETYPHDPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEE--TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred             EECCCCCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence            44555666667778884554555444432   224799999999998877763333  34555555555555  699999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeeec--cC---cceEEEEECCCCC
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMA--HD---SRIACFALTQDGQ  271 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~--~~---~~i~~v~~sp~g~  271 (368)
                      +||..+.+.+.++.-. +.-..++  .|++.+++ +.|  ...+++.+. +.+....+..  ..   ..++.+.|- +|.
T Consensus       114 ~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~-SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~  186 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIM-SDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK  186 (264)
T ss_dssp             EEETTTTEEEEEEE-S-SS--EEE--ECSSCEEE-E-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred             EEccccceEEEEEecC-CcceEEE--cCCCEEEE-ECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence            9999999998888543 3334444  67776443 323  345555443 3334443332  22   235566765 676


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEec-------------cCcccEEEEEEecCCCEEEEEe
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRG-------------ADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      +.|=.=.... |...|..+|+.+..+...             ....-.+.|++.|....|...+
T Consensus       187 IyANVW~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  187 IYANVWQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            6666655566 888899999888766421             0124578999998776555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.86  E-value=0.38  Score=45.52  Aligned_cols=187  Identities=15%  Similarity=0.187  Sum_probs=100.0

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCce-eE-------EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GV-------VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~  169 (368)
                      .|.+++ ++.|.-+|..+++............. ..       ..+....+.+++.+  .|     +.|.-+|.++|+.+
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t--~d-----g~l~ALDa~TGk~~  143 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT--LD-----ARLVALDAKTGKVV  143 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc--CC-----CEEEEEECCCCCEE
Confidence            333333 56677677776666655433200000 00       11223333333333  23     88999999999998


Q ss_pred             EEEecCC-----ceeEEEEeeCccEEE-e-------CCcEEEEEcCCCeEEEEEeccCCC--------------------
Q 017642          170 GELSFRS-----EVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP--------------------  216 (368)
Q Consensus       170 ~~~~~~~-----~v~~~~~~~~~~~l~-~-------d~~i~vwd~~~~~~~~~~~~~~~~--------------------  216 (368)
                      .......     .+.+.-.--++.+++ .       +|.|+-+|.++|+.+..+......                    
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            7765211     122211112455555 1       578999999999988765432110                    


Q ss_pred             -----------e-eEEEEecCCCeEEEEeecC---------------CCCeEEEEecCcceeeeeec--cCc-------c
Q 017642          217 -----------K-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKFIMA--HDS-------R  260 (368)
Q Consensus       217 -----------v-~~~~~~~~~~~~~l~~~g~---------------~dg~i~i~~~~~~~~~~~~~--~~~-------~  260 (368)
                                 + ..+++.+..+.+++.+ |.               .+..|.|+..+++..-.++.  |..       .
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                       0 0134444444444443 32               11334445555655554443  211       1


Q ss_pred             eEEEEECCCCC---EEEEEeCCCcEEEEEECCCCcee
Q 017642          261 IACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       261 i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                      ..-+.+..+|+   .++.+..+|. +.+.|.++|+.+
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence            11122334676   7889999999 999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.80  E-value=0.0055  Score=36.36  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                      ...|.+++|+|...+||.++.+|. |.|+.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence            346899999999999999999999 999998 66543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.66  E-value=0.43  Score=42.34  Aligned_cols=240  Identities=15%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             EEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC---CCC--------------
Q 017642           91 ISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ--------------  152 (368)
Q Consensus        91 ~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---d~~--------------  152 (368)
                      ..++++.+.++... .+.++-.|+++.+......+. ..-.....+..+.+...++....   |..              
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            45678888776554 567888888887766555553 33333334443444443333211   100              


Q ss_pred             CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc-EEE--e-------CCcEEEEEcCCCeEEEEEecc--CCCeeEE
Q 017642          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVV--L-------EQKIFVYNFADLKLLHQIETI--ANPKGLC  220 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~--~-------d~~i~vwd~~~~~~~~~~~~~--~~~v~~~  220 (368)
                      -....|.-.|+.+|+....+.....+..+.|+|..- +++  -       |..|.+.+. .+...+.+..+  ...+..=
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccc
Confidence            123467778999998877777888899999999543 333  1       334444443 34333333222  2234445


Q ss_pred             EEecCCCeEEEEe--ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC----------------cE
Q 017642          221 AVSQGVGSLVLVC--PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG----------------TL  282 (368)
Q Consensus       221 ~~~~~~~~~~l~~--~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg----------------~~  282 (368)
                      -|.+||..+....  .|..+..|.-.+........+... .....+-.++||++++-=+.|.                . 
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~-  321 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW-  321 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------E-
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE-
Confidence            6899998765532  122222333333333222222211 2344555678998776433331                3 


Q ss_pred             EEEEECCCCceeEeeEecc--------Cc-ccEEEEEEecCCCEEEEE-eCCCeEEEEEccCC
Q 017642          283 VRIFNTLDGTLLQEVRRGA--------DR-AEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVN  335 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~--------~~-~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~  335 (368)
                      |+++++..++.. .+..+.        +. ..=-...|+|||++++-. ...|...||-++-+
T Consensus       322 i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  322 IYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             EEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred             EEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence            667888766543 222210        00 012467899999987655 46787777766544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.61  E-value=0.2  Score=42.04  Aligned_cols=156  Identities=11%  Similarity=0.066  Sum_probs=99.2

Q ss_pred             CCCcEEEEEecCCceeEEEEeeCccEEE----e-CCcEEEEEcCCCeEEEEEeccCCC--eeEEEEecCCCeEEEEeecC
Q 017642          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQIETIANP--KGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~-d~~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +.|+++...........|+++|.....+    . .....++|....+...++....+.  ...=.|++||..++ ++-+.
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd  134 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND  134 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence            5677777777777778889988644333    2 446789999888777666443332  23347999998654 33222


Q ss_pred             C---CCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCC------------------CcEEEEEECCCCce
Q 017642          237 Q---KGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTK------------------GTLVRIFNTLDGTL  293 (368)
Q Consensus       237 ~---dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d------------------g~~i~iwd~~~~~~  293 (368)
                      .   -|.|-|++.+.  ..+-.+..|.-....+.|.+||+.|+.+...                  -+ +.+.|..+|+.
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l  213 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL  213 (366)
T ss_pred             CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence            2   36777777664  3445577787778889999999988876531                  11 33445455555


Q ss_pred             eEeeEec--cCcccEEEEEEecCCCEEEEE
Q 017642          294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       294 ~~~~~~~--~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      +.+....  .+.-.|..++..+||..++.+
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            4332211  234467888888888776654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.56  E-value=0.16  Score=36.24  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=61.5

Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      |.-+|..-+++  |+.|..|+++... ..+..+.. ...|+++.-... ..++.+-.+|+ |-+|+-  .+.+..++.  
T Consensus        10 ~d~dg~~eLlv--Gs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~--~~RlWRiKS--   79 (111)
T PF14783_consen   10 FDGDGENELLV--GSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGG-GRFAYALANGT-VGVYDR--SQRLWRIKS--   79 (111)
T ss_pred             cCCCCcceEEE--ecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCC-CEEEEEecCCE-EEEEeC--cceeeeecc--
Confidence            34455554443  7899999997655 33444443 345777766655 56899999999 999974  344445553  


Q ss_pred             CcccEEEEEEec---CC-CEEEEEeCCCeEE
Q 017642          302 DRAEIYSLAFSS---NA-QWLAVSSDKGTVH  328 (368)
Q Consensus       302 ~~~~v~~l~~sp---~~-~~l~s~s~dg~i~  328 (368)
                       +..+.++.+..   || .-|++|-.+|.|-
T Consensus        80 -K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 -KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             23466666543   33 2688888888774

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.45  E-value=0.14  Score=46.34  Aligned_cols=80  Identities=15%  Similarity=0.278  Sum_probs=55.7

Q ss_pred             eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc------CcccEEEEEEec-----CC---CE
Q 017642          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA------DRAEIYSLAFSS-----NA---QW  317 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~sp-----~~---~~  317 (368)
                      ..+....++|++++.|.-| ++|.|.++|. +.|.|++....++.-....      ....|+++.|+-     |+   -.
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            3455568899999997444 9999999999 9999998887776633221      234688888862     33   36


Q ss_pred             EEEEeCCCeEEEEEcc
Q 017642          318 LAVSSDKGTVHVFNLK  333 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~  333 (368)
                      |++|+..|.+.+|.+.
T Consensus       158 L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEe
Confidence            8889999999999985

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.015  Score=46.84  Aligned_cols=101  Identities=16%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             cCCCCeEEEEecCc--ceeeeeeccCcceEEE-EECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc-ccEEEEE
Q 017642          235 GLQKGQVRVEHYAS--KRTKFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLA  310 (368)
Q Consensus       235 g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v-~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~  310 (368)
                      |..+|.|++|....  .....+..-...|.++ .--.++.+..+++.||. |+.|++.-++.+-..-.  |. .++..+.
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~i  152 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEELI  152 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCcceeE
Confidence            77899999965552  2222222222233332 22235568889999999 99999988877744433  44 5666666


Q ss_pred             EecCCCEEEEE--eCCCeEEEEEccCCCCC
Q 017642          311 FSSNAQWLAVS--SDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       311 ~sp~~~~l~s~--s~dg~i~iwd~~~~~~~  338 (368)
                      .+..++.++.+  |.|..++.|++..-...
T Consensus       153 vv~sd~~i~~a~~S~d~~~k~W~ve~~~d~  182 (238)
T KOG2444|consen  153 VVGSDEFLKIADTSHDRVLKKWNVEKIKDE  182 (238)
T ss_pred             EecCCceEEeeccccchhhhhcchhhhhcc
Confidence            77777888887  88889999998765543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.15  Score=40.64  Aligned_cols=103  Identities=9%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             CCCEEEEEe-CC--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE
Q 017642           96 DHGCFAAGT-DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (368)
Q Consensus        96 ~g~~l~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~  172 (368)
                      +|.++.+.+ .+  .|++||+.+++......+. ......-.+.-..+..+..+-.+      |.-..+|..+-+++..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRF  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccc
Confidence            455555554 33  3999999998888777763 22222223334456666666544      88899999999999988


Q ss_pred             ecCCceeEEEEeeCccEEEeCCc--EEEEEcCCCeE
Q 017642          173 SFRSEVRSVKLRRDRIIVVLEQK--IFVYNFADLKL  206 (368)
Q Consensus       173 ~~~~~v~~~~~~~~~~~l~~d~~--i~vwd~~~~~~  206 (368)
                      ...+.-+.++..... ++..||+  ++.-|.++...
T Consensus       128 ~y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~  162 (262)
T COG3823         128 SYEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAE  162 (262)
T ss_pred             ccCCcceeeecCCcc-eEeeCCceEEEecCHHHhhh
Confidence            877777777654433 3335654  45455554433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.31  E-value=0.4  Score=40.60  Aligned_cols=120  Identities=20%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE-CCCCcee
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLL  294 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd-~~~~~~~  294 (368)
                      .+...+++++++.+.++..+.....+++..........+.+  ..+....|++++...+....+.. .+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence            56778999999875554422233445555444433333332  36788899999887777666666 66663 3333322


Q ss_pred             -EeeEeccCcccEEEEEEecCCCEEEEEe---CCCeEEEEEccCCCCC
Q 017642          295 -QEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGS  338 (368)
Q Consensus       295 -~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~dg~i~iwd~~~~~~~  338 (368)
                       ..+......+.|..+.+||||..++...   .++.|.|=-+......
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g  149 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG  149 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence             1222211112799999999999877654   4578888877654443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=96.23  E-value=1.4  Score=43.33  Aligned_cols=200  Identities=7%  Similarity=-0.037  Sum_probs=100.9

Q ss_pred             eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---e--C----CcEEEEE
Q 017642          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L--E----QKIFVYN  200 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~--d----~~i~vwd  200 (368)
                      ..+..+.+++++..++-+.+........|++.|+.+|+.+...-.... ..++|.+|+..++   .  +    ..|+.++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            445567778877665544322111224789999988864322211111 4589999887665   2  2    3688889


Q ss_pred             cCCC--eEEEEEeccCCCeeE-EEEecCCCeEEEEeecCCCCeEEEEec---CcceeeeeeccC-cceEEEEECCCCCEE
Q 017642          201 FADL--KLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHY---ASKRTKFIMAHD-SRIACFALTQDGQLL  273 (368)
Q Consensus       201 ~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~g~~dg~i~i~~~---~~~~~~~~~~~~-~~i~~v~~sp~g~~l  273 (368)
                      +.++  +....+......... ...+.+++.+++.+....++.+.+++.   .... ..+..+. .....+. +..+.++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-eCCCEEE
Confidence            8877  333444433333332 233447877766655555667777552   2221 2222222 2222222 3233333


Q ss_pred             EEEeCCC-c-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          274 ATSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       274 ~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +....++ . .|...++........+........|..+.+. .+.++++...+|.-+++-+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3332222 2 1433444421222333332123468888887 33455666677775555544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.21  E-value=0.23  Score=45.14  Aligned_cols=144  Identities=10%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             eCccEEEeC----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC-------eEEEEeecCCCCeEEEEecC-cceee
Q 017642          185 RDRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-------SLVLVCPGLQKGQVRVEHYA-SKRTK  252 (368)
Q Consensus       185 ~~~~~l~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~l~~~g~~dg~i~i~~~~-~~~~~  252 (368)
                      .+..++..|    ..++-.|++.|+.+.....+...  .+.+.|..+       ..++.  -+..+..+|+.+- +..+.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvG--lS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVG--LSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEe--ecccceEEecccccCCcee
Confidence            344555533    46888889999999888776654  466776542       11222  2456667774433 33332


Q ss_pred             eeeccCcceEEEEECC----CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642          253 FIMAHDSRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (368)
Q Consensus       253 ~~~~~~~~i~~v~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  328 (368)
                      ... .....+.-.|+.    ...|+|.++..|. |++||.-.-.....+++  -...|..+..+.+|+++++.+. ..|.
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yll  627 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYLL  627 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceEE
Confidence            221 122222222332    3348999999999 99999543332333443  4568999999999999887664 4688


Q ss_pred             EEEccCCCC
Q 017642          329 VFNLKVNSG  337 (368)
Q Consensus       329 iwd~~~~~~  337 (368)
                      +-|+.-...
T Consensus       628 L~d~~ik~g  636 (776)
T COG5167         628 LTDVPIKYG  636 (776)
T ss_pred             EEecccccC
Confidence            888764433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.21  E-value=0.68  Score=45.26  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=52.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      .|..|.+|++|++||..+..+|.|-.+-..-.. ...++ ++...+.|-.+.-+..++.                     
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~-~~~~~-~g~~~i~Crt~~v~~~~~~---------------------  142 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGK-NGEFE-DGKKEINCRTVPVDERFFT---------------------  142 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCc-ccccc-CCCcceeEEEEEechhhcc---------------------
Confidence            799999999999999999888888776421000 01122 2233333222211111111                     


Q ss_pred             cEEEEEecCCceeEEEEeeCc---cEE-E--eCCcEEEEEcCCC
Q 017642          167 RCIGELSFRSEVRSVKLRRDR---IIV-V--LEQKIFVYNFADL  204 (368)
Q Consensus       167 ~~~~~~~~~~~v~~~~~~~~~---~~l-~--~d~~i~vwd~~~~  204 (368)
                           -.....|..+.|+|.+   ..+ +  .|+++++||+...
T Consensus       143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence                 1133457788898853   333 3  7999999999654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.35  Score=47.89  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             CCCCEEEEEeCCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 017642           95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (368)
Q Consensus        95 ~~g~~l~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  173 (368)
                      -.+..++.|++++ +-..|+...-....+.  ......|.+++|+.++..++.|-.+     |.|.+||+..++..+.+.
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n--e~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQN--ERVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccchhhcC--CccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcceeeee
Confidence            3466788888666 7777765432211122  1456789999999999999988776     999999999999988887


Q ss_pred             -cCCceeEE---EEeeCccEEE-eCCcEEEEEc
Q 017642          174 -FRSEVRSV---KLRRDRIIVV-LEQKIFVYNF  201 (368)
Q Consensus       174 -~~~~v~~~---~~~~~~~~l~-~d~~i~vwd~  201 (368)
                       +..+..++   .+..++..+. .|..=.+|.+
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence             55544443   3444555343 4433336665

>PHA02713 hypothetical protein; Provisional

Probab=96.10  E-value=1.4  Score=42.18  Aligned_cols=67  Identities=9%  Similarity=0.125  Sum_probs=41.1

Q ss_pred             CCCEEEEEeCCC------cEEEEEECCC-Cc--eeEeeEeccCcccEEEEEEecCCCEEEEEeCCC--eEEEEEccCCCC
Q 017642          269 DGQLLATSSTKG------TLVRIFNTLD-GT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNSG  337 (368)
Q Consensus       269 ~g~~l~s~~~dg------~~i~iwd~~~-~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg--~i~iwd~~~~~~  337 (368)
                      +|++.+.|+.++      . +..||..+ .+  .+..+..  .......+.  -+|++.++|+.++  .+..||..+.+=
T Consensus       463 ~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--ccccceeEE--ECCEEEEEeeecceeehhhcCcccccc
Confidence            577777777542      3 67899876 33  2333332  111222222  2678888998888  788888888776


Q ss_pred             CCC
Q 017642          338 SAR  340 (368)
Q Consensus       338 ~~~  340 (368)
                      ..-
T Consensus       538 ~~~  540 (557)
T PHA02713        538 NHI  540 (557)
T ss_pred             cch
Confidence            543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.87  E-value=0.78  Score=37.47  Aligned_cols=131  Identities=12%  Similarity=0.091  Sum_probs=73.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeE--------EEEEEeCCeE-EEEecCCCCCCC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGV--------VEMLFRCNIL-ALVGGGPDPQYP  154 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~s~~~d~~~~  154 (368)
                      ..+.+.-..+|+|++++... |-+-   +++.....+...+. +|....        ..++|+.+.. +....+.+    
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~---~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln----  179 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGD---DLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN----  179 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccc---cccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCc----
Confidence            34455556789999854333 4331   22222222222221 222211        2345554433 33333333    


Q ss_pred             CCcEEEEe--CCCCc-----EEEEEec-----CCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642          155 LNKVMIWD--DHQSR-----CIGELSF-----RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGL  219 (368)
Q Consensus       155 ~~~i~vwd--~~~~~-----~~~~~~~-----~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~  219 (368)
                       -+|.-||  ..+|.     .+..++.     .-.--.+++..+|.+.+   ..++|...|..+|+.+.++......+++
T Consensus       180 -~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits  258 (310)
T KOG4499|consen  180 -YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS  258 (310)
T ss_pred             -eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence             5776677  55553     2333321     11234556666777665   5789999999999999999988889999


Q ss_pred             EEEec
Q 017642          220 CAVSQ  224 (368)
Q Consensus       220 ~~~~~  224 (368)
                      ++|--
T Consensus       259 ccFgG  263 (310)
T KOG4499|consen  259 CCFGG  263 (310)
T ss_pred             EEecC
Confidence            99854

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.70  E-value=0.21  Score=47.46  Aligned_cols=105  Identities=11%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             EEcCCCCEEEEEeCCe-EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC------
Q 017642           92 SFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------  164 (368)
Q Consensus        92 ~~s~~g~~l~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~------  164 (368)
                      .-+.-++..++..++. +.|||...........+.....+.-++|...+++..+.+.+-.     +.|.+|--.      
T Consensus        36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQLRYDYTN  110 (631)
T ss_pred             eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEccchhhhc
Confidence            3344455444444444 9999998877777777743445555566667788777777665     788888531      


Q ss_pred             ---CCcEEEEEe---c-CCceeEEEEeeCccEEE-eCCcEEEEEc
Q 017642          165 ---QSRCIGELS---F-RSEVRSVKLRRDRIIVV-LEQKIFVYNF  201 (368)
Q Consensus       165 ---~~~~~~~~~---~-~~~v~~~~~~~~~~~l~-~d~~i~vwd~  201 (368)
                         ....++.+.   + ..+|.+..|.++|.+++ .++.++|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence               123444443   3 37899999999999998 7889999984

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.70  E-value=1.8  Score=40.36  Aligned_cols=111  Identities=10%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             CCCEEEEEEcCCC-----CEEEEEeCCeEEEEEecC-----CCcceEEEcccCCc--eeEEEEEEeCCeEEEEecCCCCC
Q 017642           85 PPTLLHISFNQDH-----GCFAAGTDHGFRIYNCDP-----FREIFRRDFERGGG--IGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        85 ~~~v~~~~~s~~g-----~~l~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      -..|..+.|.|-+     .+||+-..+.|.||.+..     .+....+..+....  .---.+.|+|....++.-..   
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~---  132 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA---  132 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec---
Confidence            3469999999853     477887788899999852     22222222221122  22235667776654443322   


Q ss_pred             CCCCcE-EEEeCC--CCcEEEEEecCCceeEEEEeeCccEEE--eCC--cEEEEEc
Q 017642          153 YPLNKV-MIWDDH--QSRCIGELSFRSEVRSVKLRRDRIIVV--LEQ--KIFVYNF  201 (368)
Q Consensus       153 ~~~~~i-~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~--~i~vwd~  201 (368)
                         ..+ .++++.  .......++..+.|.|.+|.+||..++  .+.  .-++||-
T Consensus       133 ---~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  133 ---RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ---CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence               223 344443  334445566889999999999998877  232  5678875

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.68  E-value=1.6  Score=39.47  Aligned_cols=153  Identities=14%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             cCCCCEEEEEe---C----CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC------CC-------
Q 017642           94 NQDHGCFAAGT---D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------QY-------  153 (368)
Q Consensus        94 s~~g~~l~~~~---d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~------~~-------  153 (368)
                      -|+|++++++-   +    +++.++|-++.+..-.............++.+.+....+++.....      .|       
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            37898877653   2    2378888766555433222223345566777888776666654321      00       


Q ss_pred             --CCCcEEEEeCCCCcEEEEEecC---CceeEEEEeeC--ccEEE----eCCcEEEEEc-CCCe----EEEEEecc----
Q 017642          154 --PLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRD--RIIVV----LEQKIFVYNF-ADLK----LLHQIETI----  213 (368)
Q Consensus       154 --~~~~i~vwd~~~~~~~~~~~~~---~~v~~~~~~~~--~~~l~----~d~~i~vwd~-~~~~----~~~~~~~~----  213 (368)
                        -..++.+||+.+.+.++++...   .....+.|..+  ..+-+    ...+|..|-- +.++    .+-.+...    
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence              1368999999999999999832   34667777654  22211    3445544433 3332    12222111    


Q ss_pred             -------------CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642          214 -------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (368)
Q Consensus       214 -------------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~  248 (368)
                                   ..-++.+.+|.|.+.+++.+  -..|.|+.++.+.
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~--W~~GdvrqYDISD  343 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSN--WLHGDVRQYDISD  343 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEE--TTTTEEEEEE-SS
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEc--ccCCcEEEEecCC
Confidence                         23467899999999888765  4689999977654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.62  E-value=0.17  Score=50.31  Aligned_cols=142  Identities=11%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEE-----EEe------ccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          175 RSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLH-----QIE------TIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      .-.+..+...+|+...+     .+-.|..||+++.....     -+.      ....-..++.|.|.-....++  ...|
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av--~l~d  177 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV--DLSD  177 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh--hccc
Confidence            44566777777766554     23479999997643211     111      111223456666655433333  3468


Q ss_pred             CeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--CcccEEEEEEecC
Q 017642          239 GQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSN  314 (368)
Q Consensus       239 g~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~  314 (368)
                      +.|++.....  ..+.. ..-....++++|+|.|+.++.|-..|+ +.-|. ..++....+.+..  ....|.+|+|-..
T Consensus       178 lsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             cchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecc
Confidence            8888743332  22222 133456899999999999999999999 77775 3455444444321  1357999999877


Q ss_pred             CCEEEEE
Q 017642          315 AQWLAVS  321 (368)
Q Consensus       315 ~~~l~s~  321 (368)
                      ..+|++-
T Consensus       255 ~eflvvy  261 (1405)
T KOG3630|consen  255 QEFLVVY  261 (1405)
T ss_pred             eeEEEEe
Confidence            7776654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.61  E-value=0.39  Score=44.54  Aligned_cols=148  Identities=8%  Similarity=-0.023  Sum_probs=84.4

Q ss_pred             CCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC---eEEEEeecCCCCeEEEEec
Q 017642          175 RSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVEHY  246 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~g~~dg~i~i~~~  246 (368)
                      -.++.+++|......+.     .+|.+++=|-   +.+.    ....|..+.|.|-+.   --++|.  .....|.||..
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viG----qFEhV~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL   89 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIG----QFEHVHGLSWAPPCTADTPALLAV--QHKKHVTVWQL   89 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCc---cEee----ccceeeeeeecCcccCCCCceEEE--eccceEEEEEe
Confidence            34677888864333333     2555554442   2232    233567788888632   134554  25678888876


Q ss_pred             Ccc------eeeeeeccC-c----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          247 ASK------RTKFIMAHD-S----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       247 ~~~------~~~~~~~~~-~----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      ...      .+.....+- .    --..+.|+|...+|++-..... -.+++++........... ..+.|.|.+|.+||
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG  167 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK-TSGLIHCACWTKDG  167 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc-CCceEEEEEecCcC
Confidence            521      111111111 1    1245779999998888777664 456666543322222222 46789999999999


Q ss_pred             CEEEEEe-CCCeEEEEEcc
Q 017642          316 QWLAVSS-DKGTVHVFNLK  333 (368)
Q Consensus       316 ~~l~s~s-~dg~i~iwd~~  333 (368)
                      +.|+++- ..=.-+|||=.
T Consensus       168 ~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CEEEEEeCCeEEEEEecCc
Confidence            9887663 33346678743

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.51  E-value=2.9  Score=41.45  Aligned_cols=214  Identities=12%  Similarity=0.210  Sum_probs=118.6

Q ss_pred             EEEEEecCCCcceEEEccc-CCceeEEEEEEeCC-eE-EEEecCCC-C---CCCCCcEEEEeCCCCcE---EEEEecCCc
Q 017642          108 FRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCN-IL-ALVGGGPD-P---QYPLNKVMIWDDHQSRC---IGELSFRSE  177 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~s~~~d-~---~~~~~~i~vwd~~~~~~---~~~~~~~~~  177 (368)
                      ++++|-++.+......+.. .....+.+..|..+ .. ++++.+.- +   .-..|.|.++....++.   +.+....+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            6667666555544434420 11223333445543 33 33332210 0   01236777777666332   333335666


Q ss_pred             eeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--EecCcceeeee
Q 017642          178 VRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFI  254 (368)
Q Consensus       178 v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~  254 (368)
                      +.++..- +|++++ -+..|++|+..+++.++.-..+..++..+.+.-.++.+++   |..-+.+.+  +.........+
T Consensus       832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V---gDlm~Sitll~y~~~eg~f~ev  907 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV---GDLMRSITLLQYKGDEGNFEEV  907 (1096)
T ss_pred             eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE---eeccceEEEEEEeccCCceEEe
Confidence            6666543 677777 7899999999888777776677888888999888886443   445566666  33333223222


Q ss_pred             --eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-------------------CceeEeeEeccCcccEEEE--EE
Q 017642          255 --MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------------------GTLLQEVRRGADRAEIYSL--AF  311 (368)
Q Consensus       255 --~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-------------------~~~~~~~~~~~~~~~v~~l--~~  311 (368)
                        .-+....+++.+-.+. .++-+..+|. +.+-...+                   |+.+..++   |..-|..+  .-
T Consensus       908 ArD~~p~Wmtaveil~~d-~ylgae~~gN-lf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~---hg~lv~~~~~s~  982 (1096)
T KOG1897|consen  908 ARDYNPNWMTAVEILDDD-TYLGAENSGN-LFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR---HGSLVMQLGDSM  982 (1096)
T ss_pred             ehhhCccceeeEEEecCc-eEEeeccccc-EEEEEecCCCCchhhhhcccceeeEEeccceeeee---ecceEeeccccc
Confidence              2356677777776444 4455566666 66654332                   22333333   33333331  22


Q ss_pred             ecCCCEEEEEeCCCeEEEE
Q 017642          312 SSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iw  330 (368)
                      +|-+..++.|..+|.|-+-
T Consensus       983 ~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  983 IPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             cCCCCcEEEEEccceEEEE
Confidence            3444557788888887654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.51  E-value=0.61  Score=44.93  Aligned_cols=114  Identities=17%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------c--------------eeeeeeccCcceEEEEEC--CCCCEE
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------K--------------RTKFIMAHDSRIACFALT--QDGQLL  273 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~--------------~~~~~~~~~~~i~~v~~s--p~g~~l  273 (368)
                      |+.+.+..-|..-+|++ +..||.|.+|....       .              +...+ .-...+++++++  ...++|
T Consensus       103 IN~i~v~~lg~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeEEEecccCCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence            44454444444444444 56899999985421       0              00111 123468899998  777788


Q ss_pred             EEEeCCCcEEEEEECCCC-ceeEeeEeccCcccEEEEEEecCC---C---EEEEEeCCCeEEEEEcc
Q 017642          274 ATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA---Q---WLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~---~---~l~s~s~dg~i~iwd~~  333 (368)
                      |+++.... |.||-.... +.......+.+...|-+|+|-++.   .   .|++++-.|.+.+|++.
T Consensus       181 AVSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  181 AVSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            88888777 888865442 111111122245578999997644   2   77788899999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.48  E-value=0.019  Score=55.08  Aligned_cols=155  Identities=16%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             cCCceeEEEEeeCc-cEE-EeCCcEEEEEcC--CCeEEEEE-----eccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-
Q 017642          174 FRSEVRSVKLRRDR-IIV-VLEQKIFVYNFA--DLKLLHQI-----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-  243 (368)
Q Consensus       174 ~~~~v~~~~~~~~~-~~l-~~d~~i~vwd~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-  243 (368)
                      ..+.|-.+.|..-. ..+ ..-|.+.|||+.  .|+....+     ......+..+.|+|---.-..+|.|..++.+++ 
T Consensus       131 f~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL  210 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLL  210 (1283)
T ss_pred             CCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEe
Confidence            55666666664321 111 134667777763  34332222     222333445556553222133444788899998 


Q ss_pred             -EecCcceeeeeeccCcceEEE-----------EECCCCCEEEEEeCCCcEEEEEECC-----CCceeEeeEeccCc-cc
Q 017642          244 -EHYASKRTKFIMAHDSRIACF-----------ALTQDGQLLATSSTKGTLVRIFNTL-----DGTLLQEVRRGADR-AE  305 (368)
Q Consensus       244 -~~~~~~~~~~~~~~~~~i~~v-----------~~sp~g~~l~s~~~dg~~i~iwd~~-----~~~~~~~~~~~~~~-~~  305 (368)
                       |+....  ..+.+|...+..+           ..+|||+.+++++.||. +++|.+.     ...+++..+.  |. .+
T Consensus       211 ~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkp--hd~~p  285 (1283)
T KOG1916|consen  211 NINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKP--HDKHP  285 (1283)
T ss_pred             eechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCC--CCCCC
Confidence             554433  4455676655443           36899999999999998 8887653     3345555555  33 23


Q ss_pred             EEEEEEecCC---------CEEEEEe-CCCeEEEEEcc
Q 017642          306 IYSLAFSSNA---------QWLAVSS-DKGTVHVFNLK  333 (368)
Q Consensus       306 v~~l~~sp~~---------~~l~s~s-~dg~i~iwd~~  333 (368)
                      -.|.-|+.+.         .++++++ .+..+++|...
T Consensus       286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             ceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence            3233243221         2344544 34558888654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.39  E-value=1.6  Score=37.81  Aligned_cols=232  Identities=14%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEccc---CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      ...+..|.|..+..-+++|..+.  |+....+..........   ........+.|..+..++++ .       ..+.+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~-------~g~ll~   85 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-E-------PGLLLH   85 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-E-------TTEEEE
T ss_pred             CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-C-------CceEEE
Confidence            44789999997677777777664  35554444433322110   11234566777776655544 2       234444


Q ss_pred             eCCCCcEEEEEe----cCCceeEEEEeeCccEEE-e-CCcEEEEEcCC-CeEE-EEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          162 DDHQSRCIGELS----FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFAD-LKLL-HQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       162 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~-~-d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      -.+.|+.=..+.    ..+....+....++..++ . .|.  ||-..+ |+.= .......+.+..+..+++|..  +++
T Consensus        86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~--vav  161 (302)
T PF14870_consen   86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRY--VAV  161 (302)
T ss_dssp             ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-E--EEE
T ss_pred             ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcE--EEE
Confidence            434454333322    233444444444444333 2 233  333333 3221 122334456677777888874  443


Q ss_pred             ecCCCCeEEE-EecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEE-CCCCceeEe--eEeccCcccEEE
Q 017642          234 PGLQKGQVRV-EHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLLQE--VRRGADRAEIYS  308 (368)
Q Consensus       234 ~g~~dg~i~i-~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd-~~~~~~~~~--~~~~~~~~~v~~  308 (368)
                       + ..|.+.+ |+.....-... ..-...|..|.|.|++.+.+.+ ..|. |++=+ ....+....  .......-.+.+
T Consensus       162 -s-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld  237 (302)
T PF14870_consen  162 -S-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILD  237 (302)
T ss_dssp             -E-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEE
T ss_pred             -E-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEE
Confidence             2 4677777 76554322222 2345689999999998865544 6776 77776 222222211  111112235899


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ++|.+++...++|+ .|.+ +...+.++
T Consensus       238 ~a~~~~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  238 LAYRPPNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             EEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred             EEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence            99999888887665 4433 33444343

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.38  E-value=3.2  Score=41.13  Aligned_cols=140  Identities=13%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             CcEEEEeCCCCcEEEEEecCCcee-------------EEEEee---CccEEEe------------CCcEEEEEcCCCeEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVR-------------SVKLRR---DRIIVVL------------EQKIFVYNFADLKLL  207 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~l~~------------d~~i~vwd~~~~~~~  207 (368)
                      +.|.-.|.++|+.+..+...+.|.             .+.-.|   ++.+++.            +|.|+-+|.++|+.+
T Consensus       270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            899999999999987765433321             011111   4444441            478999999999998


Q ss_pred             EEEeccC---------CC--------e-eEEEEecCCCeEEEEeecC-----------------CCCeEEEEecCcceee
Q 017642          208 HQIETIA---------NP--------K-GLCAVSQGVGSLVLVCPGL-----------------QKGQVRVEHYASKRTK  252 (368)
Q Consensus       208 ~~~~~~~---------~~--------v-~~~~~~~~~~~~~l~~~g~-----------------~dg~i~i~~~~~~~~~  252 (368)
                      ..+....         +.        + ...++.+....+++-. |.                 .+..+.++..+++..-
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W  428 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW  428 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence            8775210         00        0 1233333333333321 11                 1122223444444444


Q ss_pred             eeec-cC-c-------ceEEEEECC-CCC---EEEEEeCCCcEEEEEECCCCceeEee
Q 017642          253 FIMA-HD-S-------RIACFALTQ-DGQ---LLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       253 ~~~~-~~-~-------~i~~v~~sp-~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      .++. |. -       ...-+.+.- +|+   .++.++.+|. +.++|.++|+.+...
T Consensus       429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV  485 (764)
T ss_pred             EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence            4432 11 0       011122222 563   7889999999 999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.35  E-value=0.37  Score=47.04  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=53.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEECCC----------Cce---eEeeE------eccCcccEEEEEEecC---CC
Q 017642          259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTL---LQEVR------RGADRAEIYSLAFSSN---AQ  316 (368)
Q Consensus       259 ~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~---~~~~~------~~~~~~~v~~l~~sp~---~~  316 (368)
                      -.|..|.++++|++|+..|..|  |.|..+..          |+.   .+.+.      .......|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3688999999999999998877  55555532          111   11111      1113457899999996   47


Q ss_pred             EEEEEeCCCeEEEEEccCCC
Q 017642          317 WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .|++-..|++||+||+...+
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888999999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.14  E-value=1.6  Score=39.31  Aligned_cols=138  Identities=17%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             CceeEEEEeeCccEEEeC---------------CcEEEEEcCC--Ce--EEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          176 SEVRSVKLRRDRIIVVLE---------------QKIFVYNFAD--LK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~~d---------------~~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      .....|+|.++|++++.+               +.|.+++-.+  |+  ....+.........+++.+++  ++++.   
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~---   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT---   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence            446678888888877732               2676666432  33  223343333344667887777  44432   


Q ss_pred             CCCeEEEEecCc------c--eee-eeec----cCcceEEEEECCCCCEEEEEeCC-------------------CcEEE
Q 017642          237 QKGQVRVEHYAS------K--RTK-FIMA----HDSRIACFALTQDGQLLATSSTK-------------------GTLVR  284 (368)
Q Consensus       237 ~dg~i~i~~~~~------~--~~~-~~~~----~~~~i~~v~~sp~g~~l~s~~~d-------------------g~~i~  284 (368)
                      .....++.+.++      +  .+. .+..    +......++|.|||++.++-+..                   |. |.
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~  167 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LF  167 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EE
Confidence            334344433322      1  111 1211    23447789999999866654421                   33 45


Q ss_pred             EEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      -+|...++ +..+..+  -.....++|+++|+++++-.
T Consensus       168 r~~pdg~~-~e~~a~G--~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       168 RYNPDGGK-LRVVAHG--FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EEecCCCe-EEEEecC--cCCCccceECCCCCEEEEcc
Confidence            55544433 2233321  23457899999999887644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.11  E-value=1.8  Score=36.68  Aligned_cols=145  Identities=12%  Similarity=0.001  Sum_probs=81.9

Q ss_pred             eEEEEEEeCCe--EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEE-cCCC
Q 017642          131 GVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYN-FADL  204 (368)
Q Consensus       131 ~~~~~~~~~~~--~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd-~~~~  204 (368)
                      .+.+.+.++++  .+++....+    ...|+++..  +...........+..-.|++++.+.+   .+...+++. ..++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~----~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDG----GRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCC----CCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            34455555544  444441121    145666653  33333332444788889999987766   244555553 3333


Q ss_pred             eEE-EEEecc--CCCeeEEEEecCCCeEEEEeecCCCCeEEEE--ec--Cc------ceeeeeeccCcceEEEEECCCCC
Q 017642          205 KLL-HQIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HY--AS------KRTKFIMAHDSRIACFALTQDGQ  271 (368)
Q Consensus       205 ~~~-~~~~~~--~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~--~~--~~------~~~~~~~~~~~~i~~v~~sp~g~  271 (368)
                      +.. ..+...  ...|..+.+++||..+.++.....++.|.+-  ..  .+      ............+..++|.+++.
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            322 222222  1279999999999998888755567888772  11  22      01111123345789999999998


Q ss_pred             EEEEEeCCCc
Q 017642          272 LLATSSTKGT  281 (368)
Q Consensus       272 ~l~s~~~dg~  281 (368)
                      +++.+...+.
T Consensus       179 L~V~~~~~~~  188 (253)
T PF10647_consen  179 LVVLGRSAGG  188 (253)
T ss_pred             EEEEeCCCCC
Confidence            7776655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.08  E-value=0.13  Score=29.56  Aligned_cols=31  Identities=26%  Similarity=0.462  Sum_probs=25.3

Q ss_pred             cceEEEEECCCCC---EEEEEeCCCcEEEEEECCC
Q 017642          259 SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       259 ~~i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~  290 (368)
                      +.|+++.|+|+..   +|+.+-.-|. |.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            3689999998544   8888777788 99999985

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.07  E-value=1.5  Score=41.96  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CCCCeEEEEecCcceeeeee--ccCcceEEEEEC--CCCCEEEEEeCCCcEEEEEECC---------CCceeEeeEeccC
Q 017642          236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTL---------DGTLLQEVRRGAD  302 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~~~--~~~~~i~~v~~s--p~g~~l~s~~~dg~~i~iwd~~---------~~~~~~~~~~~~~  302 (368)
                      +....+.||+........-.  ...+.|..+.|.  |+|+.+++.+-... |.++--.         +...+..+.-..+
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~  126 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKIDISSH  126 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEEEeecC
Confidence            34567888998876543322  346789999886  68887777777777 8888532         1234444432222


Q ss_pred             c-ccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          303 R-AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       303 ~-~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      . .+|.+..|.++|.+++.+  ++.+.|+|-.-
T Consensus       127 T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  127 TPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL  157 (631)
T ss_pred             CCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence            2 579999999999877654  35688887533

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=1.6  Score=35.15  Aligned_cols=175  Identities=13%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC-CceeEEEEe--eCccEEE--eCCcEEEEEcCCCeEE
Q 017642          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLR--RDRIIVV--LEQKIFVYNFADLKLL  207 (368)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~--~~~~~l~--~d~~i~vwd~~~~~~~  207 (368)
                      ..+.+..+ ..+.+.+.   |....|++||+.+|+.+..-.-. ..+..=-..  .|..+..  .+|....+|.++.+++
T Consensus        49 QGL~~~~g-~i~esTG~---yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~l  124 (262)
T COG3823          49 QGLEYLDG-HILESTGL---YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEEL  124 (262)
T ss_pred             cceeeeCC-EEEEeccc---cccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhh
Confidence            34455555 33333332   22367999999999888776522 233222222  2333333  5899999999888877


Q ss_pred             EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-Ee--cCcceeeeee--ccC---cceEEEEECCCCCEEEEEeCC
Q 017642          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EH--YASKRTKFIM--AHD---SRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~--~~~~~~~~~~--~~~---~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      ..+.- .+.  ...+..|++.+++.     ||.-.+ |.  .+.....++.  ...   ..++.+.|- ||.++|-.=.+
T Consensus       125 g~~~y-~Ge--GWgLt~d~~~Lims-----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t  195 (262)
T COG3823         125 GRFSY-EGE--GWGLTSDDKNLIMS-----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQT  195 (262)
T ss_pred             ccccc-CCc--ceeeecCCcceEee-----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeee
Confidence            66542 222  23455677664331     444444 21  1111111111  111   123334443 56555544444


Q ss_pred             CcEEEEEECCCCceeEeeEe----------ccCcccEEEEEEecCC-CEEEEE
Q 017642          280 GTLVRIFNTLDGTLLQEVRR----------GADRAEIYSLAFSSNA-QWLAVS  321 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~----------~~~~~~v~~l~~sp~~-~~l~s~  321 (368)
                      .. |...|..+|+.+..+..          ..+..-.+.+++.|++ +++++|
T Consensus       196 ~~-I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         196 TR-IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cc-eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44 56666666666554432          1134467889999987 455555

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.86  E-value=3.1  Score=40.05  Aligned_cols=194  Identities=12%  Similarity=0.118  Sum_probs=98.8

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE--E--e-cCCceeEEE
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L--S-FRSEVRSVK  182 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~--~--~-~~~~v~~~~  182 (368)
                      |+||+... ... ...+. .+. .++.|-|+.+...++-.-.      |++.+|++.. +.+..  .  . ....|..+.
T Consensus        66 I~If~~sG-~lL-~~~~w-~~~-~lI~mgWs~~eeLI~v~k~------g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~  134 (829)
T KOG2280|consen   66 IRIFNISG-QLL-GRILW-KHG-ELIGMGWSDDEELICVQKD------GTVHVYGLLG-EFIESNSVGFESQMSDIVECR  134 (829)
T ss_pred             EEEEeccc-cch-HHHHh-cCC-CeeeecccCCceEEEEecc------ceEEEeecch-hhhcccccccccccCceeEEE
Confidence            77777542 222 12221 233 7889999988777666543      9999999643 32222  2  1 334566667


Q ss_pred             EeeCccEEE-eCCcEEEEEcCCCeEEEEEec-cCCCe--eEEEEecCCCeEEEEe-ecCCCCeEEE-EecCcceeeeeec
Q 017642          183 LRRDRIIVV-LEQKIFVYNFADLKLLHQIET-IANPK--GLCAVSQGVGSLVLVC-PGLQKGQVRV-EHYASKRTKFIMA  256 (368)
Q Consensus       183 ~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~-~~~~v--~~~~~~~~~~~~~l~~-~g~~dg~i~i-~~~~~~~~~~~~~  256 (368)
                      +..+|..+. .+|.+.+-+-.....++.+.. .....  .+....+++....+.. ..-..+.... -.........+..
T Consensus       135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~  214 (829)
T KOG2280|consen  135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW  214 (829)
T ss_pred             EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence            767777666 566666554322222333322 11111  2222223322111111 0000010000 0111111112222


Q ss_pred             cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       257 ~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      ....+..+..||+.++|+--...|. |.+-++...+...++....|. .-..++|.-+
T Consensus       215 ~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn  270 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN  270 (829)
T ss_pred             CCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence            2355788899999999999999999 988888777766666633222 2235555543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.85  E-value=2.2  Score=36.29  Aligned_cols=193  Identities=9%  Similarity=0.092  Sum_probs=112.6

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEc
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNF  201 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~  201 (368)
                      +....+.++.|+++...+++..+.     ..-.|+=..+|+.+.++.  .-.....+.+..+|.+++   .++.++++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccceeeCCCcceEEEecCC-----CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            444558899999987776665554     556666668899999887  445667788889999888   3677887777


Q ss_pred             CCCeEEE-------EEe---ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce--e--eeeecc-------Ccc
Q 017642          202 ADLKLLH-------QIE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--T--KFIMAH-------DSR  260 (368)
Q Consensus       202 ~~~~~~~-------~~~---~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~--~--~~~~~~-------~~~  260 (368)
                      .....+.       .+.   ........++|.+..+.++++-   +-.-+.|+..+...  +  .....+       -..
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            5442111       111   1133456799999998877653   34445553322211  1  111111       234


Q ss_pred             eEEEEECCC-CCEEEEEeCCCcEEEEEECCCCceeEeeEe--ccCc-----ccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642          261 IACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADR-----AEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       261 i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~-----~~v~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                      |.++.|++. +.+|+-+.+++. +.-.|. +|+.+..+..  +.|.     ..-..|+...+|.+.++ |+-+-.+.+
T Consensus       235 vSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv-SEPnlfy~F  309 (316)
T COG3204         235 VSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV-SEPNLFYRF  309 (316)
T ss_pred             cccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE-ecCCcceec
Confidence            677888864 446666666666 777774 4554444332  2111     12345777776664443 455534333

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.84  E-value=2.7  Score=37.27  Aligned_cols=236  Identities=14%  Similarity=0.073  Sum_probs=114.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCc-ceEEEc---ccCCceeEEEEEEeC-----CeEEEEecCCCCCCCC--
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE-IFRRDF---ERGGGIGVVEMLFRC-----NILALVGGGPDPQYPL--  155 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~s~~~d~~~~~--  155 (368)
                      .-+.|+|.|||++|++-..+.|++++ ..+.. .....+   ..........+++++     ..++++....+.....  
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            45789999999988876677799998 33232 111111   124566788999998     3444444421000000  


Q ss_pred             CcEEEEeCCCC-------cEEE-EEec----CCceeEEEEeeCccEEE--e--------------CCcEEEEEcCCCeE-
Q 017642          156 NKVMIWDDHQS-------RCIG-ELSF----RSEVRSVKLRRDRIIVV--L--------------EQKIFVYNFADLKL-  206 (368)
Q Consensus       156 ~~i~vwd~~~~-------~~~~-~~~~----~~~v~~~~~~~~~~~l~--~--------------d~~i~vwd~~~~~~-  206 (368)
                      ..|.-|....+       +.+. .+..    ...-..|.|.|||.+.+  .              .|.|.-.+. +++. 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCC
Confidence            23443443332       1111 1112    34456799999997766  1              133444443 2220 


Q ss_pred             ------------EEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEE-EecCc------------------------
Q 017642          207 ------------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYAS------------------------  248 (368)
Q Consensus       207 ------------~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~------------------------  248 (368)
                                  ...+ .++.+ ...++|.+....++.+-.| .++.=.| ....+                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                        0111 12222 2358888884444444323 3332223 11111                        


Q ss_pred             -----ceeeeeeccCcceEEEEECC-------CCCEEEEEeCCCcEEEEEECCCCceeEeeEe--ccCcccEEEEEEecC
Q 017642          249 -----KRTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSN  314 (368)
Q Consensus       249 -----~~~~~~~~~~~~i~~v~~sp-------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~  314 (368)
                           .++..+..| ..+..+.|-.       .|.++++.-..+. |....+..+..+.....  ......+..|++.||
T Consensus       239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                 011112223 4456666653       3445555554555 77777764433322211  113347999999999


Q ss_pred             CCEEEEEeCCCeEE
Q 017642          315 AQWLAVSSDKGTVH  328 (368)
Q Consensus       315 ~~~l~s~s~dg~i~  328 (368)
                      |.++++-..+|.|+
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            99988888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.72  E-value=1.9  Score=34.98  Aligned_cols=150  Identities=20%  Similarity=0.172  Sum_probs=80.5

Q ss_pred             eeEEEEee-CccEEE-eCCcEEEEEcC--CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC---eEEE---EecC
Q 017642          178 VRSVKLRR-DRIIVV-LEQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG---QVRV---EHYA  247 (368)
Q Consensus       178 v~~~~~~~-~~~~l~-~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg---~i~i---~~~~  247 (368)
                      ...++-.. |-.+++ ....|.+|++.  ..+.+..|..- +.|..+.++..|++++.+=.-....   .+|+   |...
T Consensus        20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence            33444444 444454 67789999987  34556666543 6788899999998744432211222   4455   5443


Q ss_pred             c---ceee-eeecc---------------------CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-e-----Ee
Q 017642          248 S---KRTK-FIMAH---------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-L-----QE  296 (368)
Q Consensus       248 ~---~~~~-~~~~~---------------------~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-~-----~~  296 (368)
                      .   ..+. .+-+|                     ...+.+++-.|-.--|+.|+.+ . +.||.+..... .     ..
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~-l~lf~l~~~~~~~~~~~~lD  176 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-K-LVLFTLKYQTIQSEKFSFLD  176 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-E-EEEEEEEEEEEecccccEEe
Confidence            1   1111 12121                     2345677777743345556654 4 88997754332 1     11


Q ss_pred             eEe----ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          297 VRR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       297 ~~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      |..    +...-....++|.  +.++|..+ +-.++++.+.
T Consensus       177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  177 FERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             chhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence            111    0011234566665  45777665 5568888764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.67  E-value=0.14  Score=29.43  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             ccEEEEEEecCC---CEEEEEeCCCeEEEEEccC
Q 017642          304 AEIYSLAFSSNA---QWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       304 ~~v~~l~~sp~~---~~l~s~s~dg~i~iwd~~~  334 (368)
                      +.|.++.|+|..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368999999854   4788777789999999985

It contains a characteristic DLL sequence motif.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.62  E-value=0.78  Score=46.58  Aligned_cols=156  Identities=15%  Similarity=0.279  Sum_probs=90.2

Q ss_pred             cCCceeEEEEeeC-cc-EEEeCCcEEEEEcCCCeEEEEEeccCCCeeEEEE--------ecCCCeEEEEeecCCCCeEEE
Q 017642          174 FRSEVRSVKLRRD-RI-IVVLEQKIFVYNFADLKLLHQIETIANPKGLCAV--------SQGVGSLVLVCPGLQKGQVRV  243 (368)
Q Consensus       174 ~~~~v~~~~~~~~-~~-~l~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~l~~~g~~dg~i~i  243 (368)
                      +...-..+-+-|. ++ ++..|+.+.+|+.+++.....+.+....|-.+.+        -+.=++++++++   --.|.+
T Consensus        77 ~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~i  153 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVI  153 (1311)
T ss_pred             CcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEE
Confidence            3333444555553 33 3337999999999987766777665555544432        333345444432   222333


Q ss_pred             ----EecCccee------eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEE--EECCCC---c-e--------------
Q 017642          244 ----EHYASKRT------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI--FNTLDG---T-L--------------  293 (368)
Q Consensus       244 ----~~~~~~~~------~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~i--wd~~~~---~-~--------------  293 (368)
                          .+......      ..+......|+|+....+|+++++|- ||. |.=  |....+   + +              
T Consensus       154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhh
Confidence                11111111      12223355788999888888766555 444 331  221111   1 0              


Q ss_pred             --eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          294 --LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       294 --~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                        +..+. +.+..+|..++.....+.|.+-++.|+|.+|++...
T Consensus       232 Ps~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  232 PSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence              11122 225678999999888889999999999999999874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.24  E-value=0.18  Score=40.82  Aligned_cols=100  Identities=10%  Similarity=0.082  Sum_probs=57.9

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-  173 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-  173 (368)
                      +.-|++|+ ++.|.+|+.........+..  .....+..+.... +....+.+..+     |.|+.|++.-++.+.... 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~d-----g~ir~~n~~p~k~~g~~g~  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQD-----GRIRACNIKPNKVLGYVGQ  142 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccC-----CceeeeccccCceeeeecc
Confidence            34566666 88899998763332221111  2222333333333 33344555555     999999998888777666 


Q ss_pred             cC-CceeEEEEeeCccEEE-----eCCcEEEEEcCC
Q 017642          174 FR-SEVRSVKLRRDRIIVV-----LEQKIFVYNFAD  203 (368)
Q Consensus       174 ~~-~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~  203 (368)
                      |. ..+........+.++.     .|..++.|++..
T Consensus       143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            55 4555555555554444     366777777754

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.17  E-value=0.38  Score=39.62  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCceeEee------Eec------cCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV------RRG------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~------~~~------~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +..++.+|++.+.+|. +++||+.+++.+..-      -..      .....|..+.++.+|.-+++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3447889999999999 999999988765432      100      1345788999999998877765 5678888876


Q ss_pred             CCC
Q 017642          334 VNS  336 (368)
Q Consensus       334 ~~~  336 (368)
                      -+.
T Consensus        96 L~~   98 (219)
T PF07569_consen   96 LGC   98 (219)
T ss_pred             cce
Confidence            654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.14  E-value=1.5  Score=40.06  Aligned_cols=137  Identities=15%  Similarity=0.214  Sum_probs=86.4

Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc--------cEEE--eCCcEEEEEcCC-CeEEEE
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--------IIVV--LEQKIFVYNFAD-LKLLHQ  209 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~--~d~~i~vwd~~~-~~~~~~  209 (368)
                      .+.+..++..     ..++-.|++.|+.+.++.....| -+.+.|+.        ..++  ++..|.-.|.+- |..+..
T Consensus       480 sli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         480 SLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             ceEEecCCCc-----ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            3444455544     78888999999999999955555 66777753        2233  677777777653 333322


Q ss_pred             Eec----cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          210 IET----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       210 ~~~----~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      .+.    ......+..-...|   ++|+ ++..|.|+++++-+... ..+.+....|..|..+.+|+++++.+.. . +.
T Consensus       554 ~esKdY~tKn~Fss~~tTesG---yIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-ll  627 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESG---YIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-LL  627 (776)
T ss_pred             eeehhccccccccccccccCc---eEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-EE
Confidence            221    11122222222233   4555 77899999976655443 4467778889999999999977766654 3 77


Q ss_pred             EEECC
Q 017642          285 IFNTL  289 (368)
Q Consensus       285 iwd~~  289 (368)
                      +-|++
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            77764

>PHA02713 hypothetical protein; Provisional

Probab=94.06  E-value=5.8  Score=37.99  Aligned_cols=25  Identities=12%  Similarity=0.104  Sum_probs=20.0

Q ss_pred             CCCEEEEEeCCC--cEEEEEECCCCcee
Q 017642          269 DGQLLATSSTKG--TLVRIFNTLDGTLL  294 (368)
Q Consensus       269 ~g~~l~s~~~dg--~~i~iwd~~~~~~~  294 (368)
                      +|++.++|+.+|  . +..||..+.+-.
T Consensus       512 ~~~iyv~Gg~~~~~~-~e~yd~~~~~W~  538 (557)
T PHA02713        512 DNTIMMLHCYESYML-QDTFNVYTYEWN  538 (557)
T ss_pred             CCEEEEEeeecceee-hhhcCccccccc
Confidence            788899999888  6 788888776644

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.91  E-value=3.7  Score=35.21  Aligned_cols=204  Identities=11%  Similarity=0.075  Sum_probs=113.3

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC------CC-cEEEEEe------cCCceeEEEEeeCccE-----
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------QS-RCIGELS------FRSEVRSVKLRRDRII-----  189 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~------~~-~~~~~~~------~~~~v~~~~~~~~~~~-----  189 (368)
                      .-...+.++++|.+.+.++....     +...+||..      .. ..+..+.      .....+.+.|+....+     
T Consensus        21 ~L~N~WGia~~p~~~~WVadngT-----~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~   95 (336)
T TIGR03118        21 GLRNAWGLSYRPGGPFWVANTGT-----GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE   95 (336)
T ss_pred             cccccceeEecCCCCEEEecCCc-----ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence            33456778888877777766655     889999976      12 2233332      1346777777753322     


Q ss_pred             --------EE--eCCcEEEEEcCCCeE-----EEEEec-cCCCe-eEEEEecC--CCeEEEEeecCCCCeEEEEecCcce
Q 017642          190 --------VV--LEQKIFVYNFADLKL-----LHQIET-IANPK-GLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKR  250 (368)
Q Consensus       190 --------l~--~d~~i~vwd~~~~~~-----~~~~~~-~~~~v-~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~~~~~  250 (368)
                              |.  .||+|.-|.-.-+..     ...+.. ....+ ..+++...  ++.++ ++ --..++|.+++..-.+
T Consensus        96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LY-aa-dF~~g~IDVFd~~f~~  173 (336)
T TIGR03118        96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLY-AA-NFRQGRIDVFKGSFRP  173 (336)
T ss_pred             CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEE-Ee-ccCCCceEEecCcccc
Confidence                    22  588888888522211     122221 12233 34566544  34433 32 4568888887666554


Q ss_pred             eeeeeccCc--------c--e---------EEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          251 TKFIMAHDS--------R--I---------ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       251 ~~~~~~~~~--------~--i---------~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      +..-.....        +  |         +-..-.++++.=+.|..-|. |-+||+ .|+.++++.....-..-+.|+.
T Consensus       174 ~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~-~G~l~~r~as~g~LNaPWG~a~  251 (336)
T TIGR03118       174 PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTL-NGQLLRRVASSGRLNAPWGLAI  251 (336)
T ss_pred             ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcC-CCcEEEEeccCCcccCCceeee
Confidence            322111111        0  1         11111222222233344567 999995 7888888864323345677777


Q ss_pred             ec------CCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          312 SS------NAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       312 sp------~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      .|      .|.+|+---.||+|..||..+++-...
T Consensus       252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~  286 (336)
T TIGR03118       252 APESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQ  286 (336)
T ss_pred             ChhhhCCCCCCeEEeecCCceeEEecCCCCceeee
Confidence            55      456666555799999999988875433

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.62  E-value=3.6  Score=39.59  Aligned_cols=172  Identities=13%  Similarity=0.275  Sum_probs=92.2

Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEE--E--eccCCCeeEEEEecCCCe
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ--I--ETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~  228 (368)
                      -.|+|++ -+|..+..+. ..+.+..+.|+.+..+++  .+|++++|++- |+.+..  +  +.....|..+.+..+|  
T Consensus        64 ~~I~If~-~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G--  139 (829)
T KOG2280|consen   64 PYIRIFN-ISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG--  139 (829)
T ss_pred             eeEEEEe-ccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc--
Confidence            4688888 5677766665 444889999999998888  79999999984 333222  1  1222334444444444  


Q ss_pred             EEEEeecCCCCeEEE-EecCcceeeeeec---cCcceEEEEECCCCC---EEE-EEeCCCcEEEEEECCCCc-eeEeeEe
Q 017642          229 LVLVCPGLQKGQVRV-EHYASKRTKFIMA---HDSRIACFALTQDGQ---LLA-TSSTKGTLVRIFNTLDGT-LLQEVRR  299 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i-~~~~~~~~~~~~~---~~~~i~~v~~sp~g~---~l~-s~~~dg~~i~iwd~~~~~-~~~~~~~  299 (368)
                      +++..   .+|.+.+ ..........+..   ..-+-.|-...+++.   .++ ..-..+  ..+.-..... ....+..
T Consensus       140 Vavlt---~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~--~~~~q~~~~~~q~~~~~~  214 (829)
T KOG2280|consen  140 VAVLT---VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG--LHICQVEESRVQLHALSW  214 (829)
T ss_pred             eEEEe---cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh--hcccceecccccccccCC
Confidence            22222   3566665 3333322222221   111212222222221   121 111122  1222222211 1112222


Q ss_pred             ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                        ..+.+..+..||++++|+--..+|.|.+-+++..+.-
T Consensus       215 --~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  215 --PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             --CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence              1246888999999999998889999888887765543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.56  E-value=4.2  Score=34.65  Aligned_cols=225  Identities=12%  Similarity=0.092  Sum_probs=121.2

Q ss_pred             EcCCCCEEEEEe-CCeEEEEEecCCCcc-eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc---
Q 017642           93 FNQDHGCFAAGT-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR---  167 (368)
Q Consensus        93 ~s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~---  167 (368)
                      |.-.|++..++. +.++-++|+.+.... +...+. ........++.+++..+.+.-+       +-+.+.|+....   
T Consensus       134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya-~~~~d~~~v~ISGn~AYvA~~d-------~GL~ivDVSnp~sPv  205 (370)
T COG5276         134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA-LPGGDTHDVAISGNYAYVAWRD-------GGLTIVDVSNPHSPV  205 (370)
T ss_pred             EEecCCEEEEeeccCcEEEEECCCCCCceeeeeec-cCCCCceeEEEecCeEEEEEeC-------CCeEEEEccCCCCCe
Confidence            444688988888 999999999765443 222332 2223335666777776666433       779999987653   


Q ss_pred             EEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          168 CIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       168 ~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      .+..+.....+..+..+++..+++ .+..+.+-|..+.+....+.  ...+++..-.+.-.++..+++- | ..|...++
T Consensus       206 li~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad-g-a~gl~~id  283 (370)
T COG5276         206 LIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD-G-AKGLPIID  283 (370)
T ss_pred             EEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-c-ccCceeEe
Confidence            334444555899999999988888 77788888887665444442  1223332223444555555542 2 22333332


Q ss_pred             ecCc--ceee-eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          245 HYAS--KRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       245 ~~~~--~~~~-~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      ..+.  ..+. .+......-..+..  -+.++..+..+ . ..+-|...-+......+  ....+.+.+.+-+.+.+.+.
T Consensus       284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~  357 (370)
T COG5276         284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYST  357 (370)
T ss_pred             ccCCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEe
Confidence            2211  1111 11111112223332  23444444444 2 44555443332222222  12234444445556677888


Q ss_pred             eCCCeEEEEEcc
Q 017642          322 SDKGTVHVFNLK  333 (368)
Q Consensus       322 s~dg~i~iwd~~  333 (368)
                      ..++.+.||+..
T Consensus       358 d~~~gl~i~~~~  369 (370)
T COG5276         358 DYNGGLSIIEYL  369 (370)
T ss_pred             ecCCCEEEEEec
Confidence            888999999863

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=93.52  E-value=2.3  Score=37.99  Aligned_cols=168  Identities=17%  Similarity=0.200  Sum_probs=89.7

Q ss_pred             CcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      +.|.++| +....+..+.   ....|.++.|..|-.+++   .-.-+.+.|+.+.+..+.+....-+-.+--++|-|+..
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~  484 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR  484 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence            3566666 4555666655   577899999999888887   34568888987655444332222222334568888887


Q ss_pred             EEEeecCCCCeEEE--EecCc----ceeeee--eccCc----ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          230 VLVCPGLQKGQVRV--EHYAS----KRTKFI--MAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       230 ~l~~~g~~dg~i~i--~~~~~----~~~~~~--~~~~~----~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ++.. |-.+|.+++  ++...    +.+..+  ...-.    .-.+..|.|...+++.-...+.  .|+-++.|..+..-
T Consensus       485 ~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~kl~k~  561 (603)
T COG4880         485 LLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSKLRKR  561 (603)
T ss_pred             EEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCceeeeh
Confidence            8776 778899888  44332    111111  10000    1123445555554333333333  35656666433222


Q ss_pred             EeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      ..  |+..+...-|-.|  +|...+.. .+.++|-
T Consensus       562 ~e--~k~na~RA~fi~d--ylY~vg~~-ev~~lde  591 (603)
T COG4880         562 AE--RKLNADRAFFIKD--YLYLVGGN-EVWKLDE  591 (603)
T ss_pred             hh--hcccceeeEEecc--eEEEeccc-eeEEecc
Confidence            12  4555555556555  44433322 3444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.38  E-value=0.63  Score=38.38  Aligned_cols=65  Identities=12%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE---------------ecCCceeEEEEeeCccEEE--eCC
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL---------------SFRSEVRSVKLRRDRIIVV--LEQ  194 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~--~d~  194 (368)
                      +..+....+.+.+++..       |.+++||+.+++.+..-               .....|..+.++.+|.-++  .+|
T Consensus        15 ~~~l~~~~~~Ll~iT~~-------G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng   87 (219)
T PF07569_consen   15 VSFLECNGSYLLAITSS-------GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG   87 (219)
T ss_pred             eEEEEeCCCEEEEEeCC-------CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            34455556665555544       99999999998765432               1335678888888887766  688


Q ss_pred             cEEEEEcCC
Q 017642          195 KIFVYNFAD  203 (368)
Q Consensus       195 ~i~vwd~~~  203 (368)
                      ..+.|+..-
T Consensus        88 ~~y~y~~~L   96 (219)
T PF07569_consen   88 DSYSYSPDL   96 (219)
T ss_pred             CEEEecccc
Confidence            888888643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=93.34  E-value=8  Score=37.24  Aligned_cols=160  Identities=18%  Similarity=0.225  Sum_probs=79.9

Q ss_pred             EEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE--EEEec-cCCCeeEEEEec-----CCCeEEEEeecCCCC
Q 017642          171 ELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL--HQIET-IANPKGLCAVSQ-----GVGSLVLVCPGLQKG  239 (368)
Q Consensus       171 ~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~--~~~~~-~~~~v~~~~~~~-----~~~~~~l~~~g~~dg  239 (368)
                      +++..+.|.++.+..++..++   .+|.|.+||...+...  ..+.. +...+.--.|-.     +++.++++.+.-.+.
T Consensus       125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~  204 (670)
T PF10395_consen  125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS  204 (670)
T ss_pred             EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence            445788999999998777665   6999999999333221  12211 111111001211     233333333231222


Q ss_pred             --eEEEEec--Ccceeeeee---ccCcceE--EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--Cc--ccE
Q 017642          240 --QVRVEHY--ASKRTKFIM---AHDSRIA--CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DR--AEI  306 (368)
Q Consensus       240 --~i~i~~~--~~~~~~~~~---~~~~~i~--~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~~--~~v  306 (368)
                        ..++...  ....+..+.   .+.....  .+++. +|++..-  .++. |.+|++...+..+++....  ..  ..+
T Consensus       205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~-i~~ysip~f~~~~tI~l~~ii~~~~~~~  280 (670)
T PF10395_consen  205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKT-ISSYSIPNFQIQKTISLPSIIDKESDDL  280 (670)
T ss_pred             cEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCE-EEEEEcCCceEEEEEEechhhccccccc
Confidence              3334444  233333332   1111222  23333 5653333  5667 9999999888777665420  01  123


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .++.--...+.|++  .+++|++.|+.-..
T Consensus       281 vSl~~~s~nRvLLs--~~nkIyLld~~~~s  308 (670)
T PF10395_consen  281 VSLKPPSPNRVLLS--VNNKIYLLDLKFES  308 (670)
T ss_pred             eEeecCCCCeEEEE--cCCEEEEEeehhhh
Confidence            34332122344443  46789999986543

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.28  E-value=5.1  Score=34.81  Aligned_cols=149  Identities=13%  Similarity=0.147  Sum_probs=75.5

Q ss_pred             cCCceeEEEEeeCccEEE--eCCcE-EEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe--cCc
Q 017642          174 FRSEVRSVKLRRDRIIVV--LEQKI-FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH--YAS  248 (368)
Q Consensus       174 ~~~~v~~~~~~~~~~~l~--~d~~i-~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~--~~~  248 (368)
                      ..+.+..+..++||++++  ..|.+ .-||--...-...-......+..+.|.+++.- .++.   ..|.|+.-+  ...
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~l-w~~~---~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNL-WMLA---RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-E-EEEE---TTTEEEEEE-TTEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCE-EEEe---CCcEEEEccCCCCc
Confidence            557788888999999988  45554 46664211111112234568899999999753 4433   578888833  111


Q ss_pred             cee----eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCCEEEEEeC
Q 017642          249 KRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       249 ~~~----~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      ..-    ..+....-.+..++|.+++...++|+. |.  .+.....|+.-+..+.. .-.+.++.|.|..+.+-++. +.
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~--l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~  294 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT--LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ  294 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred             cccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc--EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence            111    112223335889999998877776554 44  45555667766554431 12456889999876665655 47


Q ss_pred             CCeEEEE
Q 017642          324 KGTVHVF  330 (368)
Q Consensus       324 dg~i~iw  330 (368)
                      +|.|.-|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            8877655

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=5.2  Score=34.13  Aligned_cols=193  Identities=8%  Similarity=0.072  Sum_probs=107.2

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE-eCCcEEEEEcCC
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD  203 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~  203 (368)
                      .+..+.++.++.+..+++-.+       .-+++.|+.+...-..+.   ..+--.++..+.+-.+++ .|..+.+.|+.+
T Consensus        85 ~~~l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             hhhhhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCC
Confidence            344556677777777777654       569999998765433333   335566666666666666 477788888865


Q ss_pred             Ce---EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc---CcceEEEEECCCCCEEEEEe
Q 017642          204 LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       204 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~---~~~i~~v~~sp~g~~l~s~~  277 (368)
                      .+   ..-........-..+++  .|++-++++   .|+-+.+-+.....--.+.+|   ...+.++..+++..+++...
T Consensus       158 pssP~lagrya~~~~d~~~v~I--SGn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAI--SGNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEE--ecCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence            43   22233333332233444  355545554   566666644333222223322   23678888887765665544


Q ss_pred             CCCcEEEEEECCCCceeEeeEeccCcccEEEE-EEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l-~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      + |  +.+-|..+.+....+-.. ....+.++ .+.-.+++...+..+.-+.+-|++++.
T Consensus       233 e-g--vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         233 E-G--VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             c-c--eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence            3 3  778887665544333221 22223232 233335566666556667777776554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.00  E-value=4.2  Score=33.04  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=38.3

Q ss_pred             EEEEeC-CeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEEEecCCceeEEEEeeCccEEE
Q 017642          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELSFRSEVRSVKLRRDRIIVV  191 (368)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~  191 (368)
                      .+.-.+ +.+++++++       +.|.+|++.  ..+....|..-+.|..+.++..|.+++
T Consensus        22 ~~c~~g~d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv   75 (215)
T PF14761_consen   22 AVCCGGPDALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV   75 (215)
T ss_pred             eeeccCCceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence            333445 556665544       789999988  345667777778999999999999998

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.95  E-value=8.1  Score=36.22  Aligned_cols=135  Identities=10%  Similarity=0.028  Sum_probs=62.1

Q ss_pred             CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcc---eEEEEECCCC
Q 017642          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR---IACFALTQDG  270 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~---i~~v~~sp~g  270 (368)
                      +.+.++|. +|..+..+.........+...++|..  ++..   ...++..+..++.+.........   =..+..-|+|
T Consensus       128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~l--l~~~---~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNL--LIGS---GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-E--EEEE---BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             ceEEEECC-CccEEEEEccCccccceeeEcCCCCE--EEec---CCceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence            45666664 46665555433332222556677763  3322   25666666666655543322211   2346677889


Q ss_pred             CEEEEEeC-------------CCcEEEEEECCCCceeEeeEecc-------------------------CcccEEEEEEe
Q 017642          271 QLLATSST-------------KGTLVRIFNTLDGTLLQEVRRGA-------------------------DRAEIYSLAFS  312 (368)
Q Consensus       271 ~~l~s~~~-------------dg~~i~iwd~~~~~~~~~~~~~~-------------------------~~~~v~~l~~s  312 (368)
                      ++|+.+..             ... |..+| .+|+.+..+....                         +-..++++.+.
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            88887771             112 44555 5555554433211                         11258899999


Q ss_pred             c-CCCEEEEEeCCCeEEEEEccCCC
Q 017642          313 S-NAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       313 p-~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      + ++.+|+++-.-..|...|.++++
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~  304 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGK  304 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCc
Confidence            8 56666666555577777755554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.80  E-value=9.5  Score=36.64  Aligned_cols=175  Identities=14%  Similarity=0.152  Sum_probs=89.1

Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE--eC------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LE------QKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~--~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  225 (368)
                      ..+..+|..+++....-.  ......+++...+..+++  .|      ..+..||.++.+=.. +..-...-.......-
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL  379 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE
Confidence            578899988875443333  444455666666655555  34      367888887665222 1111111122233333


Q ss_pred             CCeEEEEeecCCCCeEEE-----EecCcceeeeeecc---CcceEEEEECCCCCEEEEEeCCCcE-----EEEEECCCCc
Q 017642          226 VGSLVLVCPGLQKGQVRV-----EHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTKGTL-----VRIFNTLDGT  292 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i-----~~~~~~~~~~~~~~---~~~i~~v~~sp~g~~l~s~~~dg~~-----i~iwd~~~~~  292 (368)
                      +..+ .+. |+.||.-.+     |+.....-......   ......+.+  +|++.++|+.++..     +..||..+++
T Consensus       380 ~g~i-Yav-GG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  380 DGKL-YAV-GGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCEE-EEE-eccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            3333 343 556765443     44333222222111   122222333  78888888866531     6788877655


Q ss_pred             eeE--eeEeccCcccEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCC
Q 017642          293 LLQ--EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNSGSA  339 (368)
Q Consensus       293 ~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~  339 (368)
                      -..  .+..  ... -..++. -++.+.+.||.|+     +|..||..+.+-..
T Consensus       456 W~~~~~M~~--~R~-~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  456 WTLIAPMNT--RRS-GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             eeecCCccc--ccc-cceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            332  2221  111 112332 3577778887765     37778877765443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.77  E-value=7.4  Score=35.33  Aligned_cols=139  Identities=10%  Similarity=0.001  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642           89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        89 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      +.+-|....+.|.+...+++.=|.+..........+.......+.++.|+++..+++.--.+     ++|.+++....+.
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDNS  100 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCch
Confidence            34455555666666667778778776555433344433566689999999999999988777     9999999754433


Q ss_pred             EEEE----e-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          169 IGEL----S-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       169 ~~~~----~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      ...+    + ....|.+..|+.+..+.+ .+..+.+|.+... +.++.++.+.-.|.-..|+++.+-.+++
T Consensus       101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            3332    2 344588999988755444 7888888877443 3455556677778888888887754444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.57  E-value=10  Score=36.43  Aligned_cols=235  Identities=14%  Similarity=0.104  Sum_probs=109.8

Q ss_pred             CCCCEEEEEe-CC------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        95 ~~g~~l~~~~-d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      ..+.+++.|+ .+      .+..||..+........+  .......+++...+.+++++|.+.....-..+..||..+++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC--CcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3456667777 43      277888766544333333  22233445555566555555443123333678899988776


Q ss_pred             EEEEEe--cCCceeEEEEeeCccEEE---eC-----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          168 CIGELS--FRSEVRSVKLRRDRIIVV---LE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       168 ~~~~~~--~~~~v~~~~~~~~~~~l~---~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      ....-.  ....-.+++.. +|.+.+   .|     ..|..||.++.+-...- .............-+..+++ + |+.
T Consensus       361 W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi-~-GG~  436 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYI-I-GGG  436 (571)
T ss_pred             eeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEE-E-cCc
Confidence            443222  11111222222 344333   23     25778887654321111 11112222333333334343 3 444


Q ss_pred             CCeE------EEEecCcce---eeeeeccCcceEEEEECCCCCEEEEEeCCCc----EEEEEECCCCceeEeeEeccCcc
Q 017642          238 KGQV------RVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       238 dg~i------~i~~~~~~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      ++.-      ..++.....   +..+..-........+  ++.+++.|+.|+.    .|..||..+.+-...-.......
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS  514 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence            4433      224333322   1122211112222222  6778888887761    16778887765443211110111


Q ss_pred             cEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNSGSA  339 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~  339 (368)
                      .+..+.  -+++..++|+.||     +|..||..+.+-..
T Consensus       515 ~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  515 AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             cccEEE--ECCEEEEEecccCccccceeEEcCCCCCceee
Confidence            222222  3566777888776     57778776665443

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=92.36  E-value=11  Score=36.15  Aligned_cols=240  Identities=14%  Similarity=0.066  Sum_probs=114.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCe------EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           87 TLLHISFNQDHGCFAAGTDHG------FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      .+-.++.+||+++||.+-|..      +++.|+.+++.... .+  ..  ....++|.+++..+.-...|......+|..
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d-~i--~~--~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~  204 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD-EI--TN--TSGSFAWAADGKTLFYTRLDENHRPDKVWR  204 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch-hh--cc--cccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence            456678899999998876321      88888887665422 11  11  233445555433333222221111223333


Q ss_pred             EeCCC--CcEEEEEec--CCceeEEEEeeCccEEE------eCCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeE
Q 017642          161 WDDHQ--SRCIGELSF--RSEVRSVKLRRDRIIVV------LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       161 wd~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~------~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      -.+.+  ..-...+..  ..-...+.-+.+..+++      ....+++.+........ .+......+. ......++.+
T Consensus       205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e-Y~~eh~~d~f  283 (682)
T COG1770         205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE-YSVEHGGDRF  283 (682)
T ss_pred             EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE-EeeeecCcEE
Confidence            33333  222223332  22333444455566665      23578888876543321 2211111111 2223335555


Q ss_pred             EEEeecCCCC-eEEEEecCc----ceeeeeeccCcceEEEEECCCCCEEEEEeCCC---cEEEEEECCCCceeEeeEecc
Q 017642          230 VLVCPGLQKG-QVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       230 ~l~~~g~~dg-~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg---~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      ++.+ . .+| ..+|.....    ..-+.+..|...+.--.|+--..+|+....++   . |++++..+++... +.-. 
T Consensus       284 ~i~s-N-~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~-v~v~~~~~~~~~~-i~f~-  358 (682)
T COG1770         284 YILS-N-ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPR-VVVRDRKTGEERG-IAFD-  358 (682)
T ss_pred             EEEe-c-CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCce-EEEEecCCCceee-EEec-
Confidence            5543 2 333 444422221    22334556776666556665666666665543   4 8888887766543 3321 


Q ss_pred             CcccEEEEEEecC--CCEE-E-EEe--CCCeEEEEEccCCCC
Q 017642          302 DRAEIYSLAFSSN--AQWL-A-VSS--DKGTVHVFNLKVNSG  337 (368)
Q Consensus       302 ~~~~v~~l~~sp~--~~~l-~-s~s--~dg~i~iwd~~~~~~  337 (368)
                      .......+..+++  ...| + ..|  .-.++.=+|+.+++.
T Consensus       359 ~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er  400 (682)
T COG1770         359 DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGER  400 (682)
T ss_pred             chhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcE
Confidence            2233344444432  2222 2 222  345677777777654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.36  E-value=6.8  Score=33.88  Aligned_cols=164  Identities=13%  Similarity=0.056  Sum_probs=88.9

Q ss_pred             CcEEEEeCCCCcEEEEEec-------CCceeEEEEeeCc-----cEEE----eCCcEEEEEcCCCeEEEEEeccCC----
Q 017642          156 NKVMIWDDHQSRCIGELSF-------RSEVRSVKLRRDR-----IIVV----LEQKIFVYNFADLKLLHQIETIAN----  215 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-----~~l~----~d~~i~vwd~~~~~~~~~~~~~~~----  215 (368)
                      -+|.+||+.+++.++++..       .+.+..+.+....     .++.    ..+.|.|+|+.+++..+.+..+..    
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            4799999999999888862       3456777777632     2222    346899999999876655532211    


Q ss_pred             ---------------CeeEEEEec---CCCeEEEEeecCCCCeEEE---EecCc---------ceeeeeeccCcceEEEE
Q 017642          216 ---------------PKGLCAVSQ---GVGSLVLVCPGLQKGQVRV---EHYAS---------KRTKFIMAHDSRIACFA  265 (368)
Q Consensus       216 ---------------~v~~~~~~~---~~~~~~l~~~g~~dg~i~i---~~~~~---------~~~~~~~~~~~~i~~v~  265 (368)
                                     .+..++.++   +++.+++.. -+.....+|   ...+.         ..++.+.........++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~-lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP-LSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE-TT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEe-CCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                           123344433   443433322 111112222   11111         01112211123556788


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCC---ceeEeeEeccC-cccEEEEEEec--CCCEEEEE
Q 017642          266 LTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGAD-RAEIYSLAFSS--NAQWLAVS  321 (368)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~~-~~~v~~l~~sp--~~~~l~s~  321 (368)
                      ++++|.++++--..+. |..|+..+.   +....+..... -..+.++.+.+  +|.+.+..
T Consensus       193 ~D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ECCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8999988888888888 999998751   12222322212 34778999988  77765544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.27  E-value=8.3  Score=34.72  Aligned_cols=148  Identities=11%  Similarity=0.023  Sum_probs=74.1

Q ss_pred             eEEEEEEeCCeEEEEecCCCCC------CCCC-cEEEEeCCC--Cc--EEEEEe-cCCceeEEEEeeCccEEEeCCcEEE
Q 017642          131 GVVEMLFRCNILALVGGGPDPQ------YPLN-KVMIWDDHQ--SR--CIGELS-FRSEVRSVKLRRDRIIVVLEQKIFV  198 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~d~~------~~~~-~i~vwd~~~--~~--~~~~~~-~~~~v~~~~~~~~~~~l~~d~~i~v  198 (368)
                      ....+++++++.++++...+-.      -..+ .|.+++-.+  |+  ....+. .-.....+++.+++.+++....|..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~   94 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF   94 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence            3456777777766665321000      0012 677776442  33  223333 3345688999999944444455554


Q ss_pred             E-EcCC-C----eEEEE---Eecc----CCCeeEEEEecCCCeEEEEeecCCC------------------CeEEEEecC
Q 017642          199 Y-NFAD-L----KLLHQ---IETI----ANPKGLCAVSQGVGSLVLVCPGLQK------------------GQVRVEHYA  247 (368)
Q Consensus       199 w-d~~~-~----~~~~~---~~~~----~~~v~~~~~~~~~~~~~l~~~g~~d------------------g~i~i~~~~  247 (368)
                      | |... +    +....   +...    ......+.|.+||. +++.. |+..                  |.|.-.+.+
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH-GNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec-ccCCCceeccCCCccCcccccCceEEEEecC
Confidence            4 4321 1    21112   2211    22355788999985 45443 4211                  222223333


Q ss_pred             cceeeeeeccCcceEEEEECCCCCEEEEEeCCC
Q 017642          248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKG  280 (368)
Q Consensus       248 ~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg  280 (368)
                      +.....+...-.....++|+++|+++++-..++
T Consensus       173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence            333333322223356899999999877655443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.02  E-value=0.022  Score=51.01  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=86.4

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCC
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD  203 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~  203 (368)
                      +-+..+...|.+++.-++.++.+     ..+..|| +.++...+...++....++|..++..++    ..+.+++||+.+
T Consensus        33 alv~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             hccccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence            34445555665544434444433     6788888 6677777777788888999999887665    578999999965


Q ss_pred             CeEEEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEE
Q 017642          204 LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLL  273 (368)
Q Consensus       204 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l  273 (368)
                      ... +.++ +....-.-..|++....+.+   |...|.+.|+.... +.+.....|...++++++.+.+..+
T Consensus       107 eyt-qqLE~gg~~s~sll~wsKg~~el~i---g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  107 EYT-QQLESGGTSSKSLLAWSKGTPELVI---GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             hhH-HHHhccCcchHHHHhhccCCccccc---cccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            432 2221 12222223567777665333   55778888855444 3333444488899999999876533

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.94  E-value=11  Score=35.36  Aligned_cols=152  Identities=12%  Similarity=0.076  Sum_probs=74.3

Q ss_pred             CCeEEEEec---CCCCCCCCCcEEEEeCCCCcEEEEEec-CCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEecc
Q 017642          139 CNILALVGG---GPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI  213 (368)
Q Consensus       139 ~~~~~~~s~---~~d~~~~~~~i~vwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~  213 (368)
                      .+++.++..   ...     ....++| ..|..+..+.. ......+...++|.+++ ....++.+|+ .|+.+......
T Consensus       113 ~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l~  185 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDLP  185 (477)
T ss_dssp             TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE--
T ss_pred             CCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcC-CCCEEEeeecC
Confidence            456666666   222     5677888 66777666652 22222267788999888 6788888887 46666655433


Q ss_pred             CCC---eeEEEEecCCCeEEEEee------c-----CCCCeEEEEecCcceeeeee--cc--------------------
Q 017642          214 ANP---KGLCAVSQGVGSLVLVCP------G-----LQKGQVRVEHYASKRTKFIM--AH--------------------  257 (368)
Q Consensus       214 ~~~---v~~~~~~~~~~~~~l~~~------g-----~~dg~i~i~~~~~~~~~~~~--~~--------------------  257 (368)
                      ...   -..+..-++|+.++++..      +     -.|..+.|+ .+++.+..+.  .|                    
T Consensus       186 ~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~  264 (477)
T PF05935_consen  186 GGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS  264 (477)
T ss_dssp             TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred             CcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccC
Confidence            322   234667788876665541      0     023333333 4443333211  00                    


Q ss_pred             -----CcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          258 -----DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       258 -----~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                           ---++++.+.+ ++.+|+++-.-.. |...|.++++....+-.
T Consensus       265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~  311 (477)
T PF05935_consen  265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGP  311 (477)
T ss_dssp             STTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-
T ss_pred             CCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCC
Confidence                 01378999988 4445555544446 88888888877665543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.74  E-value=6.3  Score=35.90  Aligned_cols=38  Identities=5%  Similarity=-0.107  Sum_probs=28.2

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeC-CeEEEEEecCCCcc
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREI  119 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~d-~~i~iw~~~~~~~~  119 (368)
                      ......+.+++.+|++++.|+.+. +.|.++|+......
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv  342 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV  342 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence            344567899999999998887663 33999998765443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.65  E-value=8.1  Score=33.25  Aligned_cols=220  Identities=13%  Similarity=0.138  Sum_probs=116.8

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecC-----CCcceEEEccc----CCceeEEEEEEeCCeEE------------E
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDP-----FREIFRRDFER----GGGIGVVEMLFRCNILA------------L  144 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------------~  144 (368)
                      .-+.|+|+|.+.+-++.. -+...+||.+.     ....+...+..    ........+.|+...-+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            457899999887655555 55599999872     12222333320    01223445555532222            2


Q ss_pred             EecCCCCCCCCCcEEEEeCCCCcE-----EEEEe--cCCce-eEEEEeeC--ccEEE----eCCcEEEEEcCCCeEEEEE
Q 017642          145 VGGGPDPQYPLNKVMIWDDHQSRC-----IGELS--FRSEV-RSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       145 ~s~~~d~~~~~~~i~vwd~~~~~~-----~~~~~--~~~~v-~~~~~~~~--~~~l~----~d~~i~vwd~~~~~~~~~~  210 (368)
                      +-+.+|     |+|.-|...-+..     ...+.  ..+.| +.+++...  +.+|.    ..++|.|||-. .+++..-
T Consensus       104 if~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~  177 (336)
T TIGR03118       104 LFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP  177 (336)
T ss_pred             EEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence            333444     8999998432221     12222  12333 45555532  33333    57899999853 2222110


Q ss_pred             eccCCCeeEEEEec-----CCCeEEEEe-----------ecCCCCeEEEEecCcceeeeeec--cCcceEEEEECC----
Q 017642          211 ETIANPKGLCAVSQ-----GVGSLVLVC-----------PGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQ----  268 (368)
Q Consensus       211 ~~~~~~v~~~~~~~-----~~~~~~l~~-----------~g~~dg~i~i~~~~~~~~~~~~~--~~~~i~~v~~sp----  268 (368)
                      ....++---.-+.|     -+..+++.+           .|..-|.|.+++.++..++++..  .-...+.|+..|    
T Consensus       178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhC
Confidence            00001100000111     112222222           13345788888888888887742  233456777765    


Q ss_pred             --CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC----cccEEEEEEec
Q 017642          269 --DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSS  313 (368)
Q Consensus       269 --~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~----~~~v~~l~~sp  313 (368)
                        .|.+|+---.||+ |..||..+++.+-.+.....    -..++.|.|..
T Consensus       258 ~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       258 SLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEEeecCCce-eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              4567776667999 99999999988877765311    12467788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.59  E-value=0.18  Score=48.84  Aligned_cols=104  Identities=9%  Similarity=0.057  Sum_probs=54.2

Q ss_pred             ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcc-------cCCceeEEEEEEeCCeEEEEecCC
Q 017642           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-------RGGGIGVVEMLFRCNILALVGGGP  149 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~  149 (368)
                      .+..+.++.|..+.|-. +...+.  . -+.+.||+++-.+..+...+.       ......|..+-|-.+...++.+..
T Consensus       126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence            34556677888888842 222222  2 244788998754332221111       011122222233455566666666


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEE
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIV  190 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  190 (368)
                      +     ++|++.++++... ..+. |...+..+++-..|...
T Consensus       204 ~-----~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~  239 (1283)
T KOG1916|consen  204 G-----GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLK  239 (1283)
T ss_pred             C-----CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhh
Confidence            5     8888877655433 1222 77777777766655443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.54  E-value=3  Score=37.75  Aligned_cols=106  Identities=10%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEccc-CCceeEEEEEEeCCe-EEEEecCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCNI-LALVGGGPDPQYP  154 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~d~~~~  154 (368)
                      .+.-....++|.++.||+|.+.||+-. ++.|.+++....+.......++ .....+..+.|..+. +++++.       
T Consensus        59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~-------  131 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD-------  131 (657)
T ss_pred             ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec-------
Confidence            334445667999999999999999988 8889999985544332211111 344558888887654 344443       


Q ss_pred             CCcEEEEeCCCC-cEEEEEe-cCCceeEEEEeeCccEEE
Q 017642          155 LNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVV  191 (368)
Q Consensus       155 ~~~i~vwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~  191 (368)
                       ..+.+|-+... ..++..+ +.-.|.-..|.++...+.
T Consensus       132 -~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  132 -QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             -CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence             33556654433 2233334 677788888888776655

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.26  E-value=10  Score=33.63  Aligned_cols=101  Identities=17%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             ceeEEEEeeCccEEE--eCCcEEEEEcCCCeE---EEEEe----ccCCCeeEEEEecC---CCeEEEEeecC----CCCe
Q 017642          177 EVRSVKLRRDRIIVV--LEQKIFVYNFADLKL---LHQIE----TIANPKGLCAVSQG---VGSLVLVCPGL----QKGQ  240 (368)
Q Consensus       177 ~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~---~~~~~----~~~~~v~~~~~~~~---~~~~~l~~~g~----~dg~  240 (368)
                      ..+.|+|.|||++++  ..|.|++++ .++..   +..+.    ........++++|+   ...++++.+..    ....
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            457899999999888  578999999 45544   22221    12345567899984   45666665411    1122


Q ss_pred             EEE--EecCcc--------ee-eeeec---cCcceEEEEECCCCCEEEEEeC
Q 017642          241 VRV--EHYASK--------RT-KFIMA---HDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       241 i~i--~~~~~~--------~~-~~~~~---~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                      .+|  +.....        .+ ..+..   ....-..|.|.|||.++++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            222  222211        11 11122   2334567999999986555543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.01  E-value=1.6  Score=24.68  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=24.4

Q ss_pred             CCCCEEEEEeC-CCcEEEEEECCCCceeEeeEec
Q 017642          268 QDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       268 p~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                      |++++|+++.. ++. |.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence            57776666654 556 999999999888887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.00  E-value=13  Score=34.29  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=25.5

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ..|.++...+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999889999999999999999976

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.80  E-value=10  Score=32.83  Aligned_cols=153  Identities=12%  Similarity=0.157  Sum_probs=82.8

Q ss_pred             eeEEEEeeCccEEEe---------------CCcEEEEEcCCCeEEEEEecc------CCCeeEEEEecCCC----eEEEE
Q 017642          178 VRSVKLRRDRIIVVL---------------EQKIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVG----SLVLV  232 (368)
Q Consensus       178 v~~~~~~~~~~~l~~---------------d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~~~l~  232 (368)
                      |..+...+++++.+.               .-+|.+||+++.+.++++.-.      ......+.+.....    ..+.+
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            556666666665551               127889999999988877533      22345566655221    33333


Q ss_pred             eecCCCCeEEEEe-cCcceeeeeec-------------------cCcceEEEEECC---CCCEEEEEeCCCcEEEEEECC
Q 017642          233 CPGLQKGQVRVEH-YASKRTKFIMA-------------------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       233 ~~g~~dg~i~i~~-~~~~~~~~~~~-------------------~~~~i~~v~~sp---~g~~l~s~~~dg~~i~iwd~~  289 (368)
                      +-.+ .+-|.|++ .+++..+.+..                   ....+..++.+|   +|+.|+.....+.  ++|.+.
T Consensus        83 tD~~-~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~  159 (287)
T PF03022_consen   83 TDSG-GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVP  159 (287)
T ss_dssp             EETT-TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEE
T ss_pred             eCCC-cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEE
Confidence            3232 33444433 33322211111                   122366777765   7777887777664  566553


Q ss_pred             CC--------------ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          290 DG--------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       290 ~~--------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +.              +.+..+ +. .......++++++|.++++--..+.|..|+..++
T Consensus       160 T~~L~~~~~~~~~~~~~~v~~l-G~-k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  160 TSVLRDPSLSDAQALASQVQDL-GD-KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             HHHHCSTT--HHH-HHHT-EEE-EE----SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             HHHhhCccccccccccccceec-cc-cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence            21              111122 11 1235567889999998888888999999998763

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.69  E-value=2.9  Score=33.07  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=25.4

Q ss_pred             cceEEEEECCCC------CEEEEEeCCCcEEEEEECCC
Q 017642          259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       259 ~~i~~v~~sp~g------~~l~s~~~dg~~i~iwd~~~  290 (368)
                      ..+..++|||-|      -+|++.+.++. |.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence            378999999954      28999999999 99998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.66  E-value=2.8  Score=42.22  Aligned_cols=116  Identities=12%  Similarity=-0.005  Sum_probs=71.9

Q ss_pred             CcEEEEeCCCCcEEE-----EEe-------cCCceeEEEEeeCc---cEEE-eCCcEEEEEcCCCe-EEEEEeccCCCee
Q 017642          156 NKVMIWDDHQSRCIG-----ELS-------FRSEVRSVKLRRDR---IIVV-LEQKIFVYNFADLK-LLHQIETIANPKG  218 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~-----~~~-------~~~~v~~~~~~~~~---~~l~-~d~~i~vwd~~~~~-~~~~~~~~~~~v~  218 (368)
                      -.|..||+++-....     -+.       ......++.|+|.-   ..+. .|+.|++..+.... ....+ ......+
T Consensus       124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~T  202 (1405)
T KOG3630|consen  124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQT  202 (1405)
T ss_pred             ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cccccee
Confidence            578899987532111     111       23345677788742   2222 68888888774322 22222 2345678


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec----cCcceEEEEECCCCCEEEE
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA----HDSRIACFALTQDGQLLAT  275 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~----~~~~i~~v~~sp~g~~l~s  275 (368)
                      +++|+|.|+.+++   |...|++.-+.........+..    ....|.+|.|-....+|++
T Consensus       203 av~WSprGKQl~i---G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  203 AVLWSPRGKQLFI---GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eEEeccccceeeE---ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            9999999998554   6678888777777665554432    1367999999876665554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.97  E-value=1.7  Score=41.50  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             cEEEEEEec----CCCEEEEEeCCCeEEEEEccCCCC
Q 017642          305 EIYSLAFSS----NAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       305 ~v~~l~~sp----~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ....++++.    +..+|++.+.|++||+||+.+++.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            455566665    678999999999999999999987

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=89.53  E-value=19  Score=34.11  Aligned_cols=188  Identities=15%  Similarity=0.175  Sum_probs=106.3

Q ss_pred             eCCeEEEEecCCC-----CCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE
Q 017642          138 RCNILALVGGGPD-----PQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL  206 (368)
Q Consensus       138 ~~~~~~~~s~~~d-----~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~  206 (368)
                      ..+.+.+++...+     ..-..+.|.+.| .+.+.+..+.   ..+.|.+++|-.+.-+++   .=.-+++.|+.+.+.
T Consensus       281 ~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~  359 (521)
T PF09826_consen  281 YDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPAN  359 (521)
T ss_pred             cCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCC
Confidence            3455666654421     112336788888 7777777776   577899999999999988   234688999977544


Q ss_pred             EEEEeccCCCeeEEEEecCCCeEEEEeecCCC-Ce--------EEE--EecCc----ceeeeee-cc-------CcceEE
Q 017642          207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQ--------VRV--EHYAS----KRTKFIM-AH-------DSRIAC  263 (368)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d-g~--------i~i--~~~~~----~~~~~~~-~~-------~~~i~~  263 (368)
                      .+.+..-.-+-.+--++|-++..+|.. |-.. ..        ++|  ++.+.    +.+.... +.       ...-.+
T Consensus       360 P~vlGeLKIPGfS~YLHP~~e~~LlGi-G~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkA  438 (521)
T PF09826_consen  360 PKVLGELKIPGFSDYLHPYDENHLLGI-GKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKA  438 (521)
T ss_pred             CceeeEEECccchhceeECCCCeEEEE-cccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceE
Confidence            333321111222334677666666665 4333 22        555  54432    1121111 00       012346


Q ss_pred             EEECCCCCEEEEEeC--------CCcEEEEEECCCCc---eeEeeEeccCcc-------cEEEEEEecCCCEEEEEeCCC
Q 017642          264 FALTQDGQLLATSST--------KGTLVRIFNTLDGT---LLQEVRRGADRA-------EIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       264 v~~sp~g~~l~s~~~--------dg~~i~iwd~~~~~---~~~~~~~~~~~~-------~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      +.|++..++|+.--.        .|  +.|+++...+   ....+.   |..       .+....+.  +..|.+.+ ++
T Consensus       439 fl~~~~~~ll~~Pv~~~~~~~~~~g--~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~  510 (521)
T PF09826_consen  439 FLFDKEKNLLAFPVSSSYGYFNFQG--AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVS-DN  510 (521)
T ss_pred             EEEeCCCCEEEEEEEEccCccccce--EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEE-CC
Confidence            778887776654332        33  7888877222   222222   333       25665555  34677776 45


Q ss_pred             eEEEEEccCC
Q 017642          326 TVHVFNLKVN  335 (368)
Q Consensus       326 ~i~iwd~~~~  335 (368)
                      .|+++|+++-
T Consensus       511 ~i~~~~l~t~  520 (521)
T PF09826_consen  511 GIKAYDLNTL  520 (521)
T ss_pred             EEEEEehHhc
Confidence            6999999864

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.34  E-value=10  Score=39.07  Aligned_cols=73  Identities=8%  Similarity=0.025  Sum_probs=44.8

Q ss_pred             ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      -+..++.+..+......+ .+...+. +-+|+.........+...       ...++.++..++++..||.+.+||+..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  196 LIEYESLQVLYYSPTKIL-IGFNRGL-VVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             ccccccceeeeecCCCcc-eeeeeee-eeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCCC
Confidence            344555665555444433 3344455 667765444433333321       1112888999999999999999999987


Q ss_pred             CC
Q 017642          336 SG  337 (368)
Q Consensus       336 ~~  337 (368)
                      +.
T Consensus       267 ~~  268 (993)
T KOG1983|consen  267 KL  268 (993)
T ss_pred             ce
Confidence            54

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=89.27  E-value=27  Score=35.43  Aligned_cols=170  Identities=14%  Similarity=0.168  Sum_probs=99.0

Q ss_pred             cEEEEeCCCCcEEEEEecCC-----ceeEEEEeeCccE--EE--------------eCCcEEEEEc-CCCeEEEEEeccC
Q 017642          157 KVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRII--VV--------------LEQKIFVYNF-ADLKLLHQIETIA  214 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~--l~--------------~d~~i~vwd~-~~~~~~~~~~~~~  214 (368)
                      .|+++|..+++.+..+.+..     .+..+.|+.....  ++              .+|.++.|++ +.|+.+.-+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            58999988888887776433     3555666653322  22              2566888887 4555444443222


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee---eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC-C
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D  290 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~---~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~  290 (368)
                      -+-...++.|..+.+ ++.   ....+++++...+.+..   ++.-...|..+.+  .+..+++|..... +.++-.+ .
T Consensus       934 ~~~~v~Ai~~f~~~~-Lag---vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~ 1006 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRV-LAG---VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE 1006 (1205)
T ss_pred             CCccceEEeccCCEE-EEe---cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC
Confidence            233346777877753 332   35788887776644322   2223456777776  5667777766555 5544333 3


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +..+..+....-...|+++.+- |...+|.+..=|.+.+-.+..
T Consensus      1007 ~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            4445566554334467777665 455677776667777766643

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.23  E-value=3.5  Score=32.58  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=25.0

Q ss_pred             cEEEEEEecCC------CEEEEEeCCCeEEEEEccC
Q 017642          305 EIYSLAFSSNA------QWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       305 ~v~~l~~sp~~------~~l~s~s~dg~i~iwd~~~  334 (368)
                      .+.+++|||-|      .+|++.+.++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999954      3788889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.94  E-value=6  Score=36.57  Aligned_cols=77  Identities=14%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEEC----------CCCceeEeeE---------eccCcccEEEEEEecCC---CE
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNT----------LDGTLLQEVR---------RGADRAEIYSLAFSSNA---QW  317 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~----------~~~~~~~~~~---------~~~~~~~v~~l~~sp~~---~~  317 (368)
                      .|..+..++.|..++-.+.+|  |.|..+          ++|+.+...+         .....-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            467788889999888888888  455444          2343322211         11112256788999986   56


Q ss_pred             EEEEeCCCeEEEEEccCCCCC
Q 017642          318 LAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |..-+.|..|||||+......
T Consensus       183 L~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEecCcEEEEEecCCcchh
Confidence            777788999999999887653

>PHA03098 kelch-like protein; Provisional

Probab=87.36  E-value=27  Score=33.25  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             CCCEEEEEeCC--------CcEEEEEECCCCceeEe--eEeccCcccEEEEEEecCCCEEEEEeCC-----CeEEEEEcc
Q 017642          269 DGQLLATSSTK--------GTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLK  333 (368)
Q Consensus       269 ~g~~l~s~~~d--------g~~i~iwd~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~  333 (368)
                      ++++++.|+.+        .. +.+||..+++-...  +..  .......+.  -++++++.|+.+     +.|.+||..
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNI-VESYNPVTNKWTELSSLNF--PRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             CCEEEEECCccCCCCCcccce-EEEecCCCCceeeCCCCCc--ccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCC
Confidence            56677777643        23 78888876553321  111  111111222  267777777654     468888887


Q ss_pred             CCCC
Q 017642          334 VNSG  337 (368)
Q Consensus       334 ~~~~  337 (368)
                      +.+=
T Consensus       512 ~~~W  515 (534)
T PHA03098        512 TNTW  515 (534)
T ss_pred             CCEE
Confidence            7643

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.01  E-value=2.6  Score=23.53  Aligned_cols=28  Identities=18%  Similarity=0.227  Sum_probs=19.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--C--CeEEEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--D--HGFRIY  111 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--d--~~i~iw  111 (368)
                      ....-....|+|||+.|+..+  +  +...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344677889999999998777  3  335555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.89  E-value=36  Score=34.07  Aligned_cols=58  Identities=7%  Similarity=0.086  Sum_probs=38.9

Q ss_pred             EEEEECCCCceeEeeEeccCcc-------cEEEEEEec-CCC---EEEEEeCCCeEEEEEccCCCCCCC
Q 017642          283 VRIFNTLDGTLLQEVRRGADRA-------EIYSLAFSS-NAQ---WLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~-------~v~~l~~sp-~~~---~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      |.-.|.++|+..-.++..+|+.       ...=+.+.. +|+   .++.++.+|.++++|-++++..-.
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            6777888999887776533321       111122322 563   788899999999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.84  E-value=20  Score=34.95  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=26.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR  117 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~  117 (368)
                      ..-++++.-+|.|+.++.+. |+.|++|+..+..
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence            44567788889999999999 8889999986544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.45  E-value=35  Score=33.51  Aligned_cols=144  Identities=11%  Similarity=0.093  Sum_probs=83.0

Q ss_pred             CCEEEEEeCCeEEEEEecCCCcceE----EEcc-----------------cCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           97 HGCFAAGTDHGFRIYNCDPFREIFR----RDFE-----------------RGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        97 g~~l~~~~d~~i~iw~~~~~~~~~~----~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      +.+|.++..+.|.||+.+.......    ..+.                 ..|.+..+.+..-.+..+|+.+.+|     
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd-----  123 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD-----  123 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-----
Confidence            7788888899999999865433210    0000                 1233444444444556666666666     


Q ss_pred             CcEEEEeCCC-------C-------------cEEEEEecCCceeEEEEe--eCccEEE-e--CCcEEEEEcCC--CeEEE
Q 017642          156 NKVMIWDDHQ-------S-------------RCIGELSFRSEVRSVKLR--RDRIIVV-L--EQKIFVYNFAD--LKLLH  208 (368)
Q Consensus       156 ~~i~vwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~-~--d~~i~vwd~~~--~~~~~  208 (368)
                      |.|.+|.+++       .             ++...+.....+++++++  ...+++| +  ...|.||-...  .+...
T Consensus       124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~  203 (717)
T PF08728_consen  124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH  203 (717)
T ss_pred             CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence            9999996521       1             122333467789999998  7777777 3  33555554432  22111


Q ss_pred             E-EeccCCCeeEEEEecCC---Ce-EEEEeecCCCCeEEEEec
Q 017642          209 Q-IETIANPKGLCAVSQGV---GS-LVLVCPGLQKGQVRVEHY  246 (368)
Q Consensus       209 ~-~~~~~~~v~~~~~~~~~---~~-~~l~~~g~~dg~i~i~~~  246 (368)
                      . -..+...|.+++|-++.   .. ..+++ .+-.|.+.++..
T Consensus       204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a-~dI~G~v~~~~I  245 (717)
T PF08728_consen  204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVA-TDISGEVWTFKI  245 (717)
T ss_pred             ccccccccCCCeeEeecCCCCCccceEEEE-EeccCcEEEEEE
Confidence            0 11255678888887765   11 24444 567787777444

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=86.37  E-value=23  Score=31.41  Aligned_cols=148  Identities=11%  Similarity=0.130  Sum_probs=82.7

Q ss_pred             CCceeEEEEeeCccEEE--eCCcEEEEEcCCC-eEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE-ecCcc
Q 017642          175 RSEVRSVKLRRDRIIVV--LEQKIFVYNFADL-KLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE-HYASK  249 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~-~~~~~  249 (368)
                      ...+.++.+.+++.+++  ..|.+.. ....+ +.-..+ ......+..+.+.+++.. +++  | ..|.+++- ...+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~v--g-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL-WML--A-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCE-EEE--e-cCCEEEEccCCCCC
Confidence            45788999999988777  3454443 22222 222222 223456777888888764 322  3 45777652 22222


Q ss_pred             eeeeeec----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-ccCcccEEEEEEecCCCEEEEEeCC
Q 017642          250 RTKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDK  324 (368)
Q Consensus       250 ~~~~~~~----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d  324 (368)
                      .-.....    ....+..+.+.+++..++ ++.+|. | +.....++....... ..-....+.+.|..+++.+++ +..
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~-v-~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~  322 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGT-L-LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR  322 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEE-EcCCCe-E-EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence            2111111    123578899999887555 455665 3 455555555444432 111235788888877776654 567


Q ss_pred             CeEEEEE
Q 017642          325 GTVHVFN  331 (368)
Q Consensus       325 g~i~iwd  331 (368)
                      |.|.-|+
T Consensus       323 G~il~~~  329 (334)
T PRK13684        323 GVLLRYV  329 (334)
T ss_pred             ceEEEec
Confidence            8887665

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.03  E-value=4.2  Score=22.60  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             ccCcceEEEEECCCCCEEEEEeC-C--CcEEEEE
Q 017642          256 AHDSRIACFALTQDGQLLATSST-K--GTLVRIF  286 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g~~l~s~~~-d--g~~i~iw  286 (368)
                      ..........|+|||++|+-++. +  |. -.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            34456778899999997765554 4  55 5555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.83  E-value=4.2  Score=36.82  Aligned_cols=157  Identities=16%  Similarity=0.136  Sum_probs=88.4

Q ss_pred             cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE-EEE-eccCC----Cee-EEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          174 FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL-HQI-ETIAN----PKG-LCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       174 ~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                      ....|..+-..|||+.+.  ....+.++++.+.... +.+ ....+    .|+ .+.+-..|.. +++  ++.||.|.-|
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S-LLv--~~~dG~vsQW  295 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS-LLV--VHEDGLVSQW  295 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee-EEE--EcCCCceeee
Confidence            556788889999999887  5678889988654321 111 11111    111 1111122322 333  4578888774


Q ss_pred             e-c-Ccc-----eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCE
Q 017642          245 H-Y-ASK-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (368)
Q Consensus       245 ~-~-~~~-----~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  317 (368)
                      - . +..     .++.++-...++..+.=..+.+-+++-+.+|+ +.++.....+.+ -+..  --..+.-+++||.+.+
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceeeeCcccch
Confidence            2 2 111     11111112233433332233456778888888 888865444433 2222  1235677899999999


Q ss_pred             EEEEeCCCeEEEEEccCCCCC
Q 017642          318 LAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |++- +.|.|+++.+++..++
T Consensus       372 Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         372 LLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             heee-cCCceEEEEecCCCCC
Confidence            9875 4677999999876554

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.46  E-value=9.7  Score=26.21  Aligned_cols=42  Identities=10%  Similarity=0.079  Sum_probs=28.4

Q ss_pred             EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       276 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      +..+|. +.-||..+++....+.+   -..-+.|++++|+.+|+.+
T Consensus        33 ~~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEE
Confidence            344677 89999988876544443   2357899999999987766

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.16  E-value=34  Score=33.68  Aligned_cols=93  Identities=11%  Similarity=0.020  Sum_probs=48.4

Q ss_pred             eEEEEecCCCeEEEEeec--CCCCe--EEEEecCcceeeee---eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          218 GLCAVSQGVGSLVLVCPG--LQKGQ--VRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g--~~dg~--i~i~~~~~~~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      ..+.|-|.|..  +++-+  +.+..  |.+...++-..-.+   .+....+..++|+-....++.+-. .. |++|-..+
T Consensus       250 ~~LSWkpqgS~--~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~-n~-~~lwttkN  325 (1243)
T COG5290         250 HQLSWKPQGSK--YATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEG-NL-LKLWTTKN  325 (1243)
T ss_pred             hccccccCCce--eeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhc-ce-EEEEEccc
Confidence            34788898875  34333  11222  33344443221111   122334566777666655555443 34 99998665


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      -.-......  .-..+.-+.|+|...
T Consensus       326 yhWYLK~e~--~ip~~s~vkwhpe~~  349 (1243)
T COG5290         326 YHWYLKVER--QIPGISYVKWHPEEK  349 (1243)
T ss_pred             eEEEEEEee--cCCCcceeeeccccC
Confidence            443322222  233567789998654

>PHA03098 kelch-like protein; Provisional

Probab=83.51  E-value=42  Score=31.99  Aligned_cols=107  Identities=16%  Similarity=0.141  Sum_probs=48.9

Q ss_pred             CCCCEEEEEe-CC------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        95 ~~g~~l~~~~-d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      .++.+++.|+ ++      .+..||..+.+......+. ... ....+....+.+++++|..+ ...-..+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~R-~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI-YPR-KNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC-ccc-ccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc
Confidence            3556666666 32      2556665544332111121 111 12233334566666665432 1112467889987765


Q ss_pred             EEEE--EecCCceeEEEEeeCccEEEeC---------CcEEEEEcCCCe
Q 017642          168 CIGE--LSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLK  205 (368)
Q Consensus       168 ~~~~--~~~~~~v~~~~~~~~~~~l~~d---------~~i~vwd~~~~~  205 (368)
                      ....  +.....-.+++. -++++.+..         ..+..||..+.+
T Consensus       370 W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        370 WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            4332  112111122222 244444411         357888987654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.21  E-value=28  Score=29.66  Aligned_cols=191  Identities=10%  Similarity=0.017  Sum_probs=107.4

Q ss_pred             EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE-ecCCceeEEEEeeCccEEEeCC--cEEEEEcCCCeEEEE
Q 017642          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLHQ  209 (368)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~d~--~i~vwd~~~~~~~~~  209 (368)
                      ..++..+++.+-.++...     +.|--.|..+|+....- .....-..|..-|||...+.|.  -|.-.|-++.+.. +
T Consensus        65 ~dvapapdG~VWft~qg~-----gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt-~  138 (353)
T COG4257          65 FDVAPAPDGAVWFTAQGT-----GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT-R  138 (353)
T ss_pred             cccccCCCCceEEecCcc-----ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceE-E
Confidence            345566677555555444     77888888888765432 3566677888899987777443  4665665555432 2


Q ss_pred             E----eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          210 I----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       210 ~----~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      +    +..........|.+.|.-.+   +|...-.=+++ .....+..+.. ....-+.|+..|||...++.-.+.. |-
T Consensus       139 f~lp~~~a~~nlet~vfD~~G~lWF---t~q~G~yGrLd-Pa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagna-ia  213 (353)
T COG4257         139 FPLPLEHADANLETAVFDPWGNLWF---TGQIGAYGRLD-PARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNA-IA  213 (353)
T ss_pred             eecccccCCCcccceeeCCCccEEE---eeccccceecC-cccCceeeeccCCCCCCcceEECCCCcEEEEeccccc-eE
Confidence            2    22233455677888886333   23211111222 22233344433 3345678889999997776555666 77


Q ss_pred             EEECCCCceeEeeEeccC-cccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          285 IFNTLDGTLLQEVRRGAD-RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      ..|..++..- .+..... ...-..+--+|.|+.-++-...+.++.||-.+.
T Consensus       214 ridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         214 RIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             EcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence            7777666322 2221111 223444555677777777666666776665544

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.92  E-value=27  Score=29.31  Aligned_cols=137  Identities=9%  Similarity=0.050  Sum_probs=73.2

Q ss_pred             cEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEEe------CCcEEEEEcCC--CeEEE-EE---eccCCCeeEEEE
Q 017642          157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL------EQKIFVYNFAD--LKLLH-QI---ETIANPKGLCAV  222 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~------d~~i~vwd~~~--~~~~~-~~---~~~~~~v~~~~~  222 (368)
                      .-.+||+.+++.. .+.  ..--+.+-.+.+||+++..      ...+++++..+  +.+-. ..   -...........
T Consensus        47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            3557888877543 233  3333344457789998882      24688888643  11111 00   011223334556


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCc--c-eee--eeec-----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYAS--K-RTK--FIMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~--~-~~~--~~~~-----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (368)
                      -+||+-  ++..|.......+|....  . ...  .+..     ...---.+...|+|++++.+..+.   .|||..+.+
T Consensus       126 L~DG~v--lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---~i~d~~~n~  200 (243)
T PF07250_consen  126 LPDGRV--LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---IIYDYKTNT  200 (243)
T ss_pred             CCCCCE--EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---EEEeCCCCe
Confidence            678874  444465544555554321  1 111  1110     011112456689999988888753   688988887


Q ss_pred             eeEeeEe
Q 017642          293 LLQEVRR  299 (368)
Q Consensus       293 ~~~~~~~  299 (368)
                      .++.+..
T Consensus       201 v~~~lP~  207 (243)
T PF07250_consen  201 VVRTLPD  207 (243)
T ss_pred             EEeeCCC
Confidence            7777664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=82.89  E-value=34  Score=30.51  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             CceeEEEEeeCc-cEEEeCCcEEEEEcCC-CeEEEEEeccCCC-----eeEEEEecCC--------------CeEEEEee
Q 017642          176 SEVRSVKLRRDR-IIVVLEQKIFVYNFAD-LKLLHQIETIANP-----KGLCAVSQGV--------------GSLVLVCP  234 (368)
Q Consensus       176 ~~v~~~~~~~~~-~~l~~d~~i~vwd~~~-~~~~~~~~~~~~~-----v~~~~~~~~~--------------~~~~l~~~  234 (368)
                      +.-..++|...+ .+++.|...-+|.+.- ++....+......     .+.+.+.++|              +.++.+..
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~  194 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALE  194 (376)
T ss_pred             CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeec
Confidence            556788888876 5666777776776632 2221111111110     1122333322              12233334


Q ss_pred             cCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-cEEEEE
Q 017642          235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIF  286 (368)
Q Consensus       235 g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~~i~iw  286 (368)
                      |..+|.+.-++...+..+.+...-.-.+.++.|||+.+++.+-.-- ...+.|
T Consensus       195 g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw  247 (376)
T KOG1520|consen  195 GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW  247 (376)
T ss_pred             CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence            5556766557777766666655555668899999999877664332 214566

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.79  E-value=35  Score=31.69  Aligned_cols=102  Identities=14%  Similarity=0.042  Sum_probs=0.0

Q ss_pred             eEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEEE-------eccCCCeeEEEEecCC------CeEEEEeec-------
Q 017642          179 RSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQI-------ETIANPKGLCAVSQGV------GSLVLVCPG-------  235 (368)
Q Consensus       179 ~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~------~~~~l~~~g-------  235 (368)
                      +.|+|.||+++++  . .|.|++++..++......       .........++++|+-      ..+++.++-       
T Consensus        33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~  112 (454)
T TIGR03606        33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL  112 (454)
T ss_pred             eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc


Q ss_pred             -CCCCeEEE-EecCcceeeeee--------ccCcceEEEEECCCCCEEEEEeCCC
Q 017642          236 -LQKGQVRV-EHYASKRTKFIM--------AHDSRIACFALTQDGQLLATSSTKG  280 (368)
Q Consensus       236 -~~dg~i~i-~~~~~~~~~~~~--------~~~~~i~~v~~sp~g~~l~s~~~dg  280 (368)
                       .....+++ ++.....+...+        .....-..|+|.|||+++++.++.+
T Consensus       113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606       113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.70  E-value=57  Score=32.86  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=68.5

Q ss_pred             CCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCC----cceEEE------c--ccCCceeEEEEEEeCCeEEEEecCCCC
Q 017642           86 PTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFR----EIFRRD------F--ERGGGIGVVEMLFRCNILALVGGGPDP  151 (368)
Q Consensus        86 ~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~----~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~s~~~d~  151 (368)
                      .+...++|+|. .+.||+-+ .|.-.||++....    ......      +  ..........+.|.++...++.+++  
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r--  223 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR--  223 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC--
Confidence            36678999984 45788888 6669999992111    111111      0  0001122335667666544444444  


Q ss_pred             CCCCCcEEEEeCCCCcEEE---EEecCCceeEEEEeeC--cc-EEEeCCcEEEEEcCC
Q 017642          152 QYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD--RI-IVVLEQKIFVYNFAD  203 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~~~~---~~~~~~~v~~~~~~~~--~~-~l~~d~~i~vwd~~~  203 (368)
                          ..+.++|+++.....   ..+....|.++.-+++  +. +++....|...|+..
T Consensus       224 ----~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  224 ----SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ----CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence                689999988775533   2225678889888887  33 333788899999876

These proteins are found in fungi.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.63  E-value=50  Score=33.66  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=47.4

Q ss_pred             EEEEEcCCCeEEEEEeccCC----CeeEEEEecCCCeEEEEeecCC----------CCeEEEE--ecCcceeeeeeccCc
Q 017642          196 IFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGLQ----------KGQVRVE--HYASKRTKFIMAHDS  259 (368)
Q Consensus       196 i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~g~~----------dg~i~i~--~~~~~~~~~~~~~~~  259 (368)
                      |+++|..+++.+..+....+    .+..+.|+......++++.+..          +|.++.+  ...++.+..+....-
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            77788777776665543332    2344556655554233321211          2223331  122222222221111


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      +-.-.+++|-..++++|-.+ . +++||+-..++++.
T Consensus       935 ~~~v~Ai~~f~~~~LagvG~-~-l~~YdlG~K~lLRk  969 (1205)
T KOG1898|consen  935 PGPVGAICPFQGRVLAGVGR-F-LRLYDLGKKKLLRK  969 (1205)
T ss_pred             CccceEEeccCCEEEEeccc-E-EEEeeCChHHHHhh
Confidence            12224556766666655543 4 99999976554433

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=82.33  E-value=33  Score=29.90  Aligned_cols=70  Identities=20%  Similarity=0.379  Sum_probs=49.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc--c--EEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA--E--IYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       261 i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~--~--v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      |++|....+|.+|+++-.-.. |.+.|-.+|+.+..+.+.. .+  .  -...+|-.|-+++-.+..++.|.|+|=
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            778888889999999888888 9999999999988886531 11  1  112344445555555567888888886

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.85  E-value=4.4  Score=38.79  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             ceEEEEECC----CCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          260 RIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       260 ~i~~v~~sp----~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      ....++++.    +..+|++.+.|+. +|+||+.+++++....
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence            345566665    6679999999999 9999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=80.50  E-value=9.5  Score=37.74  Aligned_cols=141  Identities=14%  Similarity=0.271  Sum_probs=80.7

Q ss_pred             EeCCcEEEEEcCCCeEEEEEeccCCCeeEEEE-ecCC-------CeEEEEeecCCCCeEEE----EecCcceeeeee---
Q 017642          191 VLEQKIFVYNFADLKLLHQIETIANPKGLCAV-SQGV-------GSLVLVCPGLQKGQVRV----EHYASKRTKFIM---  255 (368)
Q Consensus       191 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~-------~~~~l~~~g~~dg~i~i----~~~~~~~~~~~~---  255 (368)
                      ..|+.+.+||..++...+.+......|..+.+ .|..       ++++++++   ...+.+    .+.....+..+.   
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT---~~e~~ilgvs~d~~T~Els~fnTgl  175 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVAT---EKEVMILGVSKDTKTGELSLFNTGL  175 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhh---hheeeEEEEEeccccceeEEEecce
Confidence            37999999999887666555544444433332 2322       22233321   122222    222222222222   


Q ss_pred             ---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC--------Cc-------------eeEe-eEeccCcccEEEEE
Q 017642          256 ---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--------GT-------------LLQE-VRRGADRAEIYSLA  310 (368)
Q Consensus       256 ---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~--------~~-------------~~~~-~~~~~~~~~v~~l~  310 (368)
                         ...-.|.|+.-+.+|+.+++|..|   +.||.+.-        .+             .+.+ +..+.+...|..++
T Consensus       176 ~vsvqGinV~civs~e~GrIFf~g~~d---~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~  252 (1263)
T COG5308         176 VVSVQGINVRCIVSEEDGRIFFGGEND---PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLA  252 (1263)
T ss_pred             EEeccCceeEEEEeccCCcEEEecCCC---CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhhee
Confidence               233468888888899998888877   45776531        00             0000 11122456788888


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .......|.+-+....|+-|.+.+..-
T Consensus       253 vDqsRg~ly~Lr~kS~Vray~itkngl  279 (1263)
T COG5308         253 VDQSRGLLYVLRKKSAVRAYSITKNGL  279 (1263)
T ss_pred             ecccccceeeecccceeeeEeeecccc
Confidence            887777888888888899998876544

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.41  E-value=30  Score=34.09  Aligned_cols=140  Identities=8%  Similarity=0.011  Sum_probs=76.9

Q ss_pred             EEEEcCCCCEEEEEe-CCe----EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           90 HISFNQDHGCFAAGT-DHG----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      -+.|--|..+.+++. +.+    +++|.-+..-..    ........-..+.|-|.+..+++-+.|..-..-.|.++..+
T Consensus       206 ~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds----~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN  281 (1243)
T COG5290         206 IIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDS----ASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN  281 (1243)
T ss_pred             EEEEccCcceeeecchhcccccceeeecccccccc----ccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccC
Confidence            457777777887776 322    677753311100    00011112234667777777776654422222456666522


Q ss_pred             ---CCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          165 ---QSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       165 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                         .|+.-........+..++|+-....++  ..+.|++|-..+..-.......-..+.-+.|+|..+..++..
T Consensus       282 GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~  355 (1243)
T COG5290         282 GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR  355 (1243)
T ss_pred             CcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence               233323333556677788877666555  678999998655432222222233456689999887766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		2e-24
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		5e-24
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-04

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 115/246 (46%), Gaps = 20/246 (8%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P + I  ++    G I    ML R N +A V    +  
Sbjct: 22  FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTI---RMLHRTNYIAFVSTKKELL 78
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
           +      IWDD + + I  +   + V+ + L R+ I+V     I ++ F +    ++I  
Sbjct: 79  H------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNP--WNKITE 130
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFAL 266
                G+C  + G   L++       GQ+ V    +   +       + AH + +    L
Sbjct: 131 DIKFGGVCEFANG---LLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRL 187
Query: 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326
            + G ++AT S  GTL+R+F T +G L++E RRG DR  I  + +S +   LAV SDK T
Sbjct: 188 NRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWT 247
Query: 327 VHVFNL 332
           +HVF +
Sbjct: 248 LHVFEV 253

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 116/257 (45%), Gaps = 31/257 (12%)
Query: 93  FNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152
           FNQD  C    T   F IYN  P   I  ++      +  V ML R N +A V G  +  
Sbjct: 27  FNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEV- 82
Query: 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET 212
                V IWDD + + +  +   + V+ + L R+ I+V     I V+ F +     +I  
Sbjct: 83  -----VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP--WKRITD 135
Query: 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------------RTKFIM 255
                G+C  S G   L++       GQ+ +    S                  +   I 
Sbjct: 136 DIRFGGVCEFSNG---LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192
Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
           AH + I    L +   ++AT S  GT++R+F T DG L++E RRG DRA++  + +S++ 
Sbjct: 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252
Query: 316 QWLAVSSDKGTVHVFNL 332
             LAV SDK T+HVF +
Sbjct: 253 SKLAVVSDKWTLHVFEI 269

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303
            H   K    + AH S +   A + DGQ +A++S   T V+++N  +G LLQ +      
Sbjct: 2   SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHS 57
Query: 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFN 331
           + ++ +AFS + Q +A +SD  TV ++N
Sbjct: 58  SSVWGVAFSPDGQTIASASDDKTVKLWN 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.3
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.24
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.24
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.17
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.12
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.08
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.0
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.98
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.94
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.91
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.83
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.79
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.79
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.77
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.74
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.69
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.62
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.6
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.54
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.54
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.52
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.5
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.48
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.45
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.4
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.39
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.38
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.36
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.34
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.32
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.31
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.3
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.27
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.24
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.2
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.09
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.99
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.96
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.64
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.56
3ott_A	758	Two-component system sensor histidine kinase; beta	97.5
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.45
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.4
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.28
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.12
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.81
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.61
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.53
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.46
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.34
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.29
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.29
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.29
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.21
3ott_A	758	Two-component system sensor histidine kinase; beta	95.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.85
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.53
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.48
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.23
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.19
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.77
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.12
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.33
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.87
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	89.71
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.81
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.49
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.87
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	85.1
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.29
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.38

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.9e-39  Score=278.70  Aligned_cols=250  Identities=13%  Similarity=0.154  Sum_probs=215.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|.+.|++++|+|+|++|++|+ |+.|+|||+++....  ..+. .+...+.++.|.+++..+++++.|     +.
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~s~d-----~~   78 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----FR   78 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----SE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEee-ccCCcEEEEEEeCCCCEEEEECCC-----CE
Confidence            34568999999999999999999999 888999999876554  4454 677889999999999999999988     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      |++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||++++ .....+.+|...|.+++|+|++.. .++
T Consensus        79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~  157 (304)
T 2ynn_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFA  157 (304)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT-EEE
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC-EEE
Confidence            9999999999999998 999999999999999888   5999999999877 556778899999999999995433 234


Q ss_pred             eecCCCCeEEEEecCcc-eeeee-eccCcceEEEEECC--CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          233 CPGLQKGQVRVEHYASK-RTKFI-MAHDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~-~~~~~-~~~~~~i~~v~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                       +|+.|+.|++|+.... ....+ ..|...+..+.|+|  ++.+|++|+.|+. |+|||+++++++..+.+  |...|.+
T Consensus       158 -sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~~  233 (304)
T 2ynn_A          158 -SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSF  233 (304)
T ss_dssp             -EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEEE
T ss_pred             -EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEEE
Confidence             3778999999987543 23333 45667899999987  7789999999999 99999999999999998  7889999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                      ++|+|++.+|++++.||+|+|||+++++.....
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            999999999999999999999999987765443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=280.88  Aligned_cols=250  Identities=16%  Similarity=0.242  Sum_probs=221.1

Q ss_pred             ccccCCCCCEEEEEEcCC----CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQD----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~----g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      .....|.+.|++++|+++    +.+|++|+ |+.|+||++..........+. +|...+.++.+++++..+++++.|   
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D---  101 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLD---  101 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETT---
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCC---
Confidence            345689999999999875    66899999 888999999876655555665 899999999999999999999988   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                        +.|++||+.+++.+..+. +...+.+++|+|++.+++   .|+.|++||+++++....+..+...+.+++|+|+++. 
T Consensus       102 --~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-  178 (321)
T 3ow8_A          102 --AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY-  178 (321)
T ss_dssp             --SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE-
T ss_pred             --CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE-
Confidence              999999999999999888 888999999999999988   5899999999999999899888889999999999985 


Q ss_pred             EEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                       +++ |+.||.|++|+... +.+..+.+|...|.+++|+|++++|++|+.|+. |+|||+++++.+..+.+  |...|.+
T Consensus       179 -las-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~  253 (321)
T 3ow8_A          179 -LAS-GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLN  253 (321)
T ss_dssp             -EEE-EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             -EEE-EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEE
Confidence             443 67899999988654 566778899999999999999999999999999 99999999999988887  7889999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++|+|++++|++++.|++|+|||+.+++....
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~  285 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT  285 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE
Confidence            99999999999999999999999988765443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.9e-39  Score=290.62  Aligned_cols=250  Identities=15%  Similarity=0.216  Sum_probs=223.7

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....+|...|++++|+|++.+|++|+ |+.|+|||+.+++..  ..+. +|...+.++.|++++..+++++.|     +
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~-~h~~~V~~v~~~~~~~~l~sgs~D-----~  172 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSAD-----M  172 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-ccCCcEEEEEEcCCCCEEEEEeCC-----C
Confidence            345668999999999999999999999 888999999877665  4564 788899999999999999999988     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +|++||+.+++++..+. |...|.+++|+|++.+++   .|+.|++||+++++++..+.+|...+.++.+++++..  ++
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~--l~  250 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL--IA  250 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE--EE
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE--EE
Confidence            99999999999999888 999999999999998887   5999999999999999999999999999999999984  44


Q ss_pred             eecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCC--------------------CCEEEEEeCCCcEEEEEECCCC
Q 017642          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~--------------------g~~l~s~~~dg~~i~iwd~~~~  291 (368)
                      + |+.|+.|++|+... .....+..|...|.+++|+|+                    |.+|++|+.|+. |++||++++
T Consensus       251 s-~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~  328 (410)
T 1vyh_C          251 S-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG  328 (410)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT
T ss_pred             E-EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCC
Confidence            3 67899999988765 556678899999999999996                    678999999999 999999999


Q ss_pred             ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642          292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       292 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                      +++..+.+  |...|.+++|+|+|++|++++.||+|++||+.+++.....
T Consensus       329 ~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          329 MCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             EEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence            99999987  7889999999999999999999999999999887665443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=278.42  Aligned_cols=239  Identities=16%  Similarity=0.247  Sum_probs=216.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ...+|...|.+++|++++.++++++ |+.|++||+.+++..  ..+. .+...+..+.|++++..+++++.|     +.|
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~-~~~~~~~~~~~spdg~~l~~g~~d-----g~v  146 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--KSID-AGPVDAWTLAFSPDSQYLATGTHV-----GKV  146 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCTTCCCCEEECTTSSEEEEECTT-----SEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--EEEe-CCCccEEEEEECCCCCEEEEEcCC-----CcE
Confidence            3568999999999999999999999 888999999876654  3443 666778889999999999999988     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      ++||+.+++....+. +...|.+++|+|++++++   .|+.|++||+++++.+..+.+|...+.+++|+|+++.  +++ 
T Consensus       147 ~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~--l~s-  223 (321)
T 3ow8_A          147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL--LVT-  223 (321)
T ss_dssp             EEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE--EEE-
T ss_pred             EEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE--EEE-
Confidence            999999999988887 888999999999999988   5999999999999999999999999999999999984  443 


Q ss_pred             cCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       235 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      |+.|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+. |+|||+.+++++..+..  |...|.+++|+|
T Consensus       224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~  300 (321)
T 3ow8_A          224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNG  300 (321)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECC
Confidence            77899999988764 566778899999999999999999999999999 99999999999999987  788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEc
Q 017642          314 NAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~  332 (368)
                      ++++|++++.||+|+|||+
T Consensus       301 ~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          301 NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TSSEEEEEETTCCEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEeC
Confidence            9999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=279.79  Aligned_cols=243  Identities=12%  Similarity=0.143  Sum_probs=201.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEc-ccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..|...|.+++|+|++. |++|+ |+.|+|||+++++......+ ..+|...|.+++|++++..+++++.|     +.|+
T Consensus        79 ~~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~  152 (344)
T 4gqb_B           79 VQTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIK  152 (344)
T ss_dssp             EEESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred             eccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            34667899999999975 45555 88899999998776543221 13788899999999999999999988     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEE
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +||+.+++++..+. |...|.+++|++++. +++   .|+.|++||+++++....+.  .+...+.+++|+|++..+ ++
T Consensus       153 iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-l~  231 (344)
T 4gqb_B          153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV-FV  231 (344)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE-EE
T ss_pred             EEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc-eE
Confidence            99999999999998 999999999999875 444   58999999999998887764  345568899999977663 33


Q ss_pred             eecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          233 CPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                       +|+.||.|++|+.. ++.+..+.+|...|++++|+|++ ++|++|+.|+. |+|||+.+++.+ .+.+  |.+.|++++
T Consensus       232 -sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~--H~~~V~~v~  306 (344)
T 4gqb_B          232 -FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQA--HRDFVRDAT  306 (344)
T ss_dssp             -EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECC--CSSCEEEEE
T ss_pred             -EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcC--CCCCEEEEE
Confidence             37789999998865 46678899999999999999998 58999999999 999999988765 4555  888999999


Q ss_pred             EecCCC-EEEEEeCCCeEEEEEccCCC
Q 017642          311 FSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       311 ~sp~~~-~l~s~s~dg~i~iwd~~~~~  336 (368)
                      |+|+++ +|++++.|++|++|++.+..
T Consensus       307 ~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          307 WSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999986 67789999999999997643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-38  Score=285.21  Aligned_cols=243  Identities=16%  Similarity=0.276  Sum_probs=216.6

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|.+.|++++|+|+|++|++|+ |+.|+|||+...+..  ..+. +|...+.++.|++++..+++++.|     +.
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~-~h~~~V~~v~~~p~~~~l~s~s~D-----~~  215 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMH-GHDHNVSSVSIMPNGDHIVSASRD-----KT  215 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCC-CCSSCEEEEEECSSSSEEEEEETT-----SE
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEEc-CCCCCEEEEEEeCCCCEEEEEeCC-----Ce
Confidence            44567999999999999999999999 888999998765544  5564 788899999999999999999888     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC------
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG------  227 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------  227 (368)
                      |++||+.+++++..+. |...|.++.+++++.+++   .|+.|++||++++++...+..|...+.+++|+|++.      
T Consensus       216 i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  295 (410)
T 1vyh_C          216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE  295 (410)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred             EEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence            9999999999999998 999999999999999888   599999999999999999999999999999999742      


Q ss_pred             ------------eEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee
Q 017642          228 ------------SLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       228 ------------~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                                  ..++++ |+.|+.|++|+.. +..+..+.+|...|++++|+|+|++|++|+.||. |+|||+.+++++
T Consensus       296 ~~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~  373 (410)
T 1vyh_C          296 ATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCM  373 (410)
T ss_dssp             CCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCC
T ss_pred             hccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceE
Confidence                        123444 7789999999865 4667788899999999999999999999999999 999999999999


Q ss_pred             EeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       295 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ..+..  |...|.+++|+|++.+|++|+.||+|+||+++
T Consensus       374 ~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          374 KTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99987  78899999999999999999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.5e-37  Score=272.18  Aligned_cols=251  Identities=14%  Similarity=0.150  Sum_probs=217.2

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+..  ..+. .+...+.++.|++++..+++++.|     +
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d-----~  119 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD-----N  119 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--EEEE-CSSSCEEEEEECTTSSEEEEEETT-----C
T ss_pred             heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--eEee-cCCccEEEEEECCCCCEEEEEeCC-----C
Confidence            455678999999999999999999999 888999998876655  3343 677889999999999999999988     9


Q ss_pred             cEEEEeCCCCc----EEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          157 KVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       157 ~i~vwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      .|++||+.+++    ....+. |.+.|.++.|++++.++.  .|+.|++||+++++.+..+.+|...|.+++|+|+++. 
T Consensus       120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-  198 (340)
T 1got_B          120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-  198 (340)
T ss_dssp             EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-
T ss_pred             eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE-
Confidence            99999998753    445555 899999999999998666  6999999999999999999999999999999999874 


Q ss_pred             EEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                       ++ +|+.|+.|++|+... .....+.+|...|.+++|+|++++|++|+.||. |+|||+++++.+..+....+...|.+
T Consensus       199 -l~-sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          199 -FV-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             -EE-EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             -EE-EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEE
Confidence             44 377899999998654 566778899999999999999999999999999 99999999988877764333457999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++|+|+|++|++|+.||.|++||+.+++....
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~  307 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence            99999999999999999999999988765443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-36  Score=269.14  Aligned_cols=239  Identities=12%  Similarity=0.146  Sum_probs=206.3

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc--ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ....|...|.+++|+|+|++|++|+ |+.|++|++...+.  .....+. +|...+.++.|.+++. +++++.|     +
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~s~d-----~  164 (340)
T 1got_B           92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQ-IVTSSGD-----T  164 (340)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEETTE-EEEEETT-----S
T ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCCCc-EEEEECC-----C
Confidence            3457888999999999999999999 88899999976543  2334454 7888889999988877 4555555     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      .|++||+.+++.+..+. |.+.|.+++|+|++.+++   .|+.|++||+++++++..+.+|...|.+++|+|+++.  ++
T Consensus       165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~--l~  242 (340)
T 1got_B          165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FA  242 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE--EE
T ss_pred             cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE--EE
Confidence            99999999999999998 999999999999999887   5999999999999999999999999999999999985  44


Q ss_pred             eecCCCCeEEEEecCcce-eeeee--ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEE
Q 017642          233 CPGLQKGQVRVEHYASKR-TKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~~-~~~~~--~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (368)
                      + |+.||.|++|+..... +..+.  .+...|.+++|+|+|++|++|+.||. |++||+.+++.+..+.+  |...|.++
T Consensus       243 s-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~~  318 (340)
T 1got_B          243 T-GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCL  318 (340)
T ss_dssp             E-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEE
T ss_pred             E-EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEEE
Confidence            3 6789999999976543 33332  23357999999999999999999999 99999999999989887  88899999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEE
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +|+|+|.+|++|+.|++|+|||
T Consensus       319 ~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=275.09  Aligned_cols=243  Identities=14%  Similarity=0.134  Sum_probs=195.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecC----------CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP----------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP  151 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  151 (368)
                      ..|...|.+++|+|||++|++++|..+++||...          ........+  .+...|.+++|++++.++ +++.| 
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~l~-~~s~d-  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGERGIL-VASDS-  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTTEEE-EEETT-
T ss_pred             ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCCeEE-EEECC-
Confidence            3577789999999999999999988888887321          011111111  345568999999987655 55555 


Q ss_pred             CCCCCcEEEEeCCCCcEEEEE-----ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEe
Q 017642          152 QYPLNKVMIWDDHQSRCIGEL-----SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  223 (368)
                          |.|+|||+.+++.+..+     .|.+.|++++|+|++++++   .|+.|++||+++++++..+.+|...|.+++|+
T Consensus       103 ----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          103 ----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             ----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence                99999999988754432     2889999999999999988   58999999999999999999999999999999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCc-ceeeee--eccCcceEEEEECCC-CCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI--MAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~--~~~~~~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +++..+++  +|+.|+.|++|+... +....+  ..|...+.+++|+|+ +++|++|+.||. |+|||+++++++..+.+
T Consensus       179 ~~~~~~l~--s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          179 PHKDSVFL--SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             SSCTTEEE--EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred             CCCCCcee--eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence            99976443  367899999998765 444444  345667999999995 568999999999 99999999999999988


Q ss_pred             ccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCC
Q 017642          300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       300 ~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                        |...|.+++|+|++ ++|++|+.|++|+|||+++++.
T Consensus       256 --h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          256 --HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             --CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence              78899999999998 5799999999999999987754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.5e-38  Score=278.93  Aligned_cols=247  Identities=15%  Similarity=0.204  Sum_probs=199.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEc-ccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|...|.+++|+|++++|+++.|+.|+|||+.+.+......+ ..+|...|.+++|++++..+++++.|     +.|+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~  164 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK  164 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            34688899999999999888776699999999987654322211 12678889999999999999999888     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEE
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +||+++++.+..+. |...|.+++|++++. +++   .|+.|++||+++++....+.  .+...+.+++|+|++..+ ++
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~-la  243 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT-FA  243 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE-EE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce-EE
Confidence            99999999999998 999999999999864 343   58999999999988766553  456678999999987763 34


Q ss_pred             eecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          233 CPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      + |+.|+.|++|+.. .+.+..+.+|...|++++|+|++ ++|++|+.|+. |+|||+++++.+..+ +  |...|++|+
T Consensus       244 ~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~-~--H~~~V~~va  318 (357)
T 4g56_B          244 C-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL-S--HRDFVTGVA  318 (357)
T ss_dssp             E-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC-C--CSSCEEEEE
T ss_pred             E-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC-C--CCCCEEEEE
Confidence            3 7789999998765 46677888999999999999987 58999999999 999999999887654 3  888999999


Q ss_pred             Eec-CCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          311 FSS-NAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       311 ~sp-~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |+| |+++|++++.||+|++|++.+..+.
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            998 8999999999999999999765544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-36  Score=264.72  Aligned_cols=247  Identities=15%  Similarity=0.198  Sum_probs=200.9

Q ss_pred             cccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      ...+|.+.|++++|+|++ ++|++|+ |+.|++|++......   ....+. +|...+.++.|++++..+++++.|    
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D----   86 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWD----   86 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCC----
Confidence            456899999999999965 7999999 888999998753322   234454 888999999999999999999988    


Q ss_pred             CCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC---
Q 017642          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---  227 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---  227 (368)
                       ++|++||+.+++.+..+. |...|.+++|++++.+++   .|+.|++||++ ++++..+.+|...+..+.+.|...   
T Consensus        87 -~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 -KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred             -CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCC
Confidence             999999999999999988 999999999999999888   59999999996 567778888999999999998643   


Q ss_pred             -eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-----
Q 017642          228 -SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----  300 (368)
Q Consensus       228 -~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----  300 (368)
                       ...+++ ++.|+.|++|+... +....+.+|...|.+++|+|+|++|++++.||. |+|||+.+++.+..+...     
T Consensus       165 ~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~  242 (319)
T 3frx_A          165 DSVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFS  242 (319)
T ss_dssp             -CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEE
T ss_pred             CccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEE
Confidence             223443 77899999998765 455668899999999999999999999999999 999999988766555421     


Q ss_pred             -----------------------------------------cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          301 -----------------------------------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       301 -----------------------------------------~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                                                               .+...+.+++|+|||++|++|+.||.|+|||+.+.
T Consensus       243 ~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          243 LAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                                                     01234566777777777777777777777777653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-36  Score=269.97  Aligned_cols=253  Identities=12%  Similarity=0.116  Sum_probs=214.9

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      ......+|...|++++|+|++++|++|+ |+.|+|||..+.....  .+. .+...+.++.|++++..+++++.|     
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~-~~~~~v~~~~~sp~g~~lasg~~d-----  127 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AVT-MPCTWVMACAYAPSGCAIACGGLD-----  127 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEE-CSSSCCCEEEECTTSSEEEEESTT-----
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EEe-cCCCCEEEEEECCCCCEEEEeeCC-----
Confidence            3455678999999999999999999999 8889999987766553  343 566778999999999999999998     


Q ss_pred             CcEEEEeCCCC------cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecC
Q 017642          156 NKVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       156 ~~i~vwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  225 (368)
                      +.+++|++...      .....+. |...|.+++|++++..++   .|++|++||+++++++..+.+|...+.+++++++
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence            99999998643      2344555 999999999999998777   5999999999999999999999999999999886


Q ss_pred             CCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      .+..++++ |+.||.|++|+... +.+..+..|...|++++|+|++.+|++|+.|+. |++||++.++.+..+....+..
T Consensus       208 ~~g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          208 ETGNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             SSCCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCS
T ss_pred             CCCCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCccc
Confidence            43224454 77899999988654 667778899999999999999999999999999 9999999988877666533445


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      .+.+++|+|+|++|++++.|+.|++||+.+++...
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            78999999999999999999999999998876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=265.57  Aligned_cols=248  Identities=18%  Similarity=0.238  Sum_probs=206.4

Q ss_pred             cccCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           80 TSSSPPP-TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        80 ~~~~h~~-~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....|.. .|++++|+|+|++|++|+ |+.|+||+++.........+..+|...+.+++|++++..+++++.|     +.
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~   84 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----AT   84 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----Cc
Confidence            3456777 999999999999999999 8889999998765443333333788899999999999999999988     99


Q ss_pred             EEEEeCCCCc--EEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC---eEEEEEeccCCCeeEEEEecCCCe
Q 017642          158 VMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       158 i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      |++||+..+.  ++..+. |...|.+++|+|++.+++   .|+.|++||++++   +++..+..|...+.+++|+|+++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            9999988764  566676 999999999999999888   5999999999765   456677889999999999999985


Q ss_pred             EEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC--------------
Q 017642          229 LVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--------------  291 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~--------------  291 (368)
                        +++ |+.|+.|++|+....   ....+.+|...|.+++|+|+|++|++++.|+. |+|||....              
T Consensus       165 --l~s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          165 --LAS-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             --EEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CE
T ss_pred             --EEE-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCc
Confidence              443 678999999887653   34578899999999999999999999999999 999996422              


Q ss_pred             -ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          292 -TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       292 -~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                       +++..+.+ .|...|.+++|++++..|++++.|+.|++|++.....
T Consensus       241 ~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~  286 (345)
T 3fm0_A          241 WKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD  286 (345)
T ss_dssp             EEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC
T ss_pred             cceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC
Confidence             22333333 2677899999999999999999999999999986543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-36  Score=261.01  Aligned_cols=247  Identities=16%  Similarity=0.150  Sum_probs=199.7

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~~  156 (368)
                      ....|.+.|++++|+|+|++|++|+ |+.|+||+++.........+. +|...|.++.|++.  +..+++++.|     +
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D-----~   77 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----G   77 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----T
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCC-----C
Confidence            3568999999999999999999999 888999999754433335565 88899999999753  6788888887     9


Q ss_pred             cEEEEeCCCCc--EEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCe--EEEEEeccCCCeeEEEEecCC
Q 017642          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       157 ~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      +|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++++.  ....+..|...+.+++|+|++
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            99999998874  455565 8899999999997  66766   59999999998763  245667899999999999974


Q ss_pred             C-----------eEEEEeecCCCCeEEEEecCcc-----eeeeeeccCcceEEEEECCCC---CEEEEEeCCCcEEEEEE
Q 017642          227 G-----------SLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFN  287 (368)
Q Consensus       227 ~-----------~~~l~~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~v~~sp~g---~~l~s~~~dg~~i~iwd  287 (368)
                      .           ..++++ |+.|+.|++|+....     ....+.+|...|.+++|+|++   .+|++++.|+. |+|||
T Consensus       158 ~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd  235 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWT  235 (297)
T ss_dssp             ------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred             ccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEE
Confidence            1           113454 778999999987542     445688999999999999985   79999999999 99999


Q ss_pred             CCCCce---eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          288 TLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       288 ~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +.+...   ...+....|...|.+++|+|+|++|++++.|++|+||+...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            987531   12222123677899999999999999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.1e-36  Score=269.05  Aligned_cols=239  Identities=18%  Similarity=0.248  Sum_probs=208.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      +...|.+++|+|+|++|++|+ |+.|+|||+++.+..  ..+. +|...+.++.|++++..+++++.|     +.|++||
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd  193 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQ-GHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWD  193 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEc-cCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEE
Confidence            344699999999999999999 888999999876544  4454 788899999999999999999888     9999999


Q ss_pred             CCCCcEEEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEE-------eccCCCeeEEEEecCCCeEEE
Q 017642          163 DHQSRCIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI-------ETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +.++++...+.+...+.+++|+| ++.+++   .|+.|++||+++++.+..+       .+|...|.+++|+++++.  +
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--l  271 (393)
T 1erj_A          194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--V  271 (393)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--E
T ss_pred             CCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE--E
Confidence            99999999888888999999999 888887   5999999999999887776       468889999999999985  4


Q ss_pred             EeecCCCCeEEEEecCc-------------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          232 VCPGLQKGQVRVEHYAS-------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-------------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      ++ |+.|+.|++|+...             .....+.+|...|.+++|++++++|++|+.|+. |++||+.+++.+..+.
T Consensus       272 ~s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          272 VS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EE-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEEC
Confidence            43 77899999998653             234567789999999999999999999999999 9999999999999998


Q ss_pred             eccCcccEEEEEEec------CCCEEEEEeCCCeEEEEEccCCC
Q 017642          299 RGADRAEIYSLAFSS------NAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       299 ~~~~~~~v~~l~~sp------~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +  |...|.+++|++      ++++|++|+.||+|+||++.+.+
T Consensus       350 ~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          350 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             C--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence            7  788999999986      68899999999999999997653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=263.37  Aligned_cols=249  Identities=16%  Similarity=0.178  Sum_probs=202.1

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|...|.+++|+|+|++|++|+ |+.++||++..........+. +|...+.+++|++++..+++++.|     +.|+
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~  130 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRD-----KSVW  130 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECC-----CeEE
Confidence            357999999999999999999999 888999999876655556665 888999999999999999999988     9999


Q ss_pred             EEeCCCCc---EEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe--EEEEEeccCCCeeEEEEecCCCeEE
Q 017642          160 IWDDHQSR---CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       160 vwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      +||+.++.   ++..+. |...|.+++|+|++.+++   .|+.|++||+++++  +...+.+|...|.+++|+|+++.  
T Consensus       131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~--  208 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR--  208 (345)
T ss_dssp             EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE--
T ss_pred             EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE--
Confidence            99998764   345555 889999999999999888   59999999998775  45678889999999999999985  


Q ss_pred             EEeecCCCCeEEEEecCc----------------ceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc-
Q 017642          231 LVCPGLQKGQVRVEHYAS----------------KRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-  292 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~----------------~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~-  292 (368)
                      |++ |+.|+.|++|+...                ..+..+.+ |...|.+++|++++..|++++.|+. |++|+...+. 
T Consensus       209 l~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~  286 (345)
T 3fm0_A          209 LAS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSD  286 (345)
T ss_dssp             EEE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSC
T ss_pred             EEE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCC
Confidence            443 77899999997521                12233333 8889999999999999999999999 9999987543 


Q ss_pred             ---eeEeeE---eccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCC
Q 017642          293 ---LLQEVR---RGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       293 ---~~~~~~---~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                         ....+.   ...|...|.+++|+|++ .+|++++.||+|++|++.++++..
T Consensus       287 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             TTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             cceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence               111111   11278899999999998 599999999999999999887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-35  Score=283.20  Aligned_cols=252  Identities=12%  Similarity=0.172  Sum_probs=208.3

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ......|...|++++|+|+|++||+|+ |+.|+|||+...+......+. .|...+.+++|++++..+++++.+.. ..+
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~  129 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRE-RFG  129 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSS-CSE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCCC-cee
Confidence            345568999999999999999999999 888999999766555555564 78889999999999988877654300 013


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccE-EE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      .|++||  .++....+. |...|.+++|+|++.. ++   .|++|++||.++++++..+.+|...|.+++|+|+++.  +
T Consensus       130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~--l  205 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL--F  205 (611)
T ss_dssp             EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE--E
T ss_pred             EEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE--E
Confidence            678887  455666666 9999999999999863 55   5999999999999999999999999999999999984  4


Q ss_pred             EeecCCCCeEEEEecC-cceeeeee-------ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe----
Q 017642          232 VCPGLQKGQVRVEHYA-SKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR----  299 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~-~~~~~~~~-------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~----  299 (368)
                      ++ |+.|+.|++|+.. ++....+.       +|...|.+++|+|+|++|++++.|+. |+|||+.+++.+..+..    
T Consensus       206 as-~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~  283 (611)
T 1nr0_A          206 AS-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRI  283 (611)
T ss_dssp             EE-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSG
T ss_pred             EE-EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCc
Confidence            43 7789999999854 45555553       79999999999999999999999999 99999998876654421    


Q ss_pred             -------------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          300 -------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       300 -------------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                                                           ..|...|.+++|+|||++|++++.|++|++||+.+++.
T Consensus       284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence                                                 12677899999999999999999999999999988754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.5e-35  Score=259.12  Aligned_cols=248  Identities=18%  Similarity=0.226  Sum_probs=205.2

Q ss_pred             ccccCCCCCEEEEEE-----cC-CCCEEEEEe-CCeEEEEEecCCCc-----ceEEEcccCCceeEEEEEEeCCeEEEEe
Q 017642           79 STSSSPPPTLLHISF-----NQ-DHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNILALVG  146 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~-----s~-~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s  146 (368)
                      ....+|.+.|++++|     ++ ++++|++|+ |+.|+|||+...+.     .....+. +|...+.++.|++++.++++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEE
Confidence            345689999999999     76 899999999 88899999975432     2234454 78889999999999999999


Q ss_pred             cCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEe---ccCCCeeE
Q 017642          147 GGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE---TIANPKGL  219 (368)
Q Consensus       147 ~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~---~~~~~v~~  219 (368)
                      ++.|     +.|++||+++++.+..+. |...|.+++|+|++.+++   .|+.|++||+... ....+.   .|...+.+
T Consensus        94 ~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           94 SSWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             EETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEE
T ss_pred             EcCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeee
Confidence            9988     999999999999999988 999999999999999887   5999999999743 333333   57788999


Q ss_pred             EEEecCCCe--------EEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-
Q 017642          220 CAVSQGVGS--------LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-  290 (368)
Q Consensus       220 ~~~~~~~~~--------~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-  290 (368)
                      ++|+|++..        .++++ ++.|+.|++|+........+.+|...|.+++|+|+|++|++|+.||. |+|||+.+ 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~  245 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL  245 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC
T ss_pred             eeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC
Confidence            999998731        13444 67899999999887778888999999999999999999999999999 99999954 


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      ......+.   +...|.+++|+|++.+++++ .|+.|++||+.+++...
T Consensus       246 ~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          246 TYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             SSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred             cccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence            44444443   34579999999999988755 57789999998876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.1e-36  Score=263.28  Aligned_cols=245  Identities=17%  Similarity=0.162  Sum_probs=196.4

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~  156 (368)
                      ....|.+.|++++|+|+|++|++|+ |+.|+|||+.+........+. +|...|.+++|++  ++..+++++.|     +
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D-----~   81 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYD-----R   81 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETT-----S
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECC-----C
Confidence            4468999999999999999999999 888999999876554445665 8889999999975  36778888887     9


Q ss_pred             cEEEEeCCCCc--EEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCeE---EEEEeccCCCeeEEEEecC
Q 017642          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       157 ~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~  225 (368)
                      +|++||+++++  ....+. |...|.+++|+|+  +.+++   .|+.|++||++.+..   ...+..|...+.+++|+|+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            99999998874  556666 8999999999997  66776   599999999987532   3445678888999999987


Q ss_pred             CC---------------eEEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEECCCC----CEEEEEeCCCcE
Q 017642          226 VG---------------SLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTL  282 (368)
Q Consensus       226 ~~---------------~~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp~g----~~l~s~~~dg~~  282 (368)
                      ..               ..++++ |+.|+.|++|+...    ..+..+.+|...|.+++|+|++    ++|++++.|+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-  239 (316)
T 3bg1_A          162 VVPGSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-  239 (316)
T ss_dssp             CCC------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-
T ss_pred             cCCccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-
Confidence            31               113454 88999999998764    3566788999999999999987    79999999999 


Q ss_pred             EEEEECCCC---c-eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          283 VRIFNTLDG---T-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       283 i~iwd~~~~---~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      |+|||+.+.   + ....+..  |...|.+++|+|++++|++++.|++|+||+...
T Consensus       240 v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          240 VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            999998763   1 1223444  678999999999999999999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-36  Score=268.42  Aligned_cols=245  Identities=14%  Similarity=0.164  Sum_probs=193.6

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeC-------CeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGTD-------HGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~d-------~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      ..|...|++++|+|||++|++|++       +.|++|+...+...  ..... ..|...|.+++|++++.+++++. |  
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s~d~~~l~~s~-d--  114 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWVSEKGILVASD-S--  114 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEETTTEEEEEET-T--
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEcCCCCEEEEEC-C--
Confidence            469999999999999999999983       34888876554321  11111 15677799999999988777654 4  


Q ss_pred             CCCCcEEEEeCCCCcEEEE-----EecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642          153 YPLNKVMIWDDHQSRCIGE-----LSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  224 (368)
                         |.|+|||+.+++....     ..|...|.+++|+|++.+++   .|+.|++||+++++++..+..|...+.+++|++
T Consensus       115 ---g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          115 ---GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             ---SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ---CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence               9999999988865432     23889999999999999888   589999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecCc-ceeee--eeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYAS-KRTKF--IMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~--~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                      +++.+++.  ++.||.|++|+... +....  +..|...+.+++|+|++ .+|++|+.|+. |++||+++++.+..+.. 
T Consensus       192 ~~~~~~~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~-  267 (357)
T 4g56_B          192 GKDTIFLS--CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV-  267 (357)
T ss_dssp             TCSSCEEE--EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC-
T ss_pred             CCCceeee--eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec-
Confidence            98764443  56899999998765 33333  34577789999999975 68999999999 99999999999988887 


Q ss_pred             cCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCC
Q 017642          301 ADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                       |...|.+++|+|++ ++|++++.|++|+|||+++++..
T Consensus       268 -~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          268 -HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             -CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             -cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence             78899999999987 57899999999999999887654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-35  Score=258.94  Aligned_cols=242  Identities=17%  Similarity=0.279  Sum_probs=189.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC-----cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .|...|.+++|+|++++|++|+ |+.|+||+++...     ......+. +|...+.++.|++++..+++++.|     +
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D-----~  129 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRD-----K  129 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-----S
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCC-----C
Confidence            4999999999999999999999 8889999985321     22334454 788899999999999999999988     9


Q ss_pred             cEEEEeCCC----CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC--eEEEEEeccCCCeeEEEEecCC
Q 017642          157 KVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGV  226 (368)
Q Consensus       157 ~i~vwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~  226 (368)
                      .|++||+..    .+++..+. |...|.+++|+|++.+++   .|+.|++||+.++  +++..+.+|...|.+++|++++
T Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE  209 (330)
T ss_dssp             CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred             EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence            999999943    24566776 899999999999999888   5999999999776  6788899999999999999985


Q ss_pred             CeEEEEeecCCCCeEEEEecCcc---------eeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc--ee
Q 017642          227 GSLVLVCPGLQKGQVRVEHYASK---------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LL  294 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~~---------~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~  294 (368)
                      ....+++ |+.|+.|++|+....         ....+.. |...|.+++|++++ +|++++.||. |+|||..+++  .+
T Consensus       210 ~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~  286 (330)
T 2hes_X          210 GVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVF  286 (330)
T ss_dssp             SSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEE
T ss_pred             CeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEE
Confidence            4434554 778999999987542         2333444 89999999999765 7999999999 9999998774  23


Q ss_pred             EeeEeccCcc-cEEEEEEec--CCCEEEEEeCCCeEEEEEccC
Q 017642          295 QEVRRGADRA-EIYSLAFSS--NAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       295 ~~~~~~~~~~-~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      .... ..|.. .|.+++|+|  ++++|++++.||+|+|||+++
T Consensus       287 ~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          287 AKRA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             eccc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2221 12555 899999999  789999999999999999865

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-35  Score=266.65  Aligned_cols=253  Identities=13%  Similarity=0.190  Sum_probs=198.2

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC----
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----  152 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~----  152 (368)
                      .....+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+..  ..+. .|...+.+++|++++..+++++.|..    
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--HAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--EEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--eEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            345678999999999999999999999 888999998766544  2232 34444555555554444444332200    


Q ss_pred             -----------------------------------------CCCCcEEEEeCCCCcEEEEE-----e-cCCceeEEEEee
Q 017642          153 -----------------------------------------YPLNKVMIWDDHQSRCIGEL-----S-FRSEVRSVKLRR  185 (368)
Q Consensus       153 -----------------------------------------~~~~~i~vwd~~~~~~~~~~-----~-~~~~v~~~~~~~  185 (368)
                                                               -.|+.|++||+.+++.+..+     . |...|.+++|++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence                                                     01388999999999888777     3 778899999987


Q ss_pred             -CccEEE---eCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeecc--
Q 017642          186 -DRIIVV---LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH--  257 (368)
Q Consensus       186 -~~~~l~---~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~--  257 (368)
                       ++.+++   .|+.|++||++ .++.+..+.+|...|.+++|+|+++.  ++ +|+.||.|++|+... ..+..+..+  
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~--l~-s~s~D~~i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR--FG-TGSDDGTCRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE--EE-EECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe--EE-EEcCCCeEEEEECCCCcEEEEeccccc
Confidence             677776   59999999997 45778889999999999999999985  44 378999999998765 344444332  


Q ss_pred             -----CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe--ccCcccEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642          258 -----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       258 -----~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                           ...|++++|+|+|++|++|+.||. |+|||+.+++.+..+..  ..|.+.|.+++|+|||++|++|+.|++|+||
T Consensus       293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          293 RNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             SSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence                 234899999999999999999999 99999999988877631  2278899999999999999999999999999


Q ss_pred             EccCCCC
Q 017642          331 NLKVNSG  337 (368)
Q Consensus       331 d~~~~~~  337 (368)
                      ++...++
T Consensus       372 ~~~~~~~  378 (380)
T 3iz6_a          372 AFSGHRK  378 (380)
T ss_dssp             ECCSSSS
T ss_pred             ecCCCcc
Confidence            9986543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-35  Score=263.72  Aligned_cols=245  Identities=16%  Similarity=0.206  Sum_probs=204.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEccc-----------------CCceeEEEEEEeCCeEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-----------------GGGIGVVEMLFRCNILALV  145 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  145 (368)
                      .|...|.+++|+|||++|++|+++.++||++.+++....  +..                 .+...+.+++|++++..++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR--LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE--ECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEE--ecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            599999999999999999999988999999987665422  210                 1223488999999999999


Q ss_pred             ecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEE
Q 017642          146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (368)
Q Consensus       146 s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  221 (368)
                      +++.|     +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||++++++...+. +...+..++
T Consensus       140 s~~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~  213 (393)
T 1erj_A          140 TGAED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  213 (393)
T ss_dssp             EEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             EEcCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence            99888     999999999999998888 999999999999998888   59999999999999887775 556789999


Q ss_pred             Eec-CCCeEEEEeecCCCCeEEEEecCcc-eeeee-------eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-
Q 017642          222 VSQ-GVGSLVLVCPGLQKGQVRVEHYASK-RTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-  291 (368)
Q Consensus       222 ~~~-~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~-------~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-  291 (368)
                      ++| +++.  +++ |+.|+.|++|+.... .+..+       .+|...|.+++|+|+|++|++|+.|+. |++||+++. 
T Consensus       214 ~~~~~~~~--l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~  289 (393)
T 1erj_A          214 VSPGDGKY--IAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN  289 (393)
T ss_dssp             ECSTTCCE--EEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----
T ss_pred             EECCCCCE--EEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCC
Confidence            999 6653  443 678999999987653 33333       578999999999999999999999999 999999763 


Q ss_pred             -----------ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 017642          292 -----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       292 -----------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                                 .+...+.+  |...|.+++|++++++|++++.|+.|++||+.+++.....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             -----------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence                       34455665  7789999999999999999999999999999988765433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.9e-35  Score=259.51  Aligned_cols=240  Identities=13%  Similarity=0.178  Sum_probs=205.6

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc----ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      ....|...|.+++|+|+|.+|++|+ |+.+++|++.....    .....+. .|...+.++.|++++..+++++.|    
T Consensus       101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D----  175 (354)
T 2pbi_B          101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGD----  175 (354)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETT----
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCC----
Confidence            3456778899999999999999999 88899999864321    1223343 678889999999999888888887    


Q ss_pred             CCcEEEEeCCCCcEEEEEe-cCCceeEEEEee--CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                       ++|++||+++++.+..+. |...|.++++++  ++.+++   .|+.|++||+++++++..+..|...|.+++|+|+++.
T Consensus       176 -~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~  254 (354)
T 2pbi_B          176 -GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA  254 (354)
T ss_dssp             -SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             -CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE
Confidence             999999999999999998 999999999987  456666   5999999999999999999999999999999999984


Q ss_pred             EEEEeecCCCCeEEEEecCcce-eeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          229 LVLVCPGLQKGQVRVEHYASKR-TKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~~-~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                        +++ |+.|+.|++|+..... +..+..  +...+.+++|+|+|++|++|+.|+. |+|||+.+++.+..+.+  |...
T Consensus       255 --l~s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~~  328 (354)
T 2pbi_B          255 --FAS-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HENR  328 (354)
T ss_dssp             --EEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSSC
T ss_pred             --EEE-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCCc
Confidence              443 6789999999876543 333332  3457899999999999999999999 99999999999988887  8889


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          306 IYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      |.+++|+|||++|++|+.|++|+||+
T Consensus       329 v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          329 VSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-34  Score=253.57  Aligned_cols=254  Identities=15%  Similarity=0.290  Sum_probs=213.5

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|++++|+|+|++|++|+ |+.|++|++..++..  ..+. .|...+.++.|++++..+++++.|     +.
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----~~   88 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS-GHKLGISDVAWSSDSNLLVSASDD-----KT   88 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--hhhc-cCCCceEEEEEcCCCCEEEEECCC-----CE
Confidence            34568999999999999999999999 888999998766544  4454 788899999999999999999888     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      |++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+.+++|+++++.  +++
T Consensus        89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~  166 (312)
T 4ery_A           89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--IVS  166 (312)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCE--EEE
Confidence            9999999999999998 999999999999999888   5899999999999999999999999999999999984  333


Q ss_pred             ecCCCCeEEEEecCc-ceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          234 PGLQKGQVRVEHYAS-KRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~-~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                       |+.||.|++|+... +.+..+ ..+...+..++|+|++++|++++.||. |++||+++++.+..+..+..........|
T Consensus       167 -~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          167 -SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             -EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             -EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence             67899999988765 334443 456678999999999999999999999 99999999999988876322222223344


Q ss_pred             e-cCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          312 S-SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       312 s-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      + +++.+|++|+.||.|++||+++++.......+
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            4 67889999999999999999988765544433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-34  Score=258.57  Aligned_cols=241  Identities=32%  Similarity=0.531  Sum_probs=197.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ...|...|++++|+|||++|++|++++++||++++.+......+   +...+..+.++.+.+++++++ |     +.|++
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-d-----~~v~i   85 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGV-K-----EVVHI   85 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSS-T-----TEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECC-c-----cEEEE
Confidence            36789999999999999999999988999999987665544332   345566666666666555554 3     89999


Q ss_pred             EeCCCCcEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEecCCCeEEEEee-cCCC
Q 017642          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQK  238 (368)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-g~~d  238 (368)
                      ||+.+++.+..+.+...|.+++++++...++.|+.|++||+.++ +.+..+..   +...+++++  ..  ++++ |+.|
T Consensus        86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~--la~~sg~~~  158 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GL--LVYSNEFNL  158 (355)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TE--EEEEESSCT
T ss_pred             EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cE--EEEeCCCcC
Confidence            99999999999998899999999999877779999999999988 66666654   455667777  33  4443 7899


Q ss_pred             CeEEEEecCcce-----------------eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          239 GQVRVEHYASKR-----------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       239 g~i~i~~~~~~~-----------------~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      |.|++|+.....                 +..+.+|...|++++|+|+|++|++|+.|++.|+|||+++++++..+..+.
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~  238 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL  238 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            999999887643                 677899999999999999999999999999339999999999999998443


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |...|.+++|+|+|++|++++.|++|+|||++.+..
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~  274 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD  274 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence            678999999999999999999999999999987643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-34  Score=253.90  Aligned_cols=243  Identities=13%  Similarity=0.208  Sum_probs=196.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEc-ccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....|.+.|++++|+++  +|++|+ |+.|+||++..........+ ...|...+.+++|++++..+++++.|     +.
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~~   81 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----ST   81 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----Cc
Confidence            45689999999999988  889888 88899999986544333444 21388899999999999999999988     99


Q ss_pred             EEEEeCCC-------CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC----CeEEEEEeccCCCeeEEEE
Q 017642          158 VMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD----LKLLHQIETIANPKGLCAV  222 (368)
Q Consensus       158 i~vwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~  222 (368)
                      |++||+..       .+.+..+. |...|.+++|+|++.+++   .|+.|++||++.    .+++..+..|...|.+++|
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            99999853       34566676 999999999999999888   599999999943    3567788899999999999


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCc---ceeeeeeccCcceEEEEECCC--CCEEEEEeCCCcEEEEEECCCC------
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDG------  291 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~---~~~~~~~~~~~~i~~v~~sp~--g~~l~s~~~dg~~i~iwd~~~~------  291 (368)
                      +|+++.  |++ |+.|+.|++|+...   ..+..+.+|...|.+++|+|+  +.+|++|+.|+. |+|||+..+      
T Consensus       162 ~p~~~~--l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          162 HPSEAL--LAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             CSSSSE--EEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSCE
T ss_pred             CCCCCE--EEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccccc
Confidence            999874  443 77899999997653   466778899999999999998  679999999999 999998764      


Q ss_pred             --ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          292 --TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       292 --~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                        .....+.. .|...|.+++|++++ +|++++.||.|+|||+.++
T Consensus       238 ~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          238 EWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             eeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence              23333332 267899999999665 7899999999999999765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.4e-34  Score=251.81  Aligned_cols=250  Identities=17%  Similarity=0.193  Sum_probs=205.8

Q ss_pred             cccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      +..+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+..   ....+. +|...+.++.|++++..+++++.|    
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d----  107 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWD----  107 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEccc----
Confidence            45689999999999998 68999999 888999999865532   334554 788899999999999999999988    


Q ss_pred             CCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE-EEEeccCCCeeEEEEecCCCeE
Q 017642          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                       +.|++|+........... +...+..+.+++++.+++   .|+.+++||+...... .....|...+..++|++++...
T Consensus       108 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          108 -GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             -ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence             999999999988887777 788889999999988877   5899999999766543 3345678889999999988776


Q ss_pred             EEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe---------
Q 017642          230 VLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---------  299 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~---------  299 (368)
                      ++++ ++.|+.|++|+... +.+..+.+|...|++++|+|++++|++|+.||. |+|||+++++.+..+..         
T Consensus       187 ~~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~  264 (340)
T 4aow_A          187 IIVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCF  264 (340)
T ss_dssp             EEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             EEEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeec
Confidence            6665 67899999988765 556678899999999999999999999999999 99999987655443321         


Q ss_pred             --------------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          300 --------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       300 --------------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                                                            ..|...|++++|+|||++|++|+.||.|+|||+++|++
T Consensus       265 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          265 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             CSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             CCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence                                                  12456788999999999999999999999999988764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.3e-34  Score=255.33  Aligned_cols=194  Identities=13%  Similarity=0.110  Sum_probs=160.2

Q ss_pred             EEEEEEeCCeEE--EEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE
Q 017642          132 VVEMLFRCNILA--LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL  207 (368)
Q Consensus       132 ~~~~~~~~~~~~--~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~  207 (368)
                      +..++|+|++..  +++++.|     +.|+|||+.+++++..+.|...|.+++|+|||++++  .++.+.+|+..+++.+
T Consensus       136 ~~~v~fSpDg~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI  210 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred             EEEEEEcCCCCEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence            446778887754  4567777     999999999999999999999999999999999998  6888999998888765


Q ss_pred             EEE--eccCCCeeEEEEecCCCeEEEEeecCCCC----eEEEEecCcce-----eeeeeccCcceEEEEECCCCCEEEEE
Q 017642          208 HQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATS  276 (368)
Q Consensus       208 ~~~--~~~~~~v~~~~~~~~~~~~~l~~~g~~dg----~i~i~~~~~~~-----~~~~~~~~~~i~~v~~sp~g~~l~s~  276 (368)
                      ...  ..|...+.+++|+|++..++.+   +.|+    .+++|+.....     ...+.+|...|++++|+|||++||+|
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~---s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAA---SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEE---EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEE---ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence            433  4577789999999999864433   2343    45556654422     34567899999999999999999999


Q ss_pred             eCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       277 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +.|+. |+|||+++++++..+..+ |...|++|+|+|||++|++++.|++|+|||+...
T Consensus       288 s~D~~-V~iwd~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          288 SNDNS-IALVKLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ETTSC-EEEEETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             cCCCE-EEEEECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999 999999999999876433 8899999999999999999999999999999543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-34  Score=250.68  Aligned_cols=243  Identities=13%  Similarity=0.180  Sum_probs=203.4

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|...|.+++|++++++|++|+ |+.|++||+.+++..  ..+. .|...+.++.|++++..+++++.|     +.|
T Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~sgs~D-----~~v  121 (304)
T 2ynn_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--VDFE-AHPDYIRSIAVHPTKPYVLSGSDD-----LTV  121 (304)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----SCE
T ss_pred             EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE--EEEe-CCCCcEEEEEEcCCCCEEEEECCC-----CeE
Confidence            4457888999999999999999999 888999999877655  4454 788999999999999999999988     999


Q ss_pred             EEEeCCCCc-EEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEE
Q 017642          159 MIWDDHQSR-CIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       159 ~vwd~~~~~-~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ++||++++. ....+. |...|.+++|+| ++.+++   .|+.|++||+++++....+. .+...+..+.+++.++..++
T Consensus       122 ~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (304)
T 2ynn_A          122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (304)
T ss_dssp             EEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEE
T ss_pred             EEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEE
Confidence            999998874 445566 999999999999 566666   59999999998877665554 45577888999885544345


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      ++ |+.|+.|++|+... +.+..+.+|...|.+++|+|++++|++|+.||. |+|||+.+++.+..+..  |...+.+++
T Consensus       202 ~s-~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~--~~~~~~~~~  277 (304)
T 2ynn_A          202 IT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIA  277 (304)
T ss_dssp             EE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECC--SSSSEEEEE
T ss_pred             EE-EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccC--CCccEEEEE
Confidence            54 77899999988765 567788999999999999999999999999999 99999999999999887  677899999


Q ss_pred             EecCCC--EEEEEeCCCeEEEEEccCC
Q 017642          311 FSSNAQ--WLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       311 ~sp~~~--~l~s~s~dg~i~iwd~~~~  335 (368)
                      |+|++.  ++++|+.|| +.+|++.+.
T Consensus       278 ~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          278 THPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             ECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             ECCCCCceEEEEecCCc-eEEEEeccC
Confidence            999885  577776555 888988653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-34  Score=255.82  Aligned_cols=248  Identities=14%  Similarity=0.207  Sum_probs=203.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY  153 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~  153 (368)
                      ....+|.+.|++++|+|++++|++|+ |+.|+||++......  ....+. .|...+.++.|++  ++..+++++.|   
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~d---   80 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYD---   80 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence            45578999999999999999999999 888999999865432  334454 7888999999998  47788888877   


Q ss_pred             CCCcEEEEeCCCC---------cEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCeEEEEEe-------
Q 017642          154 PLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIE-------  211 (368)
Q Consensus       154 ~~~~i~vwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~~~~~~~-------  211 (368)
                        +.|++||+.++         +.+..+. |...|.+++|+|+  +.+++   .|+.|++||+++++.+..+.       
T Consensus        81 --g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           81 --KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             --SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             --CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence              99999999887         5566676 8999999999999  88777   58999999998876543332       


Q ss_pred             ------ccCCCeeEEEEecC---CCeEEEEeecCCCCeEEEEecCcce---eeeeeccCcceEEEEECCCC----CEEEE
Q 017642          212 ------TIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDG----QLLAT  275 (368)
Q Consensus       212 ------~~~~~v~~~~~~~~---~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~~~~~i~~v~~sp~g----~~l~s  275 (368)
                            .+...+.+++|+|+   ++.  +++ ++.++.+.+|......   +..+.+|...|++++|+|++    ++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEK--LAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCE--EEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cccccCCcccceeEEEeccCCCCCcE--EEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence                  46678899999997   553  333 5578888776555433   55677899999999999998    89999


Q ss_pred             EeCCCcEEEEEECCCC----------------------------------------------ceeEeeEeccCcccEEEE
Q 017642          276 SSTKGTLVRIFNTLDG----------------------------------------------TLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       276 ~~~dg~~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~l  309 (368)
                      ++.||. |++||++.+                                              +.+..+..  |...|.++
T Consensus       236 ~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~  312 (351)
T 3f3f_A          236 GCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSV  312 (351)
T ss_dssp             EETTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEE
T ss_pred             EcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEE
Confidence            999999 999999875                                              45555555  77899999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +|+|++++|++++.||.|+|||+.+++..
T Consensus       313 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          313 SWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             EEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            99999999999999999999999987653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-34  Score=271.20  Aligned_cols=235  Identities=20%  Similarity=0.338  Sum_probs=208.6

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|+|++|++|+ |+.|++|+... +.  ...+. .|...+.+++|++++..+++++.|     +.
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~--~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d-----~~  408 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL--LQTLT-GHSSSVRGVAFSPDGQTIASASDD-----KT  408 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CE--EEEEE-CCSSCEEEEEECTTSSCEEEEETT-----SE
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CE--EEEec-CCCCCeEEEEECCCCCEEEEEeCC-----CE
Confidence            34567899999999999999999999 77799999542 22  23444 788889999999999999998887     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      |++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||+ +++.+..+..|...+.+++|+|+++.  +++
T Consensus       409 v~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~--las  484 (577)
T 2ymu_A          409 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT--IAS  484 (577)
T ss_dssp             EEEEC-TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCE--EEE
T ss_pred             EEEEe-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCE--EEE
Confidence            99999 4677777777 999999999999999888   5899999996 67788888999999999999999985  443


Q ss_pred             ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                       ++.|+.|++|+.+++.+..+.+|...|++++|+|+|++|++++.||. |+|||. +++++..+.+  |.+.|++++|+|
T Consensus       485 -~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~-~~~~~~~~~~--h~~~v~~~~fs~  559 (577)
T 2ymu_A          485 -ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVWGVAFSP  559 (577)
T ss_dssp             -EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred             -EeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC-CCCEEEEEcC--CCCCEEEEEEcC
Confidence             66899999999999999999999999999999999999999999999 999995 7888889987  889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEE
Q 017642          314 NAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd  331 (368)
                      ||++|++++.|++|++||
T Consensus       560 dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          560 DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEeCCCEEEEeC
Confidence            999999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.5e-34  Score=253.91  Aligned_cols=244  Identities=13%  Similarity=0.184  Sum_probs=196.9

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|++.+|++|+ |+.|++||+.+++..  ..+. .|...+.++.|++++..+++++.|     +.
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~--~~~~-~h~~~v~~v~~sp~~~~l~s~~~d-----~~  141 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--KRFV-GHQSEVYSVAFSPDNRQILSAGAE-----RE  141 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE--EEEE-CCCSCEEEEEECSSTTEEEEEETT-----SC
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE--EEEc-CCCCcEEEEEECCCCCEEEEEcCC-----CE
Confidence            34568999999999999999999999 888999999876654  4454 788899999999999888998888     99


Q ss_pred             EEEEeCCCCcEEEEE---ecCCceeEEEEeeCc----------cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEE
Q 017642          158 VMIWDDHQSRCIGEL---SFRSEVRSVKLRRDR----------IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCA  221 (368)
Q Consensus       158 i~vwd~~~~~~~~~~---~~~~~v~~~~~~~~~----------~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  221 (368)
                      |++||+.........   .|...|.+++|+|++          .+++   .|+.|++|| ..++....+..|...+.+++
T Consensus       142 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~  220 (343)
T 2xzm_R          142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLS  220 (343)
T ss_dssp             EEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEE
T ss_pred             EEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEE
Confidence            999998744333222   277889999999986          4555   599999999 45677788889999999999


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE--eeE
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EVR  298 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~--~~~  298 (368)
                      |+|+++.  |++ |+.||.|++|+. ..........+...|.+++|+|++.+|+++ .|+. |++||+.+++...  .+.
T Consensus       221 ~s~~g~~--l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~  295 (343)
T 2xzm_R          221 ISPNGKY--IAT-GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIE  295 (343)
T ss_dssp             ECTTSSE--EEE-EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECC
T ss_pred             ECCCCCE--EEE-EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEee
Confidence            9999985  443 778999999997 333333333456679999999999887755 5777 9999998876543  333


Q ss_pred             e---------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          299 R---------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       299 ~---------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .         ..|...|.+++|+|+|++|++|+.||.|++|+++++.
T Consensus       296 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             cCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            1         0266789999999999999999999999999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-34  Score=255.67  Aligned_cols=247  Identities=15%  Similarity=0.160  Sum_probs=204.8

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL  155 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~  155 (368)
                      .....|...|++++|+|++++|++|+ |+.|+||++..........+. .|...+.++.|+++  +..+++++.|     
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d-----   78 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----   78 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence            45678999999999999999999998 888999999865555556665 78889999999866  7788888887     


Q ss_pred             CcEEEEeCCCCc--EEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCe--EEEEEeccCCCeeEEEEec-
Q 017642          156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQ-  224 (368)
Q Consensus       156 ~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-  224 (368)
                      +.|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++++.  ....+..|...+.+++|+| 
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            999999999987  566666 8899999999999  77777   58999999998773  3445677889999999999 


Q ss_pred             ------------CCCeEEEEeecCCCCeEEEEecCcc-----eeeeeeccCcceEEEEECCC---CCEEEEEeCCCcEEE
Q 017642          225 ------------GVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR  284 (368)
Q Consensus       225 ------------~~~~~~l~~~g~~dg~i~i~~~~~~-----~~~~~~~~~~~i~~v~~sp~---g~~l~s~~~dg~~i~  284 (368)
                                  ++..  +++ |+.||.|++|+....     ....+.+|...|.+++|+|+   +++|++++.||. |+
T Consensus       159 ~~~~~~~~~~~~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~  234 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRK--FVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI  234 (379)
T ss_dssp             C----------CTTCE--EEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EE
T ss_pred             cccccccccCCCCCCE--EEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EE
Confidence                        4653  443 668999999887542     34567789999999999999   899999999999 99


Q ss_pred             EEECCCCc---eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          285 IFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       285 iwd~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |||+.+++   ....+....|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus       235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            99999874   2222222236778999999999999999999999999999854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-33  Score=255.37  Aligned_cols=248  Identities=13%  Similarity=0.170  Sum_probs=203.5

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ..|...|.+++|+|++++|++|+ |+.|++||+.+.+..  ..+. .|...+.++.|+++  .+++++.|     +.|++
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~--~l~~~~~d-----g~i~i  200 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RTMA-GHQARVGCLSWNRH--VLSSGSRS-----GAIHH  200 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEEETT--EEEEEETT-----SEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EEec-CCCCceEEEEECCC--EEEEEcCC-----CCEEE
Confidence            34889999999999999999999 888999999876654  4454 78888999999765  45555665     99999


Q ss_pred             EeCC-CCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          161 WDDH-QSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ||++ .+..+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+.+++|+|++..+++..+|
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence            9998 456677777 999999999999998888   58999999999999999998999999999999999876654435


Q ss_pred             CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEE--EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s--~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      +.|+.|++|+...........+...|.+++|+|++++|++  |+.||. |+|||+.+++.........|...|.+++|+|
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence            5899999998766444333356778999999999999998  448999 9999999876665543333788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          314 NAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +|++|++++.||.|++|++.+++....
T Consensus       360 dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          360 DGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             TSSEEEEECTTSEEEEEECCC------
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccccc
Confidence            999999999999999999998876643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.5e-33  Score=246.08  Aligned_cols=237  Identities=11%  Similarity=0.193  Sum_probs=209.3

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .|...|.+++|+|++++|++++ |+.|++||+...+......+. .+...+.++.|++++..+++++.|     +.|++|
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~  168 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD-----GNIAVW  168 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT-----SCEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCC-----CcEEEE
Confidence            6889999999999999999998 788999999887654445554 778889999999999888888877     999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      |+++++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+. +...+.+++|+|+++.+  ++ ++.
T Consensus       169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l--~~-~~~  244 (337)
T 1gxr_A          169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWL--AV-GME  244 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEE--EE-EET
T ss_pred             eCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEE--EE-EcC
Confidence            999999999988 899999999999998887   58999999999999888774 67789999999999853  33 567


Q ss_pred             CCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCE
Q 017642          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (368)
Q Consensus       238 dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  317 (368)
                      ++.|++|+........+..|...|.+++|+|++++|++++.||. |++||+.+++.+....   |...|.+++|+|++++
T Consensus       245 ~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~  320 (337)
T 1gxr_A          245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKY  320 (337)
T ss_dssp             TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCE
T ss_pred             CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEec---CCCcEEEEEECCCCCE
Confidence            99999999888777788899999999999999999999999999 9999999998885544   6778999999999999


Q ss_pred             EEEEeCCCeEEEEEcc
Q 017642          318 LAVSSDKGTVHVFNLK  333 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~  333 (368)
                      |++++.||.|++|++.
T Consensus       321 l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          321 IVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSCEEEEEEE
T ss_pred             EEEecCCCeEEEEEEe
Confidence            9999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.6e-34  Score=271.66  Aligned_cols=242  Identities=14%  Similarity=0.178  Sum_probs=205.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      .+.+.+.+++|+|||++|+++.++.|+||++.+.+..  ..+. +|...+.+++|+|++.++++++.|     ++|+|||
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~--~~~~-~h~~~v~~~~~spdg~~lasg~~d-----~~v~lWd   87 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYT-EHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWD   87 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             cccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccC--eEec-CCCCceEEEEECCCCcEEEEEeCC-----CCEEEeE
Confidence            3456778899999999999999889999999765554  4454 788899999999999999999988     9999999


Q ss_pred             CCCCc--EEEEEe-cCCceeEEEEeeCccEEE--eC-----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          163 DHQSR--CIGELS-FRSEVRSVKLRRDRIIVV--LE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       163 ~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~--~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +.+++  ....+. |.+.|.+++|+|+++.++  .+     +.|++||  .++....+.+|...|.+++|+|++... ++
T Consensus        88 ~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~-l~  164 (611)
T 1nr0_A           88 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFR-II  164 (611)
T ss_dssp             SSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCE-EE
T ss_pred             CCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeE-EE
Confidence            87543  445566 899999999999999888  22     3677777  566677788999999999999998753 33


Q ss_pred             eecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-----cCcccE
Q 017642          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----ADRAEI  306 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----~~~~~v  306 (368)
                       +|+.|+.|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |+|||+.+++.+..+...     .|.+.|
T Consensus       165 -s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          165 -SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             -EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             -EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCE
Confidence             377899999998654 556678899999999999999999999999999 999999999988877421     278899


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+++|+|+|++|++++.|++|+|||+.+++.
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            9999999999999999999999999987654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=245.77  Aligned_cols=239  Identities=13%  Similarity=0.138  Sum_probs=202.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      +++|+||+++ +||+|.|+.|+|||+++++......+. .|...|.++.|++++..+++++.|     +.|++||+++++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEec-CCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCce
Confidence            4679999886 889888999999999988776554553 788889999999999999999988     999999999887


Q ss_pred             EEEEEe------------------------------------------cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642          168 CIGELS------------------------------------------FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (368)
Q Consensus       168 ~~~~~~------------------------------------------~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~  202 (368)
                      ++..+.                                          |...+..+.+.+++.+++   .|+.|++||++
T Consensus       101 ~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            665543                                          345566777778877777   58999999998


Q ss_pred             CCeE----EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe-
Q 017642          203 DLKL----LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-  277 (368)
Q Consensus       203 ~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~-  277 (368)
                      +++.    ......+...+..+.+++++..++...+|+.++.|++|+...........+...+..+.|++++..+++++ 
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEE
Confidence            7653    34455677889999999998887766678899999999988877777778888999999999999777654 


Q ss_pred             -CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          278 -TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       278 -~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                       .|+. |+|||+.+++++.++.+  |.+.|++|+|+|||++|++|+.||+|+|||+.+..
T Consensus       261 ~~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          261 FAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTTCC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             cCCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence             7899 99999999999999988  88999999999999999999999999999997653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-33  Score=254.09  Aligned_cols=246  Identities=13%  Similarity=0.167  Sum_probs=205.9

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ..|...|++|+|+|+|++|++|+ |+.|+|||+++++..  ..+. .|...+.++.+++.  .+++++.|     +.+++
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~-~h~~~v~~~s~~~~--~l~sgs~d-----~~i~~  213 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNSY--ILSSGSRS-----GHIHH  213 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEETT--EEEEEETT-----SEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--EEEe-CCCCceEEEeeCCC--EEEEEeCC-----CceeE
Confidence            46778899999999999999999 888999999876655  4454 78888888888765  45666666     99999


Q ss_pred             EeCCCC-cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe----EEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          161 WDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       161 wd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ||.... ..+..+. |...+..+.+++++.+++   .|+.|++||+.+++    .+.....+...|.+++|+|++..++.
T Consensus       214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            998765 4556666 999999999999999888   58999999998764    34566778899999999999988776


Q ss_pred             EeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe--CCCcEEEEEECCCCceeEeeEeccCcccEEEE
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (368)
                      ..+|+.|+.|++|+...........+...+.++.|+++++.|++++  .|+. |+|||+.+++++.++.+  |.+.|++|
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~l  370 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSL  370 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             EEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEEE
Confidence            6668899999999887655544444556789999999999887765  7899 99999999999999988  88999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +|+|||++|++|+.|++|+|||+.+..+...
T Consensus       371 ~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          371 TMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            9999999999999999999999987655443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-33  Score=247.90  Aligned_cols=247  Identities=10%  Similarity=0.155  Sum_probs=206.5

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      .......|...|++++|+|+|++|++|+ |+.|++||+.+.+..  ..+. .|...+.++.|++++..+++++.|     
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----   95 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLD-GHTGTIWSIDVDCFTKYCVTGSAD-----   95 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--hhhh-hcCCcEEEEEEcCCCCEEEEEeCC-----
Confidence            3445678999999999999999999998 788999998876655  4554 788899999999999888888887     


Q ss_pred             CcEEEEeCCCCcEEEEEecCC-----------------------------------------------------------
Q 017642          156 NKVMIWDDHQSRCIGELSFRS-----------------------------------------------------------  176 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~-----------------------------------------------------------  176 (368)
                      +.|++||+.+++.+..+.+..                                                           
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            999999999887776665444                                                           


Q ss_pred             -ceeEEEEeeCccEEE---eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee
Q 017642          177 -EVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (368)
Q Consensus       177 -~v~~~~~~~~~~~l~---~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~  251 (368)
                       .+.+++|++++.+++   .|+.|++||+++ ++.+..+..|...+.+++|+++++.+  ++ ++.|+.|++|+......
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~-~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYF--IT-SSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEE--EE-EETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEE--EE-ecCCceEEEEECCCCce
Confidence             445555555555555   478899999988 78888888899999999999999853  33 56899999998776544


Q ss_pred             eeeeccCcceEEEEECCCCCEEEEEeCCC--------------cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCE
Q 017642          252 KFIMAHDSRIACFALTQDGQLLATSSTKG--------------TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW  317 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~dg--------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  317 (368)
                      .....+...+.+++|+|+++++++++.++              . |++||+.+++.+..+..  |...|.+++|+|++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~  329 (369)
T 3zwl_B          253 LKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARFYHKIFEEEIGRVQG--HFGPLNTVAISPQGTS  329 (369)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSE
T ss_pred             eeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEEEecCCCcchhheec--ccCcEEEEEECCCCCE
Confidence            44444788999999999999999999988              7 99999999999999987  7889999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCCC
Q 017642          318 LAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       318 l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |++++.||.|+||+++++..
T Consensus       330 l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          330 YASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             EEEEETTSEEEEEEECHHHH
T ss_pred             EEEEcCCCeEEEEECccccc
Confidence            99999999999999987543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2e-33  Score=251.21  Aligned_cols=242  Identities=12%  Similarity=0.086  Sum_probs=207.5

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|...|++++|+|++++|++++ |+.|++|++++.+......+. .|...+.++.|++++..+++++.|     +.|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d-----g~i   76 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNA   76 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCC-----CeE
Confidence            3456899999999999999999997 888999999877633445564 788899999999999888888887     999


Q ss_pred             EEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE---EEEE-eccCCCeeEEEEecCCCe
Q 017642          159 MIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL---LHQI-ETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~  228 (368)
                      ++||+.+++....+.   |...|.+++|++++.+++   .|+.|++||++.++.   ...+ ..|...+.+++|+++++.
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            999999887655543   888999999999998888   589999999987652   3333 567889999999999874


Q ss_pred             EEEEeecCCCCeEEEEec-------------------CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          229 LVLVCPGLQKGQVRVEHY-------------------ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~-------------------~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                        +++ |+.||.|++|+.                   ....+..+..|...|.+++|+|++++|++++.||. |++||++
T Consensus       157 --l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~  232 (372)
T 1k8k_C          157 --LAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADAD  232 (372)
T ss_dssp             --EEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGG
T ss_pred             --EEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECC
Confidence              343 668999999984                   24666777889999999999999999999999999 9999999


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +++.+..+..  |...|.+++|+|++++|+++ .|+.|++|++.+
T Consensus       233 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          233 KKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             GTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999987  77899999999999988887 899999999988

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.4e-33  Score=243.61  Aligned_cols=245  Identities=13%  Similarity=0.167  Sum_probs=208.5

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ...|...|++++|+|++++|++++|+.|++|++...+..   ..... ..+...+.++.|++++..+++++.|     +.
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-----~~  120 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEA-----ST  120 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESS-----SE
T ss_pred             eccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcCCCCEEEEEcCC-----Cc
Confidence            347999999999999999999999888999999865432   11122 2577889999999999888888877     99


Q ss_pred             EEEEeCCCCc--EEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          158 VMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       158 i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |++||+.+++  ....+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+.+++|+++++.  +
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l  198 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK--L  198 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--E
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCE--E
Confidence            9999999887  455555 888999999999998877   5899999999999999999999999999999999975  3


Q ss_pred             EeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      ++ ++.||.|++|+...........+...+.+++|+|++++|++++.++. |++||+.+++.. .+..  |...|.+++|
T Consensus       199 ~~-~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~~--~~~~v~~~~~  273 (337)
T 1gxr_A          199 WT-GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLHL--HESCVLSLKF  273 (337)
T ss_dssp             EE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EECC--CSSCEEEEEE
T ss_pred             EE-EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEcC--CccceeEEEE
Confidence            33 56899999999876555555568889999999999999999999999 999999988765 4444  7889999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          312 SSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +|++++|++++.||.|++||+.+++..
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            999999999999999999999887654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-32  Score=240.39  Aligned_cols=241  Identities=17%  Similarity=0.265  Sum_probs=204.7

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|++++|++|+ |+.|++||+.+.+..  ..+. .|...+.++.|++++..+++++.|     +.
T Consensus        59 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----~~  130 (312)
T 4ery_A           59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL--KTLK-GHSNYVFCCNFNPQSNLIVSGSFD-----ES  130 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----SC
T ss_pred             hhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE--EEEc-CCCCCEEEEEEcCCCCEEEEEeCC-----Cc
Confidence            34567999999999999999999999 888999999876654  4454 788889999999999999999888     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      |++||+++++.+..+. |...|.+++|++++.+++   .|+.|++||+++++.+..+. .+...+..++|+|+++.  ++
T Consensus       131 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~  208 (312)
T 4ery_A          131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY--IL  208 (312)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE--EE
T ss_pred             EEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE--EE
Confidence            9999999999999888 889999999999998887   59999999999998877764 45567889999999985  33


Q ss_pred             eecCCCCeEEEEecCc-ceeeeeeccCcceE---EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIA---CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~---~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                      + ++.|+.|++|+... +.+..+.+|...+.   .....+++.+|++|+.||. |++||+.+++.+..+.+  |...|.+
T Consensus       209 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~  284 (312)
T 4ery_A          209 A-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQG--HTDVVIS  284 (312)
T ss_dssp             E-EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             E-EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhc--cCCcEEE
Confidence            3 56899999988765 45566777765432   2333467889999999999 99999999999999987  7889999


Q ss_pred             EEEecCCCEEEEEe--CCCeEEEEEcc
Q 017642          309 LAFSSNAQWLAVSS--DKGTVHVFNLK  333 (368)
Q Consensus       309 l~~sp~~~~l~s~s--~dg~i~iwd~~  333 (368)
                      ++|+|++.+|++++  .|++|++|+.+
T Consensus       285 ~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          285 TACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999987  69999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.8e-34  Score=262.85  Aligned_cols=247  Identities=13%  Similarity=0.103  Sum_probs=191.8

Q ss_pred             ccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCc
Q 017642           81 SSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNK  157 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~  157 (368)
                      ...|...|+||+|+| ++.+||+|+ |+.|+|||+...+......+. +|...|.++.|+| ++..|++++.|     ++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D-----~~  188 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSME-----GT  188 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSS-----SC
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCC-----CE
Confidence            456888999999999 567899999 888999999877766555554 7888999999997 57788888888     99


Q ss_pred             EEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          158 VMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |++||++++.......   +...+.+++|++++.+++   .||.|++||++ ++.+..+..|...|.+++|+|+++.++ 
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~-  266 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL-  266 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE-
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE-
Confidence            9999998765443333   344678999999999888   58999999986 456677888999999999999988643 


Q ss_pred             EeecCCCCeEEEEecCcce----eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE---------
Q 017642          232 VCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR---------  298 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~---------  298 (368)
                      + +|+.|+.|++|+.....    .....+|...|++++|+|+|++|++++.||. |+|||+.+++....+.         
T Consensus       267 ~-s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~  344 (435)
T 4e54_B          267 A-TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQH  344 (435)
T ss_dssp             E-EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSS
T ss_pred             E-EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEeccccccccc
Confidence            3 36789999999876422    2334679999999999999999999999999 9999987643221110         


Q ss_pred             --------------------------------------------------eccCcccEEEE-EEecCCCEEEEEeCCCeE
Q 017642          299 --------------------------------------------------RGADRAEIYSL-AFSSNAQWLAVSSDKGTV  327 (368)
Q Consensus       299 --------------------------------------------------~~~~~~~v~~l-~~sp~~~~l~s~s~dg~i  327 (368)
                                                                        ...|...|.++ +|+|+|++|++|+ |++|
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i  423 (435)
T 4e54_B          345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHI  423 (435)
T ss_dssp             SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEE
T ss_pred             ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE
Confidence                                                              01134456666 6999999999876 7899


Q ss_pred             EEEEccCCCCC
Q 017642          328 HVFNLKVNSGS  338 (368)
Q Consensus       328 ~iwd~~~~~~~  338 (368)
                      +||++++++..
T Consensus       424 ~iW~~~~gk~r  434 (435)
T 4e54_B          424 LIWSQQEARTR  434 (435)
T ss_dssp             EECCCC-----
T ss_pred             EEEECCcCeee
Confidence            99999988764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=249.31  Aligned_cols=255  Identities=13%  Similarity=0.139  Sum_probs=205.8

Q ss_pred             ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcc----------cCCceeEEEEEEeC-CeEEEE
Q 017642           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----------RGGGIGVVEMLFRC-NILALV  145 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~  145 (368)
                      .....|.+.|++++|+| ++++|++|+ |+.|++|++............          ..|...+.++.|++ +...++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            34567999999999999 999999999 888999999876654332211          14788899999998 666777


Q ss_pred             ecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc---cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642          146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVV---LEQKIFVYNFADLKLLHQIETIANPKGL  219 (368)
Q Consensus       146 s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~  219 (368)
                      +++.|     +.|++||+.+++.+..+.+...+.++.+.+.+   .+++   .|+.|++||+++++.+..+..|...+.+
T Consensus       117 s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          117 SSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             EEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             EEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            77776     99999999999999999999999999999854   3666   5899999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCcc--eeeee---------------eccCcceEEEEECCCCCEEEEEeCCCcE
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFI---------------MAHDSRIACFALTQDGQLLATSSTKGTL  282 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~---------------~~~~~~i~~v~~sp~g~~l~s~~~dg~~  282 (368)
                      ++|+|+++.+++  +|+.||.|++|+....  ....+               ..|...|.+++|+|++++|++++.||. 
T Consensus       192 ~~~~~~~~~ll~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  268 (408)
T 4a11_B          192 VSWSPRYDYILA--TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-  268 (408)
T ss_dssp             EEECSSCTTEEE--EEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             EEECCCCCcEEE--EEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-
Confidence            999999986333  3668999999987542  22222               578899999999999999999999999 


Q ss_pred             EEEEECCCCc-----------------------------------------------eeEeeEeccCcccEEEEEEecCC
Q 017642          283 VRIFNTLDGT-----------------------------------------------LLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       283 i~iwd~~~~~-----------------------------------------------~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      |++||+.+++                                               .+..+..  |...|.+++|+|++
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~  346 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNF  346 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTT
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCC
Confidence            9999987654                                               3333444  77899999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642          316 QWLAVSSDKGTVHVFNLKVNSGSARSEP  343 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~  343 (368)
                      ++|++++.||.|++||+++.+..+....
T Consensus       347 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          347 QELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             TEEEEEETTSCEEEEEECC---------
T ss_pred             CEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence            9999999999999999999887765443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.7e-33  Score=262.08  Aligned_cols=236  Identities=21%  Similarity=0.330  Sum_probs=209.4

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|++++|++++ |+.|++||++....   ..+. .+...+.++++++++..+++++.|     +.
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-~~~~~v~~~~~s~~g~~l~~~~~d-----g~  367 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLT-GHSSSVWGVAFSPDGQTIASASDD-----KT  367 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee---EEEe-CCCCCEEEEEECCCCCEEEEEeCC-----CE
Confidence            34567999999999999999999998 77899999764322   3343 678889999999999999998887     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      |++|| .+++.+..+. |...|.+++|+|++++++   .|+.|++||. +++.+..+..|...+.+++|+|+++.  +++
T Consensus       368 v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~  443 (577)
T 2ymu_A          368 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT--IAS  443 (577)
T ss_dssp             EEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE--EEE
T ss_pred             EEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE--EEE
Confidence            99999 4677777877 999999999999999888   5899999995 67788889999999999999999985  343


Q ss_pred             ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                       ++.|+.|++|+.+++.+..+.+|...|++++|+|++++|++++.|+. |+||| .+++.+..+.+  |...|++++|+|
T Consensus       444 -~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~-~~~~~~~~~~~--h~~~v~~l~~s~  518 (577)
T 2ymu_A          444 -ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTG--HSSSVRGVAFSP  518 (577)
T ss_dssp             -EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEE-TTSCEEEEEEC--CSSCEEEEEECT
T ss_pred             -EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEc-CCCCEEEEEeC--CCCCEEEEEEcC
Confidence             66899999999999999999999999999999999999999999999 99999 47888888887  788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEc
Q 017642          314 NAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~  332 (368)
                      ||++|++++.||.|+|||+
T Consensus       519 dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          519 DGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             TSSCEEEEETTSEEEEECT
T ss_pred             CCCEEEEEECcCEEEEEeC
Confidence            9999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3e-32  Score=245.07  Aligned_cols=244  Identities=14%  Similarity=0.140  Sum_probs=197.2

Q ss_pred             ccccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL  155 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~  155 (368)
                      .....|...|++++|+|++ ++|++|+ |+.|+|||+...+......+. +|...+.++.|++ ++..+++++.|     
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----  140 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR-----  140 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT-----
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC-----
Confidence            3456899999999999999 8999999 888999999877666444432 6889999999999 67888888887     


Q ss_pred             CcEEEEeCCCCcEEEEEe----cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          156 NKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      +.|++||+.. +.+..+.    +...|.+++|+|++.+++   .|+.|++||+ +++.+..+..|...+.+++|+|+++.
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence            9999999986 4555554    347899999999999888   5899999999 57788889999999999999999985


Q ss_pred             EEEEeecCCCCeEEEEecCc----ceeeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCce----------
Q 017642          229 LVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTL----------  293 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~----------  293 (368)
                      ++ + +|+.|+.|++|+...    ........|...|.+++|+| ++++|++++.|+. |+|||+++++.          
T Consensus       219 ~l-~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          219 LM-A-TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             EE-E-EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBC
T ss_pred             EE-E-EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccc
Confidence            33 3 366899999998875    33333347999999999999 9999999998888 88888754432          


Q ss_pred             -----------------------------------------------eEeeEeccCcccEEEEEEecCCCEEEEEeCCCe
Q 017642          294 -----------------------------------------------LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (368)
Q Consensus       294 -----------------------------------------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  326 (368)
                                                                     +..+..+.+...+..++|+|++++|++++ ||.
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence                                                           22333222445677789999999999997 999


Q ss_pred             EEEEEccC
Q 017642          327 VHVFNLKV  334 (368)
Q Consensus       327 i~iwd~~~  334 (368)
                      |+|||+++
T Consensus       375 i~iw~~~~  382 (383)
T 3ei3_B          375 ILIWNRED  382 (383)
T ss_dssp             EEEEECC-
T ss_pred             EEEEecCC
Confidence            99999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.1e-35  Score=261.15  Aligned_cols=241  Identities=12%  Similarity=0.083  Sum_probs=194.3

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|.+.|++++|+|+|++|++|+ |+.|+||++.+........+. .|...+.++.|++++..+++++.|     +.|
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d-----~~v   79 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQD-----RNA   79 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETT-----SSE
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCC-----CeE
Confidence            4455778999999999999999997 888999999876323334554 788899999999999889998887     999


Q ss_pred             EEEeCCCCc---EEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe---EEEEEec-cCCCeeEEEEecCCC
Q 017642          159 MIWDDHQSR---CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK---LLHQIET-IANPKGLCAVSQGVG  227 (368)
Q Consensus       159 ~vwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~  227 (368)
                      ++||+.+++   ....+. |...|.+++|+|++.+++   .|+.|++||+++++   ....+.. |...+.+++|+|+++
T Consensus        80 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             EEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             EEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            999999877   555555 999999999999998777   58999999998877   3677777 899999999999987


Q ss_pred             eEEEEeecCCCCeEEEEecC-------------------cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          228 SLVLVCPGLQKGQVRVEHYA-------------------SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~-------------------~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      .  +++ |+.|+.|++|+..                   ...+..+ .|...|.+++|+|++++|++++.||. |+|||+
T Consensus       160 ~--l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~  234 (377)
T 3dwl_C          160 L--LAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYP  234 (377)
T ss_dssp             E--EEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEE
T ss_pred             E--EEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEEC
Confidence            4  443 6689999999874                   3445556 89999999999999999999999999 999999


Q ss_pred             CCCce----eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          289 LDGTL----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       289 ~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      .+++.    +..+..  |...|.+++|+|++++|++++.++.+ +|+...
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          235 SAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             CSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             CCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            99987    777777  78899999999999999998877655 777653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.6e-33  Score=267.47  Aligned_cols=247  Identities=17%  Similarity=0.237  Sum_probs=208.3

Q ss_pred             cccCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEecCCCc---ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      ....|.+.|++++|++++ ++|++|+ |+.|+||++.....   .....+. +|...+.++.|++++..+++++.|    
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~D----  451 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWD----  451 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT----
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCC----
Confidence            456899999999999875 7899998 88899999976432   2234454 888999999999999999999988    


Q ss_pred             CCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE---eccCCCeeEEEEecCCC
Q 017642          155 LNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVG  227 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~  227 (368)
                       +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||+.........   .+|...|.+++|++++.
T Consensus       452 -g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          452 -GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             -CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence             999999999999999888 999999999999998887   5999999998655443332   35777899999999985


Q ss_pred             eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          228 SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      ...+++ |+.|+.|++|+... +....+.+|...|++++|+|+|++|++|+.||. |+|||+.+++.+..+..   ...|
T Consensus       531 ~~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~---~~~v  605 (694)
T 3dm0_A          531 QPTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEA---NSVI  605 (694)
T ss_dssp             SCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBC---SSCE
T ss_pred             cceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecC---CCcE
Confidence            434554 77899999998765 555678899999999999999999999999999 99999999998887764   4679


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .+++|+|++.+|++++ |+.|+|||+++++..
T Consensus       606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIV  636 (694)
T ss_dssp             EEEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence            9999999999888776 566999999887543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9e-34  Score=252.72  Aligned_cols=238  Identities=13%  Similarity=0.155  Sum_probs=199.5

Q ss_pred             CCCCCEEEEEEcCC----CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCC
Q 017642           83 SPPPTLLHISFNQD----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLN  156 (368)
Q Consensus        83 ~h~~~v~~~~~s~~----g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~  156 (368)
                      .|...|++++|+|+    |++|++|+ |+.|++||+.+.+..  ..+. .|...+.++.|++ ++..+++++.|     +
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d-----g  138 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYV-GHGNAINELKFHPRDPNLLLSVSKD-----H  138 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEE-SCCSCEEEEEECSSCTTEEEEEETT-----S
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--eeec-CCCCcEEEEEECCCCCCEEEEEeCC-----C
Confidence            47789999999999    67899988 888999999876654  4454 7888999999999 88888888887     9


Q ss_pred             cEEEEeCCCCcEEEEE---e-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec-----------------
Q 017642          157 KVMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET-----------------  212 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~-----------------  212 (368)
                      .|++||+.+++.+..+   . |...|.+++|+|++.+++   .|+.|++||+++++....+..                 
T Consensus       139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (366)
T 3k26_A          139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK  218 (366)
T ss_dssp             CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred             eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence            9999999999999988   4 899999999999998887   589999999988765443332                 


Q ss_pred             -----------cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc---------------eeeeeeccCcceEEEEE
Q 017642          213 -----------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---------------RTKFIMAHDSRIACFAL  266 (368)
Q Consensus       213 -----------~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---------------~~~~~~~~~~~i~~v~~  266 (368)
                                 |...+.+++|+  ++  ++++ ++.|+.|++|+....               .+..+..|...|.+++|
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (366)
T 3k26_A          219 IHFPDFSTRDIHRNYVDCVRWL--GD--LILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF  293 (366)
T ss_dssp             ECCCSEEECSSCSSCCCEEEEE--TT--EEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred             eccCccccccCCcceEEEEEEc--CC--EEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence                       88899999998  44  3443 678999999886542               35567789999999999


Q ss_pred             CCC--CCEEEEEeCCCcEEEEEECCCCcee----EeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          267 TQD--GQLLATSSTKGTLVRIFNTLDGTLL----QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       267 sp~--g~~l~s~~~dg~~i~iwd~~~~~~~----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +|+  +++|++++.||. |++||+.+++..    ..+..+.|...|.+++|+|++++|++++.||.|++||+.+
T Consensus       294 s~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          294 SMDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cCCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999  999999999999 999999987643    3666633478999999999999999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.1e-33  Score=250.49  Aligned_cols=245  Identities=13%  Similarity=0.169  Sum_probs=204.7

Q ss_pred             ccccCCCCCEEEEEEcCC----C---CEEEEEe-CCeEEEEEecCCCcc---eEEEcccCC-----ceeEEEEEEe----
Q 017642           79 STSSSPPPTLLHISFNQD----H---GCFAAGT-DHGFRIYNCDPFREI---FRRDFERGG-----GIGVVEMLFR----  138 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~----g---~~l~~~~-d~~i~iw~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~----  138 (368)
                      .....|...|++++|+|+    |   ++|++++ |+.|++|++...+..   ....+. .+     ...+.++.|+    
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC-
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccC
Confidence            344589999999999999    9   9999998 888999999876641   023343 45     5889999999    


Q ss_pred             CCeEE-EEecCCCCCCCCCcEEEEeCCC------CcEEE-----EE-------e-cCCceeEEEEeeCccEEE---eCCc
Q 017642          139 CNILA-LVGGGPDPQYPLNKVMIWDDHQ------SRCIG-----EL-------S-FRSEVRSVKLRRDRIIVV---LEQK  195 (368)
Q Consensus       139 ~~~~~-~~s~~~d~~~~~~~i~vwd~~~------~~~~~-----~~-------~-~~~~v~~~~~~~~~~~l~---~d~~  195 (368)
                      +++.. +++++.|     +.|++||+.+      ++.+.     .+       . |...|.+++|+|++ +++   .|+.
T Consensus       135 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~  208 (397)
T 1sq9_A          135 RLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT  208 (397)
T ss_dssp             ---CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred             CCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence            88888 8888877     9999999988      65544     55       2 68899999999999 666   5899


Q ss_pred             EEEEEcCCCeEEEEEec---c---CCCeeEEEEecCCCeEEEEeecCCC---CeEEEEecC-cceeeeeec---------
Q 017642          196 IFVYNFADLKLLHQIET---I---ANPKGLCAVSQGVGSLVLVCPGLQK---GQVRVEHYA-SKRTKFIMA---------  256 (368)
Q Consensus       196 i~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~~~g~~d---g~i~i~~~~-~~~~~~~~~---------  256 (368)
                      |++||+++++.+..+..   |   ...+.+++|+++++.  +++ ++.|   |.|++|+.. .+.+..+..         
T Consensus       209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~--l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL--LAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  285 (397)
T ss_dssp             EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE--EEE-EEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             EEEEECCCCceeEEEeccccccccCCccceEEECCCCCE--EEE-EecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence            99999999999999988   8   899999999999885  333 5578   999998865 466677777         


Q ss_pred             ----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE------eccC---------------cccEEEEEE
Q 017642          257 ----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR------RGAD---------------RAEIYSLAF  311 (368)
Q Consensus       257 ----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~------~~~~---------------~~~v~~l~~  311 (368)
                          |...|.+++|+|++++|++++.||. |+|||+.+++.+..+.      .  |               ...|.+++|
T Consensus       286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~~~~~  362 (397)
T 1sq9_A          286 GEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIE--IEEDILAVDEHGDSLAEPGVFDVKF  362 (397)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCS--SGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred             cccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCccc--chhhhhccccccccccCCceeEEEe
Confidence                9999999999999999999999999 9999999999999988      5  5               789999999


Q ss_pred             ecCC----------CEEEEEeCCCeEEEEEccCCC
Q 017642          312 SSNA----------QWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       312 sp~~----------~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +|++          ++|++++.||.|++|++++++
T Consensus       363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            9998          799999999999999998864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=253.88  Aligned_cols=248  Identities=13%  Similarity=0.162  Sum_probs=209.9

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCc
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNK  157 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~  157 (368)
                      ..|...|++++|+|++++|++|+ |+.|++|++...  .......+. .|...+.++.|+++ +..+++++.|     +.
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~  137 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNN-----GE  137 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSS-----SC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCC-----Ce
Confidence            35788999999999999999998 788999999862  122334554 78888999999987 7788888887     99


Q ss_pred             EEEEeCCCCc------EEEEE---e-cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEEecc------CCCe
Q 017642          158 VMIWDDHQSR------CIGEL---S-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETI------ANPK  217 (368)
Q Consensus       158 i~vwd~~~~~------~~~~~---~-~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~~~~------~~~v  217 (368)
                      |++||+.+++      ....+   . |...|.+++|+|+ +.+++   .|+.|++||+++++.+..+..+      ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999999886      33333   3 8889999999998 66666   5899999999999999888766      7889


Q ss_pred             eEEEEecCCCeEEEEeecCCCC---eEEEEecCc--ceeeeee-ccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCC
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKG---QVRVEHYAS--KRTKFIM-AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg---~i~i~~~~~--~~~~~~~-~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .+++|+|++..++++  ++.|+   .|++|+...  ..+..+. +|...|.+++|+| ++++|++++.||. |++||+++
T Consensus       218 ~~~~~~~~~~~~l~~--~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~  294 (416)
T 2pm9_A          218 SVVEWHPKNSTRVAT--ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES  294 (416)
T ss_dssp             EEEEECSSCTTEEEE--EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS
T ss_pred             EEEEECCCCCCEEEE--EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC
Confidence            999999998654433  55677   999998775  4566677 8999999999999 8999999999999 99999999


Q ss_pred             CceeEeeEeccCcccEEEEEEecCC-CEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++.+..+..  |...|.+++|+|++ .+|++++.||.|+|||+.+.+....
T Consensus       295 ~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          295 AEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             CCEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             CccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            999999987  78899999999999 8999999999999999998775543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=243.61  Aligned_cols=249  Identities=14%  Similarity=0.156  Sum_probs=201.8

Q ss_pred             cccccCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQD---HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~---g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      ......|.+.|++++|+|+   |++|++|+ |+.|+||++++........+. .|...+.++.|++++..+++++.|   
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d---  107 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD---  107 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT---
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC---
Confidence            4456789999999999999   69999999 888999999874544434554 788899999999999888888887   


Q ss_pred             CCCcEEEEeCCCCcEEEEEecCCceeEEEE--eeCccEEE---eCCcEEEEEcCCCeEEEEEeccC--------------
Q 017642          154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKL--RRDRIIVV---LEQKIFVYNFADLKLLHQIETIA--------------  214 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~--------------  214 (368)
                        +.|++||+.+++.+....|...|.+++|  ++++.+++   .|+.|++||+++++.+..+..+.              
T Consensus       108 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          108 --KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             --SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             --CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence              9999999999998887779999999999  88888777   58999999999887766665432              


Q ss_pred             ---------------------------CCeeEEEEecCCCe--EEEEeecCCCCeEEEEecCc----ceeeeeeccCc--
Q 017642          215 ---------------------------NPKGLCAVSQGVGS--LVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDS--  259 (368)
Q Consensus       215 ---------------------------~~v~~~~~~~~~~~--~~l~~~g~~dg~i~i~~~~~----~~~~~~~~~~~--  259 (368)
                                                 ....++.+.++...  ..+++ |+.||.|++|+...    .....+..|..  
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL-GSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE-EETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE-ecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence                                       12233344333321  12443 67899999988776    34456666665  


Q ss_pred             ----------ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          260 ----------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       260 ----------~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                                .|++++|+|++++|++++.||. |+|||+.+++++..+..  |...|.+++|+|+|++|++++.|+..+.
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~  341 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKG  341 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCC--CSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEecC--CCCCceEEEECCCCCeEEEEeccccccc
Confidence                      7999999999999999999999 99999999999988887  7889999999999999999999887666


Q ss_pred             EEccCCC
Q 017642          330 FNLKVNS  336 (368)
Q Consensus       330 wd~~~~~  336 (368)
                      |++-+.+
T Consensus       342 ~~~~~~~  348 (368)
T 3mmy_A          342 HEFYNPQ  348 (368)
T ss_dssp             GGGCCTT
T ss_pred             ccccCCC
Confidence            6655443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=245.03  Aligned_cols=246  Identities=9%  Similarity=0.148  Sum_probs=202.2

Q ss_pred             cccCCCCCEEEEEEcCCCCEEE-EEe----CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC---eEEEEecCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFA-AGT----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDP  151 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~-~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~d~  151 (368)
                      ....|...|.+++|+|++..++ +|+    |+.|+||++.+.+......+  .|...+.++.|+++   +..+++++.| 
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~d-   89 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFG-   89 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETT-
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEecCC-
Confidence            4456999999999999997654 553    56699999998776544444  57778999999998   5777777777 


Q ss_pred             CCCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEE------eeCccEEE---eCCcEEEEEcCCCe-EEEEEeccCC----
Q 017642          152 QYPLNKVMIWDDHQSR-CIGELS-FRSEVRSVKL------RRDRIIVV---LEQKIFVYNFADLK-LLHQIETIAN----  215 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~l~---~d~~i~vwd~~~~~-~~~~~~~~~~----  215 (368)
                          +.|++||+.+++ .+..+. |...|.++.|      ++++.+++   .|+.|++||+++++ .+..+..+.+    
T Consensus        90 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           90 ----GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             ----SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             ----CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence                999999999987 777887 9999999965      67888877   58999999999886 6777765544    


Q ss_pred             CeeEEE----EecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECC---CCCEEEEEeCCCcEEEEEEC
Q 017642          216 PKGLCA----VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       216 ~v~~~~----~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp---~g~~l~s~~~dg~~i~iwd~  288 (368)
                      .+.+++    |+++++.  +++ |+.||.|++|+...........|...|.+++|+|   ++.+|++++.||. |++||+
T Consensus       166 ~v~~~~~~~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~  241 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERV--VCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDM  241 (357)
T ss_dssp             CEEEEEEECCCC-CCCE--EEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEE
T ss_pred             ceEEEEEEeccCCCCCE--EEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeC
Confidence            677777    6778874  343 6689999999988877777788999999999999   8999999999999 999999


Q ss_pred             CCCceeEeeE-----eccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCCC
Q 017642          289 LDGTLLQEVR-----RGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       289 ~~~~~~~~~~-----~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ++++.+..+.     .  |...|.+++|+|+++ +|++++.||.|++||++++...
T Consensus       242 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          242 RTQHPTKGFASVSEKA--HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             EEEETTTEEEEEEEEC--CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             cCCCcccceeeeccCC--CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            8877655544     4  788999999999998 8999999999999999987654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.4e-32  Score=261.85  Aligned_cols=242  Identities=15%  Similarity=0.236  Sum_probs=197.9

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|+|++|++|+ |+.|+|||+.++...  ..+. .|...+.++.|++++..+++++.|     ++
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~s~D-----~~  495 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--RRFV-GHTKDVLSVAFSLDNRQIVSASRD-----RT  495 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEECTTSSCEEEEETT-----SC
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce--eEEe-CCCCCEEEEEEeCCCCEEEEEeCC-----CE
Confidence            34568999999999999999999999 888999999876554  4454 888899999999999999999988     99


Q ss_pred             EEEEeCCCCcEEEEE----ecCCceeEEEEeeCc--cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          158 VMIWDDHQSRCIGEL----SFRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       158 i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~--~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                      |++||+.........    .|...|.+++|+|++  ..++   .|+.|++||++++++...+.+|...|.+++|+|+++.
T Consensus       496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence            999997655433332    277789999999986  3444   5999999999999999999999999999999999984


Q ss_pred             EEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-------
Q 017642          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------  301 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------  301 (368)
                        +++ |+.||.|++|+...........+...|.+++|+|++.+|++++ ++. |+|||+++++.+..+....       
T Consensus       576 --l~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~  650 (694)
T 3dm0_A          576 --CAS-GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKA  650 (694)
T ss_dssp             --EEE-EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC------
T ss_pred             --EEE-EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhccccccccccc
Confidence              443 7789999999876544333334456799999999998887766 556 9999999998887765311       


Q ss_pred             ----------CcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          302 ----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       302 ----------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                                +...+.+++|+|||++|++|+.||+|+||++.
T Consensus       651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                      11237899999999999999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-32  Score=246.19  Aligned_cols=248  Identities=11%  Similarity=0.176  Sum_probs=204.9

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC----cceEEEcccCCceeEEEEEEeCC----e---EEEEe
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCN----I---LALVG  146 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~s  146 (368)
                      .....|.+.|++++|+|  ++|++|+ |+.|+||++...+    ......+. .|...+.++.|+++    +   ..+++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEE
Confidence            45568999999999999  7888888 8889999998776    12234454 78888999999988    7   78888


Q ss_pred             cCCCCCCCCCcEEEEeCCCCcE-----EEEEe-c-----CCceeEEEEe----eCccE-EE---eCCcEEEEEcCC----
Q 017642          147 GGPDPQYPLNKVMIWDDHQSRC-----IGELS-F-----RSEVRSVKLR----RDRII-VV---LEQKIFVYNFAD----  203 (368)
Q Consensus       147 ~~~d~~~~~~~i~vwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-l~---~d~~i~vwd~~~----  203 (368)
                      ++.|     +.|++||+.+++.     +..+. |     ...|.+++|+    |++.+ ++   .|+.|++||+++    
T Consensus        87 ~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           87 TSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             EcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            8877     9999999998886     77776 6     4899999999    99988 76   589999999988    


Q ss_pred             --CeEEE-----EEe-------ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeec---c---CcceE
Q 017642          204 --LKLLH-----QIE-------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMA---H---DSRIA  262 (368)
Q Consensus       204 --~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~---~---~~~i~  262 (368)
                        ++.+.     .+.       .|...+.+++|++++ .  +++ |+.||.|++|+.. .+.+..+..   |   ...|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L--IAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E--EEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e--EEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence              66665     663       378889999999998 3  343 6789999998876 456667777   8   99999


Q ss_pred             EEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEeeEecc-----------CcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642          263 CFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (368)
Q Consensus       263 ~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s~dg~i~  328 (368)
                      +++|+|++++|++++.|   |. |++||+++++.+..+....           |...|.+++|+|++++|++++.||.|+
T Consensus       238 ~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          238 SVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            99999999999999999   99 9999999999988887511           567899999999999999999999999


Q ss_pred             EEEccCCCCCC
Q 017642          329 VFNLKVNSGSA  339 (368)
Q Consensus       329 iwd~~~~~~~~  339 (368)
                      |||+.+++...
T Consensus       317 iwd~~~~~~~~  327 (397)
T 1sq9_A          317 FWDVKTKERIT  327 (397)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEEcCCCceeE
Confidence            99998876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=243.84  Aligned_cols=238  Identities=17%  Similarity=0.242  Sum_probs=206.2

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .|...|++++|+|++++|++|+ |+.|++|+ ..++.  ...+. .|...+.++.|++++..+++++.|     +.|++|
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw  176 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGAL--LNVLN-FHRAPIVSVKWNKDGTHIISMDVE-----NVTILW  176 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCE--EEEEC-CCCSCEEEEEECTTSSEEEEEETT-----CCEEEE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCe--eeecc-CCCccEEEEEECCCCCEEEEEecC-----CeEEEE
Confidence            3788999999999999999999 77799999 33332  34454 788899999999999888888887     999999


Q ss_pred             eCCCCcEEEEEe-cCCc---------------eeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEe
Q 017642          162 DDHQSRCIGELS-FRSE---------------VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  223 (368)
                      |+.+++.+..+. +...               +.+++|++++.+++  .++.|++||+++++.+..+..|...+.+++|+
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN  256 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence            999999988887 5554               99999999988777  68999999999999988998999999999999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                      ++++.  +++ ++.|+.|++|+... +.+..+..|...|.+++|+|++ +|++++.||. |++||+.+++.+..+..  |
T Consensus       257 ~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~  329 (425)
T 1r5m_A          257 DTNKL--LLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--D  329 (425)
T ss_dssp             TTTTE--EEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--T
T ss_pred             CCCCE--EEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--C
Confidence            99984  333 56899999988665 5566777899999999999999 9999999999 99999999999988887  7


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       303 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ...|.+++|+|++++|++++.||.|++||+.+++
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            7899999999999999999999999999998776

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=251.14  Aligned_cols=243  Identities=9%  Similarity=0.161  Sum_probs=192.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc---------ceEEEcccCCc------------eeEEEEEEeCC
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE---------IFRRDFERGGG------------IGVVEMLFRCN  140 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~---------~~~~~~~~~~~------------~~~~~~~~~~~  140 (368)
                      .|.+.|++++|+|+|++|++|+ |+.|+||++...+.         .....+. +|.            ..|.++.|+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCC
Confidence            4678999999999999999999 88899999986552         1234454 666            67899999998


Q ss_pred             e--EEEEecCCCCCCCCCcEEEEeCCCCcEE---------------------------------------EEE-e-cCCc
Q 017642          141 I--LALVGGGPDPQYPLNKVMIWDDHQSRCI---------------------------------------GEL-S-FRSE  177 (368)
Q Consensus       141 ~--~~~~s~~~d~~~~~~~i~vwd~~~~~~~---------------------------------------~~~-~-~~~~  177 (368)
                      +  ..+++++.|     +.|++||+.+++..                                       ..+ . |...
T Consensus       105 ~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          105 KNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             CSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             CCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            7  566676777     99999998764432                                       122 2 8899


Q ss_pred             eeEEEEeeCccEEE--eCCcEEEEEcCC-CeEEEE-------EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          178 VRSVKLRRDRIIVV--LEQKIFVYNFAD-LKLLHQ-------IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       178 v~~~~~~~~~~~l~--~d~~i~vwd~~~-~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      |.+++|+|++.+++  .|+.|++||+++ ++.+..       +..|...+.+++|+|++.. ++++ |+.||.|++|+..
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s-~~~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVY-SSSKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEE-EETTSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEE-EeCCCeEEEEECc
Confidence            99999999999888  699999999984 444442       4578889999999999833 2333 6789999999876


Q ss_pred             cce-----eeeeeccCc------------ceEEEEECCCCCEEEEEeCCCcEEEEEECCC-CceeEeeEeccCccc----
Q 017642          248 SKR-----TKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAE----  305 (368)
Q Consensus       248 ~~~-----~~~~~~~~~------------~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~----  305 (368)
                      ...     ...+..|..            .|.+++|+|+|++|++++. +. |+|||+++ ++.+..+..  |...    
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~--~~~~~~~l  333 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQV--HEYLRSKL  333 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEES--CGGGTTTH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeec--cccccccc
Confidence            644     466777775            8999999999999999999 98 99999997 888888887  4321    


Q ss_pred             -----------EEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          306 -----------IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       306 -----------v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                                 +..++|+|++++|++++.||.|+|||+.+++.
T Consensus       334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                       33499999999999999999999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.3e-31  Score=263.77  Aligned_cols=246  Identities=13%  Similarity=0.163  Sum_probs=213.7

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|.+.|.+++|+|+|++|++|+ ++.|+|||+.+++..  ..+. .|...+.++.|++++..+++++.|     |.
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g~   78 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----FR   78 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----SE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--EEEe-cCCCcEEEEEEeCCCCEEEEEeCC-----Ce
Confidence            34568999999999999999999999 778999998876554  4454 788889999999999989988887     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC-eEEEEEeccCCCeeEEEEec-CCCeEEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQ-GVGSLVL  231 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~l  231 (368)
                      |++||+.+++.+..+. |...|.+++|+|++.+++   .||.|++||++++ .....+..|...+.+++|+| +++.  +
T Consensus        79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l  156 (814)
T 3mkq_A           79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST--F  156 (814)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE--E
T ss_pred             EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE--E
Confidence            9999999999999998 999999999999998887   5899999999886 77788888999999999999 5543  3


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeecc-CcceEEEEECC--CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMAH-DSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~-~~~i~~v~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                      ++ ++.||.|++|+... .....+..+ ...+.+++|+|  ++.+|++++.||. |++||+.+++.+..+..  |...|.
T Consensus       157 ~~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~  232 (814)
T 3mkq_A          157 AS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVS  232 (814)
T ss_dssp             EE-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCEE
T ss_pred             EE-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCEE
Confidence            33 66899999998754 444445444 48899999999  9999999999999 99999999999988887  778999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +++|+|++++|++++.||.|++||+.+++..
T Consensus       233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            9999999999999999999999999886644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-31  Score=239.24  Aligned_cols=247  Identities=8%  Similarity=0.038  Sum_probs=203.8

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|++++|++++ |+.|++||++..+......+. .+...+.++.|++++..+++++.|     +.
T Consensus        46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~  119 (372)
T 1k8k_C           46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS-----RV  119 (372)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT-----SS
T ss_pred             eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC-----CE
Confidence            34457999999999999999999999 788999999877655444443 678889999999999888888887     99


Q ss_pred             EEEEeCCCCcE---EEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEc------------------CCCeEEEEEe
Q 017642          158 VMIWDDHQSRC---IGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNF------------------ADLKLLHQIE  211 (368)
Q Consensus       158 i~vwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~------------------~~~~~~~~~~  211 (368)
                      |++||+..++.   ...+.  |...|.+++|+|++.+++   .|+.|++||+                  ..++.+..+.
T Consensus       120 v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          120 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence            99999988763   33333  788999999999998887   5899999995                  4678888888


Q ss_pred             ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       212 ~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      .|...+.+++|+++++.  +++ ++.|+.|++|+.. .+.+..+..|...|.+++|+|++++|+++ .|+. |++||+.+
T Consensus       200 ~~~~~v~~~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~  274 (372)
T 1k8k_C          200 SSCGWVHGVCFSANGSR--VAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDS  274 (372)
T ss_dssp             CCSSCEEEEEECSSSSE--EEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEET
T ss_pred             CCCCeEEEEEECCCCCE--EEE-EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccC
Confidence            89999999999999984  343 5689999998875 56777888999999999999999988887 8899 99999987


Q ss_pred             --Cce--e------------------------------------EeeEeccCcccEEEEEEe-cCC---CEEEEEeCCCe
Q 017642          291 --GTL--L------------------------------------QEVRRGADRAEIYSLAFS-SNA---QWLAVSSDKGT  326 (368)
Q Consensus       291 --~~~--~------------------------------------~~~~~~~~~~~v~~l~~s-p~~---~~l~s~s~dg~  326 (368)
                        ++.  +                                    ..+.. .|...|.+++|. ++|   .+|++++.||.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~  353 (372)
T 1k8k_C          275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS-LHKNSVSQISVLSGGKAKCSQFCTTGMDGG  353 (372)
T ss_dssp             TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS-SSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred             cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc-cccCCcceeEEecCCCcceeeEEEecCCCc
Confidence              421  0                                    22221 278899999976 666   99999999999


Q ss_pred             EEEEEccCCCC
Q 017642          327 VHVFNLKVNSG  337 (368)
Q Consensus       327 i~iwd~~~~~~  337 (368)
                      |++||++++++
T Consensus       354 i~~W~~~~~~~  364 (372)
T 1k8k_C          354 MSIWDVRSLES  364 (372)
T ss_dssp             EEEEEHHHHHH
T ss_pred             eEEEEecChhH
Confidence            99999987654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-32  Score=249.12  Aligned_cols=249  Identities=13%  Similarity=0.185  Sum_probs=201.1

Q ss_pred             cccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecC---CCcc-eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDP---FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      ....|.+.|++++|+| ++++|++|+ |+.|+|||+..   .... ....+  .|...+.++.|++++..+++++.|   
T Consensus        58 ~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d---  132 (437)
T 3gre_A           58 LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFDAFAVSSKD---  132 (437)
T ss_dssp             ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSSEEEEEETT---
T ss_pred             eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCCEEEEEeCC---
Confidence            3377999999999999 999999999 88899999876   3211 11233  477889999999999889998888   


Q ss_pred             CCCcEEEEeCC---CCcEEEEEe-------------cCCceeEEE--EeeCccEEE---eCCcEEEEEcCCCeEEEEEec
Q 017642          154 PLNKVMIWDDH---QSRCIGELS-------------FRSEVRSVK--LRRDRIIVV---LEQKIFVYNFADLKLLHQIET  212 (368)
Q Consensus       154 ~~~~i~vwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~  212 (368)
                        +.|++||+.   +++....+.             +...+.++.  +++++.+++   .|+.|++||+++++++..+..
T Consensus       133 --g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          133 --GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             --SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             --CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence              999999984   555544333             344566666  456787777   589999999999999999987


Q ss_pred             --cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeee-ccCcceEEEEECC----CCCEEEEEeCCCcEEE
Q 017642          213 --IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM-AHDSRIACFALTQ----DGQLLATSSTKGTLVR  284 (368)
Q Consensus       213 --~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~-~~~~~i~~v~~sp----~g~~l~s~~~dg~~i~  284 (368)
                        |...+.+++|+|+++.  +++ |+.||.|++|+... ..+..+. .|...|.+++|+|    ++.+|++++.||. |+
T Consensus       211 ~~h~~~v~~~~~s~~~~~--l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~  286 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCV--LIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LT  286 (437)
T ss_dssp             CGGGCCEEEEEECTTSCE--EEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EE
T ss_pred             CCCCCceEEEEECCCCCE--EEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EE
Confidence              7899999999999874  443 67899999998765 4445554 7888999996664    6779999999999 99


Q ss_pred             EEECCCCceeEeeEecc------------------------CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          285 IFNTLDGTLLQEVRRGA------------------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~------------------------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      |||+++++.+..+..+.                        |...|.+++|+ ++++|++++.||.|++||+.+++....
T Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence            99999999888877431                        55679999999 789999999999999999998876543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.4e-32  Score=239.83  Aligned_cols=247  Identities=14%  Similarity=0.051  Sum_probs=202.0

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcce-EEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF-RRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~  156 (368)
                      +...|.+.|++++|+|++++|++++ |+.|+||++....... ...+. .+...+.++.|++++. .+++++.|     +
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-----g   79 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQ-----G   79 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETT-----S
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCC-----C
Confidence            3457999999999999999999998 8889999998766211 12222 6778899999998888 88888877     9


Q ss_pred             cEEEEeC-CCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCC---------CeEEEEEeccCCCeeEEE
Q 017642          157 KVMIWDD-HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD---------LKLLHQIETIANPKGLCA  221 (368)
Q Consensus       157 ~i~vwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~~~  221 (368)
                      .|++||+ .+++......  |...|.+++|++ +.+++   .|+.|++||+++         ++++..+. +...+.+++
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred             eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence            9999999 8887755555  889999999999 77666   589999999987         76666665 788899999


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecCc-ce---eeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCC-----
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KR---TKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----  291 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~---~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~-----  291 (368)
                      |++++    +++ ++.|+.|++|+... ..   ......|...|.+++|+| ++++|++++.||. |+|||+...     
T Consensus       158 ~~~~~----l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          158 TNSSR----LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYN  231 (342)
T ss_dssp             ECSSE----EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTT
T ss_pred             ecCCc----EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccc
Confidence            98876    333 56899999998776 22   223456888999999999 9999999999999 999999887     


Q ss_pred             -ceeEeeEecc-------CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          292 -TLLQEVRRGA-------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       292 -~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                       +.+..+..+.       |...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  288 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence             7777777631       134899999999999999999999999999998775543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-32  Score=249.10  Aligned_cols=237  Identities=8%  Similarity=0.065  Sum_probs=195.5

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .+++++|+|+|++|++++ |+.|++||+.+.+..  ..+. .+ ..+....+++++..+++++.|     +.|++||+.+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  128 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--KMLK-RA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNF  128 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--TTSC-SC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTS
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee--eEEe-cC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCC
Confidence            345689999999999999 888999998765543  2232 33 333444678888888888887     9999999999


Q ss_pred             CcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642          166 SRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       166 ~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i  241 (368)
                      ++....+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...|.+++|+|+++.  ++ +++.|+.|
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~-s~~~d~~v  205 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN--VL-SASLDGTI  205 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE--EE-EEETTSCE
T ss_pred             cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE--EE-EEcCCCcE
Confidence            99888875 999999999999998887   5899999999999999999999999999999999985  33 36689999


Q ss_pred             EEEecCc-ceeeeeec---cCcceE---------------------EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          242 RVEHYAS-KRTKFIMA---HDSRIA---------------------CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       242 ~i~~~~~-~~~~~~~~---~~~~i~---------------------~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      ++|+... +.+..+..   |...|.                     +++|+|++++|++++.||. |++||+++++.+..
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEE
Confidence            9998764 44455543   334444                     4555789999999999999 99999999998877


Q ss_pred             eEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCCC
Q 017642          297 VRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       297 ~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +... |...|.+++|+|+++ +|++++.||.|++||+++++.
T Consensus       285 ~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          285 LPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             ECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             cccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            7643 678999999999999 999999999999999998754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-31  Score=238.81  Aligned_cols=247  Identities=16%  Similarity=0.226  Sum_probs=202.0

Q ss_pred             ccccCCCCCEEEEEEcCC---CC--EEEEEeCCeEEEEEecCCCcceEEE-cc-cCCceeEEEEEEeCC----eEEEEec
Q 017642           79 STSSSPPPTLLHISFNQD---HG--CFAAGTDHGFRIYNCDPFREIFRRD-FE-RGGGIGVVEMLFRCN----ILALVGG  147 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~---g~--~l~~~~d~~i~iw~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~s~  147 (368)
                      .....|...|++++|+|+   +.  ++++++++.|++|++.+.+...... +. ..+...+.+++|+++    +..++++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            345589999999999984   33  5555568899999998655432211 11 125677889999887    6788888


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEE---eccCCCeeE
Q 017642          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGL  219 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~---~~~~~~v~~  219 (368)
                      +.|     |.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+++++.+..+   ..|...+.+
T Consensus        92 ~~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           92 GSR-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             ETT-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             cCC-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            887     999999999999999998 999999999999 888777   5899999999999998888   678999999


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCcce-eeee----------------------------eccCcceEEEEECCCC
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI----------------------------MAHDSRIACFALTQDG  270 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~----------------------------~~~~~~i~~v~~sp~g  270 (368)
                      ++|+++++.  +++ ++.||.|++|+..... ...+                            ..|...|.+++|+  +
T Consensus       167 ~~~~~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          167 ADYDLLGEK--IMS-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEECTTSSE--EEE-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             EEECCCCCE--EEE-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            999999985  333 5689999999876532 2222                            2389999999998  7


Q ss_pred             CEEEEEeCCCcEEEEEECCCCce--------------eEeeEeccCcccEEEEEEecC--CCEEEEEeCCCeEEEEEccC
Q 017642          271 QLLATSSTKGTLVRIFNTLDGTL--------------LQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~~~  334 (368)
                      ++|++++.||. |++||+.+++.              +..+..  |...|.+++|+|+  +++|++++.||.|++||+.+
T Consensus       242 ~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          242 DLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence            79999999999 99999987754              666666  7788999999999  99999999999999999998


Q ss_pred             CCCC
Q 017642          335 NSGS  338 (368)
Q Consensus       335 ~~~~  338 (368)
                      ++..
T Consensus       319 ~~~~  322 (366)
T 3k26_A          319 EDPH  322 (366)
T ss_dssp             SSGG
T ss_pred             CCCc
Confidence            7643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.2e-31  Score=242.18  Aligned_cols=238  Identities=11%  Similarity=0.103  Sum_probs=194.8

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ..+....|++++++|++|+ |+.|++||+......  ..+. .|...+.++.|++++..+++++.|     +.|++||+.
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~  169 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQ-AHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVK  169 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETT-SSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecc-cccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Confidence            3445557899999999999 788999998755443  4454 788999999999999999999888     999999999


Q ss_pred             CCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec---cCCCeeEE-----------------
Q 017642          165 QSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET---IANPKGLC-----------------  220 (368)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~-----------------  220 (368)
                      +++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..   +...+..+                 
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            999999888 999999999999999887   589999999999999988864   33344444                 


Q ss_pred             ----EEecCCCeEEEEeecCCCCeEEEEecCcc-eeeee-eccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCce
Q 017642          221 ----AVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       221 ----~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~-~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                          +|+++++.  +++ |+.||.|++|+.... .+..+ ..|...|.+++|+|+++ +|++|+.||. |++||+++++.
T Consensus       250 v~~~~~s~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~  325 (420)
T 3vl1_A          250 KNNLEFGTYGKY--VIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPEC  325 (420)
T ss_dssp             CCTTCSSCTTEE--EEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTS
T ss_pred             ccceEEcCCCCE--EEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcC
Confidence                45666654  443 678999999887653 33343 45888999999999999 9999999999 99999998754


Q ss_pred             -eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          294 -LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       294 -~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                       +..+..+ |...|.++.| +++++|++++.|+.|++|++.+++.
T Consensus       326 ~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          326 PVGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             CSEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred             chhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence             6667654 5667888855 5788999999999999999988544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=244.07  Aligned_cols=239  Identities=11%  Similarity=0.143  Sum_probs=202.7

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCcee---------------EEEEEEeCCeE
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIG---------------VVEMLFRCNIL  142 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~  142 (368)
                      .....|...|.+++|+|++++|++++ |+.|++||+.+.+...  .+. .+...               +.++.|.+++.
T Consensus       143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (425)
T 1r5m_A          143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ--HFE-LKETGGSSINAENHSGDGSLGVDVEWVDDDK  219 (425)
T ss_dssp             EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE--EEC-CC---------------CCCBSCCEEEETTE
T ss_pred             eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE--Eee-ccccCccceeeccccCCcceeeEEEEcCCCE
Confidence            44567999999999999999999998 8889999998766543  332 23333               67788888877


Q ss_pred             EEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCee
Q 017642          143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG  218 (368)
Q Consensus       143 ~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~  218 (368)
                      ++++ +.+     +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...+.
T Consensus       220 ~~~~-~~~-----g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  293 (425)
T 1r5m_A          220 FVIP-GPK-----GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV  293 (425)
T ss_dssp             EEEE-CGG-----GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE
T ss_pred             EEEE-cCC-----CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE
Confidence            5554 444     999999999998888887 899999999999998887   589999999999999999988999999


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc-----
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-----  292 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~-----  292 (368)
                      +++|++++   .+++ ++.|+.|++|+.. .+.+..+..|...|.+++|+|++++|++++.||. |++||+.+++     
T Consensus       294 ~~~~~~~~---~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~  368 (425)
T 1r5m_A          294 SASWVGDD---KVIS-CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRS  368 (425)
T ss_dssp             EEEEETTT---EEEE-EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC----
T ss_pred             EEEECCCC---EEEE-EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceee
Confidence            99999998   2343 5689999998865 4666678889999999999999999999999999 9999999888     


Q ss_pred             ---------------eeEeeEeccCcc--cEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          293 ---------------LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       293 ---------------~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                                     .+..+..  |..  .|.+++|+|++++|++++.||.|++||++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          369 LYGNRDGILNPLPIPLYASYQS--SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ----------CEECCEEEEECC--TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eecccccccCcccchhhhhhcC--cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                           7878877  544  89999999999999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-32  Score=264.36  Aligned_cols=246  Identities=16%  Similarity=0.167  Sum_probs=203.0

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC--eEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~d~~~~~~  156 (368)
                      +..+|.+.|++++|+|+|++|++|+ |+.|+||++..........+. .|...|.++.|+++  +..+++++.|     |
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~D-----g   77 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----G   77 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETT-----S
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCC-----C
Confidence            4578999999999999999999998 888999999865555556665 78899999999877  8888888887     9


Q ss_pred             cEEEEeCCCCc--EEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCC--eEEEEEeccCCCeeEEEEecC-
Q 017642          157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL--KLLHQIETIANPKGLCAVSQG-  225 (368)
Q Consensus       157 ~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~-  225 (368)
                      .|++||+.+++  .+..+. |...|.+++|+|+  +.+++   .||.|++||++++  .....+..|...+.+++|+|. 
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999999886  555565 8999999999998  87777   5899999999877  334556788899999999994 


Q ss_pred             ------------CCeEEEEeecCCCCeEEEEecCc-----ceeeeeeccCcceEEEEECCC---CCEEEEEeCCCcEEEE
Q 017642          226 ------------VGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRI  285 (368)
Q Consensus       226 ------------~~~~~l~~~g~~dg~i~i~~~~~-----~~~~~~~~~~~~i~~v~~sp~---g~~l~s~~~dg~~i~i  285 (368)
                                  ++.  +++ |+.||.|++|+...     .....+.+|...|++++|+|+   +++|++++.||. |++
T Consensus       158 ~~~~~~~~~~~d~~~--l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~i  233 (753)
T 3jro_A          158 IEEDGEHNGTKESRK--FVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CII  233 (753)
T ss_dssp             ---------CGGGCC--EEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEE
T ss_pred             cccccccccCCCCCE--EEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEE
Confidence                        553  343 66899999988754     344567889999999999999   899999999999 999


Q ss_pred             EECCCCc-----eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          286 FNTLDGT-----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       286 wd~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ||+.+++     .+....  .|...|.+++|+|+|++|++++.||.|++|++.++..
T Consensus       234 wd~~~~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEE--KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EEESSSSSCCBCCBSSSS--CCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             ecCCCCCCcceeEEeccC--CCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            9998874     222222  2677899999999999999999999999999986543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-31  Score=238.33  Aligned_cols=241  Identities=19%  Similarity=0.232  Sum_probs=193.4

Q ss_pred             cCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEecCCC-cceEEEcccCCceeEEEEEE------eCCeEEEEecCCC
Q 017642           82 SSPPPTLLHISFNQD---HGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLF------RCNILALVGGGPD  150 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~---g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~d  150 (368)
                      ..|...|.+++|+|+   |++|++|+ |+.|++||+...+ ..  ..+. .|...+.++.|      ++++..+++++.|
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV--YSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS--EEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE--EEEE-ecccceEEEeeccccccCCCccEEEEEeCC
Confidence            468899999999998   69999998 8889999998776 33  3343 67777888854      5678788888887


Q ss_pred             CCCCCCcEEEEeCCCCc-EEEEEe-cCC----ceeEEE----EeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe
Q 017642          151 PQYPLNKVMIWDDHQSR-CIGELS-FRS----EVRSVK----LRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK  217 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~-~~~~~~-~~~----~v~~~~----~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v  217 (368)
                           +.|++||+.+++ .+..+. +.+    .+.+++    |++++.+++   .|+.|++||+++++.... ..+...+
T Consensus       139 -----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v  212 (357)
T 3i2n_A          139 -----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGV  212 (357)
T ss_dssp             -----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCE
T ss_pred             -----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCce
Confidence                 999999999886 667765 333    788988    678888888   579999999999987554 4678899


Q ss_pred             eEEEEec---CCCeEEEEeecCCCCeEEEEecCcce-eeee-----eccCcceEEEEECCCCC-EEEEEeCCCcEEEEEE
Q 017642          218 GLCAVSQ---GVGSLVLVCPGLQKGQVRVEHYASKR-TKFI-----MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFN  287 (368)
Q Consensus       218 ~~~~~~~---~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~-----~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd  287 (368)
                      .+++|+|   +++.  +++ |+.||.|++|+..... ...+     ..|...|++++|+|+++ +|++++.||. |++||
T Consensus       213 ~~~~~~~~~~~~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd  288 (357)
T 3i2n_A          213 CSLEFDRKDISMNK--LVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWK  288 (357)
T ss_dssp             EEEEESCSSSSCCE--EEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEE
T ss_pred             EEEEcCCCCCCCCE--EEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEee
Confidence            9999999   7775  333 5689999998866532 2233     38999999999999998 8999999999 99999


Q ss_pred             CCCC-------------------ceeEeeEeccCcccEEEEEEecCCCEEE-EEeCCCeEEEEEccCCCC
Q 017642          288 TLDG-------------------TLLQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       288 ~~~~-------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~  337 (368)
                      ++++                   +.+..+..  |...|.+++|+|++++|+ +++.||.|+|||+.+.+.
T Consensus       289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EECCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cCCCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            9754                   34556666  788999999999999988 899999999999987653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-30  Score=227.80  Aligned_cols=240  Identities=14%  Similarity=0.157  Sum_probs=201.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|.+.|++++| +++++|++|+ |+.|++||+.+....  ..+. .+...+.++.|++++..+++++.|     +.
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----g~   82 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--TVVY-TGQGFLNSVCYDSEKELLLFGGKD-----TM   82 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--EEEE-ECSSCEEEEEEETTTTEEEEEETT-----SC
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--EEee-cCCccEEEEEECCCCCEEEEecCC-----Ce
Confidence            456789999999999 9999999999 888999999765544  3343 678889999999999999998887     99


Q ss_pred             EEEEeCCCC---cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec-CCCeE
Q 017642          158 VMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGSL  229 (368)
Q Consensus       158 i~vwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  229 (368)
                      |++|++...   +.+..+. |...|.++.|.  +.+++   .|+.|++||  .++.+..+..|...+..+.+.+ +++. 
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~-  157 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK-  157 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE-
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE-
Confidence            999998754   5566666 89999999994  44444   699999999  6788888889999999999998 6664 


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                       +++ ++.||.|++|+ .......+.. |...|.+++|+|++. |++++.||. |++||+++++.+..+..  |...|.+
T Consensus       158 -l~~-~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~  230 (313)
T 3odt_A          158 -FLT-ASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYC  230 (313)
T ss_dssp             -EEE-EETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEE
T ss_pred             -EEE-EECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEE
Confidence             333 56899999998 4455556665 899999999999998 999999999 99999999999999987  7889999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++|+|++ .|++++.||.|++||+.+++....
T Consensus       231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~  261 (313)
T 3odt_A          231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV  261 (313)
T ss_dssp             EEECTTS-CEEEEETTSEEEEECTTTCCEEEE
T ss_pred             EEEecCC-CEEEEecCCEEEEEECCCCceeEE
Confidence            9999999 588999999999999998865443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-31  Score=243.27  Aligned_cols=247  Identities=12%  Similarity=0.158  Sum_probs=202.2

Q ss_pred             ccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCC--------CcceEEEcccCCceeEEEEEEeCCeE-EEEec
Q 017642           79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPF--------REIFRRDFERGGGIGVVEMLFRCNIL-ALVGG  147 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~  147 (368)
                      .....|.+.|++++|+|+ +.+|++++ ++.|++|++...        .......+. .|...+.++.|++++. .++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEE
Confidence            345679999999999997 67889888 777999999761        122223443 7788899999999877 88888


Q ss_pred             CCCCCCCCCcEEEEeCCCCcE-------EEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCC---eEEEEEec
Q 017642          148 GPDPQYPLNKVMIWDDHQSRC-------IGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL---KLLHQIET  212 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~-------~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~---~~~~~~~~  212 (368)
                      +.|     |.|++||+..+..       ...+. |...|.+++|+| ++.+++   .|+.|++||++++   +.+..+..
T Consensus       201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            877     9999999987421       34444 889999999999 566665   5899999999887   56777888


Q ss_pred             cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECC
Q 017642          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       213 ~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~  289 (368)
                      |...+.+++|+|+++.+++  +|+.||.|++|+...  ..+..+..|...|.+++|+|+++ +|++++.||. |+|||+.
T Consensus       276 ~~~~v~~i~~~p~~~~~l~--tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~  352 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS  352 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEE--EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred             CCCCeEEEEeCCCCCCEEE--EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence            9999999999999986443  367899999998775  45777888999999999999995 7999999999 9999998


Q ss_pred             C--------------CceeEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCC
Q 017642          290 D--------------GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       290 ~--------------~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .              .+.+..+.+  |...|.+++|+|++. +|++++.||.|+||++.+..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             CCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            7              245555555  778899999999999 89999999999999997643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=253.34  Aligned_cols=242  Identities=10%  Similarity=-0.001  Sum_probs=190.8

Q ss_pred             CCCCCEEEEEEcCCC---------CEEEEEe--------------------CCeEEEEEecCCCcceE--EEcccCCcee
Q 017642           83 SPPPTLLHISFNQDH---------GCFAAGT--------------------DHGFRIYNCDPFREIFR--RDFERGGGIG  131 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g---------~~l~~~~--------------------d~~i~iw~~~~~~~~~~--~~~~~~~~~~  131 (368)
                      .+.+.|.+|+|+|++         ++||+|.                    |+.|+||++++.+....  ..+. .+...
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~  209 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGE  209 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCS
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCc
Confidence            457789999999886         6776644                    45699999987664321  2233 45667


Q ss_pred             EEEEEEeCC------eEEEEecCCCCCCCCCcEEEEeCCCCcE-----------EEEEe-cCCceeEEEEeeCccEEE--
Q 017642          132 VVEMLFRCN------ILALVGGGPDPQYPLNKVMIWDDHQSRC-----------IGELS-FRSEVRSVKLRRDRIIVV--  191 (368)
Q Consensus       132 ~~~~~~~~~------~~~~~s~~~d~~~~~~~i~vwd~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~--  191 (368)
                      +..+.|+++      +..+++++.|     |+|++||+.+++.           ...+. |...|.+++|++++.++.  
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs  284 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGF  284 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            889999986      4678888887     9999999987642           23555 889999999998775444  


Q ss_pred             eCCcEEEEEcCCCe-EEEEEeccCCCeeEE--EEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCc--ceEEEE
Q 017642          192 LEQKIFVYNFADLK-LLHQIETIANPKGLC--AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDS--RIACFA  265 (368)
Q Consensus       192 ~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~--~i~~v~  265 (368)
                      .||+|++||+++++ ....+..|...|.++  ++++++.. +++ +|+.|++|+||+... +....+.+|..  .|.+++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~-~la-S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT-VVS-TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC-EEE-EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe-EEE-EeccCCeEEEEECCCCCcccccccccccCcccceE
Confidence            69999999998764 455678899999998  56777633 344 477999999998765 44555666653  588999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       266 ~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      |+|+++.|++++.|+. |++||++++.++..+.+  |.+.|++|+|+|+|++|++|+.||+|++||+..+
T Consensus       363 fsp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          363 YCPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EETTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             eCCCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            9999999999999999 99999999998888887  8899999999999999999999999999998653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.5e-31  Score=239.73  Aligned_cols=246  Identities=12%  Similarity=0.142  Sum_probs=202.0

Q ss_pred             ccccCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCc-----ceEEEcccCCceeEEEEEEeCCe-EEEEecCCC
Q 017642           79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD  150 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d  150 (368)
                      .....|...|++++|+| ++++|++|+ |+.|+||++.....     .....+. .|...+.++.|++++ ..+++++.|
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCC
Confidence            34568999999999999 999999999 88899999987632     1123444 788899999999997 578888777


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEE--e-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE-eccCCC-eeEEEE
Q 017642          151 PQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANP-KGLCAV  222 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~  222 (368)
                           +.|++||+.+++.+..+  . |...|.+++|+|++.+++   .|+.|++||+++++.+..+ ..|.+. +..+.|
T Consensus       154 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  228 (402)
T 2aq5_A          154 -----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF  228 (402)
T ss_dssp             -----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred             -----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence                 99999999999999998  5 899999999999998887   5899999999999999888 677665 788999


Q ss_pred             ecCCCeEEEEeec---CCCCeEEEEecCcce--eeee-eccCcceEEEEECCCCCEEE-EEeCCCcEEEEEECCCCce-e
Q 017642          223 SQGVGSLVLVCPG---LQKGQVRVEHYASKR--TKFI-MAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTL-L  294 (368)
Q Consensus       223 ~~~~~~~~l~~~g---~~dg~i~i~~~~~~~--~~~~-~~~~~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd~~~~~~-~  294 (368)
                      ++++..  +++ |   +.|+.|++|+.....  +... ..|...+.+++|+|++++|+ +++.||. |++||+.+++. +
T Consensus       229 ~~~~~~--l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~  304 (402)
T 2aq5_A          229 VSEGKI--LTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFL  304 (402)
T ss_dssp             CSTTEE--EEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCE
T ss_pred             cCCCcE--EEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcce
Confidence            999864  333 4   689999999877632  2222 25777899999999999886 4557999 99999999884 5


Q ss_pred             EeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       295 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..+....+...|.+++|+|++.++++  .++.+++|++.+++
T Consensus       305 ~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          305 HYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            56665445689999999999998864  56799999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-30  Score=225.01  Aligned_cols=241  Identities=15%  Similarity=0.210  Sum_probs=199.4

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....|...|.+++|+|++++|++++ |+.|++|++..... .....+. .|...+.++.|+++  .+++++.|     +
T Consensus        53 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~--~l~~~~~d-----~  124 (313)
T 3odt_A           53 TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSFQDG--VVISGSWD-----K  124 (313)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred             EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEecCC--EEEEEeCC-----C
Confidence            34557889999999999999999999 77899999876432 2223443 78888999999655  44555555     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEec-cCCCeeEEEEecCCCeEE
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~  230 (368)
                      .|++||  .++.+..+. |...+.++++.+ ++..++   .|+.|++||  .++....+.. +...+.+++|++++.   
T Consensus       125 ~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~---  197 (313)
T 3odt_A          125 TAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH---  197 (313)
T ss_dssp             EEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE---
T ss_pred             CEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe---
Confidence            999999  677777777 999999999998 777776   589999999  4566677766 888999999999986   


Q ss_pred             EEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEE
Q 017642          231 LVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (368)
                      +++ ++.||.|++|+.. .+.+..+..|...|++++|+|++ .|++++.||. |++||+.+++.+..+..  |...|.++
T Consensus       198 ~~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~~  272 (313)
T 3odt_A          198 FIS-CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWSV  272 (313)
T ss_dssp             EEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEEE
T ss_pred             EEE-ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEEE
Confidence            333 6689999998876 46677788999999999999999 5889999999 99999999999999987  67799999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +|+|+++ +++++.||.|++||+++++....
T Consensus       273 ~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          273 DCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            9999998 56788999999999998776544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.2e-31  Score=229.55  Aligned_cols=206  Identities=11%  Similarity=0.190  Sum_probs=182.7

Q ss_pred             EEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCC-----CcEEEEEe-cCCceeEEEEeeCccEEE--
Q 017642          121 RRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQ-----SRCIGELS-FRSEVRSVKLRRDRIIVV--  191 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~--  191 (368)
                      ...+. +|...|.+++|+++. ..+++++.|     ++|++||+..     +.++..+. |...|.+++|++++.+++  
T Consensus        10 ~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D-----~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A           10 RGTLE-GHNGWVTSLATSAGQPNLLLSASRD-----KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEC-CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEc-cccceEEEEEccCCCccEEEEecCC-----ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            34565 899999999999854 678888887     9999999764     34566777 999999999999999888  


Q ss_pred             -eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCC-
Q 017642          192 -LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD-  269 (368)
Q Consensus       192 -~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~-  269 (368)
                       .|++|++||+++++.+..+.+|...|.+++|++++..  ++ +|+.|+.|++|+..+..+..+.+|...|.++.|+|. 
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~-s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--II-SGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE--EE-EEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE--EE-EEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCC
Confidence             5999999999999999999999999999999999884  44 377899999999999999999999999999999985 


Q ss_pred             -----CCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          270 -----GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       270 -----g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                           +.+|++++.|+. |++||+++++....+.+  |...|.+++|+|+|++|++++.||+|+|||+.+++..
T Consensus       161 ~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          161 KADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             -----CCEEEEEETTSC-EEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             CCCCCccEEEEEeCCCE-EEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence                 448999999999 99999999998888887  7889999999999999999999999999999887543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.1e-30  Score=264.81  Aligned_cols=243  Identities=16%  Similarity=0.213  Sum_probs=212.8

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|.+.|++++|+|+|++|++|+ |+.|+|||+.+++..  ..+. .|...+.+++|++++..+++++.|     +.
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~~~d-----~~  680 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCSAD-----KK  680 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEec-cCCCCEEEEEEecCCCEEEEEeCC-----Ce
Confidence            34568999999999999999999999 788999999877655  4454 788999999999999999998887     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |++||+.+++.+..+. |...|.+++|+++  +.+++   .|+.|++||+++++++..+.+|...|.+++|+|+++.  +
T Consensus       681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l  758 (1249)
T 3sfz_A          681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL--L  758 (1249)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE--E
T ss_pred             EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE--E
Confidence            9999999999999998 9999999999994  44555   5899999999999999999999999999999999985  3


Q ss_pred             EeecCCCCeEEEEecCcce-ee------------------------------------------------------e-ee
Q 017642          232 VCPGLQKGQVRVEHYASKR-TK------------------------------------------------------F-IM  255 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~-~~------------------------------------------------------~-~~  255 (368)
                      ++ |+.||.|++|+..... ..                                                      . ..
T Consensus       759 ~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          759 AS-CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EE-EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EE-EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            43 6689999999865321 11                                                      1 12


Q ss_pred             ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +|...|.+++|+|+++++++++.||. |++||+.+++.+..+.+  |...|.+++|+|+|++|++++.||.|++|++.+.
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~  914 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV  914 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence            67788999999999999999999999 99999999999988887  7889999999999999999999999999998754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-31  Score=248.77  Aligned_cols=240  Identities=10%  Similarity=0.073  Sum_probs=188.1

Q ss_pred             cCCCCCEEEEEEcCC------CCEEEEEe-CCeEEEEEecCCCcc---------eEEEcccCCceeEEEEEEeCCeEEEE
Q 017642           82 SSPPPTLLHISFNQD------HGCFAAGT-DHGFRIYNCDPFREI---------FRRDFERGGGIGVVEMLFRCNILALV  145 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~------g~~l~~~~-d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (368)
                      ..|.+.|.+++|+|+      +.+||+++ |+.|+|||+......         ....+. .|...+.+++|+++. .++
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~~-~la  281 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSPT-TVV  281 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSSS-EEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCCC-eEE
Confidence            457789999999997      57999998 888999999765421         012343 677889999998876 577


Q ss_pred             ecCCCCCCCCCcEEEEeCCCCc-EEEEEe-cCCceeEE--EEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCC--
Q 017642          146 GGGPDPQYPLNKVMIWDDHQSR-CIGELS-FRSEVRSV--KLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIAN--  215 (368)
Q Consensus       146 s~~~d~~~~~~~i~vwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~--  215 (368)
                      +++.|     |+|++||+++++ +...+. |...|.++  +|++++ .+++   .|++|+|||+++++++..+.+|..  
T Consensus       282 sgs~D-----gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          282 CGFKN-----GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             EEETT-----SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             EEeCC-----CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            77777     999999998774 445566 99999999  567887 7766   599999999999887777766643  


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC---
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG---  291 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~---  291 (368)
                      .+.+++|+|+++.  +++ ++.|+.|++|+... ..+..+.+|...|++|+|+|+|++|++|+.||. |+|||+..+   
T Consensus       357 ~v~~v~fsp~~~~--l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~  432 (524)
T 2j04_B          357 NLVPVVYCPQIYS--YIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLH  432 (524)
T ss_dssp             SCCCEEEETTTTE--EEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTT
T ss_pred             cccceEeCCCcCe--EEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhcc
Confidence            4788999999885  443 56799999988654 555778899999999999999999999999999 999986321   


Q ss_pred             -----------------------------------------ceeEeeEeccCcccEEEEEEecCCC---EEEEEeCCCeE
Q 017642          292 -----------------------------------------TLLQEVRRGADRAEIYSLAFSSNAQ---WLAVSSDKGTV  327 (368)
Q Consensus       292 -----------------------------------------~~~~~~~~~~~~~~v~~l~~sp~~~---~l~s~s~dg~i  327 (368)
                                                               ..+..+.+  |...|.+|+|+|++.   +|++|+.||.|
T Consensus       433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~~~g~v  510 (524)
T 2j04_B          433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSNSAGLL  510 (524)
T ss_dssp             CC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred             ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhccCceE
Confidence                                                     00111222  667899999999964   99999999999


Q ss_pred             EEEEccC
Q 017642          328 HVFNLKV  334 (368)
Q Consensus       328 ~iwd~~~  334 (368)
                      +||++.-
T Consensus       511 rlw~l~~  517 (524)
T 2j04_B          511 TLEYLSL  517 (524)
T ss_dssp             EEEECSC
T ss_pred             EEEEccc
Confidence            9999853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.9e-31  Score=249.18  Aligned_cols=240  Identities=14%  Similarity=0.202  Sum_probs=207.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCC----CcceEEEcccCCcee-EEEEEEeC--CeEEEEecCCCCCCCC
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----REIFRRDFERGGGIG-VVEMLFRC--NILALVGGGPDPQYPL  155 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~s~~~d~~~~~  155 (368)
                      .|.+.|.+++|+|+|++|++++++.|+||++++.    +..  ..+. .|... +.++.|++  ++..+++++.|     
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~d-----   87 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV--VQFT-GHGSSVVTTVKFSPIKGSQYLCSGDES-----   87 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE--EEEC-TTTTSCEEEEEECSSTTCCEEEEEETT-----
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccc--eEEe-cCCCceEEEEEECcCCCCCEEEEecCC-----
Confidence            6788999999999999999999989999999866    333  4554 78888 99999999  99999999887     


Q ss_pred             CcEEEEeCCCC--------cEEEEEe-cCCceeEEEEeeCccEEE---eC----CcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642          156 NKVMIWDDHQS--------RCIGELS-FRSEVRSVKLRRDRIIVV---LE----QKIFVYNFADLKLLHQIETIANPKGL  219 (368)
Q Consensus       156 ~~i~vwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~---~d----~~i~vwd~~~~~~~~~~~~~~~~v~~  219 (368)
                      |.|++||+.++        +.+..+. |...|.+++|+|++.+++   .+    +.|++||  .++.+..+..|...+.+
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~  165 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA  165 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence            99999999754        6666777 899999999999999888   23    5777777  67788889999999999


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCc---ceEEEEECCC-CCEEEEEeCCCcEEEEEECCCCcee
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDS---RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~---~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~  294 (368)
                      ++|+|+++..++  +++.|+.|++|+... +.+..+..|..   .|.+++|+|+ +++|++++.||. |++||+.+++.+
T Consensus       166 ~~~~~~~~~~l~--~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~  242 (615)
T 1pgu_A          166 CHLKQSRPMRSM--TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFL  242 (615)
T ss_dssp             EEECSSSSCEEE--EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEE
T ss_pred             EEECCCCCcEEE--EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCEe
Confidence            999999985333  366899999988665 55667888998   9999999999 999999999999 999999999999


Q ss_pred             Eee-E---eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          295 QEV-R---RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       295 ~~~-~---~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ..+ .   .  |...|.+++|+ ++++|++++.|+.|++||+++++..
T Consensus       243 ~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          243 KYIEDDQEP--VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             EECCBTTBC--CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEecccccc--cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            888 3   4  78899999999 9999999999999999999877644

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.1e-32  Score=247.29  Aligned_cols=249  Identities=12%  Similarity=0.124  Sum_probs=202.6

Q ss_pred             CcccccCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEecCCC------cceEE-EcccCCceeEEEEEEeCC-eEEEEe
Q 017642           77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFR------EIFRR-DFERGGGIGVVEMLFRCN-ILALVG  146 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~s  146 (368)
                      .......|...|++++|+|+ +++|++++ |+.|++||+...+      ..... .+. .|...+.++.|+++ ...+++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCCCCEEEECSSCTTEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc-CCCCCeeEEEeCCCCCcEEEE
Confidence            34455679999999999998 88999998 8889999998765      32221 222 67788899999998 677788


Q ss_pred             cCCCCCCCCCcEEEEeCCCCcEEEEEe-c------CCceeEEEEeeCc-cEEE---eCC---cEEEEEcCCC-eEEEEEe
Q 017642          147 GGPDPQYPLNKVMIWDDHQSRCIGELS-F------RSEVRSVKLRRDR-IIVV---LEQ---KIFVYNFADL-KLLHQIE  211 (368)
Q Consensus       147 ~~~d~~~~~~~i~vwd~~~~~~~~~~~-~------~~~v~~~~~~~~~-~~l~---~d~---~i~vwd~~~~-~~~~~~~  211 (368)
                      ++.|     +.|++||+++++.+..+. +      ...|.+++|+|++ .+++   .|+   .|++||++++ +.+..+.
T Consensus       184 ~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~  258 (416)
T 2pm9_A          184 AGSS-----NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN  258 (416)
T ss_dssp             ESSS-----SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC
T ss_pred             EcCC-----CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee
Confidence            7777     999999999999998887 4      7889999999997 4555   466   9999999986 6677777


Q ss_pred             -ccCCCeeEEEEec-CCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCC-CEEEEEeCCCcEEEEEE
Q 017642          212 -TIANPKGLCAVSQ-GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFN  287 (368)
Q Consensus       212 -~~~~~v~~~~~~~-~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g-~~l~s~~~dg~~i~iwd  287 (368)
                       .|...+.+++|+| +++.  +++ ++.||.|++|+... +.+..+..|...|.+++|+|++ .+|++++.||. |+|||
T Consensus       259 ~~~~~~v~~~~~s~~~~~~--l~s-~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~  334 (416)
T 2pm9_A          259 QGHQKGILSLDWCHQDEHL--LLS-SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQT  334 (416)
T ss_dssp             SCCSSCEEEEEECSSCSSC--EEE-EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEE
T ss_pred             cCccCceeEEEeCCCCCCe--EEE-EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEE
Confidence             8999999999999 6664  333 66899999988654 6677788999999999999999 89999999999 99999


Q ss_pred             CCCCceeEeeEe---------------------------------ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          288 TLDGTLLQEVRR---------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       288 ~~~~~~~~~~~~---------------------------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +.+++.......                                 ..+...+.+++|+|||++|++++.|+.|+||++.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          335 LQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             SCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            987654322110                                 00455778999999999999999999999999986


Q ss_pred             C
Q 017642          335 N  335 (368)
Q Consensus       335 ~  335 (368)
                      .
T Consensus       415 ~  415 (416)
T 2pm9_A          415 S  415 (416)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.7e-30  Score=235.48  Aligned_cols=241  Identities=14%  Similarity=0.179  Sum_probs=192.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEec---CCCcce--------EEEccc-CCceeEEEEE--EeCCeEEEEec
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCD---PFREIF--------RRDFER-GGGIGVVEML--FRCNILALVGG  147 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~---~~~~~~--------~~~~~~-~~~~~~~~~~--~~~~~~~~~s~  147 (368)
                      .|...|++++|+|++++|++|+ |+.|++||++   .++...        ...+.. .+...+.++.  +++++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            5899999999999999999999 8889999995   332221        111110 0344455555  56788888888


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEe-ccCCCeeEE
Q 017642          148 GPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE-TIANPKGLC  220 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~  220 (368)
                      +.|     +.|++||+++++.+..+.   |...|.+++|+|++.+++   .||.|++||+++++++..+. .+...|.++
T Consensus       189 ~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          189 TNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             ETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             eCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            887     999999999999998887   678999999999999888   58999999999999998886 677789999


Q ss_pred             EEecC--CCeEEEEeecCCCCeEEEEecCc-ceeeeeec--------------------------cCcceEEEEECCCCC
Q 017642          221 AVSQG--VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA--------------------------HDSRIACFALTQDGQ  271 (368)
Q Consensus       221 ~~~~~--~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~--------------------------~~~~i~~v~~sp~g~  271 (368)
                      +++|.  .+..++++ |+.||.|++|+... +.+..+.+                          |...|++++|+ +++
T Consensus       264 ~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          264 EVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            77764  23334554 78899999998864 43333332                          66678999999 788


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEecc-----------------------------------CcccEEEEEEecC--
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------------------------------DRAEIYSLAFSSN--  314 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~l~~sp~--  314 (368)
                      +|++|+.||. |++||+.+++.+..+..+.                                   |...|.+++|+++  
T Consensus       342 ~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          342 ILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             EEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            9999999999 9999999998877776421                                   6789999999998  


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 017642          315 AQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd  331 (368)
                      +.+|++|+.||.|+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            77999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=1.4e-29  Score=233.38  Aligned_cols=238  Identities=18%  Similarity=0.268  Sum_probs=197.8

Q ss_pred             ccccCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v-~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....|...| .++.+  ++++|++|+ |+.|++||+.+++..  ..+. +|...+.++.|++++ .+++++.|     |
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~-~h~~~V~~l~~~~~~-~l~s~s~d-----g  183 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGSTD-----R  183 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECSTT-EEEEEETT-----S
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--EEEe-CCCcCEEEEEEcCCC-EEEEEeCC-----C
Confidence            3556787775 66666  567999998 888999998876654  5564 789999999999888 66777776     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEee--CccEEE---eCCcEEEEEcCCCeE-----------------------E
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIFVYNFADLKL-----------------------L  207 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~---~d~~i~vwd~~~~~~-----------------------~  207 (368)
                      .|++||+.+++.+..+. |...|.+++|++  ++.+++   .|+.|++||+++++.                       +
T Consensus       184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            99999999999999998 999999999995  666666   599999999987652                       4


Q ss_pred             EEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      ..+.+|...+.++  +++++.  +++ |+.||.|++|+... +.+..+.+|...|.+++|+|++++|++|+.||. |++|
T Consensus       264 ~~~~~~~~~v~~~--~~~~~~--l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vw  337 (464)
T 3v7d_B          264 GVLRGHMASVRTV--SGHGNI--VVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIW  337 (464)
T ss_dssp             EEECCCSSCEEEE--EEETTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEE
T ss_pred             EEccCccceEEEE--cCCCCE--EEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEE
Confidence            4556666666654  667764  343 66899999988654 666778899999999999999999999999999 9999


Q ss_pred             ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       287 d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |+++++.+..+..  |...|.++.|+  +++|++++.||.|++||+.+++.
T Consensus       338 d~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          338 DLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  384 (464)
T ss_dssp             ETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             ECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence            9999999999987  78899999997  58999999999999999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=4.7e-29  Score=229.91  Aligned_cols=239  Identities=16%  Similarity=0.225  Sum_probs=198.9

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLN  156 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~  156 (368)
                      ....|...|.+++|++++ +|++|+ |+.|++||+++++..  ..+. .|...+.++.+.  +++..+++++.|     +
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d-----~  227 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFE-GHNSTVRCLDIVEYKNIKYIVTGSRD-----N  227 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEEESSSCEEEEEEETT-----S
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--EEEC-CCCCccEEEEEecCCCCCEEEEEcCC-----C
Confidence            345799999999999988 788888 888999999876654  4454 677777777776  677888888887     9


Q ss_pred             cEEEEeCCCCcE-----------------------EEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEE
Q 017642          157 KVMIWDDHQSRC-----------------------IGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQ  209 (368)
Q Consensus       157 ~i~vwd~~~~~~-----------------------~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~  209 (368)
                      .|++||+.+++.                       +..+. |...|.++  ++++.+++   .|+.|++||+++++++..
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  305 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI  305 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            999999987753                       33344 67777776  56666666   599999999999999999


Q ss_pred             EeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      +.+|...+.+++|+++++.  +++ |+.||.|++|+.. ++.+..+.+|...|.+++|+  +++|++++.||. |++||+
T Consensus       306 ~~~~~~~v~~~~~~~~~~~--l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~  379 (464)
T 3v7d_B          306 LSGHTDRIYSTIYDHERKR--CIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDA  379 (464)
T ss_dssp             ECCCSSCEEEEEEETTTTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEET
T ss_pred             ecCCCCCEEEEEEcCCCCE--EEE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEEC
Confidence            9999999999999999985  333 6789999998874 57777889999999999997  579999999999 999999


Q ss_pred             CCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      .+++....+.   +...+..++|++++++|++++ ||.|++||+++++...
T Consensus       380 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          380 NDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             TTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred             CCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence            9988776664   456788899999999999998 8999999999987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.4e-31  Score=235.73  Aligned_cols=241  Identities=10%  Similarity=0.058  Sum_probs=182.4

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC-cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ....|...|.+++|+|++++|++++ |+.|++||+...+ ......+. .|...+.++.|++++..+++++.|     +.
T Consensus        50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~  123 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGA-----RV  123 (377)
T ss_dssp             CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESS-----SC
T ss_pred             EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCCCCEEEEEecC-----Ce
Confidence            4457999999999999999999999 8889999998766 22334454 788899999999999888888887     99


Q ss_pred             EEEEeCCCCc---EEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcC------------------CCeEEEEEe
Q 017642          158 VMIWDDHQSR---CIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA------------------DLKLLHQIE  211 (368)
Q Consensus       158 i~vwd~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~------------------~~~~~~~~~  211 (368)
                      |++||+++++   ....+.  |...|.+++|+|++.+++   .|+.|++||++                  .++++..+ 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            9999999886   355665  899999999999998888   58999999995                  35566666 


Q ss_pred             ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-e----eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-R----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       212 ~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~----~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      .|...+.+++|+|+++.  +++ |+.||.|++|+.... .    +..+..|...|.+++|+|++++|++++.++.  .+|
T Consensus       203 ~~~~~v~~~~~sp~~~~--l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~  277 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNA--LAY-AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP--ILL  277 (377)
T ss_dssp             CCSSSEEEEEECTTSSC--EEE-EETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE--EEE
T ss_pred             cCCceEEEEEECCCCCE--EEE-EeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE--EEE
Confidence            88899999999999985  443 668999999887653 3    5778899999999999999999999987765  577


Q ss_pred             ECCCCc--e-------------------------e---------EeeE--------------eccCcccEEEEEEecCC-
Q 017642          287 NTLDGT--L-------------------------L---------QEVR--------------RGADRAEIYSLAFSSNA-  315 (368)
Q Consensus       287 d~~~~~--~-------------------------~---------~~~~--------------~~~~~~~v~~l~~sp~~-  315 (368)
                      +.....  .                         .         ..+.              ...|...|+++.+.+.. 
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~  357 (377)
T 3dwl_C          278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP  357 (377)
T ss_dssp             CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred             EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence            664211  0                         0         0000              01177899999976543 


Q ss_pred             C---EEEEEeCCCeEEEEEc
Q 017642          316 Q---WLAVSSDKGTVHVFNL  332 (368)
Q Consensus       316 ~---~l~s~s~dg~i~iwd~  332 (368)
                      .   .|++++.||.|+|||+
T Consensus       358 ~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          358 GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             TEEEEEEEEETTSEEEEECC
T ss_pred             CceEEEEeecCCCcEEEecC
Confidence            3   6999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.8e-29  Score=227.14  Aligned_cols=238  Identities=13%  Similarity=0.099  Sum_probs=195.6

Q ss_pred             CCCCC--EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           83 SPPPT--LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        83 ~h~~~--v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      .|...  +.++.|++ +.+++++.|+.|++|++.+++.......  .+...+.++.|++++..+++++.|     |.|++
T Consensus        89 ~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~i  160 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGN-----GLVDI  160 (401)
T ss_dssp             TCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             CCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeec--CCCCCEEEEEECCCCCEEEEECCC-----CeEEE
Confidence            44443  55577775 3455555599999999988776544333  578889999999999888888887     99999


Q ss_pred             EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ||+.+++.+..+. |...|.+++|++  .+++   .|+.|++||++ .+..+..+..|...+.+++|+++++.  +++ |
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s-~  235 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ--LAS-G  235 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-E
T ss_pred             EECcCCeEEEEecCCCCceEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE--EEE-E
Confidence            9999999999997 999999999954  4444   69999999998 56778888899999999999999875  443 6


Q ss_pred             CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCC-EEEEEe--CCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      +.|+.|++|+... ..+..+..|...|.+++|+|++. ++++++  .|+. |++||+.+++.+..+.   +...|.+++|
T Consensus       236 ~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~  311 (401)
T 4aez_A          236 GNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIW  311 (401)
T ss_dssp             ETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEE
T ss_pred             eCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEE
Confidence            6899999988765 55667788999999999999775 666655  7999 9999999999998886   4568999999


Q ss_pred             ecCCCEEEEE--eCCCeEEEEEccCCCC
Q 017642          312 SSNAQWLAVS--SDKGTVHVFNLKVNSG  337 (368)
Q Consensus       312 sp~~~~l~s~--s~dg~i~iwd~~~~~~  337 (368)
                      +|++++|+++  +.||.|++||+.+++.
T Consensus       312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSIWSYSSSGL  339 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEEEEEETTEE
T ss_pred             CCCCCeEEEEeecCCCcEEEEecCCccc
Confidence            9999999985  4899999999988543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=231.12  Aligned_cols=237  Identities=8%  Similarity=0.081  Sum_probs=194.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCC---cceEEEcc-------------------------------------
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---EIFRRDFE-------------------------------------  125 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~---~~~~~~~~-------------------------------------  125 (368)
                      .++.+++|+++|++|+++.++.|++||+.+++   ........                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            47889999999998888888899999998877   22111100                                     


Q ss_pred             --------------cCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCC--CCcEEEEEe---cCCceeEEEEee
Q 017642          126 --------------RGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDH--QSRCIGELS---FRSEVRSVKLRR  185 (368)
Q Consensus       126 --------------~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~---~~~~v~~~~~~~  185 (368)
                                    ..+...+.++.|++++..+ ++++.|     +.|++||+.  +++.+..+.   +...|.+++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                          0122258999999998875 777777     999999999  888888774   678999999999


Q ss_pred             CccEEE---eCCcEEEEEcCCCeEEE----EEeccCCCeeEEEEecC---CCeEEEEeecCCCCeEEEEecCc-ceeee-
Q 017642          186 DRIIVV---LEQKIFVYNFADLKLLH----QIETIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYAS-KRTKF-  253 (368)
Q Consensus       186 ~~~~l~---~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~l~~~g~~dg~i~i~~~~~-~~~~~-  253 (368)
                      ++.+++   .++.|++|++.+++...    .+.+|...+.+++|+|+   ++.  +++ |+.|+.|++|+... ..+.. 
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~--l~s-~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF--IIT-SDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE--EEE-EETTSCEEEEEESCTTCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE--EEE-EcCCCcEEEEECCCCceeeee
Confidence            998888   47999999998876544    67789999999999999   653  443 67899999998765 44444 


Q ss_pred             eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-----------------------cCcccEEEEE
Q 017642          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----------------------ADRAEIYSLA  310 (368)
Q Consensus       254 ~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~l~  310 (368)
                      +.+|...|.+++|+ ++++|++++.|+. |+|||+.+++.+..+..+                       .....|.+++
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~  314 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII  314 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence            56899999999999 9999999999999 999999999988887632                       1235689999


Q ss_pred             EecCCCEEEEEe-CCCeEEEEEc
Q 017642          311 FSSNAQWLAVSS-DKGTVHVFNL  332 (368)
Q Consensus       311 ~sp~~~~l~s~s-~dg~i~iwd~  332 (368)
                      |+|++++|++++ .|+.|+||++
T Consensus       315 ~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          315 KSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCCEEEEEECCCCeEEEEEe
Confidence            999999999998 8999999999

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.4e-29  Score=231.67  Aligned_cols=235  Identities=14%  Similarity=0.303  Sum_probs=190.1

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|  ++++|++|+ |+.|++||+.+++..  ..+. .|...+.++.++++  .+++++.|     +.
T Consensus       167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~--~l~s~s~d-----g~  234 (435)
T 1p22_A          167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML--NTLI-HHCEAVLHLRFNNG--MMVTCSKD-----RS  234 (435)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE--EEEC-CCCSCEEEEECCTT--EEEEEETT-----SC
T ss_pred             EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE--EEEc-CCCCcEEEEEEcCC--EEEEeeCC-----Cc
Confidence            445679999999999  788999999 888999999877654  4454 78888999999866  45555666     99


Q ss_pred             EEEEeCCCCcEE---EEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          158 VMIWDDHQSRCI---GELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       158 i~vwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      |++||+.+++..   ..+. |...|.++++  ++.+++   .|+.|++||+++++.+..+..|...+.++.+.  ++  +
T Consensus       235 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~--~  308 (435)
T 1p22_A          235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR--L  308 (435)
T ss_dssp             EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT--E
T ss_pred             EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CC--E
Confidence            999999887654   4444 8899999999  455555   58999999999999999999999999988884  44  3


Q ss_pred             EEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc---------eeEeeEec
Q 017642          231 LVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT---------LLQEVRRG  300 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~---------~~~~~~~~  300 (368)
                      +++ |+.||.|++|+.. +..+..+.+|...|.+++|  ++++|++|+.||. |++||+.+++         .+..+.. 
T Consensus       309 l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~-  383 (435)
T 1p22_A          309 VVS-GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE-  383 (435)
T ss_dssp             EEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC-
T ss_pred             EEE-EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeeccC-
Confidence            443 6789999998876 5677788999999999999  7889999999999 9999998766         7777776 


Q ss_pred             cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                       |.+.|.+++|  ++.+|++++.||.|++||+.+.....
T Consensus       384 -h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          384 -HSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             -CSSCCCCEEE--CSSCEEECCSSSEEEEEC--------
T ss_pred             -CCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence             7889999999  78899999999999999998876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=7.2e-29  Score=226.92  Aligned_cols=232  Identities=15%  Similarity=0.300  Sum_probs=193.8

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|...|+++.|  ++++|++|+ |+.|++||+.+++..  ..+. +|...+.++.++  +..+++++.|     |.|+
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~l~~~--~~~l~sg~~d-----g~i~  196 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQYD--ERVIITGSSD-----STVR  196 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEECC--SSEEEEEETT-----SCEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--EEEc-CCCCcEEEEEEC--CCEEEEEcCC-----CeEE
Confidence            3467778999887  789999999 888999999876654  4454 788889999994  4466666666     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE---EEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +||+.+++.+..+. |...|.+++|+++ .++.  .|+.|++||+++++..   ..+.+|...+.++++  +++.  +++
T Consensus       197 vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~s  271 (435)
T 1p22_A          197 VWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY--IVS  271 (435)
T ss_dssp             EEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE--EEE
T ss_pred             EEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCE--EEE
Confidence            99999999999998 9999999999754 3333  6999999999887654   667788889998888  5553  443


Q ss_pred             ecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                       |+.||.|++|+... +.+..+.+|...|.++.|  ++++|++|+.||. |++||+++++.+..+..  |...|.+++| 
T Consensus       272 -~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~-  344 (435)
T 1p22_A          272 -ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF-  344 (435)
T ss_dssp             -EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC-
T ss_pred             -EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe-
Confidence             66899999988654 667778899999999999  5789999999999 99999999999999987  7889999999 


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                       ++.+|++|+.||.|++||+.+++.
T Consensus       345 -~~~~l~sg~~dg~i~vwd~~~~~~  368 (435)
T 1p22_A          345 -DNKRIVSGAYDGKIKVWDLVAALD  368 (435)
T ss_dssp             -CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred             -cCCEEEEEeCCCcEEEEECCCCCC
Confidence             789999999999999999987763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.3e-28  Score=209.69  Aligned_cols=241  Identities=11%  Similarity=0.094  Sum_probs=167.6

Q ss_pred             CEEEEEEcCCCC---EEEEEeCCeEEEEEecCC---CcceEEEcc----------------------cCCceeEEEEEEe
Q 017642           87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPF---REIFRRDFE----------------------RGGGIGVVEMLFR  138 (368)
Q Consensus        87 ~v~~~~~s~~g~---~l~~~~d~~i~iw~~~~~---~~~~~~~~~----------------------~~~~~~~~~~~~~  138 (368)
                      .+.++-|-..|-   .++++++..|++|+....   +....-.+.                      +-+...+..++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            567777765544   778888999999999876   222221111                      1122245566666


Q ss_pred             CC----eEEEEecCCCC---------------CCCCCcEEEEeC-CCCcEEEEEe-cCCceeEEEEee---CccEEE---
Q 017642          139 CN----ILALVGGGPDP---------------QYPLNKVMIWDD-HQSRCIGELS-FRSEVRSVKLRR---DRIIVV---  191 (368)
Q Consensus       139 ~~----~~~~~s~~~d~---------------~~~~~~i~vwd~-~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~---  191 (368)
                      ++    +..+++++.+.               ...++.|++|++ .+|+.+..+. |...+..++|++   ++.+++   
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS  200 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT  200 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence            77    55555543210               012488999998 4577777776 888888889988   668888   


Q ss_pred             eCCcEEEEEcCCCeEEEEEeccCC---CeeEEEEecCCCeEEE---------EeecCCCCeEEEEecCccee-eee----
Q 017642          192 LEQKIFVYNFADLKLLHQIETIAN---PKGLCAVSQGVGSLVL---------VCPGLQKGQVRVEHYASKRT-KFI----  254 (368)
Q Consensus       192 ~d~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l---------~~~g~~dg~i~i~~~~~~~~-~~~----  254 (368)
                      .|++|+|||+++|++++++.++..   .+.+++|+|+|..++.         +.+|+.|++|++|+...... ..+    
T Consensus       201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~  280 (356)
T 2w18_A          201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL  280 (356)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence            599999999999999999976543   4566789999875432         23588999999998776543 222    


Q ss_pred             -eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc-EEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          255 -MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       255 -~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                       .+|...+.+..+  ++.++++++.|++ |+|||+.+++++.++.+  |... +..++|+|||++|++|+.|++|+|||+
T Consensus       281 p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          281 PPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             356655554444  4789999999999 99999999999999987  5444 446899999999999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.1e-29  Score=226.92  Aligned_cols=240  Identities=11%  Similarity=0.131  Sum_probs=193.1

Q ss_pred             EEEEEEcCCCCEEEE-Ee-CCeEEEEEecCCCcc--eEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEe
Q 017642           88 LLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        88 v~~~~~s~~g~~l~~-~~-d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ...++++|+...++. ++ ++.|+||++......  ....+. +|...+.++.|++ ++..+++++.|     |.|++||
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw~  110 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSED-----CTVMVWE  110 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETT-----SEEEEEE
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEEE
Confidence            345789988765543 45 778999998654321  112343 7889999999999 88888888887     9999999


Q ss_pred             CCCC-------cEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEE--eccCCCeeEEEEecCCCe
Q 017642          163 DHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       163 ~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  228 (368)
                      +.++       +.+..+. |...|.+++|+|++ .+++   .|+.|++||+++++.+..+  ..|...+.+++|+++++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            9987       5677777 99999999999998 4665   5899999999999999999  789999999999999985


Q ss_pred             EEEEeecCCCCeEEEEecCc-ceeeee-eccCcc-eEEEEECCCCCEEEEE---eCCCcEEEEEECCCCceeEeeEeccC
Q 017642          229 LVLVCPGLQKGQVRVEHYAS-KRTKFI-MAHDSR-IACFALTQDGQLLATS---STKGTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~-~~~~~~-~~~~~~-i~~v~~sp~g~~l~s~---~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                        +++ ++.||.|++|+... +.+..+ ..|.+. +.++.|+|++++|++|   +.|+. |++||+++++.........+
T Consensus       191 --l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~~~  266 (402)
T 2aq5_A          191 --ICT-SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQELDT  266 (402)
T ss_dssp             --EEE-EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEECCC
T ss_pred             --EEE-EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEeccC
Confidence              333 56899999988665 555566 678765 8999999999999999   78999 99999998765222222225


Q ss_pred             cccEEEEEEecCCCEEEE-EeCCCeEEEEEccCCCC
Q 017642          303 RAEIYSLAFSSNAQWLAV-SSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       303 ~~~v~~l~~sp~~~~l~s-~s~dg~i~iwd~~~~~~  337 (368)
                      ...+.+++|+|++++|++ ++.||.|++||+.+++.
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            678999999999999865 55799999999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.6e-29  Score=246.06  Aligned_cols=239  Identities=10%  Similarity=0.087  Sum_probs=191.0

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..+|...|++++|+|+|++||+|+ |+.|+||+....+..  ..+  .+...|.++.|++ +..+++++.|     +.|+
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~--~~~~~V~~l~fsp-g~~L~S~s~D-----~~v~   82 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKL--EDRSAIKEMRFVK-GIYLVVINAK-----DTVY   82 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EEC--SSCCCEEEEEEET-TTEEEEEETT-----CEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEc--CCCCCEEEEEEcC-CCEEEEEECc-----CeEE
Confidence            457899999999999999999999 888999997654432  333  5677899999999 5578888877     9999


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE-----------EEEeccCCCeeEEEEecC
Q 017642          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-----------HQIETIANPKGLCAVSQG  225 (368)
Q Consensus       160 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~  225 (368)
                      +||+.+++++..+.+...|++++|+|++.+++   .||.|++||++++++.           ..+.+|...|.+++|+|+
T Consensus        83 lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           83 VLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             EEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             EEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999999999999889999999999999888   5999999999988764           223557889999999997


Q ss_pred             CCeEEEEeecCCCCeEEEEecCcc-eeeeeecc------------------CcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAH------------------DSRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~------------------~~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      +... +++ |+.||.| +|+.... .+..+..|                  ...|++++|+|+|++|++++.||. |+||
T Consensus       163 ~~~~-l~~-g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lW  238 (902)
T 2oaj_A          163 DIGT-VLI-SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFW  238 (902)
T ss_dssp             EEEE-EEE-ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEE
T ss_pred             CCCE-EEE-EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEE
Confidence            6443 333 6789999 9987664 34445444                  577999999999999999999999 9999


Q ss_pred             ECCCCceeEe--eE---ec-----------cCcccEEEEEEec----CC-CEEEEEeCC-----CeEEEEEcc
Q 017642          287 NTLDGTLLQE--VR---RG-----------ADRAEIYSLAFSS----NA-QWLAVSSDK-----GTVHVFNLK  333 (368)
Q Consensus       287 d~~~~~~~~~--~~---~~-----------~~~~~v~~l~~sp----~~-~~l~s~s~d-----g~i~iwd~~  333 (368)
                      |+++++++..  +.   .+           .|...|.+++|++    ++ .+|++|+.|     ..|++|++.
T Consensus       239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~  311 (902)
T 2oaj_A          239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG  311 (902)
T ss_dssp             ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred             ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence            9999987653  21   11           1345799999964    43 567777665     379999863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=3.3e-29  Score=217.40  Aligned_cols=199  Identities=12%  Similarity=0.164  Sum_probs=168.7

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC--CcEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFV  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~--~~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~v  198 (368)
                      +|...|.+++|++++..+++++.|     +.|++||+..  ++.+..+. |.+.|.+++|+++  +.+++   .|++|++
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             CCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            788899999999999999999988     9999999874  36677777 9999999999863  77777   5999999


Q ss_pred             EEcCCCe--EEEEEeccCCCeeEEEEecC--CCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCC--
Q 017642          199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQD--  269 (368)
Q Consensus       199 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~--  269 (368)
                      ||+++++  .+..+..|...|.+++|+|+  +.  ++++ |+.|+.|++|+....   ....+.+|...|.+++|+|+  
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--MLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS--EEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCc--EEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence            9998874  55667788999999999998  54  3443 678999999987653   23567789999999999997  


Q ss_pred             -----------CCEEEEEeCCCcEEEEEECCCCc----eeEeeEeccCcccEEEEEEecCC---CEEEEEeCCCeEEEEE
Q 017642          270 -----------GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNA---QWLAVSSDKGTVHVFN  331 (368)
Q Consensus       270 -----------g~~l~s~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~v~~l~~sp~~---~~l~s~s~dg~i~iwd  331 (368)
                                 +++|++|+.|+. |+|||+++++    ....+.+  |...|.+++|+|++   .+|++++.|++|+|||
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             -----------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence                       579999999999 9999998776    4556666  78899999999985   8999999999999999


Q ss_pred             ccCCC
Q 017642          332 LKVNS  336 (368)
Q Consensus       332 ~~~~~  336 (368)
                      +++..
T Consensus       236 ~~~~~  240 (297)
T 2pm7_B          236 QDNEQ  240 (297)
T ss_dssp             ESSTT
T ss_pred             eCCCC
Confidence            98753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=9.8e-30  Score=261.16  Aligned_cols=246  Identities=17%  Similarity=0.273  Sum_probs=214.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+...|.+++|+|+|+++++|+ ++.|++|++.+....  ..+. .|...+.++.|++++..+++++.|     +.|++|
T Consensus       959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~--~~~~-~h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vw 1030 (1249)
T 3sfz_A          959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF--SSGV-GHKKAVRHIQFTADGKTLISSSED-----SVIQVW 1030 (1249)
T ss_dssp             ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE--EECC-CCSSCCCCEEECSSSSCEEEECSS-----SBEEEE
T ss_pred             cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee--eecc-cCCCceEEEEECCCCCEEEEEcCC-----CEEEEE
Confidence            3466899999999999999999 777999999876654  4454 788889999999999999999988     999999


Q ss_pred             eCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (368)
Q Consensus       162 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg  239 (368)
                      |+.+++......|...|.++.|++++.+++  .|+.|++||+.+++.+..+..|...+.+++|+|+++.+  ++ ++.||
T Consensus      1031 d~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l--~s-~s~d~ 1107 (1249)
T 3sfz_A         1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF--SS-TSADK 1107 (1249)
T ss_dssp             ETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSC--EE-ECCSS
T ss_pred             ECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEE--EE-EcCCC
Confidence            999998876666999999999999998877  69999999999999999999999999999999999863  33 66899


Q ss_pred             eEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee---------EeccCcccEEEE
Q 017642          240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV---------RRGADRAEIYSL  309 (368)
Q Consensus       240 ~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~---------~~~~~~~~v~~l  309 (368)
                      .|++|+... ..+..+.+|...|++++|+|+|++|++++.||. |++||+.+++.+..+         ..  |.+.|.++
T Consensus      1108 ~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l 1184 (1249)
T 3sfz_A         1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGTAT--HGGWVTDV 1184 (1249)
T ss_dssp             CCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSSSCCCCCCCCCC---------CCSCCCEE
T ss_pred             cEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceEEEeccccccccccc--cCceEEEE
Confidence            999988764 566778899999999999999999999999999 999999999887665         33  77889999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      +|+|||++|++++  |.|++||+.+++.......+
T Consensus      1185 ~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A         1185 CFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp             EECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCS
T ss_pred             EECCCCCEEEECC--CeEEEEECCCCceeeeeecc
Confidence            9999999999885  89999999998876554433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5.4e-29  Score=219.99  Aligned_cols=234  Identities=12%  Similarity=0.129  Sum_probs=192.4

Q ss_pred             cccCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEe-cCCCcceEEEcccC--CceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           80 TSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNC-DPFREIFRRDFERG--GGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      ....|...|++++|+|+++ +|++|+ |+.|++|++ .....   ..+. .  |...+.++.|++ +..+++++.|    
T Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d----  121 (342)
T 1yfq_A           51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALT-NNEANLGICRICKYG-DDKLIAASWD----  121 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECB-SCCCCSCEEEEEEET-TTEEEEEETT----
T ss_pred             eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---Eecc-ccCCCCceEEEEeCC-CCEEEEEcCC----
Confidence            3447899999999999999 999998 888999998 76543   3443 6  888899999998 7777777777    


Q ss_pred             CCcEEEEeCCC---------CcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCC-CeE--EEEEeccCCCeeEEE
Q 017642          155 LNKVMIWDDHQ---------SRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKL--LHQIETIANPKGLCA  221 (368)
Q Consensus       155 ~~~i~vwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~-~~~--~~~~~~~~~~v~~~~  221 (368)
                       +.|++||+.+         ++++..+.+...|.+++|++++.+++ .|+.|++||+++ +..  ......+...+.+++
T Consensus       122 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~  200 (342)
T 1yfq_A          122 -GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA  200 (342)
T ss_dssp             -SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred             -CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE
Confidence             9999999987         77666777899999999999983223 689999999988 542  334446778899999


Q ss_pred             Eec-CCCeEEEEeecCCCCeEEEEecCc-------ceeeeeeccCc---------ceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          222 VSQ-GVGSLVLVCPGLQKGQVRVEHYAS-------KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       222 ~~~-~~~~~~l~~~g~~dg~i~i~~~~~-------~~~~~~~~~~~---------~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      |++ +++.  +++ |+.||.|++|+...       .....+..|..         .|.+++|+|++++|++++.||. |+
T Consensus       201 ~~~~~~~~--l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~  276 (342)
T 1yfq_A          201 LLPKEQEG--YAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-IS  276 (342)
T ss_dssp             ECSGGGCE--EEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EE
T ss_pred             ECCCCCCE--EEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EE
Confidence            999 8875  333 56799999987654       44556677755         9999999999999999999999 99


Q ss_pred             EEECCCCceeEeeEeccC-cccEEEEEEecCCCEEEEEeCCCe-EEEEE
Q 017642          285 IFNTLDGTLLQEVRRGAD-RAEIYSLAFSSNAQWLAVSSDKGT-VHVFN  331 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~-i~iwd  331 (368)
                      +||+.+++.+..+..  | ...|.+++  |++++|++++.||. .+.|.
T Consensus       277 vwd~~~~~~~~~~~~--~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          277 CWNLQTRKKIKNFAK--FNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEETTTTEEEEECCC--CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             EEcCccHhHhhhhhc--ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            999999999988887  5 88999999  99999999999998 44444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=9.3e-28  Score=220.16  Aligned_cols=237  Identities=16%  Similarity=0.271  Sum_probs=196.3

Q ss_pred             ccccCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v-~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .....|.+.| .+  ++++|++|++|+ |+.|++||+.+++..  ..+. +|...+.++.++++  .+++++.|     |
T Consensus       112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~--~l~s~~~d-----g  179 (445)
T 2ovr_B          112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD-----R  179 (445)
T ss_dssp             EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred             EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEE--EEEc-CCCCCEEEEEecCC--EEEEEeCC-----C
Confidence            4556788865 55  455689999999 888999999876654  5565 78889999999865  45555665     9


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      .|++||+.+++.+..+. |...|.++.++++....+ .|+.|++||+++++.+..+..|...+.++.+  +++.  +++ 
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~-  254 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRR--VVS-  254 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSC--EEE-
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCE--EEE-
Confidence            99999999999999988 999999999975432222 6999999999999999999999999999888  5654  343 


Q ss_pred             cCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       235 g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      |+.||.|++|+... ..+..+.+|...|.+++|  ++.+|++++.||. |++||+++++.+..+..  |...+.++.++ 
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~~-  328 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMELK-  328 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEEE-
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEEe-
Confidence            66899999988654 566778899999999999  8899999999999 99999999999988887  77788888774 


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          314 NAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                       +++|++++.||.|++||+++++...
T Consensus       329 -~~~l~~~~~dg~i~vwd~~~~~~~~  353 (445)
T 2ovr_B          329 -DNILVSGNADSTVKIWDIKTGQCLQ  353 (445)
T ss_dssp             -TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             -CCEEEEEeCCCeEEEEECCCCcEEE
Confidence             6799999999999999998876543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.6e-29  Score=219.23  Aligned_cols=228  Identities=9%  Similarity=0.049  Sum_probs=174.9

Q ss_pred             EEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC------
Q 017642           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------  164 (368)
Q Consensus        92 ~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~------  164 (368)
                      .+.+++.+|++|+ |+.|++||+++++......     ...+..+.+++.   +++++.|     +.|++|+..      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEe
Confidence            4456788999999 8899999998776653322     233445556666   6777777     999999654      


Q ss_pred             ---CCcEEEEEe--cCCceeEEEEee--CccEEE---eCCcEEEEEcCCCeEEEEEec-cCCCeeEEEEecCCCeEEEEe
Q 017642          165 ---QSRCIGELS--FRSEVRSVKLRR--DRIIVV---LEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       165 ---~~~~~~~~~--~~~~v~~~~~~~--~~~~l~---~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~  233 (368)
                         +++.+..+.  |.+.|.+++|+|  ++.+++   .|+.|++||+++++.+..... +...+.+++|+|++..  +++
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~--las  187 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL--LAL  187 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE--EEE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE--EEE
Confidence               555565555  668899999999  998888   599999999999988776643 4557999999999974  443


Q ss_pred             ecCCCCeEEEEecCcce-e-eeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-CcccE--E
Q 017642          234 PGLQKGQVRVEHYASKR-T-KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-DRAEI--Y  307 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~-~-~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-~~~~v--~  307 (368)
                       |+.||.|++|+..... + ..+.. |...|++++|+|+|.+|++++. +. |+|||+++++.+..+.... |...+  .
T Consensus       188 -g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~  264 (343)
T 3lrv_A          188 -YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVGTLAYPTYTIPEFKTGTV  264 (343)
T ss_dssp             -ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred             -EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCcceeecccccccccccce
Confidence             7799999998877644 3 46777 9999999999999999999995 48 9999999988765554310 12233  4


Q ss_pred             EEEEecCCCEEEEEeC-CCeEEEEEccCCCC
Q 017642          308 SLAFSSNAQWLAVSSD-KGTVHVFNLKVNSG  337 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~  337 (368)
                      +++|+|+|++|++++. |+.|+||++++...
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            6999999999999988 99999999976644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=2.2e-28  Score=240.75  Aligned_cols=243  Identities=12%  Similarity=0.169  Sum_probs=205.3

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+|+|++|++|+ |+.|+|||+.+++..  ..+. .|...+.++.|++++..+++++.|     |.
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g~  120 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--VDFE-AHPDYIRSIAVHPTKPYVLSGSDD-----LT  120 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----SE
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEEEEEEeCCCCEEEEEcCC-----CE
Confidence            34457999999999999999999999 778999999877655  4453 788889999999999888888887     99


Q ss_pred             EEEEeCCCC-cEEEEEe-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccC-CCeeEEEEec--CCCe
Q 017642          158 VMIWDDHQS-RCIGELS-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ--GVGS  228 (368)
Q Consensus       158 i~vwd~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~  228 (368)
                      |++||+.++ .....+. |...|.+++|+| ++..++   .||.|++||+++++....+..+. ..+..++|+|  ++..
T Consensus       121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  200 (814)
T 3mkq_A          121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY  200 (814)
T ss_dssp             EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred             EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence            999999887 6666676 899999999999 777776   58999999998888777776554 7899999999  6653


Q ss_pred             EEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE
Q 017642          229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                        +++ |+.||.|++|+... ..+..+..|...|.+++|+|++++|++++.||. |++||+.+++.+..+..  +...+.
T Consensus       201 --l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~  274 (814)
T 3mkq_A          201 --MIT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSW  274 (814)
T ss_dssp             --EEE-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEE
T ss_pred             --EEE-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEE
Confidence              444 67899999988654 566778889999999999999999999999999 99999999999988887  677999


Q ss_pred             EEEEecCCC--EEEEEeCCCeEEEEEccCCC
Q 017642          308 SLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       308 ~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +++|+|++.  +++++ .++.+.+|++....
T Consensus       275 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          275 CIATHPTGRKNYIASG-FDNGFTVLSLGNDE  304 (814)
T ss_dssp             EEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred             EEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence            999999987  45554 56679999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=6.5e-29  Score=224.11  Aligned_cols=239  Identities=13%  Similarity=0.025  Sum_probs=166.0

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEE---EcccCCceeEEEEEEeC--------CeEEEEecCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRC--------NILALVGGGP  149 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~s~~~  149 (368)
                      ..|...+....+++++.+|++++ |+.|+|||++..+.....   .+. +|...|.++.|+|        ++..+++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            34555556666677888999999 888999999877654322   243 7899999999987        7889999999


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEE--------------
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQI--------------  210 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~--------------  210 (368)
                      |     ++|+|||+.++.++..+. |...|.+++|+|++. +++   .|+.|++||+++++.....              
T Consensus       165 D-----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~  239 (393)
T 4gq1_A          165 D-----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTL  239 (393)
T ss_dssp             T-----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEE
T ss_pred             C-----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEec
Confidence            8     999999998887766655 999999999999875 455   5999999999887643322              


Q ss_pred             -----------eccCCCeeEEEEe-cCCCeEEEEeecCCCCeEEEEecCcc-eeeeeeccCcceEEE-------------
Q 017642          211 -----------ETIANPKGLCAVS-QGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACF-------------  264 (368)
Q Consensus       211 -----------~~~~~~v~~~~~~-~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v-------------  264 (368)
                                 .+|...+.++.|. ++++.  ++ +++.|+.+++|+.... ....+..|...+..+             
T Consensus       240 ~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~--l~-s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          240 NTLPLVNTCHSSGIASSLANVRWIGSDGSG--IL-AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             ESGGGC------CCSSSCSEEEEETTTTCE--EE-EECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             ccccceeeeecccccccceeeeeecCCCCE--EE-EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence                       2455667788886 67774  33 3678999999986542 223333333333332             


Q ss_pred             -----EECC--CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          265 -----ALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       265 -----~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                           .|++  ++.++++|+.||. |+|||+.+++.+..+..  |...|.+++|+|||++||+++++| +.+|++.
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGL-IQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTE-EEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             cceeEEEccCCCCEEEEEECCCCE-EEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                 2333  3447788899999 99999999998888776  678999999999999999998776 7777764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=5.1e-28  Score=230.43  Aligned_cols=251  Identities=12%  Similarity=0.125  Sum_probs=206.8

Q ss_pred             cccccCCCCC-EEEEEEcC--CCCEEEEEe-CCeEEEEEecCC------CcceEEEcccCCceeEEEEEEeCCeEEEEec
Q 017642           78 ESTSSSPPPT-LLHISFNQ--DHGCFAAGT-DHGFRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGG  147 (368)
Q Consensus        78 ~~~~~~h~~~-v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  147 (368)
                      ......|... |++++|+|  ++++|++|+ |+.|+|||+.++      .......+. .+...+.++.|++++..++++
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEe
Confidence            3455689999 99999999  999999999 888999999755      334445554 678889999999998888777


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCC---CeeE
Q 017642          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIAN---PKGL  219 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~---~v~~  219 (368)
                      +.+.. ..+.|++||  .++.+..+. |...|.+++|+|++. .++   .|+.|++||+++++.+..+..|..   .+.+
T Consensus       135 ~~~~~-~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~  211 (615)
T 1pgu_A          135 GEGRD-NFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD  211 (615)
T ss_dssp             ECCSS-CSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE
T ss_pred             ccCCC-CccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE
Confidence            65300 014777777  667777877 999999999999986 454   589999999999999999999988   9999


Q ss_pred             EEEecC-CCeEEEEeecCCCCeEEEEecCc-ceeeee-e---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce
Q 017642          220 CAVSQG-VGSLVLVCPGLQKGQVRVEHYAS-KRTKFI-M---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL  293 (368)
Q Consensus       220 ~~~~~~-~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~-~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~  293 (368)
                      ++|+|+ ++.  +++ ++.||.|++|+... +.+..+ .   .|...|.+++|+ ++++|++++.||. |++||+.+++.
T Consensus       212 ~~~~~~~~~~--l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~-i~~wd~~~~~~  286 (615)
T 1pgu_A          212 VEFSPDSGEF--VIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT-IRVWDVTTSKC  286 (615)
T ss_dssp             EEECSTTCCE--EEE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE-EEEEETTTTEE
T ss_pred             EEECCCCCCE--EEE-EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc-EEEEECCCCcE
Confidence            999999 774  333 56799999998654 555666 5   899999999999 9999999999999 99999999999


Q ss_pred             eEeeEecc--CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          294 LQEVRRGA--DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       294 ~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +..+..+.  +...+.++.|. ++.++++++.||.|++||+.+++..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence            88887631  23578888886 8999999999999999999875543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=9.2e-28  Score=218.55  Aligned_cols=242  Identities=14%  Similarity=0.155  Sum_probs=200.1

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      -++.|+||++ ++||+|.|+.|+|||..+++......+. .|...|.+++|++++..+++++.|     +.|++||+.++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQ  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEec-CCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCC
Confidence            3567999975 5899999999999999988766554553 778889999999999999999988     99999999999


Q ss_pred             cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642          167 RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       167 ~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i  241 (368)
                      +.+..+. |...+.++.+++  .+++   .|+.+++||... ...+..+.+|...+..+.++++++.  +++ ++.|+.+
T Consensus       180 ~~~~~~~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~--l~s-~~~D~~v  254 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH--LAS-GGNDNLV  254 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE--EEE-EETTSCE
T ss_pred             cEEEEEeCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCe--eee-eeccccc
Confidence            9999988 899998887754  4555   589999999976 4556778899999999999999985  343 6689999


Q ss_pred             EEEecCcc-----eeeeeeccCcceEEEEECCCCC-EEEE--EeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          242 RVEHYASK-----RTKFIMAHDSRIACFALTQDGQ-LLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       242 ~i~~~~~~-----~~~~~~~~~~~i~~v~~sp~g~-~l~s--~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      ++|+....     .+.....|...|.+++|+|++. ++++  |+.|+. |+|||+.+++++..+..   ...+.++.|++
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~  330 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSP  330 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEET
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecC
Confidence            99876542     3455678999999999999765 5554  457999 99999999999988875   45799999999


Q ss_pred             CCCEEEEEe--CCCeEEEEEccCCCCCCCCCCC
Q 017642          314 NAQWLAVSS--DKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       314 ~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      +++.+++++  .|+.|+|||+.+++......++
T Consensus       331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          331 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence            999988765  7899999999998876655544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.3e-27  Score=216.51  Aligned_cols=237  Identities=21%  Similarity=0.293  Sum_probs=198.1

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|.+++|+  +.+|++|+ |+.|++||+.+++..  ..+. .|...+.++.++++.  +++++.|     +.
T Consensus       153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~--l~s~s~d-----g~  220 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--HTLY-GHTSTVRCMHLHEKR--VVSGSRD-----AT  220 (445)
T ss_dssp             EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEETTE--EEEEETT-----SE
T ss_pred             EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--EEEC-CCCCcEEEEEecCCE--EEEEeCC-----CE
Confidence            4456899999999997  56888888 888999999876554  4454 788889999998765  4555555     99


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      |++||+.+++.+..+. |...|.++++  ++.+++   .|+.|++||+++++.+..+..|...+.++.+  ++..  +++
T Consensus       221 i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l~~  294 (445)
T 2ovr_B          221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIH--VVS  294 (445)
T ss_dssp             EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSE--EEE
T ss_pred             EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCE--EEE
Confidence            9999999999999988 9999999999  455555   5999999999999999999999999998888  6654  343


Q ss_pred             ecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEE
Q 017642          234 PGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAF  311 (368)
Q Consensus       234 ~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~  311 (368)
                       |+.||.|++|+.. ++.+..+.+|...+.++.+  ++++|++|+.||. |++||+++++.+..+... .|...|.+++|
T Consensus       295 -~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          295 -GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             -EETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred             -EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEE
Confidence             6689999998865 4667778899999999887  5679999999999 999999999999888752 26678999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          312 SSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +  +++|++++.||.|++||+.+++...
T Consensus       371 ~--~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          371 N--KNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             C--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             C--CCEEEEEeCCCeEEEEECCCCceee
Confidence            5  6899999999999999999887654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=5.8e-27  Score=211.02  Aligned_cols=238  Identities=11%  Similarity=0.077  Sum_probs=193.1

Q ss_pred             CCCEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEE
Q 017642           85 PPTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vw  161 (368)
                      ...+.+++|+|+|++| ++++ ++.|++||+.+++..  ..+. .+ ..+.++.|++++..+ +++..+     +.|++|
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~-~~-~~v~~~~~spdg~~l~~~~~~~-----~~v~v~  101 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP-AG-SSPQGVAVSPDGKQVYVTNMAS-----STLSVI  101 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE-CS-SSEEEEEECTTSSEEEEEETTT-----TEEEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--EEEE-CC-CCccceEECCCCCEEEEEECCC-----CEEEEE
Confidence            3468999999999987 5554 888999999876655  3343 22 278899999887654 555555     899999


Q ss_pred             eCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       162 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      |+.+++.+..+.+...+.+++|+++++.++    .++.|++||+++++.+..+..+ ..+..++|+++++.++++  ++.
T Consensus       102 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~--~~~  178 (391)
T 1l0q_A          102 DTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVA--NFD  178 (391)
T ss_dssp             ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEE--ETT
T ss_pred             ECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEE--eCC
Confidence            999999999888778899999999998663    4899999999999998888755 456889999999875443  567


Q ss_pred             CCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe---CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       238 dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      ++.|++|+...........+...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..  + ..+.+++|+|+
T Consensus       179 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~d  254 (391)
T 1l0q_A          179 SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV--G-PDPAGIAVTPD  254 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC--C-SSEEEEEECTT
T ss_pred             CCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEec--C-CCccEEEEccC
Confidence            8999999887765555555667899999999999988888   6888 99999999998888876  3 35889999999


Q ss_pred             CCEE-EEEeCCCeEEEEEccCCCCC
Q 017642          315 AQWL-AVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       315 ~~~l-~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |++| ++++.|+.|++||+.+++..
T Consensus       255 g~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          255 GKKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEE
Confidence            9977 56688999999999886543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=4.9e-29  Score=223.92  Aligned_cols=206  Identities=14%  Similarity=0.254  Sum_probs=177.1

Q ss_pred             EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcE
Q 017642          121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKI  196 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i  196 (368)
                      ...+. +|...|.++.|++++..+++++.|     ++|++||+.+++....+. |...|.+++|+|++.+++   .|+.|
T Consensus        59 ~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           59 CRTLQ-GHSGKVYSLDWTPEKNWIVSASQD-----GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             EEEEC-CCSSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             eeccc-ccccEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            35565 899999999999999999999998     999999999999999998 999999999999999998   69999


Q ss_pred             EEEEcCCCe-------EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeee-----eccCcceEE
Q 017642          197 FVYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFI-----MAHDSRIAC  263 (368)
Q Consensus       197 ~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~-----~~~~~~i~~  263 (368)
                      ++||+.+..       ....+.+|.+.+.++.|.|++...+ + +|+.|+.|++|+.... .+..+     .+|...|.+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l-~-s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~  210 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL-I-TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS  210 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCE-E-EECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEE-E-EECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence            999996532       3455678999999999999876533 3 3778999999987653 34334     578999999


Q ss_pred             EEECC-CCCEEEEEeCCCcEEEEEECC-CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          264 FALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       264 v~~sp-~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ++|++ ++.+|++|+.|+. |++||++ .++.+..+.+  |.+.|.+++|+|++++|++++.||+|++||+++++.
T Consensus       211 ~~~~~~~~~~l~sgs~D~~-v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          211 LSINSLNANMFISGSCDTT-VRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             EEECSSSCCEEEEEETTSC-EEEEETTTTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred             EEeecCCCCEEEEEECCCe-EEEEECCCCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence            99987 8889999999999 9999998 4567777777  888999999999999999999999999999988754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=223.16  Aligned_cols=235  Identities=12%  Similarity=0.144  Sum_probs=184.2

Q ss_pred             CCEEEEEEcCCC--CEEEEEe-CCeEEEEEecCCCcce-------------------------------------EEEcc
Q 017642           86 PTLLHISFNQDH--GCFAAGT-DHGFRIYNCDPFREIF-------------------------------------RRDFE  125 (368)
Q Consensus        86 ~~v~~~~~s~~g--~~l~~~~-d~~i~iw~~~~~~~~~-------------------------------------~~~~~  125 (368)
                      ..|++++|+|++  .+|++++ |+.|++|++.......                                     ...+.
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            889999999998  7888888 8889999987533210                                     11222


Q ss_pred             cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-CcEEEEE-------e-cCCceeEEEEeeCc-cEEE---e
Q 017642          126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGEL-------S-FRSEVRSVKLRRDR-IIVV---L  192 (368)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-~~~~~~~-------~-~~~~v~~~~~~~~~-~~l~---~  192 (368)
                      ..|...+.++.|++++..++++ .|     +.|++||+.+ ++.+..+       . |...|.+++|+|++ .+++   .
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  247 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS  247 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence            3688889999999999988888 56     9999999984 4455433       3 88899999999998 7776   5


Q ss_pred             CCcEEEEEcCCCeE----EEEEeccCC------------CeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cceeeee
Q 017642          193 EQKIFVYNFADLKL----LHQIETIAN------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFI  254 (368)
Q Consensus       193 d~~i~vwd~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~~~~~  254 (368)
                      |+.|++||+++++.    +..+..+..            .+.+++|+|+++.  +++ ++. +.|++|+..  .+.+..+
T Consensus       248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~-~~~-~~v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY--MMT-RDY-LSVKVWDLNMENRPVETY  323 (447)
T ss_dssp             TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE--EEE-EES-SEEEEEETTCCSSCSCCE
T ss_pred             CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE--EEE-eeC-CeEEEEeCCCCcccccee
Confidence            99999999999886    678877775            8999999999985  443 555 999999876  4566677


Q ss_pred             eccCcc---------------eEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-------------------
Q 017642          255 MAHDSR---------------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-------------------  300 (368)
Q Consensus       255 ~~~~~~---------------i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-------------------  300 (368)
                      ..|...               +..++|+|++++|++|+.||. |+|||+.+++.+ .+..+                   
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~-v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  401 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF-FRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASG  401 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE-EEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSS
T ss_pred             eccccccccccccccccccccceEEEECCCCCEEEEeccCCE-EEEEEcCCCcce-eeeecccccccccccCCccccccC
Confidence            777542               334999999999999999999 999999988776 32221                   


Q ss_pred             ------------cCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          301 ------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       301 ------------~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                                  .....|..++|+|++.+|++++.++ +++|.-+
T Consensus       402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          402 KRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                        1235688999999999999998776 8888743

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.9e-29  Score=227.22  Aligned_cols=228  Identities=8%  Similarity=-0.006  Sum_probs=180.2

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCC-----------------------------cceEEEcccCCceeE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-----------------------------EIFRRDFERGGGIGV  132 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-----------------------------~~~~~~~~~~~~~~~  132 (368)
                      .-...|.+++|+|||+++|+++ |++|+  |....+                             ......+  .+...|
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~--~~~~~V   88 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS--QPVCYP   88 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT--SCSCCE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec--CCCCcE
Confidence            4457899999999999999988 77785  432222                             1111111  346779


Q ss_pred             EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCC-----ceeEEEEeeCccEEE---eCCcEEEEEcCCC
Q 017642          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRIIVV---LEQKIFVYNFADL  204 (368)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~---~d~~i~vwd~~~~  204 (368)
                      .+++|+|++..+++++.|     |.|++||...  ++..+.|..     .|.+++|+|||++++   .||+|++||+.++
T Consensus        89 ~~vawSPdG~~LAs~s~d-----g~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNN-----GNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             EEEEECSSSSCEEEEETT-----SCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             EEEEECCCCCEEEEEeCC-----CcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            999999999999999988     9999999544  555555443     599999999999999   5999999999887


Q ss_pred             e-------EEEEE----eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee----ee-eccCcceEEEEECC
Q 017642          205 K-------LLHQI----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FI-MAHDSRIACFALTQ  268 (368)
Q Consensus       205 ~-------~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~----~~-~~~~~~i~~v~~sp  268 (368)
                      +       .+.++    .+|...|.+++|+|+|   + ++ ++.|+.|++|+..++...    .+ .+|...|.+++|+ 
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---L-aa-ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---L-VA-ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---E-EE-EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCCc---E-EE-EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            5       35676    5567899999999998   3 33 456999999998876643    35 4788899999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE--ecCCCEEEEEeCCCeEEEEEcc
Q 017642          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF--SSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                       |++||+++ ++. |++||+.+++......+  |...|.+++|  +||+..|+++++||+ ++|.++
T Consensus       236 -g~~LASa~-~~t-IkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          236 -DYKVVLTC-PGY-VHKIDLKNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             -TTEEEEEC-SSE-EEEEETTTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             -CCEEEEEe-CCe-EEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             68899887 588 99999988777433324  7889999999  999999999999999 999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=4.3e-29  Score=218.60  Aligned_cols=200  Identities=14%  Similarity=0.178  Sum_probs=166.0

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc--EEEEEe-cCCceeEEEEee--CccEEE---eCCcEEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRR--DRIIVV---LEQKIFV  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~-~~~~v~~~~~~~--~~~~l~---~d~~i~v  198 (368)
                      +|...|.++.|++++..+++++.|     ++|++||+.+++  .+..+. |.+.|.+++|++  ++.+++   .|++|++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            788899999999999999999988     999999998875  456676 999999999986  366666   5999999


Q ss_pred             EEcCCC--eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce----eeeeeccCcceEEEEECCC---
Q 017642          199 YNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD---  269 (368)
Q Consensus       199 wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~----~~~~~~~~~~i~~v~~sp~---  269 (368)
                      ||++++  +....+.+|...|.+++|+|++...++++ |+.|+.|++|+.....    ...+.+|...|.+++|+|+   
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            999887  45667788999999999999843334554 7889999999876531    3456789999999999997   


Q ss_pred             --------------CCEEEEEeCCCcEEEEEECCCC---ceeEeeEeccCcccEEEEEEecCC----CEEEEEeCCCeEE
Q 017642          270 --------------GQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVH  328 (368)
Q Consensus       270 --------------g~~l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~dg~i~  328 (368)
                                    +++|++|+.|+. |+|||++..   +.+..+.+  |...|.+++|+|++    ++|++++.|++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             ccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                          468999999999 999999755   35666766  78899999999987    7999999999999


Q ss_pred             EEEccCC
Q 017642          329 VFNLKVN  335 (368)
Q Consensus       329 iwd~~~~  335 (368)
                      ||++++.
T Consensus       242 iw~~~~~  248 (316)
T 3bg1_A          242 IWTCDDA  248 (316)
T ss_dssp             EEECSST
T ss_pred             EEEccCc
Confidence            9999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=8.2e-27  Score=212.88  Aligned_cols=239  Identities=13%  Similarity=0.118  Sum_probs=196.0

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKV  158 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i  158 (368)
                      ...|...|.+++|+++++++++++ |+.|++||+++.+..  ..+. .+...+.++.|++++..+ +++..+     +.|
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i  236 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK--ATVD-LTGKWSKILLYDPIRDLVYCSNWIS-----EDI  236 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE--EEEE-CSSSSEEEEEEETTTTEEEEEETTT-----TEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE--EEEc-CCCCCeeEEEEcCCCCEEEEEecCC-----CcE
Confidence            347888999999999999999998 788999999876654  3343 567778899999877544 555555     999


Q ss_pred             EEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e---------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L---------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~---------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                      ++||+.+++.+..+.....+.+++|+|++..++  .         |+.|++||+++++.+..+. +...+..++|+++++
T Consensus       237 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~  315 (433)
T 3bws_A          237 SVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTEN  315 (433)
T ss_dssp             EEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTT
T ss_pred             EEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCC
Confidence            999999999988888777899999999997776  2         5799999999998877663 455788899999998


Q ss_pred             eEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---------------CCcEEEEEECCCCc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---------------KGTLVRIFNTLDGT  292 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---------------dg~~i~iwd~~~~~  292 (368)
                      .++++  ++.++.|++|+...........+...+.+++|+|+|++|++++.               ||. |++||+.+++
T Consensus       316 ~l~~~--~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~  392 (433)
T 3bws_A          316 KIYVS--DMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDT  392 (433)
T ss_dssp             EEEEE--ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTE
T ss_pred             EEEEE--ecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCc
Confidence            75443  56799999998876544444457788999999999998888876               468 9999999999


Q ss_pred             eeEeeEeccCcccEEEEEEecCCCEEEEEeC-CCeEEEEEccC
Q 017642          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV  334 (368)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~~  334 (368)
                      .+..+..   ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       393 ~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          393 VKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9888875   347899999999999988774 99999999863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-27  Score=216.99  Aligned_cols=240  Identities=9%  Similarity=0.041  Sum_probs=188.6

Q ss_pred             cCCCCCEEEEEEcCCCCEE-EEEe-CCeEEEEEec--CCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           82 SSPPPTLLHISFNQDHGCF-AAGT-DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      ..|.+.|++++|+|+|++| ++|+ |+.|+||++.  .++....... +.+...+.++.|++++..+++++.+     +.
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~-----g~  172 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAEDDTTVIIADKF-----GD  172 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCCCCEEEEEeCC-----Cc
Confidence            4678899999999999996 7887 8889999998  5544422221 2466789999999999888888877     99


Q ss_pred             EEEEeCCCCcEEE----EEe-cCCceeEEEEeeC---ccEEE---eCCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecC
Q 017642          158 VMIWDDHQSRCIG----ELS-FRSEVRSVKLRRD---RIIVV---LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQG  225 (368)
Q Consensus       158 i~vwd~~~~~~~~----~~~-~~~~v~~~~~~~~---~~~l~---~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~  225 (368)
                      |++|++.+++...    .+. |...|.+++|+|+   +.+++   .|+.|++||+++++.+.. +.+|...+.+++|+ +
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d  251 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-K  251 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-S
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-C
Confidence            9999998876543    555 8899999999999   88887   589999999999988877 55789999999999 8


Q ss_pred             CCeEEEEeecCCCCeEEEEecCc-ceeeeeec-------------------------cCcceEEEEECCCCCEEEEEe-C
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA-------------------------HDSRIACFALTQDGQLLATSS-T  278 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~-------------------------~~~~i~~v~~sp~g~~l~s~~-~  278 (368)
                      ++.  +++ |+.|+.|++|+... +.+..+..                         ....|.+++|+|++++|++++ .
T Consensus       252 ~~~--l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          252 DYL--LLS-AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             TTE--EEE-EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCE--EEE-EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence            874  343 66899999998765 44444432                         235689999999999999998 8


Q ss_pred             CCcEEEEEEC--CCC---ceeEeeEeccCcccEEEEEEecCCCEEEEEeC------CCeEEEEEccCC
Q 017642          279 KGTLVRIFNT--LDG---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVN  335 (368)
Q Consensus       279 dg~~i~iwd~--~~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~  335 (368)
                      ++. |+|||+  .++   +.+..+..  + +.|.+++|+|++.++++++.      ++.|.+|.+...
T Consensus       329 d~~-i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          329 TKC-IIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CSE-EEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             CCe-EEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            888 999999  555   56666665  4 78999999996544444343      456899988654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=2.5e-28  Score=223.34  Aligned_cols=202  Identities=15%  Similarity=0.118  Sum_probs=164.5

Q ss_pred             CCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE--e-cCCceeEEEEee-CccEEE---eCCcEEE
Q 017642          127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRR-DRIIVV---LEQKIFV  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~--~-~~~~v~~~~~~~-~~~~l~---~d~~i~v  198 (368)
                      .+...|.+++|+| +...+++|+.|     |.|+|||+.+++....+  . |.+.|.+++|+| ++.+++   .|++|++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            4666799999998 45577888887     99999999877644433  3 899999999998 577776   5999999


Q ss_pred             EEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCC-EEEE
Q 017642          199 YNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLAT  275 (368)
Q Consensus       199 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s  275 (368)
                      ||++++........  +...+.+++|++++..  +++ |+.||.|++|+.+++.+..+.+|...|++++|+|++. +|++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRM--VVT-GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTE--EEE-ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCE--EEE-EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEE
Confidence            99987654433332  2335678999999984  443 7789999999999988889999999999999999986 7889


Q ss_pred             EeCCCcEEEEEECCCCceeEeeE-eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          276 SSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       276 ~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |+.|+. |+|||+++.+....+. ...|...|.+++|+|+|++|++++.||.|+|||+.+++.
T Consensus       269 ~s~d~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          269 ASVDQT-VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             EETTSB-CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred             ecCcce-eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence            999999 9999998876544332 122788999999999999999999999999999988654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=5e-27  Score=210.96  Aligned_cols=205  Identities=12%  Similarity=0.171  Sum_probs=175.6

Q ss_pred             EEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEee-CccEEE---eC
Q 017642          122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRR-DRIIVV---LE  193 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~---~d  193 (368)
                      ..+. .|...+.++.|++++ ..+++++.|     +.|++||+.+++....+.   |...|.+++|+| ++.+++   .|
T Consensus        67 ~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           67 RTAS-PFDRRVTSLEWHPTHPTTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             EEEC-CCSSCEEEEEECSSCTTEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             Eecc-CCCCCEEEEEECCCCCCEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            3443 788899999999998 788888877     999999999888877765   899999999999 667776   58


Q ss_pred             CcEEEEEcCCCeEEEEEecc---CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCC
Q 017642          194 QKIFVYNFADLKLLHQIETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG  270 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g  270 (368)
                      +.|++||+++ +.+..+..+   ...+.+++|+++++.  +++ |+.|+.|++|+.+++.+..+..|...|.+++|+|++
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~  216 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQM--LAT-GDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRC  216 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTE--EEE-EETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSC
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCE--EEE-ECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCC
Confidence            9999999985 455555443   377999999999985  343 678999999999888899999999999999999999


Q ss_pred             C-EEEEEeCCCcEEEEEECCC----CceeEeeEeccCcccEEEEEEec-CCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          271 Q-LLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       271 ~-~l~s~~~dg~~i~iwd~~~----~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      + +|++++.|+. |++||+++    +..+..+ .  |...|.+++|+| ++++|++++.|+.|++||+++++....
T Consensus       217 ~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~-~--~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          217 DWLMATSSVDAT-VKLWDLRNIKDKNSYIAEM-P--HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             TTEEEEEETTSE-EEEEEGGGCCSTTCEEEEE-E--CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred             CCEEEEEeCCCE-EEEEeCCCCCcccceEEEe-c--CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence            9 9999999999 99999998    5666665 3  788999999999 999999999999999999998776443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-26  Score=206.85  Aligned_cols=204  Identities=11%  Similarity=0.179  Sum_probs=178.0

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~  197 (368)
                      ..+. +|...+.+++|++++..+++++.|     +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|+
T Consensus        26 ~~l~-~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           26 IKLT-GHERPLTQVKYNKEGDLLFSCSKD-----SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEE-CCSSCEEEEEECTTSCEEEEEESS-----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             EEEE-EeeceEEEEEEcCCCCEEEEEeCC-----CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            4454 889999999999999999998887     999999999999999998 999999999999998887   589999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC-----CeEEEEecCcc------------eeeeeeccCc-
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-----GQVRVEHYASK------------RTKFIMAHDS-  259 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d-----g~i~i~~~~~~------------~~~~~~~~~~-  259 (368)
                      +||+++++.+..+. +...+.+++|+++++.++.   ++.+     +.|++|+....            ....+..|.. 
T Consensus       100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA---ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE---EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE---ecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999988887 7889999999999986443   3355     99999876542            3344555666 


Q ss_pred             -ceEEEEECCCCCEEEEEeCCCcEEEEEECCC-CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          260 -RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       260 -~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                       .+.+++|+|++++|++++.||. |++||+.+ ++.+..+..  |...|.+++|+|++++|++++.||.|++||+++++.
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  252 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV  252 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSE-EEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cceeEEEEcCCCCEEEEEcCCCE-EEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence             8999999999999999999999 99999998 777878877  778999999999999999999999999999988765


Q ss_pred             C
Q 017642          338 S  338 (368)
Q Consensus       338 ~  338 (368)
                      .
T Consensus       253 ~  253 (369)
T 3zwl_B          253 L  253 (369)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=3.9e-27  Score=210.28  Aligned_cols=194  Identities=11%  Similarity=0.078  Sum_probs=157.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .+...+.+++|+|||++|++++   |+.|+|||+.+.+..  ..+  .+...|.+++|++++..+++++.      +.++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~--~~~--~~~~~V~~v~fspdg~~l~s~s~------~~~~  200 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK--FEI--ETRGEVKDLHFSTDGKVVAYITG------SSLE  200 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE--EEE--ECSSCCCEEEECTTSSEEEEECS------SCEE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE--EEe--CCCCceEEEEEccCCceEEeccc------eeEE
Confidence            4556789999999999987554   677999999876665  344  34556889999999999998886      5788


Q ss_pred             EEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCC----cEEEEEcCCCeE----EEEEeccCCCeeEEEEecC
Q 017642          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQ----KIFVYNFADLKL----LHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       160 vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~----~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~  225 (368)
                      +|+..+++.+....   |...|.+++|+|++.+++   .|+    .+++||+.....    ...+..|...|.+++|+|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd  280 (365)
T 4h5i_A          201 VISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK  280 (365)
T ss_dssp             EEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred             EEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence            88878887665432   778899999999999887   344    688899876543    3456778889999999999


Q ss_pred             CCeEEEEeecCCCCeEEEEecCc-ceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       226 ~~~~~l~~~g~~dg~i~i~~~~~-~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      |+.  ||+ |+.|+.|+||+... +.+.. +.+|...|++|+|+|||++||+|+.|++ |+|||+..
T Consensus       281 g~~--las-gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-vrvw~ip~  343 (365)
T 4h5i_A          281 GEL--AVL-ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT-IHIIKLPL  343 (365)
T ss_dssp             SCE--EEE-EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-EEEEECCT
T ss_pred             CCc--eEE-EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-EEEEEcCC
Confidence            984  454 77899999998765 55665 4789999999999999999999999999 99999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=1e-26  Score=205.00  Aligned_cols=219  Identities=10%  Similarity=0.139  Sum_probs=180.7

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCc-----EEEEEe-cCCceeE
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-FRSEVRS  180 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~-~~~~v~~  180 (368)
                      +.++...+.+..+..+|. +|...|.+++|+|+ +.++++++.|     ++|+|||+.+++     +...+. |...|.+
T Consensus        18 ~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D-----~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~   91 (340)
T 4aow_A           18 LYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRD-----KTIIMWKLTRDETNYGIPQRALRGHSHFVSD   91 (340)
T ss_dssp             --------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETT-----SCEEEEEECCSSSCSEEEEEEECCCSSCEEE
T ss_pred             EEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCC-----CeEEEEECCCCCcccceeeEEEeCCCCCEEE
Confidence            555555555556666786 89999999999987 5788888888     999999987653     455666 8999999


Q ss_pred             EEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee--eeee
Q 017642          181 VKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIM  255 (368)
Q Consensus       181 ~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~--~~~~  255 (368)
                      ++|+|++.+++   .|+.|++|+............+...+..+.++++++.  +++ |+.|+.+++|+......  ....
T Consensus        92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s-~s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ--IVS-GSRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC--EEE-EETTSCEEEECTTSCEEEEECSS
T ss_pred             EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcc--cee-ecCCCeEEEEEeCCCceEEEEec
Confidence            99999999888   5999999999999888888888888888999998885  333 67899999998766443  3456


Q ss_pred             ccCcceEEEEECCCC--CEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          256 AHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g--~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +|...+..++|++++  .++++++.|+. |++||+++++.+..+..  |.+.|.+++|+|++++|++++.||.|++||++
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence            789999999999875  47899999999 99999999999988887  78899999999999999999999999999998


Q ss_pred             CCCCC
Q 017642          334 VNSGS  338 (368)
Q Consensus       334 ~~~~~  338 (368)
                      +.+..
T Consensus       246 ~~~~~  250 (340)
T 4aow_A          246 EGKHL  250 (340)
T ss_dssp             TTEEE
T ss_pred             cCcee
Confidence            87654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-27  Score=211.65  Aligned_cols=199  Identities=13%  Similarity=0.167  Sum_probs=171.0

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFV  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~v  198 (368)
                      +|...|.+++|++++..+++++.|     +.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .|+.|++
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             CCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            788999999999999999998887     999999998  556677777 9999999999976  77777   5899999


Q ss_pred             EEcCCCe--EEEEEeccCCCeeEEEEecC--CCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECC---
Q 017642          199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ---  268 (368)
Q Consensus       199 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp---  268 (368)
                      ||+++++  .+..+..|...+.+++|+++  +..  +++ ++.|+.|++|+....   ....+..|...|.+++|+|   
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEE-EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--EEE-ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999887  67777889999999999999  664  343 568999999987764   3445678999999999999   


Q ss_pred             ----------CCCEEEEEeCCCcEEEEEECCCCc----eeEeeEeccCcccEEEEEEecC---CCEEEEEeCCCeEEEEE
Q 017642          269 ----------DGQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       269 ----------~g~~l~s~~~dg~~i~iwd~~~~~----~~~~~~~~~~~~~v~~l~~sp~---~~~l~s~s~dg~i~iwd  331 (368)
                                ++.+|++++.||. |++||+++++    .+..+..  |...|.+++|+|+   +++|++++.||.|++||
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ---------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                      6999999999999 9999998765    3344554  7889999999999   89999999999999999


Q ss_pred             ccCCC
Q 017642          332 LKVNS  336 (368)
Q Consensus       332 ~~~~~  336 (368)
                      +.+++
T Consensus       238 ~~~~~  242 (379)
T 3jrp_A          238 QDNEQ  242 (379)
T ss_dssp             ESSTT
T ss_pred             CCCCC
Confidence            98864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=3.9e-26  Score=208.44  Aligned_cols=244  Identities=10%  Similarity=0.043  Sum_probs=196.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEE---EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ...+.+++|+|++.++++++ ++.|++||+.+++.....   .+. .|...+.++.+++++..+++++.|     +.|++
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~  195 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQA-----NAVHV  195 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGG-----TEEEE
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCC-----CEEEE
Confidence            34567899999777777777 666999999876654221   222 667788999999999888988887     99999


Q ss_pred             EeCCCCcEEEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ||+.+++.+..+. +...+.+++|+|++..++    .|+.|++||+++++.+..+..+ ..+..++|+|+++.++++..+
T Consensus       196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEE
T ss_pred             EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECC
Confidence            9999999998887 888999999999998774    3789999999999988887654 458889999999875544322


Q ss_pred             C-----CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCE-EEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEE
Q 017642          236 L-----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQL-LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       236 ~-----~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~-l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (368)
                      .     .|+.|++|+...........|...+.+++|+|++++ +++++.++. |++||+.+++.+..+.   +...+.++
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~~  350 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNTI  350 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCeE
Confidence            1     488999999876655555566778999999999974 566688998 9999999998887776   45679999


Q ss_pred             EEecCCCEEEEEeC---------------CCeEEEEEccCCCCCC
Q 017642          310 AFSSNAQWLAVSSD---------------KGTVHVFNLKVNSGSA  339 (368)
Q Consensus       310 ~~sp~~~~l~s~s~---------------dg~i~iwd~~~~~~~~  339 (368)
                      +|+|+|++|++++.               ||.|++||+.+++...
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~  395 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE  395 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence            99999999888876               5799999998876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.2e-26  Score=211.81  Aligned_cols=200  Identities=15%  Similarity=0.169  Sum_probs=167.4

Q ss_pred             CCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCC----------CcEEEEEe-cCCceeEEEEeeCcc-EEE--
Q 017642          127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----------SRCIGELS-FRSEVRSVKLRRDRI-IVV--  191 (368)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~l~--  191 (368)
                      .|...+.++.|+++ ..++++++.+     |.|++||+.+          .+.+..+. |...|.+++|+|++. +++  
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            57778889999997 6788888877     9999999876          56667777 999999999999987 666  


Q ss_pred             -eCCcEEEEEcCCCeE-------EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc----eeeeeeccCc
Q 017642          192 -LEQKIFVYNFADLKL-------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDS  259 (368)
Q Consensus       192 -~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~----~~~~~~~~~~  259 (368)
                       .||.|++||+..+..       ...+..|...+.+++|+|++..++ ++ ++.||.|++|+....    .+..+..|..
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l-~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS-VADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE-EE-EETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE-EE-EeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence             589999999987322       456668889999999999665533 33 568999999987753    5566778999


Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEEECCC-CceeEeeEeccCcccEEEEEEecCCC-EEEEEeCCCeEEEEEccCCC
Q 017642          260 RIACFALTQDGQ-LLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       260 ~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .|++++|+|++. +|++|+.||. |+|||+++ .+.+..+..  |...|.+++|+|+++ +|++++.||.|+|||+....
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~  355 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  355 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            999999999997 7999999999 99999998 566777877  788999999999995 78999999999999998844

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.7e-27  Score=233.04  Aligned_cols=248  Identities=13%  Similarity=0.111  Sum_probs=192.4

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc----eEEEc----ccCCceeEEEEEEeCCeEEEEecCCCC
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI----FRRDF----ERGGGIGVVEMLFRCNILALVGGGPDP  151 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~d~  151 (368)
                      ..+|...+.+++|+|+|++|++|+ |+.|++||+..+...    +...+    ..+|...|.+++|++++..+++++.| 
T Consensus       431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D-  509 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET-  509 (902)
T ss_dssp             CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT-
T ss_pred             ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC-
Confidence            345666677778889999999999 889999999876421    11111    01577889999999999999999998 


Q ss_pred             CCCCCcEEEEeCCCCc---------------------------------------------EEEEEe-cCCceeEEEEee
Q 017642          152 QYPLNKVMIWDDHQSR---------------------------------------------CIGELS-FRSEVRSVKLRR  185 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~---------------------------------------------~~~~~~-~~~~v~~~~~~~  185 (368)
                          |+|+|||+.+++                                             ++..+. |.+.|++++|+|
T Consensus       510 ----gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp  585 (902)
T 2oaj_A          510 ----GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN  585 (902)
T ss_dssp             ----SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB
T ss_pred             ----cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC
Confidence                999999987662                                             356666 999999999999


Q ss_pred             CccEEE---eCCcEEEEEcCCCeEEEE-----Ee-ccCCCeeEEEEe-----cCCC-eEEEEeecCCCCeEEEEec----
Q 017642          186 DRIIVV---LEQKIFVYNFADLKLLHQ-----IE-TIANPKGLCAVS-----QGVG-SLVLVCPGLQKGQVRVEHY----  246 (368)
Q Consensus       186 ~~~~l~---~d~~i~vwd~~~~~~~~~-----~~-~~~~~v~~~~~~-----~~~~-~~~l~~~g~~dg~i~i~~~----  246 (368)
                      || +++   .|++|+|||++++..+..     +. +|...|++++|+     +||. ...|++ |+.|++|++|+.    
T Consensus       586 dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s-gs~D~tv~~wd~~p~~  663 (902)
T 2oaj_A          586 IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC-GTDMGEVITYKILPAS  663 (902)
T ss_dssp             TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE-EETTSEEEEEEEEECG
T ss_pred             Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE-EecCCcEEEEEEecCC
Confidence            99 777   589999999988876542     22 678889999999     8862 234554 789999999986    


Q ss_pred             Ccceeeeeecc-----CcceEEEE-EC----------------------CCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          247 ASKRTKFIMAH-----DSRIACFA-LT----------------------QDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       247 ~~~~~~~~~~~-----~~~i~~v~-~s----------------------p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      +++....+.+|     .++|..++ |+                      +++.+|+++  +.. ||||++.++++.+...
T Consensus       664 ~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~-ir~~~~~~~k~~~k~~  740 (902)
T 2oaj_A          664 GGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDD-IRLITLGKSKSTHKGF  740 (902)
T ss_dssp             GGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSE-EEEECTTCCCEEEEEC
T ss_pred             CCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccc-eEEEeCccccceeeEc
Confidence            55666666666     46777776 65                      455555544  556 9999999999987775


Q ss_pred             eccCcccEEEE---E------EecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          299 RGADRAEIYSL---A------FSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       299 ~~~~~~~v~~l---~------~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      .  |...+.++   .      |++++..|++++.||+|++|++.+.+....
T Consensus       741 ~--~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~  789 (902)
T 2oaj_A          741 K--YPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMS  789 (902)
T ss_dssp             S--SCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             c--cceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhh
Confidence            4  45566666   5      788999999999999999999999887544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.3e-25  Score=199.80  Aligned_cols=232  Identities=11%  Similarity=0.119  Sum_probs=176.5

Q ss_pred             CEEEEEEcCCCCEEEE-Ee-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           87 TLLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~-~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      .+..+++.++++.++. ++ |+.|+|||+.+++...  .+.  +...+.++.++++..+++.   +     +.|++||+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~--~~~--~~~~v~~v~~~~~~~~~~~---~-----~~i~i~d~~  127 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS--RIK--VDAPVKDLFLSREFIVVSY---G-----DVISVFKFG  127 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE--EEE--CSSCEEEEEECSSEEEEEE---T-----TEEEEEESS
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE--EEE--CCCceEEEEEcCCEEEEEE---c-----CEEEEEECC
Confidence            5778889998888754 44 7789999988776653  342  4457889999998877664   2     789999999


Q ss_pred             CC-cEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe----------------EEEEEeccCCCeeEEEEe
Q 017642          165 QS-RCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK----------------LLHQIETIANPKGLCAVS  223 (368)
Q Consensus       165 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~  223 (368)
                      ++ +.+..+..  ....+++++ ..+++    .||.|++||+++++                ++..+.+|...|.+++|+
T Consensus       128 ~~~~~~~~~~~--~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s  204 (355)
T 3vu4_A          128 NPWKRITDDIR--FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN  204 (355)
T ss_dssp             TTCCBSSCCEE--EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred             CCceeeEEecc--CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence            88 66555554  444556666 33322    47899999998765                267888999999999999


Q ss_pred             cCCCeEEEEeecCCCCe-EEEEecC-cceeeeee-c-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE--e-
Q 017642          224 QGVGSLVLVCPGLQKGQ-VRVEHYA-SKRTKFIM-A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--E-  296 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~-i~i~~~~-~~~~~~~~-~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~--~-  296 (368)
                      |+++.  +++ |+.|++ |++|+.. ++.+..+. + |...|.+++|+|+|++|++++.|+. |+|||++.+....  . 
T Consensus       205 ~~g~~--l~s-~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~  280 (355)
T 3vu4_A          205 RKSDM--VAT-CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHAL  280 (355)
T ss_dssp             TTSSE--EEE-EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEET
T ss_pred             CCCCE--EEE-EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccc
Confidence            99984  443 778998 9999876 46667777 5 9999999999999999999999999 9999997653211  1 


Q ss_pred             -------------------eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          297 -------------------VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       297 -------------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                                         +... +......++|++|+++|++++.||.+++|++..++..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          281 KGWINMKYFQSEWSLCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             TTTEECCCCCCSSCSEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             cceeeccccccccceeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence                               1100 1123467899999999999999999999999876653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=4.3e-26  Score=205.95  Aligned_cols=224  Identities=14%  Similarity=0.196  Sum_probs=180.6

Q ss_pred             CeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-----------
Q 017642          106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-----------  173 (368)
Q Consensus       106 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-----------  173 (368)
                      ..+++|+++..+..  ..+. .|...+.++.|++ ++..+++++.|     |.|++||+.+++....+.           
T Consensus        23 ~~~~v~~~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           23 STRRVLGLELNKDR--DVER-IHGGGINTLDIEPVEGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHHTEEECTTE--EECC-CCSSCEEEEEECTTTCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             CcceeeccccCcce--eeee-ccCCcEEEEEEecCCCCEEEEEcCC-----CeEEEEECCCCcccceEeccccccccccc
Confidence            34677877665544  3443 7899999999999 99999998887     999999999876554443           


Q ss_pred             ---cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe-EEEEeecCCCCeEEEEe
Q 017642          174 ---FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS-LVLVCPGLQKGQVRVEH  245 (368)
Q Consensus       174 ---~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~g~~dg~i~i~~  245 (368)
                         |...|.+++|+| ++.+++   .|+.|++||+++++.+..+. +...+..+.+.+.+.. .++++ |+.|+.|++|+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d  172 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAV-GTRGPKVQLCD  172 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEE-EESSSSEEEEE
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEE-EcCCCeEEEEe
Confidence               888999999999 666666   48999999999999888876 6778889999886542 13333 67899999988


Q ss_pred             cCc-ceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCCCc-eeEeeEe-------------ccCcccEEEE
Q 017642          246 YAS-KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGT-LLQEVRR-------------GADRAEIYSL  309 (368)
Q Consensus       246 ~~~-~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~~~-~~~~~~~-------------~~~~~~v~~l  309 (368)
                      ... ..+..+..|...|.+++|+|+++ +|++++.||. |++||++++. .+..+..             ..|...|.++
T Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            664 56677888999999999999998 6999999999 9999998765 3333311             1267899999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +|+|++++|++++.||.|++||+.+++....
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLV  282 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence            9999999999999999999999998876543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=5.6e-25  Score=197.98  Aligned_cols=223  Identities=14%  Similarity=0.124  Sum_probs=178.5

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcEEEEEecCC
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS  176 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  176 (368)
                      ++++++ |+.|++||+++++..  ..+. .+ ..+.++.|++++..+ ++++.|     +.|++||+.+++.+..+.+..
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~--~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVT--ATIP-VG-SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEE--EEEE-CS-SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEcCCCCEEEEEECCCCeEE--EEee-cC-CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC
Confidence            566666 888999999876554  3443 22 347899999988654 666566     999999999999999998777


Q ss_pred             ceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-ee
Q 017642          177 EVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RT  251 (368)
Q Consensus       177 ~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~  251 (368)
                      .+.+++|+|++..++    .++.|++||+++++.+..+..+ ..+..++|+++++.++++  ++.++.|++|+.... .+
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE--eCCCCEEEEEECCCCcEE
Confidence            999999999998775    3689999999999988887654 467889999999875443  567999999987654 44


Q ss_pred             eeeeccCcceEEEEECCCCCEE-EEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe---CCCeE
Q 017642          252 KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTV  327 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l-~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~dg~i  327 (368)
                      ..+..+ ..+.+++|+|++++| ++++.++. |++||+++++.+..+.   +...+.+++|+|++++|++++   .++.|
T Consensus       152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             EEEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence            444444 557999999999977 57778888 9999999998887776   345789999999999998887   68999


Q ss_pred             EEEEccCCCCC
Q 017642          328 HVFNLKVNSGS  338 (368)
Q Consensus       328 ~iwd~~~~~~~  338 (368)
                      ++||+.+++..
T Consensus       227 ~~~d~~~~~~~  237 (391)
T 1l0q_A          227 SMIDTGTNKIT  237 (391)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCeEE
Confidence            99999877543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-25  Score=205.12  Aligned_cols=218  Identities=9%  Similarity=0.045  Sum_probs=171.9

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCC----ceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .|.+.|.+++|||+|++||+++ |+.|+||+.+.    ....+. .+    ...+.+++|+|++..+++++.|     |+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-----Gt  152 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-----GE  152 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT-----SE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC-----CE
Confidence            5678999999999999999999 88899999543    333343 12    2258899999999999999998     99


Q ss_pred             EEEEeCCCCc-------EEEEEe-----cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeE---EEEE-eccCCCeeE
Q 017642          158 VMIWDDHQSR-------CIGELS-----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL---LHQI-ETIANPKGL  219 (368)
Q Consensus       158 i~vwd~~~~~-------~~~~~~-----~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~---~~~~-~~~~~~v~~  219 (368)
                      |++||+.+++       .+.++.     |...|.+++|+||| +++  .|+.|++||+.+++.   .+++ ..|...|..
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            9999999885       356663     56799999999999 555  699999999987763   3556 367789999


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee-ccCcceEEEEE--CCCCCEEEEEeCCCcEEEEEECCC------
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTLD------  290 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~--sp~g~~l~s~~~dg~~i~iwd~~~------  290 (368)
                      ++|+  ++  .+++ ++ ++.|++|+..+.....+. +|...|..++|  +|++..|+++++||.  ++|....      
T Consensus       232 vaFs--g~--~LAS-a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~~~spd  303 (588)
T 2j04_A          232 LKIV--DY--KVVL-TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDELHVTAD  303 (588)
T ss_dssp             EEEE--TT--EEEE-EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSEEEECC
T ss_pred             EEEE--CC--EEEE-Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccEEECCC
Confidence            9999  44  3454 33 699999998887775544 89999999999  999999999999985  8888641      


Q ss_pred             -----------------CceeEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          291 -----------------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       291 -----------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                                       +..+..+.   +...|.+++|+|||+.+|+++
T Consensus       304 ~~l~a~~d~~v~lW~~~g~~l~~~~---~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          304 NIIAPYLEKKFKKWSTIWNEFNNYE---TTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             CSSHHHHHHHHHHTTTTTTSSSSSC---CEEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCEEEEEECCCCceeeec---cceEEEEEEECCCCCEEEEEE
Confidence                             11111111   234699999999999999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.5e-26  Score=220.43  Aligned_cols=199  Identities=13%  Similarity=0.166  Sum_probs=171.3

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEEEe-cCCceeEEEEeeC--ccEEE---eCCcEEE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFV  198 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~l~---~d~~i~v  198 (368)
                      +|...|.++.|++++..+++++.|     |.|++||+.  +++.+..+. |.+.|.+++|+++  +.+++   .||.|++
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            888999999999999999998887     999999987  456677777 9999999999987  87777   5999999


Q ss_pred             EEcCCCe--EEEEEeccCCCeeEEEEecC--CCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECC---
Q 017642          199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ---  268 (368)
Q Consensus       199 wd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp---  268 (368)
                      ||+++++  .+..+..|...|.+++|+|+  ++.  +++ |+.||.|++|+....   ....+..|...|.+++|+|   
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~--l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCE--EEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            9999887  67777889999999999999  664  443 668999999987664   3445678999999999999   


Q ss_pred             ----------CCCEEEEEeCCCcEEEEEECCCC----ceeEeeEeccCcccEEEEEEecC---CCEEEEEeCCCeEEEEE
Q 017642          269 ----------DGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       269 ----------~g~~l~s~~~dg~~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~---~~~l~s~s~dg~i~iwd  331 (368)
                                ++.+|++|+.||. |++||++++    .....+..  |...|.+++|+|+   +++|++++.||.|++||
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                      5899999999999 999999887    44455555  7889999999999   89999999999999999


Q ss_pred             ccCCC
Q 017642          332 LKVNS  336 (368)
Q Consensus       332 ~~~~~  336 (368)
                      +.+++
T Consensus       236 ~~~~~  240 (753)
T 3jro_A          236 QDNEQ  240 (753)
T ss_dssp             ESSSS
T ss_pred             CCCCC
Confidence            99875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=7.5e-25  Score=191.23  Aligned_cols=202  Identities=16%  Similarity=0.258  Sum_probs=161.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEE-------------------------------------
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRD-------------------------------------  123 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~-------------------------------------  123 (368)
                      ..|...|++++|+|+|++|++|+ |+.|++|++++++......                                     
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~  143 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV  143 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeE
Confidence            46888999999999999999999 8889999988765432111                                     


Q ss_pred             --cccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE----EEE-ecCCceeEEEEeeCccEEE-----
Q 017642          124 --FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI----GEL-SFRSEVRSVKLRRDRIIVV-----  191 (368)
Q Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~-----  191 (368)
                        + ..|...+..+.+.+++..+++++.|     +.|++||+.+++..    ... .+.+.|.++.+.+++..++     
T Consensus       144 ~~~-~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  217 (318)
T 4ggc_A          144 ATL-SGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG  217 (318)
T ss_dssp             EEE-ECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred             EEE-cCccCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence              1 2345556677777778888888887     99999999876532    222 3788999999999765433     


Q ss_pred             -eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCC
Q 017642          192 -LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQD  269 (368)
Q Consensus       192 -~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~  269 (368)
                       .++.|++||.+........ .+...+..+.++++++.+++++ |+.|+.|++|+.. ++.+..+.+|.+.|++|+|+|+
T Consensus       218 ~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd  295 (318)
T 4ggc_A          218 TSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD  295 (318)
T ss_dssp             TTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             CCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence             4789999999888776655 4667888999999999866554 7789999998865 5777889999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEECCCCc
Q 017642          270 GQLLATSSTKGTLVRIFNTLDGT  292 (368)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~~~  292 (368)
                      |++|++|+.||. |+|||+.+..
T Consensus       296 g~~l~S~s~D~~-v~iWd~~~~d  317 (318)
T 4ggc_A          296 GATVASAAADET-LRLWRCFELD  317 (318)
T ss_dssp             SSCEEEEETTTE-EEEECCSCCC
T ss_pred             CCEEEEEecCCe-EEEEECCCCC
Confidence            999999999999 9999987653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=6.3e-25  Score=193.62  Aligned_cols=200  Identities=12%  Similarity=0.151  Sum_probs=167.2

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe-cCCceeEEEEee--CccEEE---eCCcE
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRR--DRIIVV---LEQKI  196 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~l~---~d~~i  196 (368)
                      +|...|.++.|++++..+++++.|     |.|++||+.++    +....+. |...|.+++|++  ++.+++   .|+.|
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            788999999999999999999888     99999999876    4566666 999999999999  577777   58999


Q ss_pred             EEEEcCCC---------eEEEEEeccCCCeeEEEEecC--CCeEEEEeecCCCCeEEEEecCc-ceeeee----------
Q 017642          197 FVYNFADL---------KLLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYAS-KRTKFI----------  254 (368)
Q Consensus       197 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~----------  254 (368)
                      ++||++++         +.+..+..|...+.+++|+++  ++.  +++ ++.||.|++|+... +.+..+          
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK--LAC-LGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSE--EEE-EETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcE--EEE-ecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999887         667888889999999999999  764  443 66899999998654 222222          


Q ss_pred             ---eccCcceEEEEECCC---CCEEEEEeCCCcEEEEEECCCCce--eEeeEeccCcccEEEEEEecCC----CEEEEEe
Q 017642          255 ---MAHDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA----QWLAVSS  322 (368)
Q Consensus       255 ---~~~~~~i~~v~~sp~---g~~l~s~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s  322 (368)
                         ..|...+.+++|+|+   +.+|++++.++. +.+|+...++.  +..+..  |...|.+++|+|++    ++|++++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPG--HKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCC--CCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCC--CCcceeEEEECCCCCCcceEEEEEc
Confidence               257788999999997   889999999999 98888877765  445554  78899999999998    8999999


Q ss_pred             CCCeEEEEEccCCCC
Q 017642          323 DKGTVHVFNLKVNSG  337 (368)
Q Consensus       323 ~dg~i~iwd~~~~~~  337 (368)
                      .||.|++||++++..
T Consensus       238 ~dg~i~iwd~~~~~~  252 (351)
T 3f3f_A          238 KDGRIRIFKITEKLS  252 (351)
T ss_dssp             TTSCEEEEEEEECC-
T ss_pred             CCCeEEEEeCCCCcC
Confidence            999999999998644

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.3e-25  Score=196.16  Aligned_cols=229  Identities=11%  Similarity=0.021  Sum_probs=171.2

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCC-------CcceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCC
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL  155 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~  155 (368)
                      ..|.++.|+|+   +++++ |+.|++|+.+..       .......+...+...+.++.+++  ++..+++++.|     
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d-----  148 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR-----  148 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT-----
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC-----
Confidence            45666777777   77777 888999976521       11111222225667899999999  88999988888     


Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE-EEEec-cCCCeeEEEEecCCCe
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-HQIET-IANPKGLCAVSQGVGS  228 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~  228 (368)
                      +.|++||+++++.+..+.  +...|.+++|+|++.+++   .|+.|++||+++++.+ ..+.. |...|.+++|+|++..
T Consensus       149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence            999999999999877664  566899999999999988   5899999999999877 77887 8999999999999985


Q ss_pred             EEEEeecCCCCeEEEEecCcc-eeeeee---ccCcceE--EEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEecc
Q 017642          229 LVLVCPGLQKGQVRVEHYASK-RTKFIM---AHDSRIA--CFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~-~~~~~~---~~~~~i~--~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                        +++ ++ ++.|++|+.... .+..+.   .|...+.  +++|+|+|++|++++. |+. |+||++.+.......    
T Consensus       229 --l~s-~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~-i~v~~~~~~~~~~~~----  299 (343)
T 3lrv_A          229 --MVV-EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS-LTIYKFDKKTKNWTK----  299 (343)
T ss_dssp             --EEE-EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCSEEE----
T ss_pred             --EEE-Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCc-EEEEEEcccccceEe----
Confidence              443 44 559999987653 223333   2444444  6999999999999998 888 999999766543332    


Q ss_pred             CcccEEEEEEec---CCCEEEEEeCCCeEEEEEcc
Q 017642          302 DRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       302 ~~~~v~~l~~sp---~~~~l~s~s~dg~i~iwd~~  333 (368)
                        .++..++|.+   +++.|++++.||.++++-..
T Consensus       300 --~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          300 --DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             --EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             --cCceeEecCccccccceeEEEecCCceEEEEec
Confidence              3577888888   88899999999998887543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=2e-24  Score=192.25  Aligned_cols=208  Identities=15%  Similarity=0.145  Sum_probs=161.7

Q ss_pred             EEcccCCceeEEEEEEeCC---eEEEEecCCCCCCCCCcEEEEeCCC-CcEE-EEEe-cCCceeEEEEeeCccEEE---e
Q 017642          122 RDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQ-SRCI-GELS-FRSEVRSVKLRRDRIIVV---L  192 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~---~~~~~s~~~d~~~~~~~i~vwd~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~l~---~  192 (368)
                      ..+. .|...|.+++|+++   +..+++++.|     |.|++||+.+ ++.+ ..+. |...|.+++|+|++.+++   .
T Consensus        33 ~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           33 EVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             ECSS-CCSSCEEEEEECCTTSSSEEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             Eecc-CCCCceEEEEEcCCCCCceEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            3443 88999999999998   5888888887     9999999987 5554 5555 999999999999998887   5


Q ss_pred             CCcEEEEEcCCCeEEEEEeccCCCeeEEEE--ecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeecc------------
Q 017642          193 EQKIFVYNFADLKLLHQIETIANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH------------  257 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~------------  257 (368)
                      |+.|++||+++++.+. +..|...+.+++|  ++++.  ++++ ++.||.|++|+... +.+..+..+            
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~--~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  182 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS--CVMT-GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM  182 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE--EEEE-EETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC--EEEE-ccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCe
Confidence            8999999999998776 4568999999999  66654  3444 66899999998654 322222222            


Q ss_pred             -----------------------------CcceEEEEECCCCCE----EEEEeCCCcEEEEEECCCC---ceeEeeEecc
Q 017642          258 -----------------------------DSRIACFALTQDGQL----LATSSTKGTLVRIFNTLDG---TLLQEVRRGA  301 (368)
Q Consensus       258 -----------------------------~~~i~~v~~sp~g~~----l~s~~~dg~~i~iwd~~~~---~~~~~~~~~~  301 (368)
                                                   ...+.++.+.++...    +++++.||. |++||+...   +.+..+..  
T Consensus       183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~--  259 (368)
T 3mmy_A          183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFKC--  259 (368)
T ss_dssp             EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEEC--
T ss_pred             eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceeeee--
Confidence                                         123445555444433    999999999 999999887   55666665  


Q ss_pred             Ccc------------cEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          302 DRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       302 ~~~------------~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      |..            .|.+++|+|++++|++++.||.|++||+.+++......
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence            443            69999999999999999999999999999876654443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.3e-24  Score=196.00  Aligned_cols=242  Identities=12%  Similarity=0.135  Sum_probs=162.0

Q ss_pred             CEEEEEEc---CC-CCEEEEEeCCeEEEEEecCCCc--------ceEEEcccCCceeEEEEE------------------
Q 017642           87 TLLHISFN---QD-HGCFAAGTDHGFRIYNCDPFRE--------IFRRDFERGGGIGVVEML------------------  136 (368)
Q Consensus        87 ~v~~~~~s---~~-g~~l~~~~d~~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~------------------  136 (368)
                      ..+++.|.   ++ ..++++|.++.|++|+......        .....+  .+...+..+.                  
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI--QTGLPTLHLSFSSSCSYSENLHDGDGNV   94 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE--ECSSCEEEEEECTTCEEECC--------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE--ecCCCeeeEeecCCccccccccCCCcce
Confidence            45667774   33 4577778899999998743211        001111  1222222222                  


Q ss_pred             --EeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE-----Ee-cCCceeEEEEee--------CccEEE---eCCcEE
Q 017642          137 --FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-----LS-FRSEVRSVKLRR--------DRIIVV---LEQKIF  197 (368)
Q Consensus       137 --~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~-----~~-~~~~v~~~~~~~--------~~~~l~---~d~~i~  197 (368)
                        +.++...+++++.|     ++|+|||+++++....     +. |.+.|.+++|+|        |+++++   .|++|+
T Consensus        95 ~~~~~~~~~las~~~d-----~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~  169 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQD-----NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI  169 (393)
T ss_dssp             --CCEEEEEEEEEETT-----SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred             eecCCCCCEEEEEeCC-----CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence              23456678888888     9999999988865432     23 899999999998        788888   599999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee--------------------------
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--------------------------  251 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~--------------------------  251 (368)
                      |||++++.++..+..|...+.+++|+|++..++ + +|+.|+.|++|+......                          
T Consensus       170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l-~-~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQL-I-VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEETTEEEEEEEECSSCEEEEEEETTEEEEE-E-EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEECCCCceeeeecCCCCCcEEEEECCCCCceE-E-ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            999998888888888999999999999986533 3 377899999998764221                          


Q ss_pred             eeeeccCcceEEEEEC-CCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEE------------------EEe
Q 017642          252 KFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL------------------AFS  312 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~s-p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l------------------~~s  312 (368)
                      ....+|...+.++.|+ ++|+.|++++.|+. +++||+..++....+..  |...+..+                  .|+
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC---------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEc
Confidence            1123577788899986 79999999999999 99999988776655554  33333333                  333


Q ss_pred             c--CCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          313 S--NAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       313 p--~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +  ++.++++|+.||+|+|||+.+++....
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~  354 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSI  354 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            3  344677888999999999998876543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=6.9e-24  Score=182.05  Aligned_cols=195  Identities=9%  Similarity=0.028  Sum_probs=136.3

Q ss_pred             CCCCCEEEEEEcCC----CCEEEEEe---------------------CCeEEEEEecCCCcceEEEcccCCceeEEEEEE
Q 017642           83 SPPPTLLHISFNQD----HGCFAAGT---------------------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF  137 (368)
Q Consensus        83 ~h~~~v~~~~~s~~----g~~l~~~~---------------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (368)
                      .+...|.+++|+||    +++++.++                     |+.|++|++.+..........+.....+..+++
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            44557777788887    66666543                     555777777443322222111345555555655


Q ss_pred             -eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cC---CceeEEEEeeCccEEE---------------eCCcEE
Q 017642          138 -RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR---SEVRSVKLRRDRIIVV---------------LEQKIF  197 (368)
Q Consensus       138 -~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~---~~v~~~~~~~~~~~l~---------------~d~~i~  197 (368)
                       .+++.++++++.|     ++|+|||+++|++++++. |.   ..+.+++|+|++.+++               .|++|+
T Consensus       189 ~~g~~~~LaSgS~D-----~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          189 VQGMQEALLGTTIM-----NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EETSTTEEEEEETT-----SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred             cCCCCceEEEecCC-----CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence             4577888998888     999999999999999997 33   3677889999998863               478999


Q ss_pred             EEEcCCCeEEEEEe-----ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceE-EEEECCCC
Q 017642          198 VYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIA-CFALTQDG  270 (368)
Q Consensus       198 vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~-~v~~sp~g  270 (368)
                      +||..+++.+..+.     +|...+.  ..+.++.  +++ +|+.|++|+||+... +.+.++.+|...+. +++|+|||
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~--~lA-SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDH--CAA-AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEE--EEEEETT--EEE-EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeE--ccccCCC--EEE-EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence            99999998877652     3333322  2222333  344 478999999988776 56777888877655 68999999


Q ss_pred             CEEEEEeCCCcEEEEEEC
Q 017642          271 QLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~  288 (368)
                      ++|++|+.|++ |+|||+
T Consensus       339 ~~LaSGS~D~T-IklWd~  355 (356)
T 2w18_A          339 SHLLAGQKDGN-IFVYHY  355 (356)
T ss_dssp             SEEEEECTTSC-EEEEEE
T ss_pred             CEEEEEECCCc-EEEecC
Confidence            99999999999 999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.4e-22  Score=183.93  Aligned_cols=226  Identities=12%  Similarity=0.041  Sum_probs=171.5

Q ss_pred             CCEEEEEe-C------CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642           97 HGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (368)
Q Consensus        97 g~~l~~~~-d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~  169 (368)
                      +..++.++ +      +.|++||++... .  ..+. .+...+.++.|+|++..++.++.+.  .+..|++||+.+++..
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~--~~l~-~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~  216 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-Q--FVVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVR  216 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS-C--EEEE-EESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC-C--EEEe-CCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEE
Confidence            55565555 3      469999987433 2  2332 5667889999999998777766540  0138999999999887


Q ss_pred             EEEecCCceeEEEEeeCccEEE-e---C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC--eE
Q 017642          170 GELSFRSEVRSVKLRRDRIIVV-L---E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QV  241 (368)
Q Consensus       170 ~~~~~~~~v~~~~~~~~~~~l~-~---d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i  241 (368)
                      ....+...+.+++|+|||+.++ .   +  ..|++||+++++. ..+..+...+..++|+|+|+.+++..  ..++  .|
T Consensus       217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s--~~~g~~~i  293 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQV  293 (415)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE--CTTSSCEE
T ss_pred             EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE--CCCCCcEE
Confidence            5555888999999999998776 2   3  3599999988876 55666778899999999999755433  3345  56


Q ss_pred             EEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE
Q 017642          242 RVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       242 ~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  318 (368)
                      .+|+........+..+...+.+++|+|+|++|++++.+   .. |++||+.+++.. .+..  +. .+.+++|+|||++|
T Consensus       294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~~-~~~~~~~spdg~~l  368 (415)
T 2hqs_A          294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--TF-LDETPSLAPNGTMV  368 (415)
T ss_dssp             EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--SS-SCEEEEECTTSSEE
T ss_pred             EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--CC-CcCCeEEcCCCCEE
Confidence            66777766666667777889999999999999888764   46 999999988874 4444  33 78999999999999


Q ss_pred             EEEeCCC---eEEEEEccCCC
Q 017642          319 AVSSDKG---TVHVFNLKVNS  336 (368)
Q Consensus       319 ~s~s~dg---~i~iwd~~~~~  336 (368)
                      ++++.++   .|++||+..+.
T Consensus       369 ~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEEETTEEEEEEEETTSCC
T ss_pred             EEEEcCCCccEEEEEECCCCc
Confidence            9888776   79999987543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=5.8e-23  Score=186.36  Aligned_cols=245  Identities=13%  Similarity=0.062  Sum_probs=174.4

Q ss_pred             CCEEEEEEcCCCC-EEEEEe-----CC----eEEEEEe--cCCCcceEEEcccCCceeEEEEEEe---------------
Q 017642           86 PTLLHISFNQDHG-CFAAGT-----DH----GFRIYNC--DPFREIFRRDFERGGGIGVVEMLFR---------------  138 (368)
Q Consensus        86 ~~v~~~~~s~~g~-~l~~~~-----d~----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------------  138 (368)
                      ..+....|++.|. ++++|+     ++    .++|||+  .+++......+. .+...+..+++.               
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3577778888875 555665     35    6999999  777755444443 443333333332               


Q ss_pred             -CCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eC---CcEEEEEcCCCeEEEEEe
Q 017642          139 -CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LE---QKIFVYNFADLKLLHQIE  211 (368)
Q Consensus       139 -~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d---~~i~vwd~~~~~~~~~~~  211 (368)
                       ...+++++.... .-..+.|++||+..+.......|...+.+++|+|||+.++   .+   ..|++||+++++.. .+.
T Consensus       142 ~~~~l~~~s~~~~-~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          142 FRTRIAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             TTCEEEEEEECSS-SSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             CCCEEEEEEecCC-CCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence             334444443321 0001589999987554433334899999999999999887   34   39999999998875 455


Q ss_pred             ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC-CC--cEEEEEEC
Q 017642          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG--TLVRIFNT  288 (368)
Q Consensus       212 ~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg--~~i~iwd~  288 (368)
                      .+...+.+++|+|||+.++++.+...+..|++|+........+..|...+.+++|+|||++|++++. ++  . |.+||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEEEEC
Confidence            6777899999999999755443222234478888877777788888899999999999998888876 44  5 778898


Q ss_pred             CCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC---CeEEEEEccCCCC
Q 017642          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSG  337 (368)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~  337 (368)
                      .+++.. .+..  +...+.+++|+|||++|++++.+   ..|++||+.+++.
T Consensus       299 ~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          299 NGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             TSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             CCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            887743 3433  45678999999999999988754   5899999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=1.2e-21  Score=172.64  Aligned_cols=238  Identities=11%  Similarity=0.103  Sum_probs=167.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-C-CeEEEEEec--CCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCc
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-D-HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNK  157 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d-~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~  157 (368)
                      .|...+.+++|+|+|++|++++ + +.|++|+++  ++.......+. .+. .+..+.|++++..+ +++..+     +.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~-----~~  107 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPG-SLTHISTDHQGQFVFVGSYNA-----GN  107 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSS-CCSEEEECTTSSEEEEEETTT-----TE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-cCC-CCcEEEEcCCCCEEEEEecCC-----Ce
Confidence            3556788899999999888887 4 679999998  44433333443 222 66788899887654 444444     88


Q ss_pred             EEEEeCC---CCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCC-CeEEE----EEec-cCCCeeEEEEec
Q 017642          158 VMIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLLH----QIET-IANPKGLCAVSQ  224 (368)
Q Consensus       158 i~vwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~-~~~~~----~~~~-~~~~v~~~~~~~  224 (368)
                      |.+||+.   ..+.+..+.....+.+++|+|++++++    .++.|++||+.+ ++...    .+.. ....+..++|+|
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  187 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP  187 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             EEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence            9999984   344555555666799999999998666    478999999987 65432    2222 234667899999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecCc--ce---eeeee---cc---CcceEEEEECCCCCEEEE-EeCCCcEEEEEECC--C
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYAS--KR---TKFIM---AH---DSRIACFALTQDGQLLAT-SSTKGTLVRIFNTL--D  290 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~~--~~---~~~~~---~~---~~~i~~v~~sp~g~~l~s-~~~dg~~i~iwd~~--~  290 (368)
                      +++.++++  +..++.|.+|+...  ..   ...+.   ..   ...+..++|+|+|++|++ +..++. |++||+.  +
T Consensus       188 dg~~l~~~--~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~  264 (343)
T 1ri6_A          188 NEQYAYCV--NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDG  264 (343)
T ss_dssp             TSSEEEEE--ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTS
T ss_pred             CCCEEEEE--eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCC
Confidence            99865543  45689999988743  21   11221   11   235678999999997774 446888 9999998  3


Q ss_pred             C--ceeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEcc
Q 017642          291 G--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLK  333 (368)
Q Consensus       291 ~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~  333 (368)
                      +  +.+..+..  + ..+.+++|+|+|++|++++ .++.|.+|+++
T Consensus       265 ~~~~~~~~~~~--~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          265 SVLSKEGFQPT--E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CCEEEEEEEEC--S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CceEEeeeecC--C-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            2  34444443  2 3488999999999888887 68999999775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=1.7e-21  Score=182.24  Aligned_cols=248  Identities=11%  Similarity=0.054  Sum_probs=186.1

Q ss_pred             CCCCEEEEEEcC----CCCEEEEEe--CCeEEEEEecCCCcceEEEccc--------CCceeEEEEEEeCC-eEEEEecC
Q 017642           84 PPPTLLHISFNQ----DHGCFAAGT--DHGFRIYNCDPFREIFRRDFER--------GGGIGVVEMLFRCN-ILALVGGG  148 (368)
Q Consensus        84 h~~~v~~~~~s~----~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~s~~  148 (368)
                      +...+..++|+|    ||++|++++  ++.|.|||..+.+.........        .....+..+.++++ ..++++..
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            455689999999    999998887  7889999988776653332210        01225778888874 45666666


Q ss_pred             CCCCCCCCcEEEEeCCCCcEEE--EEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEec----cCCCee
Q 017642          149 PDPQYPLNKVMIWDDHQSRCIG--ELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIET----IANPKG  218 (368)
Q Consensus       149 ~d~~~~~~~i~vwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~----~~~~v~  218 (368)
                      .+     +.|.+||..+++.+.  .+.+...+.++.|+|++++++    .+++|.+||+.+++++..+..    |.+...
T Consensus       300 ~~-----g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          300 ET-----GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             TT-----TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             CC-----CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            66     999999998876544  555777899999999999765    378999999999999888864    332222


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecC--------cceeeeeeccCcceEEEEECCCCCEEEEEe-------CCCcEE
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYA--------SKRTKFIMAHDSRIACFALTQDGQLLATSS-------TKGTLV  283 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~-------~dg~~i  283 (368)
                      .+ ++|++..+ +++....|++|.+|+..        .+.++++..|...+..|+++|+|++|++++       .+++ |
T Consensus       375 ~~-~~p~~g~~-~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v  451 (543)
T 1nir_A          375 NF-VHPKYGPV-WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-V  451 (543)
T ss_dssp             EE-EETTTEEE-EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-E
T ss_pred             cc-CCCCCccE-EEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-E
Confidence            22 46775553 44433358999998765        467788899988889999999999999987       2668 9


Q ss_pred             EEEECCCCcee-EeeEe------ccCcccEEEEEEecCCCEEEEEe-----CCCeEEEEEccCCCCCC
Q 017642          284 RIFNTLDGTLL-QEVRR------GADRAEIYSLAFSSNAQWLAVSS-----DKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       284 ~iwd~~~~~~~-~~~~~------~~~~~~v~~l~~sp~~~~l~s~s-----~dg~i~iwd~~~~~~~~  339 (368)
                      .|||+.+++.. ..+..      ..+...+..+.|+|+|+.|+++.     .|+.|.|||.++++...
T Consensus       452 ~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          452 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             EEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence            99999999877 33321      11456899999999999888662     47999999999987653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=3.6e-21  Score=169.05  Aligned_cols=242  Identities=9%  Similarity=0.061  Sum_probs=169.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC--cEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN--KVM  159 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~--~i~  159 (368)
                      +...+ +++|+|+|++|++++  ++.|.+||+.+++.. ...+. .+.....++.+++++..++....+    ++  .|.
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~----~~~~~i~  111 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ-EGQSSMADVDITPDDQFAVTVTGL----NHPFNMQ  111 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE-ECSSCCCCEEECTTSSEEEECCCS----SSSCEEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc-cCCCCccceEECCCCCEEEEecCC----CCcccEE
Confidence            34456 999999999776665  667999999876651 23332 233333337888888766654432    12  899


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCc-EEEEEcCCCeEE----EEEeccCCCeeEEEEecCCCeEE
Q 017642          160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQK-IFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       160 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~-i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      +||+.+++.+..+.......+++|+|+|++++    .++. |.+|++.....+    ............++|+|+++.++
T Consensus       112 v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~  191 (331)
T 3u4y_A          112 SYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAF  191 (331)
T ss_dssp             EEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred             EEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEE
Confidence            99999999998888777789999999997554    2477 999998753322    11112344567899999998755


Q ss_pred             EEeecCCCCeEEEEecCc-ce---eeeeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCce--eEeeEec--c
Q 017642          231 LVCPGLQKGQVRVEHYAS-KR---TKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL--LQEVRRG--A  301 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~-~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~--~~~~~~~--~  301 (368)
                      ++  +..++.|++|+... +.   +..+.. ...+..++|+|+|++|++++ .++. |.+||+.+++.  +..+...  .
T Consensus       192 v~--~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          192 VA--NLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLI  267 (331)
T ss_dssp             EE--ETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCC
T ss_pred             EE--eCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeeccccccccc
Confidence            54  45688999988764 33   444443 45678999999999776655 4667 99999998877  4433321  0


Q ss_pred             Ccc---cEEEEEEecCCCEEEEEe-CCCeEEEEEccCCC
Q 017642          302 DRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (368)
Q Consensus       302 ~~~---~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~  336 (368)
                      +..   ....++|+|||++|++++ .++.|++||+.+..
T Consensus       268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            111   235689999999886655 56799999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.5e-21  Score=171.51  Aligned_cols=239  Identities=9%  Similarity=-0.001  Sum_probs=176.0

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccC--CceeEEEEEEeCCeEEEEecC------------CC
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERG--GGIGVVEMLFRCNILALVGGG------------PD  150 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~------------~d  150 (368)
                      .+.+++|+|+|++++++.  ++.|.+||+.+++......+.+.  +...+..+.+++++..++.+.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            367789999998775554  56799999987665533333100  112445678888875444442            23


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                           +.|.+||+.+++.+..+.....+.+++|+|++++++ .++.|++||+++++.+..+..+... ..+.|+|++..+
T Consensus       115 -----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l  188 (337)
T 1pby_B          115 -----TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV  188 (337)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred             -----ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence                 899999999999888888777889999999998666 7899999999999988777644311 133788998864


Q ss_pred             EEEeecCCCCe-----------------------EEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          230 VLVCPGLQKGQ-----------------------VRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       230 ~l~~~g~~dg~-----------------------i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                      ++.  +..++.                       |.+|+.......  .+..+...+.+++|+|+|++|+++  ++. |+
T Consensus       189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~  263 (337)
T 1pby_B          189 WNQ--HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LE  263 (337)
T ss_dssp             CCC--CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EE
T ss_pred             eee--ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EE
Confidence            432  333333                       456666554332  234566678899999999998888  677 99


Q ss_pred             EEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +||+.+++.+..+..   ...+.+++|+|||++|++++.++.|++||+.+++...
T Consensus       264 ~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          264 SFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             EEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence            999999998877764   2467899999999999999999999999999886543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=7.7e-22  Score=169.84  Aligned_cols=239  Identities=8%  Similarity=-0.083  Sum_probs=172.7

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|...|.+++|+|+|++|+++.++.|++||+++ .+..  ..+...+...+.++.|++++..++.+..+.. ....|
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l  112 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDGALYAISDKVEF-GKSAI  112 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce--EeccccccccccceEECCCCCEEEEEEeCCC-CcceE
Confidence            344578899999999999999999999999999987 5543  2232122356677889988877666552100 01455


Q ss_pred             EEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcC-CCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      .+|+..+++ ...+.....+..++|+|+++.++    .++.+++|++. .+.....+..+...+..++|+|+++.++++ 
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-  190 (297)
T 2ojh_A          113 YLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN-  190 (297)
T ss_dssp             EEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE-
T ss_pred             EEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE-
Confidence            566655555 34455455689999999998766    47888898863 223345566677788999999999864443 


Q ss_pred             ecCCCCeEEEEec--CcceeeeeeccCcceEEEEECCCCCEEEEEeCC-----------CcEEEEEECCCCceeEeeEec
Q 017642          234 PGLQKGQVRVEHY--ASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-----------GTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       234 ~g~~dg~i~i~~~--~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-----------g~~i~iwd~~~~~~~~~~~~~  300 (368)
                       +..++.+++|..  .......+..|...+.+++|+|+|++|++++.+           +. |++||+.+++........
T Consensus       191 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          191 -SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             -ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEE
T ss_pred             -ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccC
Confidence             445788888665  456667777888889999999999999888765           46 999999888764333321


Q ss_pred             cCcccEEEEEEecCCCEEEEEeCCC
Q 017642          301 ADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      .|...+.+++|+|+|++|++++.+.
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccceECCCCCEEEEEEecc
Confidence            1667899999999999998887553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=3.1e-22  Score=194.97  Aligned_cols=239  Identities=14%  Similarity=0.063  Sum_probs=175.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CC-----eEEEEEecCCCcceEEEcccCCc----------------------eeEEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DH-----GFRIYNCDPFREIFRRDFERGGG----------------------IGVVEM  135 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~~~~~  135 (368)
                      ...|.+++|+|||++|++++  |+     .|++||+++++........ .+.                      ..+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCccee
Confidence            45799999999999998887  55     6999999876654332221 121                      346788


Q ss_pred             EEeCCeEEEEecCCCCCCCCCcEEEEeCCCC---cEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEE
Q 017642          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       136 ~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~  210 (368)
                      .|++++..++.++.      +.|++||+.++   +......+...+..++|+|||+.++  .++.|++||+.+++..+..
T Consensus       115 ~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             EECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             EECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            99999987777664      79999999988   5443333778899999999999887  6889999999988776544


Q ss_pred             eccCCC----------------eeEEEEecCCCeEEEEeecC----------------------------CCC--eEEEE
Q 017642          211 ETIANP----------------KGLCAVSQGVGSLVLVCPGL----------------------------QKG--QVRVE  244 (368)
Q Consensus       211 ~~~~~~----------------v~~~~~~~~~~~~~l~~~g~----------------------------~dg--~i~i~  244 (368)
                      ..+...                +..++|+|||+.++++....                            .++  .|.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            433322                36799999999866543110                            011  56667


Q ss_pred             ecCc-ceeeeee---ccCcceEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCceeEeeEeccCcc---cEEEEEEe
Q 017642          245 HYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSST-----KGTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFS  312 (368)
Q Consensus       245 ~~~~-~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~-----dg~~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~s  312 (368)
                      +... .....+.   .|...+..++| |||++|++++.     +.. |++||+.+++....+..+ ...   .+.+++|+
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSLRFL  345 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCCEEC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCceEEC
Confidence            7665 4444333   47788999999 99998887654     456 999999999887666652 122   34689999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcc
Q 017642          313 SNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~  333 (368)
                      |||+++++++.||.++||.++
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEEC
T ss_pred             CCCeEEEEecCCCccEEEEEc
Confidence            999998899999988888876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=8.1e-21  Score=168.16  Aligned_cols=238  Identities=14%  Similarity=0.087  Sum_probs=178.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--------CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCC
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP  154 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~  154 (368)
                      ....+..++|+|+|++|++++        ++.|.+||..+++.......  .  .....+.+++++. ++++...+    
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~--~~~~~~~~s~dg~~l~v~~~~~----  110 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--D--LKPFGATINNTTQTLWFGNTVN----  110 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--S--SCCCSEEEETTTTEEEEEETTT----
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--C--CCcceEEECCCCCEEEEEecCC----
Confidence            345788999999999888877        33599999887665533322  2  2245667777664 44555555    


Q ss_pred             CCcEEEEeCCCCcEEEEEec-CC---------ceeEEEEeeCccEEE--e---CCcEEEEEcCCCeEEEEEeccCCCeeE
Q 017642          155 LNKVMIWDDHQSRCIGELSF-RS---------EVRSVKLRRDRIIVV--L---EQKIFVYNFADLKLLHQIETIANPKGL  219 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~~-~~---------~v~~~~~~~~~~~l~--~---d~~i~vwd~~~~~~~~~~~~~~~~v~~  219 (368)
                       +.|.+||..+++.+..+.. ..         .+.+++|+|++..++  .   ++.|.+||+++++.+..+..+...+..
T Consensus       111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence             8999999999999888873 22         278899999988665  2   678999999999998888755556788


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeec----cCcceEEEEECCCCCEEEEEeCC-CcEEEEEECCCCce
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMA----HDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTL  293 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~----~~~~i~~v~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~  293 (368)
                      ++|+++++.++++   ..++.|.+|+.... ....+..    +...+..++|+|+|++|++++.+ +. |.+||+.+++.
T Consensus       190 ~~~s~dg~~l~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTT---NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEE---CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred             EEECCCCCEEEEE---cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence            9999999975543   35889999776553 3334432    45568899999999977776655 77 99999999998


Q ss_pred             eEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCCCC
Q 017642          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGS  338 (368)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~  338 (368)
                      +..+..+  .  ...++|+|+|+++++++ .++.|.+||+.+++..
T Consensus       266 ~~~~~~~--~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          266 LAKVAAP--E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             EEEEECS--S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEcC--C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            8887753  2  25699999999666555 7899999999887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=6.2e-21  Score=168.83  Aligned_cols=239  Identities=12%  Similarity=0.152  Sum_probs=159.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC-CCCCCCCCcEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVM  159 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~~~i~  159 (368)
                      +...+..++|+|||++++++.   ++.|.+|+++.+.......+. .+......+++++++..++.++ .+     +.|.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~  111 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHK-----GTAE  111 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTT-----TEEE
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCC-----CEEE
Confidence            345567799999999444443   356999999766543333322 3444566788888876544443 44     8999


Q ss_pred             EEeCC-CCc--EEEEEecC----------CceeEEEEeeCccEEE---eCCcEEEEEcC-CCeEEE--EEecc-CCCeeE
Q 017642          160 IWDDH-QSR--CIGELSFR----------SEVRSVKLRRDRIIVV---LEQKIFVYNFA-DLKLLH--QIETI-ANPKGL  219 (368)
Q Consensus       160 vwd~~-~~~--~~~~~~~~----------~~v~~~~~~~~~~~l~---~d~~i~vwd~~-~~~~~~--~~~~~-~~~v~~  219 (368)
                      +|++. ++.  .+..+.+.          ..+.+++|+|++++++   .++.|++||+. +++...  .+... ......
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            99986 332  33333322          2478899999999555   36789999998 554332  22222 225667


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCc--ce---eeeeeccC------cceEEEEECCCCCEEE-EEeCCCcEEEEEE
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KR---TKFIMAHD------SRIACFALTQDGQLLA-TSSTKGTLVRIFN  287 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~---~~~~~~~~------~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd  287 (368)
                      ++|+|+|+.++++  +..++.+.+|+...  ..   +..+....      ..+..++|+|||++|+ +...++. |.+||
T Consensus       192 ~~~spdg~~l~v~--~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~  268 (347)
T 3hfq_A          192 LVFSPDGQYAFLA--GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFA  268 (347)
T ss_dssp             EEECTTSSEEEEE--ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEE
T ss_pred             EEECCCCCEEEEE--eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEE
Confidence            9999999875543  45678999977653  22   22222222      3588999999999774 5556788 99999


Q ss_pred             CCC-C--ceeEeeEeccCcccEEEEEEecCCCEEEEEeC-CCeEEEEEcc
Q 017642          288 TLD-G--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLK  333 (368)
Q Consensus       288 ~~~-~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~  333 (368)
                      +.. +  +.+..+..  +...+..++|+|||++|++++. ++.|.+|+++
T Consensus       269 ~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          269 VTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            973 2  34444443  3456889999999998888775 5899999664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=8.8e-21  Score=177.40  Aligned_cols=230  Identities=11%  Similarity=0.098  Sum_probs=177.2

Q ss_pred             EEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC--CCCcE
Q 017642           92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD--HQSRC  168 (368)
Q Consensus        92 ~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~--~~~~~  168 (368)
                      +|+|++.+++++. ++.|.+||..+++..  ..+..++.  +..+.+++++..+++++.|     +.|++||+  .++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--~~i~~g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~  214 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--KVIDTGYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTK  214 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE--EEEECSTT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE--EEEecCcc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcE
Confidence            3789998888888 888999998877665  33431333  6788899999888888877     99999999  88999


Q ss_pred             EEEEecCCceeEEEEee----CccEEE----eCCcEEEEEcCCCeEEEEEecc-----------CCCeeEEEEecCCCeE
Q 017642          169 IGELSFRSEVRSVKLRR----DRIIVV----LEQKIFVYNFADLKLLHQIETI-----------ANPKGLCAVSQGVGSL  229 (368)
Q Consensus       169 ~~~~~~~~~v~~~~~~~----~~~~l~----~d~~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~  229 (368)
                      +.++.+...+..++|+|    ||++++    .++.|.+||..+++++..+..+           ...+..+.+++++..+
T Consensus       215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            99998888899999999    998877    4899999999999998888642           2257789999998875


Q ss_pred             EEEeecCCCCeEEEEecCcc-eee-eeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEecc--Ccc
Q 017642          230 VLVCPGLQKGQVRVEHYASK-RTK-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGA--DRA  304 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~-~~~-~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~--~~~  304 (368)
                      ++.  ...++.|.+|+.... .+. ....+...+..+.|+|+|++|++++ .++. |.+||+.+++++..+..+.  |.+
T Consensus       295 ~vs--~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          295 IVN--VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             EEE--ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCT
T ss_pred             EEE--ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCC
Confidence            543  567899999876542 222 1223556788999999999776554 5778 9999999999988887531  433


Q ss_pred             cEEEEEEecC-CCEEEEEe-CCCeEEEEEccC
Q 017642          305 EIYSLAFSSN-AQWLAVSS-DKGTVHVFNLKV  334 (368)
Q Consensus       305 ~v~~l~~sp~-~~~l~s~s-~dg~i~iwd~~~  334 (368)
                      ....+ ++|+ |.+++++. .|++|.|||+.+
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            33333 4777 56666765 689999999987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=3.3e-21  Score=182.61  Aligned_cols=233  Identities=8%  Similarity=0.003  Sum_probs=165.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCc-eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      ..+|++++|+|||++||.++  |+.++||+++.++.   ..+. .+. ..+....|+++ ..+++++.+.  .+...++|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt-~~~~~~~~~~~~spd-~~l~~~~~~~--g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLN-REPINSVLDPHYGVG-RVILVRDVSK--GAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECC-SSCCSEECEECTTCS-EEEEEEECST--TSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---Eeee-cccccccccccCCCC-eEEEEeccCC--CCcceEEE
Confidence            45799999999999998876  77799999865432   2333 333 57888899998 4444332200  01445554


Q ss_pred             eCC---CCcEEEEEecCCceeEEEEeeCccE--EE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          162 DDH---QSRCIGELSFRSEVRSVKLRRDRII--VV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       162 d~~---~~~~~~~~~~~~~v~~~~~~~~~~~--l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      .+.   .+... .+.....+...+|+|++..  ++  .++.+.+||+.+++.......+.   ..++|+|||+.++.+..
T Consensus        94 ~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~  169 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGF  169 (582)
T ss_dssp             EEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEE
T ss_pred             EEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEE
Confidence            432   23333 4443444557788888753  33  45667799999887665554332   78999999997543321


Q ss_pred             cC-CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC--cEEEEEECCCCceeEeeEeccCcccEEEEE-
Q 017642          235 GL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAEIYSLA-  310 (368)
Q Consensus       235 g~-~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg--~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~-  310 (368)
                      .. ..+.|++|+........+..|...+..++|+|||++|+++..++  . |++||+.+++.. .+..  +...+..++ 
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~~~  245 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSYRP  245 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHHCC
T ss_pred             cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhhhh
Confidence            11 11678888877777778888989999999999999999888888  7 999999988877 5554  555566666 


Q ss_pred             -------EecCCCEEEEEeCCCeEEEEEc
Q 017642          311 -------FSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       311 -------~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                             |+|||.++++++.|++++||++
T Consensus       246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                   9999998899999999999999

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=1e-19  Score=159.70  Aligned_cols=230  Identities=13%  Similarity=0.092  Sum_probs=164.8

Q ss_pred             EEcCCCCEE-EEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642           92 SFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        92 ~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      .|.+++.++ +++. ++.|++||.++++......   .+.... .+.+++++. +++++..+     +.|.+||+.+++.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT---LGYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE---CCCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE---ccCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence            466666664 4555 7779999998776654333   233344 888988875 44444444     8999999999987


Q ss_pred             -EEEEecCCceeE-EEEeeCccEEE--e-C-C--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642          169 -IGELSFRSEVRS-VKLRRDRIIVV--L-E-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       169 -~~~~~~~~~v~~-~~~~~~~~~l~--~-d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                       ...+........ ++|+|++++++  . + +  .|++||+++++.+..+..+ .....++|+|+|+.++++.  ..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~--~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILID--RSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEE--ETTTT
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEe--cCCCc
Confidence             777774444455 99999999877  2 3 3  8999999999988887654 3457899999998755543  34566


Q ss_pred             -EEEEecCcce-e----eeeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCce---eEeeEeccCcccEEEEE
Q 017642          241 -VRVEHYASKR-T----KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLA  310 (368)
Q Consensus       241 -i~i~~~~~~~-~----~~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~---~~~~~~~~~~~~v~~l~  310 (368)
                       +.+|+..... +    .........+..++|+|+|++|++++ .++. |++||+.+++.   +..+..   ...+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceEE
Confidence             8887765311 1    11223345689999999999665554 5777 99999999988   766664   35678999


Q ss_pred             EecCCCEEEEEe-CCCeEEEEEccCCCC
Q 017642          311 FSSNAQWLAVSS-DKGTVHVFNLKVNSG  337 (368)
Q Consensus       311 ~sp~~~~l~s~s-~dg~i~iwd~~~~~~  337 (368)
                      |+|||++|++++ .++.|.+||+.+++.
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            999999776664 578899999988765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=5e-20  Score=162.69  Aligned_cols=229  Identities=11%  Similarity=0.042  Sum_probs=164.8

Q ss_pred             EEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           90 HISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      .+++++++++++++. ++.|++||+.+++.......  ........+.+++++. ++++...+     +.|.+||+.+++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCK   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCc
Confidence            346778888888887 88899999887655433332  2212355677888764 44555555     899999999999


Q ss_pred             EEEEEecC-------CceeEEEEeeCccEEE---e------------CCcEEEEEcCCCe---EEEEEeccCCCeeEEEE
Q 017642          168 CIGELSFR-------SEVRSVKLRRDRIIVV---L------------EQKIFVYNFADLK---LLHQIETIANPKGLCAV  222 (368)
Q Consensus       168 ~~~~~~~~-------~~v~~~~~~~~~~~l~---~------------d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~  222 (368)
                      .+..+...       ..+..++|+|+|++++   .            ++.|.+||+.+++   .+..+.. ...+.+++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~  155 (349)
T 1jmx_B           77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRA  155 (349)
T ss_dssp             EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEE
T ss_pred             EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeE
Confidence            88877632       2388999999998877   2            3899999998843   3334433 345778999


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeecc--------------------------------------------
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH--------------------------------------------  257 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~--------------------------------------------  257 (368)
                      +++++ +++ . +   +.|.+|+... +....+..+                                            
T Consensus       156 s~dg~-l~~-~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          156 ADDGS-LYV-A-G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             CTTSC-EEE-E-S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             CCCCc-EEE-c-c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            99998 443 2 2   3377776543 333332211                                            


Q ss_pred             ------------------------CcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEe
Q 017642          258 ------------------------DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS  312 (368)
Q Consensus       258 ------------------------~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s  312 (368)
                                              ...+..++|+| +|++|+++  ++. |.+||+.+++.+..+..   ...+.+++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~s  303 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANL---DHTYYCVAFD  303 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEEC---SSCCCEEEEC
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcC---CCCccceEEC
Confidence                                    11355778889 99998888  778 99999999998877764   2357799999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |+|++|++++.++.|++||+++++..
T Consensus       304 ~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          304 KKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             SSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCCCEEEEecCCCeEEEEecccccee
Confidence            99998888888999999999887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=3.2e-20  Score=159.68  Aligned_cols=216  Identities=10%  Similarity=0.008  Sum_probs=161.9

Q ss_pred             CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-CcEEEEEe-c-CCceeEE
Q 017642          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-F-RSEVRSV  181 (368)
Q Consensus       105 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-~~~~~~~~-~-~~~v~~~  181 (368)
                      ++.|++||+.+.+..  ...  .+...+.++.|++++..++.+..      +.|++||+.+ ++...... + ...+.++
T Consensus        21 ~~~i~~~d~~~~~~~--~~~--~~~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR--VVW--QTPELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             CEEEEEEETTTTEEE--EEE--EESSCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             ceeEEEEeCCCCcee--eec--cCCcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccce
Confidence            566999998765544  223  45667889999999888877663      8999999999 87776665 3 4788999


Q ss_pred             EEeeCccEEE--e---C--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec--Ccceee
Q 017642          182 KLRRDRIIVV--L---E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTK  252 (368)
Q Consensus       182 ~~~~~~~~l~--~---d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~  252 (368)
                      +|+|++++++  .   +  ..|.+|++.+++ ...+..+ ..+..++|+|+++.++++  +..++.++||..  ......
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~--~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYC--GIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEE--EEETTEEEEEEEETTTCCEE
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEE--ECCCCceEEEEEECCCCcce
Confidence            9999999888  2   2  345555555554 3444333 347889999999975543  456888888764  445566


Q ss_pred             eeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC------
Q 017642          253 FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------  324 (368)
Q Consensus       253 ~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------  324 (368)
                      .+..+...+.+++|+|+|++|+.++ .++. ++||++. .+..+..+..  +...+..++|+|+|++|++++.+      
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDH  243 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence            6777888999999999999887666 5888 9999986 5555666665  56789999999999999888765      


Q ss_pred             -----CeEEEEEccCCCC
Q 017642          325 -----GTVHVFNLKVNSG  337 (368)
Q Consensus       325 -----g~i~iwd~~~~~~  337 (368)
                           +.|++||+.+++.
T Consensus       244 ~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CSSEEEEEEEEETTSCSC
T ss_pred             cccCceEEEEEecCCCCc
Confidence                 5699999987754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=4.5e-19  Score=157.73  Aligned_cols=237  Identities=13%  Similarity=0.108  Sum_probs=157.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-----CeEEEEEecCC--CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           84 PPPTLLHISFNQDHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~d-----~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      +...+..++|+|||++|++++.     +.|.+|+++..  +........ .+......+++ ....++++...+     +
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~-dg~~l~~~~~~~-----~  120 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT-NGKNIVTANYSG-----G  120 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE-CSSEEEEEETTT-----T
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE-CCCEEEEEECCC-----C
Confidence            5667788999999999988884     46999999864  222222222 33445556666 333344444444     8


Q ss_pred             cEEEEeCCCCcEEE----EEec-----------CCceeEEEEeeCccEEE----eCCcEEEEEcCCCe-------EE---
Q 017642          157 KVMIWDDHQSRCIG----ELSF-----------RSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK-------LL---  207 (368)
Q Consensus       157 ~i~vwd~~~~~~~~----~~~~-----------~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~-------~~---  207 (368)
                      .|.+|++.....+.    .+.+           ...+.+++|+|+|++++    .++.|++|++....       ..   
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            99999987543221    1111           22357899999998665    37899999986433       11   


Q ss_pred             --EEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee---ee---eccCcceEEEEECCCCCEEEEEeC
Q 017642          208 --HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FI---MAHDSRIACFALTQDGQLLATSST  278 (368)
Q Consensus       208 --~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~---~~~~~~i~~v~~sp~g~~l~s~~~  278 (368)
                        ..+ .........++|+|+++.++++  +..++.|.+|+.....+.   .+   ..+......++|+|||++|+++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~--~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLI--NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEE--ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEE--cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence              111 2234456789999999875543  446889999877543332   22   223345789999999998877665


Q ss_pred             C--CcEEEEEECC--CCc--eeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEcc
Q 017642          279 K--GTLVRIFNTL--DGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLK  333 (368)
Q Consensus       279 d--g~~i~iwd~~--~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~  333 (368)
                      +  +. |.+|++.  +++  .+..+..   ...+.+++|+|||++|++++ .++.|.+|+++
T Consensus       279 ~~~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          279 LKADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SSSCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            5  77 9999985  444  3333332   34678999999999888887 67899997765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=5.3e-20  Score=178.28  Aligned_cols=244  Identities=11%  Similarity=0.044  Sum_probs=171.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecC-----CCcceEEEcccCCcee--------------EEEEEEeCCeE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP-----FREIFRRDFERGGGIG--------------VVEMLFRCNIL  142 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  142 (368)
                      ..+...+.+++|+|||++|+++.++.|++|++.+     ++..  .... .+...              +..+.|++++.
T Consensus       117 ~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~--~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~  193 (706)
T 2z3z_A          117 FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI--AVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGS  193 (706)
T ss_dssp             ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE--ESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred             cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE--Eecc-CCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence            3456678889999999999998899999999987     5433  2121 22221              36788999887


Q ss_pred             EEEecCCCC----------------------------CCCCCcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE
Q 017642          143 ALVGGGPDP----------------------------QYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV  191 (368)
Q Consensus       143 ~~~s~~~d~----------------------------~~~~~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~  191 (368)
                      .++.++.|.                            ...+..|++||+.+++......   +...+..++|+|||+.++
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence            776654110                            0012679999999887655442   556799999999999776


Q ss_pred             ---eCC-----cEEEEEcCCCeEEEEEe-c-cCC---CeeEEEEec--CCCeEEEEeecCCCCeEEEEec--Ccceeeee
Q 017642          192 ---LEQ-----KIFVYNFADLKLLHQIE-T-IAN---PKGLCAVSQ--GVGSLVLVCPGLQKGQVRVEHY--ASKRTKFI  254 (368)
Q Consensus       192 ---~d~-----~i~vwd~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~  254 (368)
                         .++     .|++||+.+++....+. . ...   .+..++|+|  +|+.  +++ +..++.++||..  +++.+..+
T Consensus       274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~--l~~-~~~~g~~~l~~~~~~~~~~~~l  350 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF--IWQ-SRRDGWNHLYLYDTTGRLIRQV  350 (706)
T ss_dssp             EEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE--EEE-ECTTSSCEEEEEETTSCEEEEC
T ss_pred             EEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE--EEE-EccCCccEEEEEECCCCEEEec
Confidence               344     89999999984333332 2 221   235689999  8873  333 557888888654  45667777


Q ss_pred             eccCcceEE-EEECCCCCEEEEEeC-CC----cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC----
Q 017642          255 MAHDSRIAC-FALTQDGQLLATSST-KG----TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK----  324 (368)
Q Consensus       255 ~~~~~~i~~-v~~sp~g~~l~s~~~-dg----~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----  324 (368)
                      ..|...+.. ++|+|+|+.|+.++. ++    . |..||+.+++ ...+.   +...+.+++|+|||++|+..+.+    
T Consensus       351 ~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~-l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p  425 (706)
T 2z3z_A          351 TKGEWEVTNFAGFDPKGTRLYFESTEASPLERH-FYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVP  425 (706)
T ss_dssp             CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBE-EEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred             CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEE-EEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCC
Confidence            788878877 799999997765544 44    4 7778877766 33443   45578999999999988776433    


Q ss_pred             CeEEEEEccCCC
Q 017642          325 GTVHVFNLKVNS  336 (368)
Q Consensus       325 g~i~iwd~~~~~  336 (368)
                      +.|++||+.+++
T Consensus       426 ~~i~l~d~~~~~  437 (706)
T 2z3z_A          426 RKVTVTNIGKGS  437 (706)
T ss_dssp             CEEEEEESSSCE
T ss_pred             cEEEEEECCCCe
Confidence            569999998765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=3.7e-20  Score=180.37  Aligned_cols=234  Identities=10%  Similarity=0.037  Sum_probs=171.7

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCC--cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      .|.+++|+|||++|++++++.|++||+.++.  ..  ..+. .+...+..+.|+|++..++.+..      +.|++||+.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~--~~l~-~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~  180 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV--RQLT-HGEGFATDAKLSPKGGFVSFIRG------RNLWVIDLA  180 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC--CBCC-CSSSCEEEEEECTTSSEEEEEET------TEEEEEETT
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE--EEcc-cCCcccccccCCCCCCEEEEEeC------CcEEEEecC
Confidence            4788999999999999999889999998762  22  2232 45567889999999987777664      789999999


Q ss_pred             CCcEEEEEe-cCCc----------------eeEEEEeeCccEEE---eCC------------------------------
Q 017642          165 QSRCIGELS-FRSE----------------VRSVKLRRDRIIVV---LEQ------------------------------  194 (368)
Q Consensus       165 ~~~~~~~~~-~~~~----------------v~~~~~~~~~~~l~---~d~------------------------------  194 (368)
                      +++...... +...                +..++|+|||+.++   .|+                              
T Consensus       181 ~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          181 SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            887665444 2221                47899999999877   344                              


Q ss_pred             ---cEEEEEcCC-CeEEEEEe--ccCCCeeEEEEecCCCeEEEEee--cCCCCeEEEEecCcceee-eeeccCc----ce
Q 017642          195 ---KIFVYNFAD-LKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP--GLQKGQVRVEHYASKRTK-FIMAHDS----RI  261 (368)
Q Consensus       195 ---~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~--g~~dg~i~i~~~~~~~~~-~~~~~~~----~i  261 (368)
                         .|++||+.+ ++......  .+...+..++| |||+.+++...  +..+..|++|+....... .+..+..    .+
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  339 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH  339 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence               789999988 77554432  35567888999 99998665542  223567777876654433 3344432    45


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECC-CCceeEeeEeccCcccEEEE-EEecCCCEEEE-EeCCC--eEEEEEccC
Q 017642          262 ACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSL-AFSSNAQWLAV-SSDKG--TVHVFNLKV  334 (368)
Q Consensus       262 ~~v~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~v~~l-~~sp~~~~l~s-~s~dg--~i~iwd~~~  334 (368)
                      ..++|+|||+++++++.||. ++||.+. +++ ...+..  +...+..+ .|+|||+.|+. ++.++  .++||++..
T Consensus       340 ~~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             SCCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            68999999999999999998 8888765 445 656665  55678887 59999997754 44555  899999975

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=1.1e-18  Score=154.27  Aligned_cols=226  Identities=11%  Similarity=0.073  Sum_probs=167.5

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCC------ceeEEEEEEeCCeEEE-Eec-CCCCCCCC
Q 017642           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGG------GIGVVEMLFRCNILAL-VGG-GPDPQYPL  155 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~s~-~~d~~~~~  155 (368)
                      ..+..++|+++|++++++.  ++.|.+||.++++...........      ......+.+++++..+ ++. +.+     
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-----  163 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-----  163 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-----
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-----
Confidence            3467789999999776555  577999999877665443331000      1136778888875433 333 344     


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec----cCCCeeEEEEecCCC
Q 017642          156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET----IANPKGLCAVSQGVG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~  227 (368)
                      +.|.+||..+++.+..+. +...+.+++|+|++..++   .++.|.+||+.+++.+..+..    +...+..++|+|+++
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            889999999999999888 667799999999998776   578999999999998887764    344566799999999


Q ss_pred             eEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          228 SLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      .++++  ...++.|.+|+... +.+..+....  ...++|+|+|+++++++ .++. |.+||+.+++.+..+..   ...
T Consensus       244 ~l~~~--~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~~~---~~~  315 (353)
T 3vgz_A          244 RAFIT--DSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTFDT---PTH  315 (353)
T ss_dssp             EEEEE--ESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEEEC---CSE
T ss_pred             EEEEE--eCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEEec---CCC
Confidence            76554  34568999987754 4444444332  25699999999665555 6788 99999999998888775   346


Q ss_pred             EEEEEEecCCCEEEEEeCC
Q 017642          306 IYSLAFSSNAQWLAVSSDK  324 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~d  324 (368)
                      +.+++|+|||++|+++..+
T Consensus       316 ~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          316 PNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEECTTSCEEEEEEEC
T ss_pred             CCeEEEcCCCCEEEEEEcc
Confidence            8999999999977766655

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=4.2e-21  Score=186.47  Aligned_cols=239  Identities=9%  Similarity=0.008  Sum_probs=168.3

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCce---eEEEEEEeCCeEEEEecCCCCC----CCCCcEE
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQ----YPLNKVM  159 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~d~~----~~~~~i~  159 (368)
                      .+.+++|+|||++++++.|+.|++||+.+++..  ..+. .+..   .+.++.|++++..++.+..+..    ..++.|+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~--~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTST--VLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEE--EEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            466789999999887755888999999877654  3332 3332   3788999999887776654311    1137899


Q ss_pred             EEeCCCCcEEEEEe----cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCe----------------
Q 017642          160 IWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK----------------  217 (368)
Q Consensus       160 vwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v----------------  217 (368)
                      +||+.+++. ..+.    +...+..++|+|||+.++  .++.|++||+.+++..+....+...+                
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999999876 3343    333488999999998888  68899999999887766554433332                


Q ss_pred             --eEEEEecCCCeEEEEeecC-------------------------------CCCeEEEEecCcce-eeeeecc------
Q 017642          218 --GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKR-TKFIMAH------  257 (368)
Q Consensus       218 --~~~~~~~~~~~~~l~~~g~-------------------------------~dg~i~i~~~~~~~-~~~~~~~------  257 (368)
                        ..++|+|||+.++++....                               .+..|++|+..... ...+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence              6799999999765543110                               01267778776654 3445443      


Q ss_pred             CcceEEEEECCCCCEEEEEeCC----CcEEEEEECCCCceeEeeEeccCcccE----EEEEEecCCCEEEE--EeCCC--
Q 017642          258 DSRIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWLAV--SSDKG--  325 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~d----g~~i~iwd~~~~~~~~~~~~~~~~~~v----~~l~~sp~~~~l~s--~s~dg--  325 (368)
                      ...+..++|+|||++|++....    .. |++||+.+++....+... +...+    ..++|+|||+.|+.  ...++  
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            6678999999999988776532    45 999999999877665442 23333    37899999997765  44667  


Q ss_pred             ----eEEEEE
Q 017642          326 ----TVHVFN  331 (368)
Q Consensus       326 ----~i~iwd  331 (368)
                          .|++||
T Consensus       332 ~~~~~l~~~d  341 (723)
T 1xfd_A          332 GKFYHITVSS  341 (723)
T ss_dssp             SCEEEEEEEC
T ss_pred             cceeEEEEEe
Confidence                466676

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=2.1e-19  Score=160.29  Aligned_cols=240  Identities=11%  Similarity=0.110  Sum_probs=162.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEec-CCCcceEEEcccCCceeEEEEEEeCCeE--EEEecC-------------C
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGG-------------P  149 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~-------------~  149 (368)
                      ..+..++|+|||++|++++.+.|.+|+++ +++........ .+. ....+.+++++.  ++++++             .
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~-~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEee-cCC-CCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            35778999999999988884499999997 54433221111 111 133467788877  344443             3


Q ss_pred             CCCCCCCcEEEEeCC-CCcEEEEEe-----cCCceeEEEEeeCccEEE----eCCcEEEEEcC-CCeEE--EEEec--cC
Q 017642          150 DPQYPLNKVMIWDDH-QSRCIGELS-----FRSEVRSVKLRRDRIIVV----LEQKIFVYNFA-DLKLL--HQIET--IA  214 (368)
Q Consensus       150 d~~~~~~~i~vwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~-~~~~~--~~~~~--~~  214 (368)
                      +     +.+.+|++. +++....+.     +...+.+++|+|||++++    .++.|++||+. +++..  ..+..  +.
T Consensus       118 ~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          118 A-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             C-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             C-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence            4     899999987 466554443     456799999999998766    25789999998 67653  23331  24


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecC---ccee---e---eee----ccCc------ceEEEE-ECCCCCEEE
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA---SKRT---K---FIM----AHDS------RIACFA-LTQDGQLLA  274 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~---~~~~---~---~~~----~~~~------~i~~v~-~sp~g~~l~  274 (368)
                      .....++|+|+|+.++++  +..++.|.+|+.+   ++..   .   .+.    +|..      .+..++ |+|||++|+
T Consensus       193 ~~p~~~~~spdg~~l~v~--~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYAL--MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             CCEEEEEECTTSSEEEEE--ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCCEeEECCCCCEEEEE--ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence            567889999999976554  3457889987653   2221   1   121    1222      588999 999999887


Q ss_pred             EEeCCC------cEEEEEECC-CCceeEeeE-eccCcccEEEEEEec---CCCEEEEEeC-CCeEEEEEccCC
Q 017642          275 TSSTKG------TLVRIFNTL-DGTLLQEVR-RGADRAEIYSLAFSS---NAQWLAVSSD-KGTVHVFNLKVN  335 (368)
Q Consensus       275 s~~~dg------~~i~iwd~~-~~~~~~~~~-~~~~~~~v~~l~~sp---~~~~l~s~s~-dg~i~iwd~~~~  335 (368)
                      +++.+.      . |.+|++. +++...... ...+...+..++|+|   ||++|++++. ++.|++|+++..
T Consensus       271 v~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          271 ASSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            766432      7 9999996 566543211 111334567889999   8999999876 489999999765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=8.6e-20  Score=176.80  Aligned_cols=235  Identities=11%  Similarity=0.104  Sum_probs=164.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCCCc--ceEEEccc-------------CCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFER-------------GGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      +..+.|.  |..++++.+++| +||+.+++.  ........             .....+.++.|+++..++++.+    
T Consensus        28 ~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~----  100 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQ----  100 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEET----
T ss_pred             CCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEEC----
Confidence            4446788  666666664558 999988766  33222100             0014588899999966666543    


Q ss_pred             CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCC-----CeEEEEEeccCCC---------
Q 017642          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-----LKLLHQIETIANP---------  216 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~-----~~~~~~~~~~~~~---------  216 (368)
                         +.|++||+.+++......+...+..++|+|||+.++  .++.|++||+.+     ++..+....+...         
T Consensus       101 ---~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A          101 ---GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             ---TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             ---CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence               899999999987766666778899999999999887  799999999988     7765544333332         


Q ss_pred             -----eeEEEEecCCCeEEEEee------------------------------cCCCCeEEEEecCcceeeeee---ccC
Q 017642          217 -----KGLCAVSQGVGSLVLVCP------------------------------GLQKGQVRVEHYASKRTKFIM---AHD  258 (368)
Q Consensus       217 -----v~~~~~~~~~~~~~l~~~------------------------------g~~dg~i~i~~~~~~~~~~~~---~~~  258 (368)
                           +..+.|+|||+.++++..                              ...+..|++|+........+.   .|.
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                 478999999997554420                              013456777887765544433   566


Q ss_pred             cceEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCceeEeeEeccCcc---cEEEEEEec--CCCEEEEEeCCCeEE
Q 017642          259 SRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSS--NAQWLAVSSDKGTVH  328 (368)
Q Consensus       259 ~~i~~v~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~---~v~~l~~sp--~~~~l~s~s~dg~i~  328 (368)
                      ..+.+++|+|||++|++++.++     . |++||+.+++....+....+..   .+.+++|+|  ||++|++++.|+.++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~  336 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH  336 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence            7899999999999999887765     6 9999999984444443221222   246789999  999999999999999


Q ss_pred             EEEcc
Q 017642          329 VFNLK  333 (368)
Q Consensus       329 iwd~~  333 (368)
                      ||+++
T Consensus       337 l~~~~  341 (706)
T 2z3z_A          337 LYLYD  341 (706)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99987

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=9.9e-20  Score=183.62  Aligned_cols=236  Identities=9%  Similarity=0.099  Sum_probs=177.7

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ..|...+.++.|+++ .+++++. ++.++||.++...... ..+. .+. .+....|++++..++.+. +     +.|++
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~-~~~-~~~~~~~SpDG~~la~~~-~-----~~i~~  269 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL-RKHT-SFT-DYYPRHLNTDGRRILFSK-G-----GSIYI  269 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC-EECC-CCC-SSCEEEEEESSSCEEEEE-T-----TEEEE
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc-eEec-CCC-CcceeeEcCCCCEEEEEe-C-----CEEEE
Confidence            678999999999988 5555666 6678999887533322 2232 222 233446777766555543 3     89999


Q ss_pred             EeCCCCcEEEEEec------------CCceeEEEEe-eCccEEE--eCCcEEEEEcCCCeEEEEEeccCC-CeeEEEEec
Q 017642          161 WDDHQSRCIGELSF------------RSEVRSVKLR-RDRIIVV--LEQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQ  224 (368)
Q Consensus       161 wd~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~  224 (368)
                      ||+...+ +..+..            ...+..++|+ |||+.++  .++.|++|++..++... +..+.. .+..++|+ 
T Consensus       270 ~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          270 FNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             ECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-
T ss_pred             ecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-
Confidence            9985443 334432            3369999999 9998777  68999999998876543 555666 78889999 


Q ss_pred             CCCeEEEEeecCCCCeEE-EEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCc
Q 017642          225 GVGSLVLVCPGLQKGQVR-VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR  303 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~-i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~  303 (368)
                      +|+.++++.   .++.+. +|+........+..|...+..++|+|||++|++++.++. |++||+.+++....+..  |.
T Consensus       347 dg~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~  420 (1045)
T 1k32_A          347 TKVAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--RE  420 (1045)
T ss_dssp             SEEEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SS
T ss_pred             CCCeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CC
Confidence            887644432   367787 778777666666678888999999999999999999999 99999999988776655  67


Q ss_pred             ccEEEEEEecCCCEEEEEeCCC----------eEEEEEccCCC
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKG----------TVHVFNLKVNS  336 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg----------~i~iwd~~~~~  336 (368)
                      +.+.+++|+|||++|++++.++          .|++||+.+++
T Consensus       421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            7889999999999998887644          89999998765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=1.2e-19  Score=176.24  Aligned_cols=240  Identities=7%  Similarity=-0.019  Sum_probs=162.4

Q ss_pred             CEEEEEEcCCCCEEEEEeC----------CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .|.+++|||||++|+++.+          +.+.+||+++++........ .+...+..+.|+|++..++.++.      +
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~~------~  134 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE------N  134 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET------T
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEEC------C
Confidence            4899999999999998873          55889999876642111111 23334667889998877776654      7


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCce------------------eEEEEeeCccEEE---eCC--------------------
Q 017642          157 KVMIWDDHQSRCIGELS-FRSEV------------------RSVKLRRDRIIVV---LEQ--------------------  194 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~~~~v------------------~~~~~~~~~~~l~---~d~--------------------  194 (368)
                      .|++||+.+++...... +...+                  .+++|+|||+.++   .++                    
T Consensus       135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (723)
T 1xfd_A          135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (723)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence            89999999988766554 33333                  7899999999887   232                    


Q ss_pred             --------------cEEEEEcCCCeEEEEEecc------CCCeeEEEEecCCCeEEEEee-cCCCCeEEEEecCcceee-
Q 017642          195 --------------KIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKRTK-  252 (368)
Q Consensus       195 --------------~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~-g~~dg~i~i~~~~~~~~~-  252 (368)
                                    .|++||+.+++....+..+      ...+..++|+|||+.++.... +..+..|++|+....... 
T Consensus       215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence                          7999999888765566543      456788999999985433221 123456777877654433 


Q ss_pred             eeec-cCcce----EEEEECCCCCEEEE--EeCCC------cEEEEEE-CCCCc--eeEeeEeccCcccEEE-EEEecCC
Q 017642          253 FIMA-HDSRI----ACFALTQDGQLLAT--SSTKG------TLVRIFN-TLDGT--LLQEVRRGADRAEIYS-LAFSSNA  315 (368)
Q Consensus       253 ~~~~-~~~~i----~~v~~sp~g~~l~s--~~~dg------~~i~iwd-~~~~~--~~~~~~~~~~~~~v~~-l~~sp~~  315 (368)
                      .+.. +...+    ..++|+|||+.|+.  +..++      . |.+|| ...++  +...+..  +...+.. ++|+|||
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg  371 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTT
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCC
Confidence            3333 33433    37899999996664  45566      4 67777 34444  1445543  2234554 6999999


Q ss_pred             CEEEEEeCC---CeEEEEEccCCC
Q 017642          316 QWLAVSSDK---GTVHVFNLKVNS  336 (368)
Q Consensus       316 ~~l~s~s~d---g~i~iwd~~~~~  336 (368)
                      +.|+..+.+   +.++||++....
T Consensus       372 ~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          372 NKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSST
T ss_pred             CEEEEEEcCCCCcceEEEEEeCCC
Confidence            999766554   789999997543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=4.9e-19  Score=161.18  Aligned_cols=239  Identities=14%  Similarity=0.079  Sum_probs=163.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCc--------ceEEEcc----cCCceeEEEEEEeCCeEEEE----ecCC
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--------IFRRDFE----RGGGIGVVEMLFRCNILALV----GGGP  149 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~----s~~~  149 (368)
                      ..++.+++++++.++++++.++++||+......        .......    ..+...+.+++|++++..++    +++.
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence            457889999999999999966799988642110        0011110    13445689999999998888    7887


Q ss_pred             CCCCCCCcEEEEeCCCC--------cE---EEEEe-cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEEecc
Q 017642          150 DPQYPLNKVMIWDDHQS--------RC---IGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETI  213 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~--------~~---~~~~~-~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~~~~  213 (368)
                      |     +.|++||+.++        +.   +..+. |...|.+++|+|+ +.+++   .||+|++||+++++.+.....|
T Consensus       117 d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~  191 (434)
T 2oit_A          117 G-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS  191 (434)
T ss_dssp             E-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred             C-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence            7     99999998654        22   33344 7899999999998 66666   5999999999998777666778


Q ss_pred             CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeecc-------CcceEEEEECCCCCEEEEE-eCCCc----
Q 017642          214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATS-STKGT----  281 (368)
Q Consensus       214 ~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~-------~~~i~~v~~sp~g~~l~s~-~~dg~----  281 (368)
                      ...+.+++|+|+|+.  +++ |+.||.|++|+..+.....+..|       ...|.+++|++++.++++. +.+|.    
T Consensus       192 ~~~v~~v~wspdg~~--las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQ--LAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             GGCEEEEEECTTSSC--EEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CCceeEEEEcCCCCE--EEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            889999999999986  343 66899999999885554444433       3379999999988877543 33321    


Q ss_pred             -EEEEEECCCCc-----eeEeeEec-----cCcccEEEEEEecCCCEEEEEe-CCCeEEEEEc
Q 017642          282 -LVRIFNTLDGT-----LLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNL  332 (368)
Q Consensus       282 -~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~  332 (368)
                       .+++|++.+.+     ....+...     ....+-..+.+-++.+++++++ ..+.|.|+..
T Consensus       269 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          269 PDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             CEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             CceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence             28899998652     11111110     1122223344447777766654 3444665554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=4.2e-17  Score=140.12  Aligned_cols=238  Identities=13%  Similarity=0.204  Sum_probs=173.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc-----cCCceeEEEEEE-eCCeEEEEecCC-CCCCC
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLF-RCNILALVGGGP-DPQYP  154 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~s~~~-d~~~~  154 (368)
                      .+-..+.+++++++|+++++.. ++.|.+|+.+ ++..  ..+.     ..+......+++ .+++.++++... +    
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~----   99 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT----   99 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG----
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC----
Confidence            4556789999999999888776 7789999976 2322  2221     012345678888 466666665532 4    


Q ss_pred             CCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCC
Q 017642          155 LNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVG  227 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~  227 (368)
                       +.|++|| .+++.+..+.  +...+.++++++++++++   .++.|++||. +++.+..+.  .+......++++++++
T Consensus       100 -~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          100 -HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             -CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             -CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence             8999999 6777777775  345789999999998777   3678999996 466666664  2334577899999886


Q ss_pred             eEEEEeecCCCCeEEEEecCcceeeeeecc--CcceEEEEECCCCCEEEEEeCCC-cEEEEEECCCCceeEeeEeccCcc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~--~~~i~~v~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                       ++++  ...++.|++|+..++.+..+..+  ...+..|+++++|+++++...++ . |++||. +++.+..+..+....
T Consensus       177 -l~v~--~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~  251 (286)
T 1q7f_A          177 -IFIS--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHA  251 (286)
T ss_dssp             -EEEE--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCS
T ss_pred             -EEEE--ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCCC
Confidence             3433  44578999988887776666543  35789999999999888887775 8 999994 677777776533333


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      .+.+++++|+|+++++ +.|++|++|++....
T Consensus       252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             cceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            5789999999987777 679999999986543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=4.5e-18  Score=149.64  Aligned_cols=226  Identities=10%  Similarity=0.113  Sum_probs=152.3

Q ss_pred             CEEEEE-e-CCeEEEEEecC-CCcceEEEcccCCceeEEEEEEeCCeEEEEec-CCCCCCCCCcEEEEeCC--CCc--EE
Q 017642           98 GCFAAG-T-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDH--QSR--CI  169 (368)
Q Consensus        98 ~~l~~~-~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~~~~~i~vwd~~--~~~--~~  169 (368)
                      ++++++ . ++.|++|+++. +.......+  .+...+..+.|++++..++.+ ..+     +.|++|++.  +++  .+
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~   77 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFA   77 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeec
Confidence            344444 4 88899999964 222223333  344556678888887644443 333     899999987  554  34


Q ss_pred             EEEecCCceeEEEEeeCccEEE----eCCcEEEEEcC---CCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          170 GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       170 ~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                      ..+.....+..++|+|++.+++    .++.|.+||+.   .++.+..+.. ...+..++|+|+++.++++  +..++.|+
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~~~~v~  154 (343)
T 1ri6_A           78 AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVP--ALKQDRIC  154 (343)
T ss_dssp             EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEE--EGGGTEEE
T ss_pred             cccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEe--cCCCCEEE
Confidence            4555455899999999998765    37889999994   4445555543 3457789999999875543  33688999


Q ss_pred             EEecCc-ceee-----eeec-cCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCC--Cce--eEeeEec----cCcccE
Q 017642          243 VEHYAS-KRTK-----FIMA-HDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD--GTL--LQEVRRG----ADRAEI  306 (368)
Q Consensus       243 i~~~~~-~~~~-----~~~~-~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~--~~~--~~~~~~~----~~~~~v  306 (368)
                      +|+... ..+.     .+.. ....+..++|+|+|++|++++ .++. |++||+..  ++.  ...+...    .....+
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  233 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWA  233 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCc
Confidence            988765 3332     2222 344788999999999776554 7788 99999953  433  2222211    012357


Q ss_pred             EEEEEecCCCEEEEE-eCCCeEEEEEccC
Q 017642          307 YSLAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~-s~dg~i~iwd~~~  334 (368)
                      ..++|+|+|++|+++ ..++.|++||+..
T Consensus       234 ~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          234 ADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            789999999987754 4789999999973

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=7.6e-19  Score=154.22  Aligned_cols=224  Identities=9%  Similarity=-0.000  Sum_probs=160.3

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcceEEEcccCCce-eEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~  174 (368)
                      ++|+++. ++.|++||+.+++......+  .+.. ....+.+++++ .+++++..+     +.|.+||+.+++.+..+..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEc
Confidence            3677777 88899999887665533332  2211 35677888887 445555555     8999999999998888774


Q ss_pred             CC------ceeEEEEeeCccEEE-e--------------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          175 RS------EVRSVKLRRDRIIVV-L--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       175 ~~------~v~~~~~~~~~~~l~-~--------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      ..      .+..++|+|+++.++ .              ++.|++||+.+++.+..+.. ...+..++|+|+++.++++ 
T Consensus        75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-  152 (337)
T 1pby_B           75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL-  152 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred             CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence            33      788999999997666 3              48999999999988877764 4456778999999875543 


Q ss_pred             ecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCCCCEEEEEeCCCc-----------------------EEEEEECC
Q 017642          234 PGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGT-----------------------LVRIFNTL  289 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~-----------------------~i~iwd~~  289 (368)
                          ++.|.+|+.... ....+..+.. ...+.|+|+|++|+..+.++.                       .|.+||+.
T Consensus       153 ----~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  227 (337)
T 1pby_B          153 ----GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             ----SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             ----CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC
Confidence                578999877654 3334443321 112378999987665554332                       16899999


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      +++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++..
T Consensus       228 ~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~  273 (337)
T 1pby_B          228 TGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI  273 (337)
T ss_dssp             TCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE
T ss_pred             CCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc
Confidence            98875 43333355678899999999999888  789999999876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.1e-18  Score=175.95  Aligned_cols=241  Identities=11%  Similarity=0.017  Sum_probs=182.7

Q ss_pred             CCCCEEEEEEc-CCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCce-eEEEEEEeCCeEEEEecCCCCCCCCCcEE-E
Q 017642           84 PPPTLLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVM-I  160 (368)
Q Consensus        84 h~~~v~~~~~s-~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~d~~~~~~~i~-v  160 (368)
                      |...+.+++|+ |||++|+++.++.+.+|++......   .+. .+.. .+..+.|+ ++..++.++.+     +.|. +
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~---~~~-~~~~~~~~~~~~s-dg~~l~~~s~~-----~~l~~~  363 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KVP-EPLRIRYVRRGGD-TKVAFIHGTRE-----GDFLGI  363 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE---ECS-CCSCEEEEEECSS-SEEEEEEEETT-----EEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE---Ecc-CCCcceEEeeeEc-CCCeEEEEECC-----CceEEE
Confidence            34468999999 9999999998888999998754422   233 4444 78888999 88777766655     7888 9


Q ss_pred             EeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec--
Q 017642          161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--  235 (368)
Q Consensus       161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g--  235 (368)
                      ||+.+++......+...+..++|+|||+.++   .++.|++||+.+++....+..+...+..++|+|||+.++.+...  
T Consensus       364 ~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~  443 (1045)
T 1k32_A          364 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH  443 (1045)
T ss_dssp             EETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS
T ss_pred             EECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcc
Confidence            9988776544334778899999999999887   47899999999998887777788888999999999975444311  


Q ss_pred             -----CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-----------------
Q 017642          236 -----LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-----------------  293 (368)
Q Consensus       236 -----~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-----------------  293 (368)
                           ..++.|++|+........+..|...+..++|+|||++|++++.++. .++|+......                 
T Consensus       444 ~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGS  522 (1045)
T ss_dssp             STTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             ccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccccccccCceeEEEEeCCCC
Confidence                 1235899999887777778888888999999999999999998877 77776543221                 


Q ss_pred             --------------------------eEeeEeccCcccEEEEEEecCCCEEEE-------------EeCCCeEEEEEccC
Q 017642          294 --------------------------LQEVRRGADRAEIYSLAFSSNAQWLAV-------------SSDKGTVHVFNLKV  334 (368)
Q Consensus       294 --------------------------~~~~~~~~~~~~v~~l~~sp~~~~l~s-------------~s~dg~i~iwd~~~  334 (368)
                                                +..+..  +.+.+..++++|||+++++             ...+..|++||+.+
T Consensus       523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~  600 (1045)
T 1k32_A          523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  600 (1045)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CCccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCC
Confidence                                      111111  4467889999999987775             12345788888877


Q ss_pred             CCC
Q 017642          335 NSG  337 (368)
Q Consensus       335 ~~~  337 (368)
                      ++.
T Consensus       601 ~~~  603 (1045)
T 1k32_A          601 RKV  603 (1045)
T ss_dssp             CCE
T ss_pred             CcE
Confidence            654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.3e-18  Score=164.81  Aligned_cols=226  Identities=8%  Similarity=0.073  Sum_probs=167.8

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC----CeEEEEEecC--CCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           84 PPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~d----~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      +...+..++|+|| ++++++..    ...+||.++.  .....  .+.......+.++.++++.++++++..      +.
T Consensus        63 ~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~------~~  133 (582)
T 3o4h_A           63 PINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATE------DR  133 (582)
T ss_dssp             CCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCSBEEEEEEECSSCEEEEEECS------SC
T ss_pred             cccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--cccCCCCceeeeeCCCCCeEEEEecCC------CC
Confidence            3368999999999 77766653    3467777755  33332  232233445667888888888888776      45


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eC----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      +.+||+.+++......+..  .+++|+|||++++   .+    +.|++||+.+++.. .+..+...+..++|+|||+.++
T Consensus       134 ~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~  210 (582)
T 3o4h_A          134 VALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTA  210 (582)
T ss_dssp             EEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEE
T ss_pred             ceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEE
Confidence            6699999987766665544  8999999999988   23    67999999888754 5667777889999999999754


Q ss_pred             EEeecCCCC--eEEEEecCcceeeeeeccCcceEEEE--------ECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          231 LVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFA--------LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       231 l~~~g~~dg--~i~i~~~~~~~~~~~~~~~~~i~~v~--------~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                        . +..++  .|++|+..+.....+..|...+..++        |+|||.++++++.++. ++||++  ++.+.   . 
T Consensus       211 --~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~~---~-  280 (582)
T 3o4h_A          211 --G-LETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERVE---A-  280 (582)
T ss_dssp             --E-EECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEEC---C-
T ss_pred             --E-ccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCeec---c-
Confidence              2 44677  78888877655556667777777777        9999999999999999 999999  66553   1 


Q ss_pred             cCcccEEEEEEecCCCEEEEEeCCCe---EEEEEcc
Q 017642          301 ADRAEIYSLAFSSNAQWLAVSSDKGT---VHVFNLK  333 (368)
Q Consensus       301 ~~~~~v~~l~~sp~~~~l~s~s~dg~---i~iwd~~  333 (368)
                       ..+.+.+++|+ +++++++++.+.+   |++||..
T Consensus       281 -~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          281 -PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             -CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             -CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence             34578999999 9999988877644   6666654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=7.5e-20  Score=177.63  Aligned_cols=237  Identities=9%  Similarity=0.001  Sum_probs=161.9

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCce---eEEEEEEeCCeEEEEecCC---------CCCCCCCc
Q 017642           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGP---------DPQYPLNK  157 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~---------d~~~~~~~  157 (368)
                      +++|+|||++++++.|+.|++||+.+++..  ..+. .+..   .+.++.|++++..++.++.         +     +.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~--~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~-----~~   91 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSY--TILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT-----AT   91 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEE--EEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-----EE
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEE--EEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecc-----eE
Confidence            569999998777666888999999877654  3332 2222   2678899999887766543         4     79


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEE-eccCCC-----------------e
Q 017642          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIANP-----------------K  217 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~-~~~~~~-----------------v  217 (368)
                      |++||+.+++.+........+..++|+|||+.++  .++.|++||+.+++..+.. .++...                 .
T Consensus        92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             EEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            9999999987632122346789999999999888  7999999999888765432 122211                 1


Q ss_pred             eEEEEecCCCeEEEEeecC-------------------------------CCCeEEEEecCccee---------eeeecc
Q 017642          218 GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRT---------KFIMAH  257 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~-------------------------------~dg~i~i~~~~~~~~---------~~~~~~  257 (368)
                      ..++|+|||+.++++....                               ....|++|+......         ..+..|
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            4799999999755543110                               011666787766543         123457


Q ss_pred             CcceEEEEECCCCCEEEEEeCC----CcEEEEEE----CCCCceeEeeE---eccCcccEE-----EEEEecCCCEEEE-
Q 017642          258 DSRIACFALTQDGQLLATSSTK----GTLVRIFN----TLDGTLLQEVR---RGADRAEIY-----SLAFSSNAQWLAV-  320 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~d----g~~i~iwd----~~~~~~~~~~~---~~~~~~~v~-----~l~~sp~~~~l~s-  320 (368)
                      ...+..++|+||++++++....    .. |.+||    +.+++....+.   .. |.+.+.     .+.|+|||+.|+. 
T Consensus       252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          252 DYYFSWLTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEES-RTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             CEEEEEEEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEEC-SSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             cceEEEeEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEeccccc-CCceEccccCCccEECCCCCeEEEE
Confidence            8889999999998877764322    24 88899    87777665552   21 455565     7899999996554 


Q ss_pred             -EeCCC--eEEEEEccCCC
Q 017642          321 -SSDKG--TVHVFNLKVNS  336 (368)
Q Consensus       321 -~s~dg--~i~iwd~~~~~  336 (368)
                       ...+|  .|++||+.+++
T Consensus       330 ~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          330 FSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             EECTTSCEEEEEESSCSTT
T ss_pred             EEccCCceEEEEEECCCCc
Confidence             44555  56777776554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=8.7e-19  Score=159.55  Aligned_cols=195  Identities=11%  Similarity=0.119  Sum_probs=140.9

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-----------Cc-----EEEEEecCCceeEEEEeeCccEEE----
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-----------SR-----CIGELSFRSEVRSVKLRRDRIIVV----  191 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-----------~~-----~~~~~~~~~~v~~~~~~~~~~~l~----  191 (368)
                      +..++++++...++.++.+     + +++|+...           ..     ....+.+...|.+++|++++.+++    
T Consensus        39 ~n~lavs~~~~~l~~~~~d-----g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGAS-----G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             CBCEEEETTTTEEEEEETT-----E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             ccEEEEecCCCEEEEECCC-----E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence            3455566655555555554     4 88876421           01     112344667899999999999887    


Q ss_pred             e---CCcEEEEEcCCC--------e---EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeec
Q 017642          192 L---EQKIFVYNFADL--------K---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMA  256 (368)
Q Consensus       192 ~---d~~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~  256 (368)
                      .   |+.|++||++++        +   .+..+.+|...|.+++|+|+...+ +++ ++.||.|++|+.... .......
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-las-~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM-VAV-CLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE-EEE-EETTSCEEEEEESSSEEEEEEEC
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE-EEE-EECCCeEEEEEcCCCcceeeccC
Confidence            2   889999998654        2   234556688999999999984442 333 668999999987654 3344567


Q ss_pred             cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-----CcccEEEEEEecCCCEEEEE-eCCC-----
Q 017642          257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----DRAEIYSLAFSSNAQWLAVS-SDKG-----  325 (368)
Q Consensus       257 ~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~s~-s~dg-----  325 (368)
                      |...|.+++|+|+|++|++|+.||. |++||++ ++....+..+.     |...|.+++|++++.++++. +.||     
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            8899999999999999999999999 9999998 66555554321     23479999999998887654 3443     


Q ss_pred             -eEEEEEccCCC
Q 017642          326 -TVHVFNLKVNS  336 (368)
Q Consensus       326 -~i~iwd~~~~~  336 (368)
                       .+++|++.+.+
T Consensus       269 ~~v~i~~l~~~~  280 (434)
T 2oit_A          269 PDVVMALLPKKE  280 (434)
T ss_dssp             CEEEEEECCCTT
T ss_pred             CceEEEEeccCC
Confidence             38999998654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=7.8e-19  Score=170.89  Aligned_cols=247  Identities=11%  Similarity=0.035  Sum_probs=163.6

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCc-----eeEEEEEEeCCeEEEEecCCCCC-C---CCC
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG-----IGVVEMLFRCNILALVGGGPDPQ-Y---PLN  156 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~d~~-~---~~~  156 (368)
                      ....+++|+|||++|+++ |+.|++||+.+++....  +. .+.     .....+.|+|++..++....+.. +   ..+
T Consensus        17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVF--LE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEE--EC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcEEEEc-CCcEEEEECCCCceEEE--Ee-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            345678999999999887 88999999988775432  32 222     12234778888877666554200 0   014


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEE-eccCC-----------------C
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIAN-----------------P  216 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~-~~~~~-----------------~  216 (368)
                      .+.+||+.+++......+...+...+|+|||+.++  .++.|++||+.+++..+.. .++..                 .
T Consensus        93 ~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            67799999988654333778899999999999888  7999999999887754321 12211                 1


Q ss_pred             eeEEEEecCCCeEEEEee-------------------------------cCCCC--eEEEEecCc---c---eeeeee--
Q 017642          217 KGLCAVSQGVGSLVLVCP-------------------------------GLQKG--QVRVEHYAS---K---RTKFIM--  255 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~-------------------------------g~~dg--~i~i~~~~~---~---~~~~~~--  255 (368)
                      ...+.|+|||+.++++..                               |..+.  .|++|+..+   .   ....+.  
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence            234889999997655421                               01111  456677766   4   333443  


Q ss_pred             ----ccCcceEEEEECCCCCEEEEEeC----CCcEEEEEECCCCc----ee--EeeEeccCcccEE-----EEEEecCCC
Q 017642          256 ----AHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGT----LL--QEVRRGADRAEIY-----SLAFSSNAQ  316 (368)
Q Consensus       256 ----~~~~~i~~v~~sp~g~~l~s~~~----dg~~i~iwd~~~~~----~~--~~~~~~~~~~~v~-----~l~~sp~~~  316 (368)
                          +|...+..++|+|||++++....    +.. |++||+.+++    +.  ..+....+...|.     .+.|+|||+
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence                37778999999999996665432    236 9999999887    22  2221111444443     788999999


Q ss_pred             EEE-EEe-CCC--eEEEEEccCCCC
Q 017642          317 WLA-VSS-DKG--TVHVFNLKVNSG  337 (368)
Q Consensus       317 ~l~-s~s-~dg--~i~iwd~~~~~~  337 (368)
                      .|+ ..+ .+|  .|++||+..++.
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             EEEEEEEcCCCceEEEEEECCCCce
Confidence            877 665 344  588888876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=1.5e-16  Score=139.55  Aligned_cols=240  Identities=10%  Similarity=0.064  Sum_probs=173.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCC-------------------------eEEEEEecCCCcceEEEcccCCceeEEEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDH-------------------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC  139 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (368)
                      -+.+.+|+++++|+++++...+                         .|.+||.++++..  ..+...+-.....+++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEECC
Confidence            4579999999999999887733                         5899987665543  333223334677888998


Q ss_pred             CeEEEEecCCCCCCCCCcEEEEeCCCCc-EEEEEe----------cCCceeEEEEee-CccEEEe----CCcEEEEEcCC
Q 017642          140 NILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----------FRSEVRSVKLRR-DRIIVVL----EQKIFVYNFAD  203 (368)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~vwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~~----d~~i~vwd~~~  203 (368)
                      ++.++++...+     +.|++||..... .+..+.          +-.....+++++ ++.+++.    ++.|++|| .+
T Consensus       101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            88777777665     899999975442 455552          223688999999 7877772    56899999 57


Q ss_pred             CeEEEEEeccC----------CCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeee--ccCcceEEEEECCCC
Q 017642          204 LKLLHQIETIA----------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIM--AHDSRIACFALTQDG  270 (368)
Q Consensus       204 ~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~--~~~~~i~~v~~sp~g  270 (368)
                      ++.+..+....          .....+++++++..++++  ...++.|++|+.. ++.+..+.  .+...+..++|+| +
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~--d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g  251 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA--DRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G  251 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE--ETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE--ECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence            77777764322          236779999996665554  4568899998887 77666663  4566788999999 4


Q ss_pred             CEEEE-------EeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          271 QLLAT-------SSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       271 ~~l~s-------~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..+++       ...+.. |++||+.+++.+..+... .+...+.+|+++|+|.++++...++.|++|+++...
T Consensus       252 ~~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence            33333       333457 999999999988877421 145578999999999888888889999999997643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.79  E-value=1.2e-16  Score=141.22  Aligned_cols=220  Identities=11%  Similarity=0.103  Sum_probs=144.2

Q ss_pred             CCeEEEEEecCCCcceEE-EcccCCceeEEEEEEeCCeEEEEecC--CCCCCCCCcEEEEeCCCCc--EEEEEe-cCCce
Q 017642          105 DHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGGG--PDPQYPLNKVMIWDDHQSR--CIGELS-FRSEV  178 (368)
Q Consensus       105 d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~--~d~~~~~~~i~vwd~~~~~--~~~~~~-~~~~v  178 (368)
                      +++|.+|+++........ ... .+......+++++++.+++++.  .+     +.|++||+.+++  .+..+. +...+
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~l~~~~~~~~~-----~~v~~~~~~~g~~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLL-AATQNPTYLALSAKDCLYSVDKEDDE-----GGIAAWQIDGQTAHKLNTVVAPGTPP   88 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE-EECSCCCCEEECTTCEEEEEEEETTE-----EEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             CCCEEEEEEcCCCCeEEEeeee-eccCCcceEEEccCCeEEEEEecCCC-----ceEEEEEecCCcEEEeeeeecCCCCC
Confidence            456889988764433222 111 2334456688888887444432  24     799999997775  334433 67889


Q ss_pred             eEEEEeeCccEEE----eCCcEEEEEcC-CC--eEEEEEecc---------CCCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          179 RSVKLRRDRIIVV----LEQKIFVYNFA-DL--KLLHQIETI---------ANPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       179 ~~~~~~~~~~~l~----~d~~i~vwd~~-~~--~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                      ..++|+|++++++    .++.|.+||+. ++  +.+..+...         ...+..++|+|+++ +++ + +..++.|+
T Consensus        89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v-~-~~~~~~v~  165 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAV-I-DLGSDKVY  165 (347)
T ss_dssp             SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEE-E-ETTTTEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEE-E-eCCCCEEE
Confidence            9999999998776    36899999995 33  333333221         12367799999998 443 3 45678999


Q ss_pred             EEecC-cceeee---eec-cCcceEEEEECCCCCEEEEE-eCCCcEEEEEECCC--Cce--eEeeEeccC----cccEEE
Q 017642          243 VEHYA-SKRTKF---IMA-HDSRIACFALTQDGQLLATS-STKGTLVRIFNTLD--GTL--LQEVRRGAD----RAEIYS  308 (368)
Q Consensus       243 i~~~~-~~~~~~---~~~-~~~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~--~~~--~~~~~~~~~----~~~v~~  308 (368)
                      +|+.. ...+..   +.. ....+..++|+|||++|+++ ..++. |++|++..  ++.  +..+.....    ...+..
T Consensus       166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  244 (347)
T 3hfq_A          166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA  244 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred             EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence            98876 222221   222 23367889999999966664 55677 99999874  443  222222111    135889


Q ss_pred             EEEecCCCEEE-EEeCCCeEEEEEccC
Q 017642          309 LAFSSNAQWLA-VSSDKGTVHVFNLKV  334 (368)
Q Consensus       309 l~~sp~~~~l~-s~s~dg~i~iwd~~~  334 (368)
                      ++|+|||++|+ +...++.|.+|++..
T Consensus       245 i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          245 IRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            99999999874 555689999999973

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1.1e-17  Score=150.02  Aligned_cols=246  Identities=13%  Similarity=0.001  Sum_probs=160.5

Q ss_pred             cCCCCCEEE-----EEEcCCCCEEEEEeC-Ce---EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC
Q 017642           82 SSPPPTLLH-----ISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ  152 (368)
Q Consensus        82 ~~h~~~v~~-----~~~s~~g~~l~~~~d-~~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  152 (368)
                      +.|......     .+|+|||++|+.+++ ++   |.+||+++++..  .... .+...+....|++++..++....+  
T Consensus        27 t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~-~~~~~~~~~~~spdg~~l~~~~~~--  101 (388)
T 3pe7_A           27 TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTE-GRGDNTFGGFLSPDDDALFYVKDG--  101 (388)
T ss_dssp             SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--ECCC-SSCBCSSSCEECTTSSEEEEEETT--
T ss_pred             cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--Eeee-CCCCCccceEEcCCCCEEEEEeCC--
Confidence            344444444     789999999988873 44   777777654433  2232 343333356789988777766655  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe-cCCceeEEE--EeeCccEEE-------------------------eCCcEEEEEcCCC
Q 017642          153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVK--LRRDRIIVV-------------------------LEQKIFVYNFADL  204 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~--~~~~~~~l~-------------------------~d~~i~vwd~~~~  204 (368)
                         +.|++||+.+++....+. +...+....  +++++..++                         .+..|++||+.++
T Consensus       102 ---~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          102 ---RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ---TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             ---CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence               799999999998877766 444443333  478888876                         1257999999988


Q ss_pred             eEEEEEeccCCCeeEEEEec-CCCeEEEEeecCC---CCeEEEEecCcceeeeeeccC--cceEEEEECCCCCEEEEEeC
Q 017642          205 KLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLATSST  278 (368)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~g~~---dg~i~i~~~~~~~~~~~~~~~--~~i~~v~~sp~g~~l~s~~~  278 (368)
                      +..... .+...+..+.|+| +|+.++++..+..   ...|.+++..+.....+..+.  ..+..++|+|||+.|+..+.
T Consensus       179 ~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          179 ESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEec
Confidence            754443 4566788899999 9987655542211   336666666666666665554  35788999999997765443


Q ss_pred             -C----CcEEEEEECCCCceeEeeEeccCccc---EEEEEEecCCCEEEEE---------eCCCeEEEEEccCCCC
Q 017642          279 -K----GTLVRIFNTLDGTLLQEVRRGADRAE---IYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSG  337 (368)
Q Consensus       279 -d----g~~i~iwd~~~~~~~~~~~~~~~~~~---v~~l~~sp~~~~l~s~---------s~dg~i~iwd~~~~~~  337 (368)
                       +    +. |++||+.+++.........+...   ...+.|+|||+.|+..         ..+..|++||+.+++.
T Consensus       258 ~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          258 LKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             ETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             CCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence             2    24 99999998875432221100000   1123799999988754         4566899999987653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=8.8e-17  Score=144.19  Aligned_cols=244  Identities=12%  Similarity=0.071  Sum_probs=159.3

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEe-------------
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVG-------------  146 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-------------  146 (368)
                      ...|...+..+.|+|||+.|+.+. ++.|++||+.+++........ ........+.+++++..++.             
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech-hhcccccceeECCCCCeeccccccCcccccccc
Confidence            334444555678999999999988 667999999887765443332 22222234455777766653             


Q ss_pred             ---------cCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEee-CccEEE--e-------CCcEEEEEcCCCeEE
Q 017642          147 ---------GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--L-------EQKIFVYNFADLKLL  207 (368)
Q Consensus       147 ---------~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~--~-------d~~i~vwd~~~~~~~  207 (368)
                               ...+     ..|++||+.+++......+...+..++|+| |++.++  .       ...|.++|+..++. 
T Consensus       155 ~~~~~~~~~~~~~-----~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-  228 (388)
T 3pe7_A          155 WKKFHEFYFTKPC-----CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-  228 (388)
T ss_dssp             HHHHHHHGGGCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-
T ss_pred             cchhhhhhccCCc-----ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-
Confidence                     1222     689999999998766666888899999999 998876  2       23788888765543 


Q ss_pred             EEEeccC--CCeeEEEEecCCCeEEEEeecCC--CCeEEEEecCcceeeeeeccCc---c---eEEEEECCCCCEEEEE-
Q 017642          208 HQIETIA--NPKGLCAVSQGVGSLVLVCPGLQ--KGQVRVEHYASKRTKFIMAHDS---R---IACFALTQDGQLLATS-  276 (368)
Q Consensus       208 ~~~~~~~--~~v~~~~~~~~~~~~~l~~~g~~--dg~i~i~~~~~~~~~~~~~~~~---~---i~~v~~sp~g~~l~s~-  276 (368)
                      ..+..+.  ..+....|+|||+.++++.....  +..|++|+........+.....   .   ...+.|+|||+.|+.. 
T Consensus       229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence            3443333  24667899999998655442211  1238888877654433322211   0   1123699999977754 


Q ss_pred             --------eCCCcEEEEEECCCCceeEeeEeccCcc-----------cEEEEEEecCCCEEEEEe-CCCeEEEEEccCC
Q 017642          277 --------STKGTLVRIFNTLDGTLLQEVRRGADRA-----------EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN  335 (368)
Q Consensus       277 --------~~dg~~i~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~  335 (368)
                              ..+.. |++||+.+++.. .+..  +..           .+.+++|+|||+.|+..+ .+|...||.++-.
T Consensus       309 ~~~~~~~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          309 QDDSGYKIENDPF-LYVFNMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             --------CCCCE-EEEEETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             eeccccccCCCCE-EEEEeccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence                    34556 999999887654 4544  333           478899999999887665 5677777766543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=1.7e-16  Score=140.01  Aligned_cols=205  Identities=10%  Similarity=0.058  Sum_probs=142.9

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCC----ceeEEEEEEeCCeEEEEecCCC-----CCC--
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGPD-----PQY--  153 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~d-----~~~--  153 (368)
                      .+..++|+|+|++++++.  ++.|.+||+.+++......+. ..    ...+..+.+++++..++.+..+     ..|  
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS-SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC-CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc-cccccccccccceEECCCCCEEEEEccccccccccccc
Confidence            467899999999765544  667999998876655333331 11    2335677888887655544410     000  


Q ss_pred             CCCcEEEEeCCCCc---EEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccC----------------
Q 017642          154 PLNKVMIWDDHQSR---CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA----------------  214 (368)
Q Consensus       154 ~~~~i~vwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~----------------  214 (368)
                      .++.|.+||+.+++   .+..+.+...+.+++|+|++++++.++.|++||+.+++.+..+....                
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP  202 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred             CCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence            01789999998854   34455566679999999999955577789999999988777664321                


Q ss_pred             ----------------------------------------------------CCeeEEEEec-CCCeEEEEeecCCCCeE
Q 017642          215 ----------------------------------------------------NPKGLCAVSQ-GVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       215 ----------------------------------------------------~~v~~~~~~~-~~~~~~l~~~g~~dg~i  241 (368)
                                                                          .....++++| +++.++++     ++.|
T Consensus       203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v  277 (349)
T 1jmx_B          203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRL  277 (349)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEE
T ss_pred             CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeE
Confidence                                                                0223456678 88764432     6789


Q ss_pred             EEEecCccee-eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          242 RVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       242 ~i~~~~~~~~-~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      .+|+...... ..+. ....+.+++|+|+|++|++++.++. |++||+.+++.+..+..
T Consensus       278 ~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~-v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          278 AKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEEC
T ss_pred             EEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCe-EEEEeccccceeeeeec
Confidence            9988765443 3443 3445789999999998888888888 99999999998888765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=8.2e-17  Score=144.61  Aligned_cols=234  Identities=10%  Similarity=-0.047  Sum_probs=153.7

Q ss_pred             CEEEEEEcCCCCEEEEEeC--C--eEEEEEecCCCcceEEEcccCCceeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           87 TLLHISFNQDHGCFAAGTD--H--GFRIYNCDPFREIFRRDFERGGGIGVV-EMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d--~--~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+..++|+|||++|+...+  +  .|.+|++..++..   .+. .+..... ...|++++..++....+     +.|++|
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~-~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~  107 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---QLT-EGKGDNTFGGFISTDERAFFYVKNE-----LNLMKV  107 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---ECC-CSSCBCTTTCEECTTSSEEEEEETT-----TEEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---Eee-cCCCCccccceECCCCCEEEEEEcC-----CcEEEE
Confidence            3566789999999887762  2  4777887654432   222 2222222 26688888777665555     789999


Q ss_pred             eCCCCcEEEEEe-cCCceeE-------------------EEEeeCccEEE--------eCCcEEEEEcCCCeEEEEEecc
Q 017642          162 DDHQSRCIGELS-FRSEVRS-------------------VKLRRDRIIVV--------LEQKIFVYNFADLKLLHQIETI  213 (368)
Q Consensus       162 d~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~l~--------~d~~i~vwd~~~~~~~~~~~~~  213 (368)
                      |+.+++...... +......                   +.++|++..++        .+..|++||+.+++..... .+
T Consensus       108 d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~  186 (396)
T 3c5m_A          108 DLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD  186 (396)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred             ECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence            999888766655 3332222                   24566665544        1347999999888765544 45


Q ss_pred             CCCeeEEEEec-CCCeEEEEeecCCC----CeEEEEecCcceeeeeecc--CcceEEEEECCCCCEEEEEeCC-----Cc
Q 017642          214 ANPKGLCAVSQ-GVGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTK-----GT  281 (368)
Q Consensus       214 ~~~v~~~~~~~-~~~~~~l~~~g~~d----g~i~i~~~~~~~~~~~~~~--~~~i~~v~~sp~g~~l~s~~~d-----g~  281 (368)
                      ...+..+.|+| +++.++++. ....    ..|.+++..+.....+..+  ...+..++|+|||++|+.++.+     +.
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV  265 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred             CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence            66788899999 777655544 2222    4577777666554444443  2357889999999987776544     45


Q ss_pred             EEEEEECCCCceeEeeEeccCcccEEEEEEec-CCCEEEEEe----------------CCCeEEEEEccCCCC
Q 017642          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSS----------------DKGTVHVFNLKVNSG  337 (368)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s----------------~dg~i~iwd~~~~~~  337 (368)
                       |++||+.+++.......   .. .. +.|+| ||+++++++                .++.|++||+.+++.
T Consensus       266 -l~~~d~~~g~~~~l~~~---~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          266 -IYKANPETLENEEVMVM---PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             -EEEECTTTCCEEEEEEC---CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             -EEEEECCCCCeEEeeeC---CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence             99999988876533222   11 23 89999 999888754                347899999987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=2.2e-15  Score=133.80  Aligned_cols=231  Identities=14%  Similarity=0.094  Sum_probs=144.1

Q ss_pred             CCCEEEEEe-----CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC--CcE
Q 017642           96 DHGCFAAGT-----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRC  168 (368)
Q Consensus        96 ~g~~l~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~--~~~  168 (368)
                      ...++++|+     +++|.+|.++........... .+......+++++++..+++++.+. -.++.|.+|++..  ++.
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-~~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-AEVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-EECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-ccCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcE
Confidence            344555664     456999988654333222211 1334445577888876555444310 0127899998765  433


Q ss_pred             --EEEEe-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEE----Ee--c--------cCCCeeEEEEecCCC
Q 017642          169 --IGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQ----IE--T--------IANPKGLCAVSQGVG  227 (368)
Q Consensus       169 --~~~~~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~----~~--~--------~~~~v~~~~~~~~~~  227 (368)
                        +.... +......+++  ++++++    .++.|.+|++.....+..    +.  +        +...+..++|+|+++
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence              23333 4556777777  666555    378999999975332211    11  1        011236799999999


Q ss_pred             eEEEEeecCCCCeEEEEecCcce-------e-------eeeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKR-------T-------KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGT  292 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~-------~-------~~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~  292 (368)
                      .++++  +..++.|.+|+.....       +       .....+...+..++|+|||++|++++ .++. |.+||+.+++
T Consensus       168 ~l~~~--~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~  244 (361)
T 3scy_A          168 YLLAD--DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGM  244 (361)
T ss_dssp             EEEEE--ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTE
T ss_pred             EEEEE--eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCc
Confidence            75543  4457889998665322       1       11223445678999999999887777 5777 9999998775


Q ss_pred             e--eEeeEec-cCcccEEEEEEecCCCEEEEEeC--CCeEEEEEcc
Q 017642          293 L--LQEVRRG-ADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLK  333 (368)
Q Consensus       293 ~--~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~  333 (368)
                      .  +..+... .+......++|+|||++|+++..  ++.|.+|++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            4  2223221 12235689999999999877665  4899999996

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=1.5e-15  Score=147.10  Aligned_cols=247  Identities=10%  Similarity=0.035  Sum_probs=167.1

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC----
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DH-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----  152 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~----  152 (368)
                      .|...+..++|||||++||.+. ++     .|++||+++++.... .+   ....+..+.|++++..++.+..+..    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE---EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc---cCcccceEEEEeCCCEEEEEEECCccccc
Confidence            4545688999999999998776 22     599999987665422 22   1122456788888765555444311    


Q ss_pred             -------CCCCcEEEEeCCCCcE--EEEEe---cCCceeEEEEeeCccEEE---e-----CCcEEEEEcCC------Ce-
Q 017642          153 -------YPLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVV---L-----EQKIFVYNFAD------LK-  205 (368)
Q Consensus       153 -------~~~~~i~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~---~-----d~~i~vwd~~~------~~-  205 (368)
                             .....|++|++.+++.  ...+.   +...+..+.|+|||++++   .     +..|++||+.+      +. 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                   1123499999988762  22333   345578999999999887   2     46899999976      43 


Q ss_pred             EEEEEeccCCCeeEEEEecCCCeEEEEeecC-CCCeEEEEecCcce---eeeeeccCc--ceEEEEECCCCCEEEEEeCC
Q 017642          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKR---TKFIMAHDS--RIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~-~dg~i~i~~~~~~~---~~~~~~~~~--~i~~v~~sp~g~~l~s~~~d  279 (368)
                      ....+..+...+.. .|+++|+.+++..... ..+.|.+++.....   ...+..|..  .+..++|++++.++++...+
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            34555555555543 5889999877664211 13467777765532   344555543  68889999777888888888


Q ss_pred             Cc-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE-e---CCCeEEEEEccCCC
Q 017642          280 GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-S---DKGTVHVFNLKVNS  336 (368)
Q Consensus       280 g~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s---~dg~i~iwd~~~~~  336 (368)
                      +. .|.+||+.+++.+..+..  +.+.+..+.++|++..|+.. +   ..++|++||+.+++
T Consensus       357 g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            84 166778778887777765  46678899999999766533 2   45789999998876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.71  E-value=9.9e-17  Score=155.68  Aligned_cols=233  Identities=8%  Similarity=0.036  Sum_probs=155.3

Q ss_pred             CEEEEEEcCCCCEEEEEeC----------CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      .|.+++|||||++|+++++          +.|++||+++++......+    ...+..+.|+|++..++.+..      +
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~~------~  130 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVYQ------N  130 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEET------T
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEEC------C
Confidence            4889999999999988764          5699999987654110112    123667889998877776643      8


Q ss_pred             cEEEEeCCCCcEEEEEe--cCCce-----------------eEEEEeeCccEEE---eCC--------------------
Q 017642          157 KVMIWDDHQSRCIGELS--FRSEV-----------------RSVKLRRDRIIVV---LEQ--------------------  194 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~--~~~~v-----------------~~~~~~~~~~~l~---~d~--------------------  194 (368)
                      .|++||+.+++......  +...|                 .+++|+|||+.++   .|.                    
T Consensus       131 ~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          131 NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            99999998887754332  22222                 4899999999888   231                    


Q ss_pred             --------------cEEEEEcCCCeEE--EE------EeccCCCeeEEEEecCCCeEEEEeecCCCC--eEEEEe----c
Q 017642          195 --------------KIFVYNFADLKLL--HQ------IETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEH----Y  246 (368)
Q Consensus       195 --------------~i~vwd~~~~~~~--~~------~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i~i~~----~  246 (368)
                                    .|++||+.+++..  ..      +..+...+..++|+||++ +++......++  .|.+|+    .
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~  289 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDW  289 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSS
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCC
Confidence                          7889999887642  11      224666788999999964 33332222233  355566    4


Q ss_pred             Ccce-eeee----eccCcceE-----EEEECCCCCEEEE--EeCCCc-EEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          247 ASKR-TKFI----MAHDSRIA-----CFALTQDGQLLAT--SSTKGT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       247 ~~~~-~~~~----~~~~~~i~-----~v~~sp~g~~l~s--~~~dg~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      .... ...+    ..|...+.     .+.|+|||+.|+.  ...+|. .|.+||+.+++ ...+..  +...+..+.++ 
T Consensus       290 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-  365 (719)
T 1z68_A          290 QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-  365 (719)
T ss_dssp             SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-
T ss_pred             CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-
Confidence            4433 3333    35666666     8899999995543  445553 17777877766 334543  34567888888 


Q ss_pred             CCCEEEEEeCC-----CeEEEEEccC
Q 017642          314 NAQWLAVSSDK-----GTVHVFNLKV  334 (368)
Q Consensus       314 ~~~~l~s~s~d-----g~i~iwd~~~  334 (368)
                      +++.|+..+.+     +.+++|.+..
T Consensus       366 d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          366 TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            88877766654     8899999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=5.5e-15  Score=131.57  Aligned_cols=226  Identities=11%  Similarity=0.021  Sum_probs=147.6

Q ss_pred             EEEEEe--C-CeEEEEEecCCCcce--EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC-CCcEEEEE
Q 017642           99 CFAAGT--D-HGFRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGEL  172 (368)
Q Consensus        99 ~l~~~~--d-~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~-~~~~~~~~  172 (368)
                      +|++|+  . ++|.+|+++.....+  ...........+..+++++++..+++++.      +.|.+|++. +++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEee
Confidence            345555  2 468888876433322  11211012234567888998876666654      489999987 77765544


Q ss_pred             ec--CCceeEEEEeeCccE--EE----------------eCCcEEEEEcC-CCeEEEEEec----cCCCeeEEEEecCCC
Q 017642          173 SF--RSEVRSVKLRRDRII--VV----------------LEQKIFVYNFA-DLKLLHQIET----IANPKGLCAVSQGVG  227 (368)
Q Consensus       173 ~~--~~~v~~~~~~~~~~~--l~----------------~d~~i~vwd~~-~~~~~~~~~~----~~~~v~~~~~~~~~~  227 (368)
                      .+  .+.+..++|+|+|+.  ++                .++.+.+|++. +++....+..    +...+..++|+|+|+
T Consensus        78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            42  244667899999984  32                25789999997 4665544432    345678899999998


Q ss_pred             eEEEEeecCCCCeEEEEecC-ccee---eeee--ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECC--CCceeE---
Q 017642          228 SLVLVCPGLQKGQVRVEHYA-SKRT---KFIM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGTLLQ---  295 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~-~~~~---~~~~--~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~--~~~~~~---  295 (368)
                      .++++  ...++.|++|+.. ...+   ..+.  .|...+..++|+|||++|++++. ++. |.+|++.  +++...   
T Consensus       158 ~l~~~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          158 YLYSA--DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             EEEEE--ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEE
T ss_pred             EEEEE--cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccc
Confidence            75443  3346789998775 3322   2232  24567899999999998888775 567 9999865  565431   


Q ss_pred             eeEecc-----Ccc------cEEEEE-EecCCCEEEEEeCC-C-----eEEEEEcc
Q 017642          296 EVRRGA-----DRA------EIYSLA-FSSNAQWLAVSSDK-G-----TVHVFNLK  333 (368)
Q Consensus       296 ~~~~~~-----~~~------~v~~l~-~sp~~~~l~s~s~d-g-----~i~iwd~~  333 (368)
                      .+....     +..      .+..++ |+|||++|++++.+ +     .|.+|++.
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            222110     111      488999 99999988776532 2     89999996

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=1e-15  Score=147.06  Aligned_cols=243  Identities=12%  Similarity=-0.016  Sum_probs=161.4

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEE--e-CCeEEEEEecCCCcceEEEcccCCceeEE---------EEEEe--CCeEE
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAG--T-DHGFRIYNCDPFREIFRRDFERGGGIGVV---------EMLFR--CNILA  143 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~--~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~  143 (368)
                      ......|...|..++|++++.+++..  . ++...||........  +.+. .+...+.         .+.++  |++..
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~   92 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE--ESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGP   92 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE--EESS-CTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc--ceeC-CCCccccccccccCCccceeeeecCCCe
Confidence            33455688899999999887777776  3 556899987443332  3333 3333333         34444  66544


Q ss_pred             -EE-ecCCCCCCCCCcEEEEeCC--C-CcEEEEEe-----cCCceeEEEEeeCccEEE---eC----------CcEEEEE
Q 017642          144 -LV-GGGPDPQYPLNKVMIWDDH--Q-SRCIGELS-----FRSEVRSVKLRRDRIIVV---LE----------QKIFVYN  200 (368)
Q Consensus       144 -~~-s~~~d~~~~~~~i~vwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~---~d----------~~i~vwd  200 (368)
                       ++ +...+     ..|++|++.  . ++......     +...+..++|+|||+.++   .+          ..|++||
T Consensus        93 ~la~~~~~~-----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~  167 (662)
T 3azo_A           93 LLVFTHFGD-----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP  167 (662)
T ss_dssp             EEEEEBTTT-----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred             EEEEEECCC-----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence             33 33333     778888876  3 44333222     356788999999999887   34          4899999


Q ss_pred             cCC------CeEEEEEe-ccCCCeeEEEEecCCCeEEEEeecC-----CCCeEEEEecC-cc---eeeee-eccCcceEE
Q 017642          201 FAD------LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYA-SK---RTKFI-MAHDSRIAC  263 (368)
Q Consensus       201 ~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~-----~dg~i~i~~~~-~~---~~~~~-~~~~~~i~~  263 (368)
                      +.+      ++. ..+. .+...+..++|+|||+.++++....     ....|++|+.. ..   ....+ ..|...+..
T Consensus       168 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          168 LDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             TTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             CCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            987      544 4444 4456677889999999765543111     11478887776 23   34444 445788999


Q ss_pred             EEECCCCCEEEEEeCCC--cEEEEEECCCCceeEeeEeccCccc--------EEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          264 FALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAE--------IYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       264 v~~sp~g~~l~s~~~dg--~~i~iwd~~~~~~~~~~~~~~~~~~--------v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ++|+|||+++++++.++  . |.+||+.+++.......  +...        +..++|+++++++++++. +.++||.++
T Consensus       247 ~~~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             eEECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            99999999888888888  5 66677666765543332  2111        567899999999999988 999999554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=4.6e-14  Score=121.75  Aligned_cols=231  Identities=8%  Similarity=-0.030  Sum_probs=161.0

Q ss_pred             CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           83 SPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      .+.....+++|+|+|+ +++++. +++|.+|+.+..  .  ..+. .+...+..+.+++++.++++...+     +.|.+
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~-~~~~~~~~l~~~~dg~l~v~~~~~-----~~i~~   94 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEM-HPSHHQNGHCLNKQGHLIACSHGL-----RRLER   94 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEE-SSCSSEEEEEECTTCCEEEEETTT-----TEEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEE-CCCCCcceeeECCCCcEEEEecCC-----CeEEE
Confidence            4556778999999998 666666 778999998765  2  2332 445567889999988777776654     78999


Q ss_pred             EeCCCCcEEEEEe-c----CCceeEEEEeeCccEEEeC--------------------CcEEEEEcCCCeEEEEEeccCC
Q 017642          161 WDDHQSRCIGELS-F----RSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIETIAN  215 (368)
Q Consensus       161 wd~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~d--------------------~~i~vwd~~~~~~~~~~~~~~~  215 (368)
                      ||..+++...... .    ...+..++++++|++++.|                    +.|..++.. ++. ..+..+..
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~  172 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV  172 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC
Confidence            9988887654432 1    2356789999999988842                    355555544 443 34444555


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cce---eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      ....++|+++++.+ ++  ...++.|.+|+..  +..   ...+..+...+.+++++++|+++++.  ++. |.+||.. 
T Consensus       173 ~~~gi~~s~dg~~l-v~--~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-  245 (296)
T 3e5z_A          173 KPNGLAFLPSGNLL-VS--DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-  245 (296)
T ss_dssp             SEEEEEECTTSCEE-EE--ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-
T ss_pred             CCccEEECCCCCEE-EE--eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-
Confidence            66789999999864 32  4567888887764  222   22233345567789999999976666  677 9999975 


Q ss_pred             CceeEeeEeccCcccEEEEEE-ecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~-sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ++.+..+..  +.. +.+++| +++++.|++++.++ |.-++.++.+
T Consensus       246 g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          246 GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            787777776  444 899999 58999888888764 4445554443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=2.3e-15  Score=133.67  Aligned_cols=233  Identities=12%  Similarity=0.089  Sum_probs=154.0

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccC---CceeEEEEEEeCCeEEEEecC--CCCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG--PDPQY  153 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~--~d~~~  153 (368)
                      .++|+|||++|+++.           ++.|.+||..+.+......+...   +......+.+++++.+++.+.  .+   
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~---  130 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA---  130 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS---
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC---
Confidence            889999999998875           34599999887665533332100   122344677888876665543  23   


Q ss_pred             CCCcEEEEeCCCCcEEEE-EecCCceeEEEEeeCc--cEEE--eCCcEEEEEcCC-CeEEEEE------eccCCCeeEEE
Q 017642          154 PLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-LKLLHQI------ETIANPKGLCA  221 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~--~d~~i~vwd~~~-~~~~~~~------~~~~~~v~~~~  221 (368)
                        +.|.+||+.+++.+.. +...+. ..+.+.|++  .+++  .||.+.+|++.. ++.....      .....++ .+.
T Consensus       131 --~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~  206 (361)
T 2oiz_A          131 --TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA  206 (361)
T ss_dssp             --EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC
T ss_pred             --CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE
Confidence              7899999999998888 664332 335667765  2233  588999999865 5544221      1222222 234


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecCcceeee---eec------cC----cceEEEEECCCCCEEEEEeC----------
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMA------HD----SRIACFALTQDGQLLATSST----------  278 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~---~~~------~~----~~i~~v~~sp~g~~l~s~~~----------  278 (368)
                      +.+++..++++.   .++.+.+++........   +..      +.    .....++|+|+++.++++..          
T Consensus       207 ~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          207 PALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             CEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             ecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence            467776655432   57888887665432211   110      00    11123789999887776543          


Q ss_pred             -CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC--CCC
Q 017642          279 -KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN--SGS  338 (368)
Q Consensus       279 -dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~  338 (368)
                       .+. |.+||+.+++.+..+..  +.  +.+++|+|||++|++++. +.|.+||..++  +..
T Consensus       284 ~~~~-v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~  340 (361)
T 2oiz_A          284 PAAE-IWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL  340 (361)
T ss_dssp             CCSE-EEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred             CCce-EEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence             346 99999999999999987  33  899999999999998887 99999999998  544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=1.6e-14  Score=127.41  Aligned_cols=224  Identities=8%  Similarity=0.029  Sum_probs=146.9

Q ss_pred             CCEEEEEEcCCCCEEEEEe----------CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           86 PTLLHISFNQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      ..+..+++  ||++++...          +..|.+|+++.++..   .+     ..+..+.|+|++..++....+..-..
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l-----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI-----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE-----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec-----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            45777888  999887642          334888888765432   22     33567788888765554432100001


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e-C---------------------------CcEEEEEcCCCe
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-E---------------------------QKIFVYNFADLK  205 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~-d---------------------------~~i~vwd~~~~~  205 (368)
                      ..|.+||+.+++......+.. +..++|+||++.++  . +                           ..|++||+.+++
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            358899998887766666555 99999999998777  2 2                           469999999888


Q ss_pred             EEEEEeccCCCeeEEEEecCCCeEEEEeecCCC----C-eEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC-
Q 017642          206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----G-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-  279 (368)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d----g-~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d-  279 (368)
                      .+..+.. . .+..+.|+|+|  ++++.....+    . ...||..+......+..+ ..+..+  +|||++|+.++.+ 
T Consensus       164 ~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~  236 (347)
T 2gop_A          164 VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCS
T ss_pred             EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccc
Confidence            7455544 3 77889999998  3333321111    2 334433224444455555 555554  9999988877644 


Q ss_pred             -------CcEEEEEECCCCceeEeeEeccCcccEEE-EEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          280 -------GTLVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       280 -------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                             .. |.+||  +++.......  +...+.. +.|+ |+ ++++++.++.++|| +.++
T Consensus       237 ~~~~~~~~~-l~~~d--~~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          237 KKYMSEHNK-LYIYD--GKEVMGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             SSCCCSSCE-EEEEC--SSCEEESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             cCCccccce-EEEEC--CCceEecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence                   35 88888  5554433332  4567886 9999 88 88899999999999 8843

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=2.2e-14  Score=126.49  Aligned_cols=227  Identities=12%  Similarity=0.098  Sum_probs=146.9

Q ss_pred             CCEEEEEEcCCCCEEEEEe-C---Ce--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCC--------
Q 017642           86 PTLLHISFNQDHGCFAAGT-D---HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP--------  151 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d---~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--------  151 (368)
                      ..+..++|+|||++|+... +   +.  |.+|+++.++..  ...  .... +..+.|++++..++....+.        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~--~l~--~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK--KIL--EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE--EEE--EESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE--EEE--cCCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence            4678899999999998876 3   33  666776654433  222  1223 78889998876554432110        


Q ss_pred             -----------CC---CCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-e--C------C-cEEEEEcCCCeEE
Q 017642          152 -----------QY---PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--E------Q-KIFVYNFADLKLL  207 (368)
Q Consensus       152 -----------~~---~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~--d------~-~i~vwd~~~~~~~  207 (368)
                                 .|   ....|++||+.+++.+..+... .+..+.|+||| +++ .  +      . ...||.+.+++..
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  211 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE  211 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE
Confidence                       00   0157999999988874555433 88999999999 555 2  2      2 3344444455543


Q ss_pred             EEEeccCCCeeEEEEecCCCeEEEEeecC-----CCCeEEEEecCcceeeeeeccCcceEE-EEECCCCCEEEEEeCCCc
Q 017642          208 HQIETIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYASKRTKFIMAHDSRIAC-FALTQDGQLLATSSTKGT  281 (368)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~~l~~~g~-----~dg~i~i~~~~~~~~~~~~~~~~~i~~-v~~sp~g~~l~s~~~dg~  281 (368)
                       .+..+ ..+..  ++|+|+.++++....     ....|.+++ .++.......+...+.. +.|+ +| ++++++.++.
T Consensus       212 -~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          212 -KMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             -EEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             -EeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence             33333 44443  499999865543211     124677777 55444444566777886 9999 88 8999999998


Q ss_pred             EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeE-EEEEcc
Q 017642          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV-HVFNLK  333 (368)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i-~iwd~~  333 (368)
                       ++|| +.+++.. .+..  +.+.|.+++|++  .++++++.++.. .||.++
T Consensus       285 -~~l~-~~~g~~~-~~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          285 -VNLY-IWDGEIK-PIAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -EEEE-EESSSEE-EEEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             -EEEE-EcCCceE-EEec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence             9999 8766654 3433  456899999999  677777766654 777775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=3.8e-14  Score=127.11  Aligned_cols=229  Identities=10%  Similarity=0.007  Sum_probs=145.2

Q ss_pred             EEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEE---E----------------EEeCCeEEEEec--
Q 017642           90 HISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE---M----------------LFRCNILALVGG--  147 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~s~--  147 (368)
                      .+.|+|||++|+.+. ++.|++|++.+++.......   +......   +                .+++++..++..  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTV---DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEec---ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            368999999998887 66799999887654433222   1111111   1                122222221111  


Q ss_pred             ---CCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEee-CccEEE--eC-------CcEEEEEcCCCeEEEEEecc-
Q 017642          148 ---GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LE-------QKIFVYNFADLKLLHQIETI-  213 (368)
Q Consensus       148 ---~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~--~d-------~~i~vwd~~~~~~~~~~~~~-  213 (368)
                         ..+     ..|++||+.+++......+...+..+.|+| ++..++  .+       ..|.+||+..++.. .+..+ 
T Consensus       162 ~~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~  235 (396)
T 3c5m_A          162 YHTNPT-----CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHA  235 (396)
T ss_dssp             HHTCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCC
T ss_pred             ccCCCc-----ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccC
Confidence               222     689999999988776666788899999999 787555  21       47999998765433 33222 


Q ss_pred             -CCCeeEEEEecCCCeEEEEeecCCC--CeEEEEecCcceeeeeeccCcceEEEEECC-CCCEEEEEe------------
Q 017642          214 -ANPKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSS------------  277 (368)
Q Consensus       214 -~~~v~~~~~~~~~~~~~l~~~g~~d--g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~------------  277 (368)
                       ...+..++|+|+|+.++++......  +.|++|+........+..... .. +.|+| ||++|++++            
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~  313 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADS  313 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC---------
T ss_pred             CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccc
Confidence             2246778999999986655321112  448888876554444432222 33 88999 999888754            


Q ss_pred             ----CCCcEEEEEECCCCceeEeeEeccCcc-----------cEEEEEEecCCCEEEEEeC-CCeEEEEEcc
Q 017642          278 ----TKGTLVRIFNTLDGTLLQEVRRGADRA-----------EIYSLAFSSNAQWLAVSSD-KGTVHVFNLK  333 (368)
Q Consensus       278 ----~dg~~i~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~  333 (368)
                          .++. |++||+.+++.. .+..  +..           .+..++|+|||+.|+.++. ++...||.+.
T Consensus       314 ~~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          314 YNIENDPF-LYVLNTKAKSAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             -CCCCCCE-EEEEETTTTBCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccCCCCc-EEEEecccCceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence                2356 999999887754 4443  222           2567899999998887764 5555555554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=2.4e-14  Score=121.63  Aligned_cols=236  Identities=8%  Similarity=-0.046  Sum_probs=159.2

Q ss_pred             CEEEEEEcCCCCEEE-EEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           87 TLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...+++++++|++++ +.. ++.|.+|+.......   .+...+......+++++++.++++.. +     +.|.+||..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAG   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCC
Confidence            678999999999776 434 677999986543321   11112334456778888776666654 4     899999976


Q ss_pred             CCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642          165 QSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG  239 (368)
Q Consensus       165 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg  239 (368)
                      .... ..+.  ....+.++++++++.+++   .++.|.+|+..+................+++.++++ ++++.  ..++
T Consensus        96 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~  171 (270)
T 1rwi_B           96 SNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNN  171 (270)
T ss_dssp             CSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEE--GGGT
T ss_pred             CceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEE--CCCC
Confidence            6543 3333  336789999999998776   367899998655443322222233567799999886 44432  3467


Q ss_pred             eEEEEecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE
Q 017642          240 QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       240 ~i~i~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  318 (368)
                      .|.+++..+...... ..+...+.+|+++++|.++++...++. |.+||........ +... +...+.+++++++|+++
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~-~~~~-~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTV-LPFT-GLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEE-CCCC-SCSCEEEEEECTTCCEE
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCccee-eccC-CCCCceeEEECCCCCEE
Confidence            888877766544332 233366899999999987777777888 9999986654332 2211 23468999999999988


Q ss_pred             EEEeCCCeEEEEEccCCCCC
Q 017642          319 AVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       319 ~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ++...++.|++|++...+..
T Consensus       249 v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             EEEGGGTEEEEECCCGGGSC
T ss_pred             EEECCCCEEEEEcCCCcccc
Confidence            88889999999999876654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=5.3e-15  Score=143.91  Aligned_cols=192  Identities=11%  Similarity=0.118  Sum_probs=139.0

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCC-----ceeEEEEeeCccEEE--eC----------
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS-----EVRSVKLRRDRIIVV--LE----------  193 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~l~--~d----------  193 (368)
                      ...+.|++++.+++++  |     +.|++||+.++++...+. +..     ....+.|+|||+.++  .+          
T Consensus        19 ~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            4578899999888886  5     999999999999877776 332     224488999999888  22          


Q ss_pred             CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee--ccCcce----------
Q 017642          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI----------  261 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i----------  261 (368)
                      +.+++||+.+++... +..+...+...+|+|||+.++++    .++.|++|+..+.....+.  ++...+          
T Consensus        92 ~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            678899999987653 55566788999999999985543    3789999887654444332  232222          


Q ss_pred             -------EEEEECCCCCEEEEEeCCC------------------------------------cEEEEEECCC---Cc--e
Q 017642          262 -------ACFALTQDGQLLATSSTKG------------------------------------TLVRIFNTLD---GT--L  293 (368)
Q Consensus       262 -------~~v~~sp~g~~l~s~~~dg------------------------------------~~i~iwd~~~---~~--~  293 (368)
                             ..+.|||||++||.++.|.                                    . |++||+.+   ++  .
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCCC
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcce
Confidence                   3589999999999875321                                    4 88899988   73  2


Q ss_pred             eEeeEec----cCcccEEEEEEecCCCEEEEEeC----CCeEEEEEccCCC
Q 017642          294 LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSD----KGTVHVFNLKVNS  336 (368)
Q Consensus       294 ~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~----dg~i~iwd~~~~~  336 (368)
                      ...+...    .+...+..++|+|||+.++....    +..|++||+.+++
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            2233321    15567999999999997665532    3479999999886

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.4e-14  Score=139.23  Aligned_cols=236  Identities=11%  Similarity=0.010  Sum_probs=149.2

Q ss_pred             EEEEc--CCCCE-EEEEeCCeEEEEEecCC----CcceEEEcccC-----CceeEEEEEEeCCeEEEEecCCCCC-----
Q 017642           90 HISFN--QDHGC-FAAGTDHGFRIYNCDPF----REIFRRDFERG-----GGIGVVEMLFRCNILALVGGGPDPQ-----  152 (368)
Q Consensus        90 ~~~~s--~~g~~-l~~~~d~~i~iw~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~d~~-----  152 (368)
                      ...|+  |||+. |+.+.+....||.++..    ...  ..+. .     +...+..+.|++++..++..+.+..     
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~--~~l~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP--RPLT-PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC--EECS-CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC--Eecc-CCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            45555  99998 88777544444444432    222  2332 2     5667888999998876665543200     


Q ss_pred             CCCCcEEEEeCCC------CcEEEEE-ecCCceeEEEEeeCccEEE---eC--------CcEEEEEcC-CC---eEEEEE
Q 017642          153 YPLNKVMIWDDHQ------SRCIGEL-SFRSEVRSVKLRRDRIIVV---LE--------QKIFVYNFA-DL---KLLHQI  210 (368)
Q Consensus       153 ~~~~~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~l~---~d--------~~i~vwd~~-~~---~~~~~~  210 (368)
                      .....|++||+.+      ++..... .+...+..++|+|||+.++   .+        ..|++||+. ++   +.....
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             CceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            0014799999988      6655444 4566788899999999887   23        379999998 57   444444


Q ss_pred             eccCCCeeEEEEecCCCeEEEEeecCCCCe--EEEEecCcceeeeeeccC-cc--------eEEEEECCCCCEEEEEeCC
Q 017642          211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHD-SR--------IACFALTQDGQLLATSSTK  279 (368)
Q Consensus       211 ~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~--i~i~~~~~~~~~~~~~~~-~~--------i~~v~~sp~g~~l~s~~~d  279 (368)
                      ..+...+..+.|+|||+ ++++  +..++.  |.+++........+..+. ..        +..++|+++++++++++. 
T Consensus       238 ~~~~~~~~~~~~spdg~-l~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-  313 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGS-LIVA--TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-  313 (662)
T ss_dssp             EETTBCEEEEEECTTSC-EEEE--ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred             CCCCceEcceEECCCCe-EEEE--ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence            44567888999999998 4433  346774  444554344333333322 21        567899999999999998 


Q ss_pred             CcEEEEE--ECCCCceeEeeEeccCcccEEEE-EEecCCCEEEEEeCCCe--EEEEEccCCC
Q 017642          280 GTLVRIF--NTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGT--VHVFNLKVNS  336 (368)
Q Consensus       280 g~~i~iw--d~~~~~~~~~~~~~~~~~~v~~l-~~sp~~~~l~s~s~dg~--i~iwd~~~~~  336 (368)
                      +. ++||  |+.+++ +..+..  +...+..+ +++.+.-++++++.+..  |++||+.+++
T Consensus       314 ~~-~~l~~~d~~~~~-~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          314 GA-AVLGILDPESGE-LVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SS-CEEEEEETTTTE-EEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             Cc-cEEEEEECCCCc-EEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88 8999  555555 556655  45567766 44433334445555554  5555655554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=4.8e-13  Score=117.26  Aligned_cols=242  Identities=9%  Similarity=0.006  Sum_probs=159.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+...+.+++|+++|++++++. +++|.+||.++++....  .. .+...+..+.+++++.++++...+. ...+.|.+|
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~-~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~  117 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FV-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAA  117 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EE-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--ee-CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEEE
Confidence            4556789999999999877777 67799999876554321  21 3445688899998877666544210 001479999


Q ss_pred             eCCCCcEEEEEe---cCCceeEEEEeeCccEEEeC---------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeE
Q 017642          162 DDHQSRCIGELS---FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       162 d~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  229 (368)
                      |..+++....+.   ....+.++++++++.+++.+         +.|..||..+++... +.........++|+++++.+
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVL  196 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEE
Confidence            988877654433   34578999999999887721         356666655544433 22233456789999999876


Q ss_pred             EEEeecCCCCeEEEEecC--cceeee--------eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          230 VLVCPGLQKGQVRVEHYA--SKRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~--~~~~~~--------~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +++.  ..++.|.+|+..  +.....        +..+ ..+..++++++|+++++...++. |.+||. +++.+..+..
T Consensus       197 ~v~~--~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~  271 (333)
T 2dg1_A          197 WVTE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILI  271 (333)
T ss_dssp             EEEE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEEC
T ss_pred             EEEe--CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEc
Confidence            6543  346788887763  222221        1122 36788999999998888777888 999997 5777766654


Q ss_pred             ccC----cccEEEEEEecCCCEEEEEeCCC----eEEEEEccC
Q 017642          300 GAD----RAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKV  334 (368)
Q Consensus       300 ~~~----~~~v~~l~~sp~~~~l~s~s~dg----~i~iwd~~~  334 (368)
                      ...    ...+.+++|++|++.|+.++.++    .-.||.++.
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            211    11588999999987776655442    244555543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=7.3e-15  Score=141.90  Aligned_cols=245  Identities=9%  Similarity=-0.049  Sum_probs=158.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC----
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----  152 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~----  152 (368)
                      .|...+..++|||||++||.+.      +..|++||+++++......+.   ......+.|++++..++....|..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCCc
Confidence            4556789999999999998543      235999999887653111221   111246788888776666554410    


Q ss_pred             ----CCCCcEEEEeCCCCcE--EEEEe---cCCceeEEEEeeCccEEE---eCC----cEEEEEcCCCeEEEEEeccCCC
Q 017642          153 ----YPLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVV---LEQ----KIFVYNFADLKLLHQIETIANP  216 (368)
Q Consensus       153 ----~~~~~i~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~---~d~----~i~vwd~~~~~~~~~~~~~~~~  216 (368)
                          .....|++|++.+++.  ...+.   +...+..+.|+|||++++   .++    .|++||..+++. ..+..+...
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~  273 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA  273 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc
Confidence                0113499999988762  23333   345788999999999887   344    677777655543 344444445


Q ss_pred             eeEEEEecCCCeEEEEeec-CCCCeEEEEecCcce---eeeeecc--CcceEEEEECCCCCEEEEEeCCCcEEEEEECC-
Q 017642          217 KGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKR---TKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTL-  289 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~~~---~~~~~~~--~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~-  289 (368)
                      +....+ ++++ +++.+.. ..++.|.+|+.....   ...+..+  ...+..++|+ ++.++++...|+. .+||.+. 
T Consensus       274 ~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~  349 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATL  349 (695)
T ss_dssp             CEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEET
T ss_pred             eEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeC
Confidence            555555 6777 5554321 135778887765433   2344333  4568888888 6778888899988 8887654 


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEEEE----eCCCeEEEEEccCCC
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNS  336 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~----s~dg~i~iwd~~~~~  336 (368)
                      +++.+..+... ..+.+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       350 ~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          350 KGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            46655555542 25678888999999876633    235789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=3.3e-13  Score=118.13  Aligned_cols=235  Identities=10%  Similarity=0.034  Sum_probs=158.5

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      ....+.+. +++++++.. ++.|.+||..+++...  .+.  .......+++++++.++++...+     +.|.+||..+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--~i~--~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~t  114 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--RIT--GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPKT  114 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--EEE--CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETTT
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--EcC--CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECCC
Confidence            45677774 344444444 6779999988776653  332  23445667776666666665344     8999999999


Q ss_pred             CcEEEEEecCC------ceeEEEEeeCccEEE--e--CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          166 SRCIGELSFRS------EVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       166 ~~~~~~~~~~~------~v~~~~~~~~~~~l~--~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      ++....+....      ....+++ .++++++  .  ++.|.+||+++++.+..+.... ....++++++|+ +++++.+
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~-l~v~~~~  191 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNK-MWTITDG  191 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSE-EEEEBCC
T ss_pred             CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCC-EEEEECC
Confidence            99888887444      6677888 4555544  2  6789999999999888876543 345688899886 4444422


Q ss_pred             CC--------CCeEEEEecCc-ceeeeeecc-CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          236 LQ--------KGQVRVEHYAS-KRTKFIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       236 ~~--------dg~i~i~~~~~-~~~~~~~~~-~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      ..        .+.|.+++... +....+... ......++|+|++++|+++..  . |.+||..+++.............
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~~  268 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDTK  268 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSSC
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCCc
Confidence            21        26788866654 444344322 236799999999998887765  6 99999988876421111101346


Q ss_pred             EEEEEEec-CCCEEEEE----eCCCeEEEEEccCCCCC
Q 017642          306 IYSLAFSS-NAQWLAVS----SDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       306 v~~l~~sp-~~~~l~s~----s~dg~i~iwd~~~~~~~  338 (368)
                      ...++++| ++.++++.    ..++.|.+||.+ ++..
T Consensus       269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            88999999 55666665    568899999987 6543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=4.4e-13  Score=114.19  Aligned_cols=211  Identities=12%  Similarity=0.037  Sum_probs=155.5

Q ss_pred             CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (368)
Q Consensus        96 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~  174 (368)
                      .+++|++++ ++.|.+||.++++.......  .....+.++.+.+++.++++..       +.|..||. +++.+..+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--EKGWECNSVAATKAGEILFSYS-------KGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC--CTTCCCCEEEECTTSCEEEECB-------SEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--CccCCCcCeEECCCCCEEEeCC-------CCEEEECC-CCCEEEEEcC
Confidence            457788887 77899999877777655443  2213566777888888888542       78999998 8999999883


Q ss_pred             --CCceeEEEEeeCccEEEe----CCcEEEEEcCCCeEEEEEeccC------CCeeEEEEecCCCeEEEEeecCCCCeEE
Q 017642          175 --RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGLQKGQVR  242 (368)
Q Consensus       175 --~~~v~~~~~~~~~~~l~~----d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~l~~~g~~dg~i~  242 (368)
                        ...+.++.+.++|.+++.    ++.|..+|. +|+.+..+....      .....+++.++|+.  +++ ...++.|.
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~-~~~~~~v~  149 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVP-LFATSEVR  149 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEE-ETTTTEEE
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEE-ecCCCEEE
Confidence              357889999999999882    456666674 788777765221      23345677888874  333 45789999


Q ss_pred             EEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc----CcccEEEEEEecCCCEE
Q 017642          243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA----DRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       243 i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l  318 (368)
                      .++..++.+..+... ..+.++.+.++|++++++..++. |..+|..+|+.+.++....    .-..+..+...++|.++
T Consensus       150 ~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~  227 (276)
T 3no2_A          150 EIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY  227 (276)
T ss_dssp             EECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred             EECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence            988888887777654 34566788899999999888888 9999999999998887421    11237888889999988


Q ss_pred             EEEe
Q 017642          319 AVSS  322 (368)
Q Consensus       319 ~s~s  322 (368)
                      ++..
T Consensus       228 v~~~  231 (276)
T 3no2_A          228 ICNW  231 (276)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8773

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=1.1e-12  Score=114.94  Aligned_cols=217  Identities=9%  Similarity=0.038  Sum_probs=155.0

Q ss_pred             CCeEEEEEecCCCcceEEEcc---c--CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCcee
Q 017642          105 DHGFRIYNCDPFREIFRRDFE---R--GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR  179 (368)
Q Consensus       105 d~~i~iw~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~  179 (368)
                      +++|.+||.++++..  ..+.   .  ........+.+..+.++++....      +.|.+||..+++.+.++.......
T Consensus        16 ~~~l~~~d~~t~~~~--~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~------~~v~viD~~t~~~~~~i~~~~~p~   87 (328)
T 3dsm_A           16 NATLSYYDPATCEVE--NEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNS------HVIFAIDINTFKEVGRITGFTSPR   87 (328)
T ss_dssp             CBEEEEEETTTTEEE--CSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGG------TEEEEEETTTCCEEEEEECCSSEE
T ss_pred             CceEEEEECCCCEEh--hhhHhhhcCcccCccceEEEEECCEEEEEEcCC------CEEEEEECcccEEEEEcCCCCCCc
Confidence            566999998765533  2221   0  11223456677777777776543      899999999999999988777899


Q ss_pred             EEEEeeCccEEE-e--CCcEEEEEcCCCeEEEEEeccC-----CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ce
Q 017642          180 SVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR  250 (368)
Q Consensus       180 ~~~~~~~~~~l~-~--d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~  250 (368)
                      .+++++++++.+ .  ++.|.+||..+++....+....     .....+++  +++.++++. -..++.|.+++... +.
T Consensus        88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-WSYQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-CTTCCEEEEEETTTTEE
T ss_pred             EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-CCCCCEEEEEECCCCeE
Confidence            999999987666 3  6899999999999887776443     03345666  556655543 22477888866554 44


Q ss_pred             eeeeeccCcceEEEEECCCCCEEEEEeCC----------CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEE
Q 017642          251 TKFIMAHDSRIACFALTQDGQLLATSSTK----------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       251 ~~~~~~~~~~i~~v~~sp~g~~l~s~~~d----------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                      ...+.. ......++++++|++++++..+          +. |.++|..+++....+... .......++|+|+++.|++
T Consensus       165 ~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          165 VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred             EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEE
Confidence            444543 2345788999999977776654          67 999999999887776542 1236889999999999888


Q ss_pred             EeCCCeEEEEEccCCCC
Q 017642          321 SSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       321 ~s~dg~i~iwd~~~~~~  337 (368)
                      +..  .|.+||+.+++.
T Consensus       242 ~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          242 INN--DIWRMPVEADRV  256 (328)
T ss_dssp             ESS--SEEEEETTCSSC
T ss_pred             Ecc--EEEEEECCCCce
Confidence            754  899999987764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=3.4e-12  Score=110.72  Aligned_cols=235  Identities=10%  Similarity=0.049  Sum_probs=159.2

Q ss_pred             CCEEEEEEcCCCCEEEE-------Ee-CCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCC-eEEEEecCCCCCCC
Q 017642           86 PTLLHISFNQDHGCFAA-------GT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN-ILALVGGGPDPQYP  154 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~-------~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~  154 (368)
                      ....+++|+++|+++++       +. +++|.+|+..+++.... ...  ..+...+..+.++++ +.++++...     
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-----   91 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGCQCDRDANQLFVADMR-----   91 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-EecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence            35678999999998887       34 77899999765543211 110  013345778889888 765555443     


Q ss_pred             CCcEEEEeCCCCcEEEE-Ee-----cCCceeEEEEeeCccEEEe---C---------------CcEEEEEcCCCeEEEEE
Q 017642          155 LNKVMIWDDHQSRCIGE-LS-----FRSEVRSVKLRRDRIIVVL---E---------------QKIFVYNFADLKLLHQI  210 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~l~~---d---------------~~i~vwd~~~~~~~~~~  210 (368)
                       +.|.+||.. ++.... ..     ....+.+++++++|.+++.   +               +.|..||.. ++.....
T Consensus        92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence             579999988 765433 22     1235889999999987772   2               457777765 5544333


Q ss_pred             eccCCCeeEEEEe----cCCCeEEEEeecCCCCeEEEEecC--cc-----eeeeeeccC-cceEEEEECCCCCEEEEEeC
Q 017642          211 ETIANPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYA--SK-----RTKFIMAHD-SRIACFALTQDGQLLATSST  278 (368)
Q Consensus       211 ~~~~~~v~~~~~~----~~~~~~~l~~~g~~dg~i~i~~~~--~~-----~~~~~~~~~-~~i~~v~~sp~g~~l~s~~~  278 (368)
                       ........++++    ++++.++++  ...++.|.+|+..  +.     ....+..+. ..+..++++++|+++++...
T Consensus       169 -~~~~~~~~i~~~~~~d~dg~~l~v~--~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          169 -TAFQFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             -EEESSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             -cCCCCcceEEEecccCCCCCEEEEE--ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence             233345678899    888765554  3356788886643  22     122233333 56789999999998888777


Q ss_pred             CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEE-EEeCCCeEEEEEccCC
Q 017642          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKGTVHVFNLKVN  335 (368)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~  335 (368)
                      ++. |.+||..+++.+..+..  +...+.+++|+++|+.|+ +...++.|..|++...
T Consensus       246 ~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          246 SSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            888 99999887877766665  446799999999999555 4456688999998753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=2.2e-13  Score=119.44  Aligned_cols=235  Identities=14%  Similarity=0.092  Sum_probs=156.7

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ..|.++.|++++..++... ++.++.|.-   +..  ..+. .+......+.|++++.+++++..+     +.|.+||..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~   74 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPW--LEIS-KKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPE   74 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEE--EEEE-SSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTT
T ss_pred             cccceeeecCCccceeEEeecccCccccc---cee--EEEe-ccCccccCcEECCCCCEEEEECCC-----CEEEEEeCC
Confidence            3467788888887665544 777888831   111  2232 444556788888888877766655     899999998


Q ss_pred             CCcEEEEEe-cCCceeEEEEeeCccEEE-e--C----CcEEEEEcCCCeEEEEEe--ccCCCeeEEEEecCCCeEEEEee
Q 017642          165 QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--E----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--d----~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      +++...... +...+.++++++++++++ .  +    +.|.+||.++++....+.  .....+..++++++++. ++...
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~  153 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF-YFTDF  153 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE-EEEEC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE-EEEec
Confidence            887665553 667899999999998777 2  2    489999998776543332  23346788999999863 33321


Q ss_pred             cC----CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEE-EEeCCCcEEEEEECCC-CceeEeeE-----eccCc
Q 017642          235 GL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLD-GTLLQEVR-----RGADR  303 (368)
Q Consensus       235 g~----~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd~~~-~~~~~~~~-----~~~~~  303 (368)
                      ..    ..+.|..++..+.....+..+...+..++|+|+|++|+ +.+.++. |.+||+.+ ++.+..+.     .....
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCC
Confidence            10    12445555554444444444445678999999998654 4455677 99999864 44332211     10011


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ..+..++++++|+++++...++.|.+||.+
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            367889999999988887788999999974

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=3.3e-13  Score=114.96  Aligned_cols=184  Identities=19%  Similarity=0.142  Sum_probs=143.0

Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cC-CceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccC-CC
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR-SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIA-NP  216 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~-~~  216 (368)
                      +..+++++.+     +.|.+||.++|+.+.++. +. ..+.++.+.|+|++++ .++.|+.||. +++.+..+..+. ..
T Consensus         5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            3445555655     999999998999999998 33 4789999999999888 6788999998 899999987643 46


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      +..+.+.++|+.++. . +..++.+..++.+++.+..+..      +......+++.++|++|++...++. |..||.. 
T Consensus        79 ~~~~~~~~dG~~lv~-~-~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-  154 (276)
T 3no2_A           79 MQTARILPDGNALVA-W-CGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-  154 (276)
T ss_dssp             EEEEEECTTSCEEEE-E-ESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-
T ss_pred             ccccEECCCCCEEEE-e-cCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-
Confidence            777889999985332 2 2125666667777776665542      2234556678999999999999999 9999987 


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |+.+.++...   ..+.++.+.++|+++++++.++.|..+|.++++.
T Consensus       155 G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          155 GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            9999888762   3466788889999999888888899999887765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=2.9e-13  Score=118.59  Aligned_cols=206  Identities=12%  Similarity=0.102  Sum_probs=145.7

Q ss_pred             eeEEEEEEeCCeEEEEecCCCCCC-------------------CCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCcc
Q 017642          130 IGVVEMLFRCNILALVGGGPDPQY-------------------PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI  188 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~d~~~-------------------~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~  188 (368)
                      ..+..+++++++.++++...+..+                   .++.|.+||..+++.+..+.  +-.....++++++|.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            457788888888777766553110                   11479999998999877765  335789999999998


Q ss_pred             EEE---eCCcEEEEEcCCCe-EEEEEe---------ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee
Q 017642          189 IVV---LEQKIFVYNFADLK-LLHQIE---------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (368)
Q Consensus       189 ~l~---~d~~i~vwd~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~  255 (368)
                      +++   .++.|++||..... .+..+.         .+......+++++++..++++- +..++.|++|+.++..+..+.
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d-~~~~~~I~~~~~~g~~~~~~~  182 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD-GYCNSRIVQFSPSGKFVTQWG  182 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE-CSSCCEEEEECTTSCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe-CCCCCeEEEEcCCCCEEEEec
Confidence            777   36799999975432 455552         2233567899999444444432 225788999888887776664


Q ss_pred             cc----------CcceEEEEECCC-CCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE---
Q 017642          256 AH----------DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS---  321 (368)
Q Consensus       256 ~~----------~~~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~---  321 (368)
                      ..          -.....|+++|+ +.++++...++. |++||..+++.+..+....+...+.+++|+| +..+++.   
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            32          234889999998 777777777888 9999998899988886544556788999999 4333333   


Q ss_pred             ----eCCCeEEEEEccCCCCC
Q 017642          322 ----SDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       322 ----s~dg~i~iwd~~~~~~~  338 (368)
                          ..+..|++|++.+++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEE
T ss_pred             EeccCCCcEEEEEEcCCCeEE
Confidence                34458999999887654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=1.2e-13  Score=134.47  Aligned_cols=245  Identities=10%  Similarity=0.024  Sum_probs=155.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeC--C----eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC---
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTD--H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY---  153 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d--~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~---  153 (368)
                      .|...+..++|||||++||.+.+  +    .|++||+++++.... .+   +...+..+.|+++ ..++.+..+...   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~---~~~~~~~~~wspD-~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL---KWVKFSGLAWLGN-DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE---EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC---CCceeccEEEECC-CEEEEEEecCccccc
Confidence            34446889999999999988762  2    399999987765321 11   2222246778887 544443332110   


Q ss_pred             ------CCCcEEEEeCCCCcE--EEEEe---cCCceeEEEEeeCccEEE---eC-----CcEEEEEcCCC--eEEEEEec
Q 017642          154 ------PLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVV---LE-----QKIFVYNFADL--KLLHQIET  212 (368)
Q Consensus       154 ------~~~~i~vwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~l~---~d-----~~i~vwd~~~~--~~~~~~~~  212 (368)
                            ....|++|++.++..  ...+.   +...+..+.|+|||++++   .+     ..|++||+.++  ++...+..
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence                  024599999987752  33333   223588999999998877   23     38999999877  31445544


Q ss_pred             cCCCeeEEEEecCCCeEEEEeec-CCCCeEEEEecCc--ceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          213 IANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYAS--KRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       213 ~~~~v~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~--~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      +...+... +.++++.+++.+.. ..++.|.+++...  ..... +..+...+..+.|+ ++.++++...|+. .+||.+
T Consensus       315 ~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~  391 (741)
T 1yr2_A          315 DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAF  391 (741)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEE
Confidence            44444444 45899887766421 1245677777655  23333 34455567778887 5667888888887 777755


Q ss_pred             C-CCceeEeeEeccCcccEEEEEEecCCCEEEEE----eCCCeEEEEEccCCC
Q 017642          289 L-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNS  336 (368)
Q Consensus       289 ~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~----s~dg~i~iwd~~~~~  336 (368)
                      . +++....+... +.+.+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       392 ~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          392 DLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4 46656555532 35678899999998865522    235789999998765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=1.8e-11  Score=105.10  Aligned_cols=232  Identities=11%  Similarity=0.005  Sum_probs=159.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      +...+.++++.++|+++++.. ++.|.+|+.+ .. .....+. .....+..+.+++++.++++...+     +.|..||
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~   84 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLP-TPDAKVMCLTISSDGEVWFTENAA-----NKIGRIT   84 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCC-cccCceeeEEECCCCCEEEeCCCC-----CeEEEEC
Confidence            446799999999999877766 6779999976 33 2222221 344567888898887777766544     7899999


Q ss_pred             CCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeec
Q 017642          163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       163 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      .. ++. ..+.   ....+..+++.+++.+++   .++.|.+||. +++..... ......+..+++.+++. ++++  .
T Consensus        85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~--~  158 (299)
T 2z2n_A           85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFT--E  158 (299)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEE--E
T ss_pred             CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEE--e
Confidence            76 432 3333   345789999999988777   2578999998 55543322 22344577888988885 3433  3


Q ss_pred             CCCCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      ..++.|..++.+++.... +..+...+..++++++|+++++...++. |.+||. +++.. .+....+...+.+++++++
T Consensus       159 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          159 NQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEECST
T ss_pred             CCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEECCC
Confidence            345778776664433322 2334456889999999997777666777 999998 66643 3332223457899999999


Q ss_pred             CCEEEEEeCCCeEEEEEc
Q 017642          315 AQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~  332 (368)
                      |+++++...++.|.+||.
T Consensus       236 g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TCEEEEETTTTEEEEEET
T ss_pred             CCEEEeccCCceEEEECC
Confidence            997776667788999997

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.57  E-value=6.5e-12  Score=108.30  Aligned_cols=220  Identities=10%  Similarity=-0.005  Sum_probs=148.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ..-..+..|++++..|...+  .+.|..|+.++....   .+  .....+..+.+++++.++++..       +.|.+||
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~--~~~~~~~~i~~~~dG~l~v~~~-------~~l~~~d   79 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RV--TMDAPVSSVALRQSGGYVATIG-------TKFCALN   79 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EE--ECSSCEEEEEEBTTSSEEEEET-------TEEEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EE--eCCCceEEEEECCCCCEEEEEC-------CeEEEEE
Confidence            34556789999766554444  667999998765432   22  2234577888888887666653       6899999


Q ss_pred             CCCCcEEEEEec-----CCceeEEEEeeCccEEEeC------------CcEEEEEcC-CCeEEEEEeccCCCeeEEEEec
Q 017642          163 DHQSRCIGELSF-----RSEVRSVKLRRDRIIVVLE------------QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       163 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~d------------~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~  224 (368)
                      ..+++.......     ...+..++++++|++++.+            ....||.+. .++... +.........++|++
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSL  158 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECT
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcC
Confidence            988765443332     2347889999999977721            234555554 244333 222333456799999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecC---cc-----eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEe
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYA---SK-----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~---~~-----~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      +++.++++-  +.++.|.+++.+   +.     ....+..+...+..++++++|++.++...++. |.+||..+++.+..
T Consensus       159 dg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          159 DHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQT  235 (297)
T ss_dssp             TSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEE
T ss_pred             CCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEE
Confidence            999766553  456788886542   21     11223334456889999999998887777788 99999988999888


Q ss_pred             eEeccCcccEEEEEEe-cCCCEEEEEe
Q 017642          297 VRRGADRAEIYSLAFS-SNAQWLAVSS  322 (368)
Q Consensus       297 ~~~~~~~~~v~~l~~s-p~~~~l~s~s  322 (368)
                      +..  ....+++++|. ||++.|+.++
T Consensus       236 i~~--p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          236 VKL--PVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEC--SSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEC--CCCCceEEEEeCCCCCEEEEEc
Confidence            876  44579999998 8888766554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=4.3e-12  Score=118.55  Aligned_cols=242  Identities=12%  Similarity=0.020  Sum_probs=161.1

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEec--CCCcceEEEcccCCceeEEEEEEe----CCeEEE-EecCCCCCCCCCcE
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFR----CNILAL-VGGGPDPQYPLNKV  158 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~s~~~d~~~~~~~i  158 (368)
                      .+..+.|+|||+++++++ ++.|.+||+.  +.+..  ..+. . ......+.++    +++..+ ++...+     +.|
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~-~-G~~P~~ia~s~~~~pDGk~l~v~n~~~-----~~v  268 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIK-I-GSEARSIETSKMEGWEDKYAIAGAYWP-----PQY  268 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEE-C-CSEEEEEEECCSTTCTTTEEEEEEEET-----TEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEe-c-CCCCceeEEccccCCCCCEEEEEEccC-----CeE
Confidence            567899999999998888 7789999985  44433  4443 2 2345678888    466443 343333     889


Q ss_pred             EEEeCCCCcEEEEEecC--------------------------------------------------------CceeEEE
Q 017642          159 MIWDDHQSRCIGELSFR--------------------------------------------------------SEVRSVK  182 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~~~--------------------------------------------------------~~v~~~~  182 (368)
                      .++|..+.+.+..+...                                                        ....++.
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~  348 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG  348 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCce
Confidence            99998888777665410                                                        1123567


Q ss_pred             EeeCccEEE----eCCcEEEEEcCCCeEEEEEec-cCCCe--eEEE-EecCCCeEEEEeecCCCCeEEEEecC-------
Q 017642          183 LRRDRIIVV----LEQKIFVYNFADLKLLHQIET-IANPK--GLCA-VSQGVGSLVLVCPGLQKGQVRVEHYA-------  247 (368)
Q Consensus       183 ~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~-~~~~v--~~~~-~~~~~~~~~l~~~g~~dg~i~i~~~~-------  247 (368)
                      |++++++++    .++.|.++|+.+++.+..+.. ...+-  .... ++|++..+++ ++...++.|.+++..       
T Consensus       349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~-t~~~g~~~Vsvid~~~~~~~~~  427 (567)
T 1qks_A          349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA-TSHMGDDSVALIGTDPEGHPDN  427 (567)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE-EEBSSSSEEEEEECCTTTCTTT
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEE-eCCCCCCeEEEecCCCCCCccc
Confidence            899998876    468999999999998877754 22221  1223 5777665443 323346889886554       


Q ss_pred             -cceeeeeeccCcceEEEEECCCCCEEEEEeC-------CCcEEEEEECCCC-----cee-EeeEe------ccCcccEE
Q 017642          248 -SKRTKFIMAHDSRIACFALTQDGQLLATSST-------KGTLVRIFNTLDG-----TLL-QEVRR------GADRAEIY  307 (368)
Q Consensus       248 -~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-------dg~~i~iwd~~~~-----~~~-~~~~~------~~~~~~v~  307 (368)
                       .+.++.+......-..|..+|++++|.+...       .+. |.|+|+.+.     ... ..+..      ......+.
T Consensus       428 ~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~-v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  506 (567)
T 1qks_A          428 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS-VAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV  506 (567)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC-EEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred             cCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCce-EEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence             3455666654444355778999998888663       347 999999876     211 22221      00134689


Q ss_pred             EEEEecCCCEEEEEe-----CCCeEEEEEccCCCCCC
Q 017642          308 SLAFSSNAQWLAVSS-----DKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s-----~dg~i~iwd~~~~~~~~  339 (368)
                      .+.|+++|+.+..+.     .++.|.|+|.++.+...
T Consensus       507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  543 (567)
T 1qks_A          507 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  543 (567)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             eeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence            999999999877653     37899999999887543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.56  E-value=2.4e-12  Score=110.23  Aligned_cols=194  Identities=12%  Similarity=0.130  Sum_probs=143.1

Q ss_pred             CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec-------CCceeEEEEe-eCccEEE-e---CCc
Q 017642          128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLR-RDRIIVV-L---EQK  195 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~~-~~~~~l~-~---d~~  195 (368)
                      +-.....+++++++.++++...+     +.|.+||.. ++.+..+..       ...+..+++. +++.+++ .   ++.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             ccCCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            33456788888887777775555     899999976 666666642       2468899994 7777766 2   689


Q ss_pred             EEEEEcCCCeEEEEEec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee--ccCcceEEEEECCCCCE
Q 017642          196 IFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQL  272 (368)
Q Consensus       196 i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~v~~sp~g~~  272 (368)
                      |++|| .+++.+..+.. +......+++.++++ ++++  ...++.|.+|+.+++.+..+.  .+...+..|+++++|++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~--~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVV--ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEE--ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEE--ECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence            99999 67777776643 334577899999986 3433  345788999887777666554  34456899999999998


Q ss_pred             EEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC-eEEEEEcc
Q 017642          273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLK  333 (368)
Q Consensus       273 l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~iwd~~  333 (368)
                      +++...++. |++||. +++.+..+....+...+..|+++++|+++++...++ .|++||.+
T Consensus       178 ~v~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          178 FISDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEEEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             EEEECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            888777888 999996 566666665321235689999999999888887775 99999953

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=4.7e-12  Score=114.11  Aligned_cols=236  Identities=10%  Similarity=0.089  Sum_probs=156.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      -.....|+|+++|+++++.. ++.|++||.+.......  .. ..... . +++++++..++.+..+   ....|.+|+.
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~~-~~~~~-~-ia~~~~g~~l~~~d~~---~~~~I~~~d~  201 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--HP-GFKGG-K-PAVTKDKQRVYSIGWE---GTHTVYVYMK  201 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--EE-TCCBC-B-CEECTTSSEEEEEBSS---TTCEEEEEEG
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--ec-cCCCC-c-eeEecCCCcEEEEecC---CCceEEEEEc
Confidence            34688999999999777666 56799999876544322  21 22222 2 6777776544444332   0027999998


Q ss_pred             CCCcEEEEE----e-cCCceeEEEEee-CccEEE--eCCcEEEEEcCCCeEEEE----EeccCCCe--eEEEEecCCCeE
Q 017642          164 HQSRCIGEL----S-FRSEVRSVKLRR-DRIIVV--LEQKIFVYNFADLKLLHQ----IETIANPK--GLCAVSQGVGSL  229 (368)
Q Consensus       164 ~~~~~~~~~----~-~~~~v~~~~~~~-~~~~l~--~d~~i~vwd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~  229 (368)
                      ..+.....+    . ....+.+++++| ++.+++  .++.|+.||..++.....    ..+.....  ..++|++++..+
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            766554444    2 446788999999 666666  457899999987653322    11122222  289999977766


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeeeccC---------------cceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCce
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIMAHD---------------SRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL  293 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------------~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~  293 (368)
                      +++  ...++.|+.++.++. +..+.++.               .....++++++|+++++-. .++. |+.||+.+++.
T Consensus       282 yv~--d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v  357 (409)
T 3hrp_A          282 YMS--DQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYV  357 (409)
T ss_dssp             EEE--ETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEE
T ss_pred             EEE--eCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEE
Confidence            654  345778888877765 33333322               3478999999999777776 7777 99999877764


Q ss_pred             eEeeEecc-------------CcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          294 LQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       294 ~~~~~~~~-------------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      . .+.+..             .-.....|+++++|.++++-..++.|+.++++
T Consensus       358 ~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          358 S-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             E-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             E-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            3 444310             01358899999998888888888899988763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=6.5e-12  Score=117.39  Aligned_cols=227  Identities=13%  Similarity=0.104  Sum_probs=157.8

Q ss_pred             CCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC--CCcEEEE
Q 017642           95 QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGE  171 (368)
Q Consensus        95 ~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~--~~~~~~~  171 (368)
                      +.+.++++.. ++.|.++|..+.+...  .+.  .......+.+++++.+++.++.+     +.|.+||+.  +++.+.+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~--~i~--~g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKT--VLD--TGYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAE  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEE--EEE--CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEE--EEe--CCCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEE
Confidence            3334445544 6779999988776653  332  22234478899988776666666     899999996  8888888


Q ss_pred             EecCCceeEEEEe----eCccEEE----eCCcEEEEEcCCCeEEEEEeccC-----------CCeeEEEEecCCCeEEEE
Q 017642          172 LSFRSEVRSVKLR----RDRIIVV----LEQKIFVYNFADLKLLHQIETIA-----------NPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       172 ~~~~~~v~~~~~~----~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~l~  232 (368)
                      +........++|+    |||++++    .++.|.++|..+.+.+..+....           ..+..+..++++..+++.
T Consensus       236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            8866678899999    6998877    57999999999999888775321           145677788887764444


Q ss_pred             eecCCCCeEEEEecCcc-e--eeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEe-c--cCccc
Q 017642          233 CPGLQKGQVRVEHYASK-R--TKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRR-G--ADRAE  305 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~-~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~-~--~~~~~  305 (368)
                      .  ..+|.|.+.+.... .  +..+ ........+.|+|+|+++++++. ++. |.++|+.+++.+..+.. +  .|.+.
T Consensus       316 ~--~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~  391 (567)
T 1qks_A          316 V--KETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGR  391 (567)
T ss_dssp             E--TTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred             e--cCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCcc
Confidence            3  46788888655432 1  1222 23345678899999998776664 566 99999999998877765 3  23322


Q ss_pred             EEEEEEecCCCEE-EEEe-CCCeEEEEEccCC
Q 017642          306 IYSLAFSSNAQWL-AVSS-DKGTVHVFNLKVN  335 (368)
Q Consensus       306 v~~l~~sp~~~~l-~s~s-~dg~i~iwd~~~~  335 (368)
                      -..+ ++|++..+ ++.. .+++|.++|..+.
T Consensus       392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          392 GANF-VHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             CEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ceee-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence            2222 57875544 4443 4689999999873

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=2.4e-12  Score=124.65  Aligned_cols=240  Identities=8%  Similarity=-0.029  Sum_probs=151.7

Q ss_pred             CCCCEEEEEe-CCe---EEEEEecCCCcceEEE-----cccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           95 QDHGCFAAGT-DHG---FRIYNCDPFREIFRRD-----FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        95 ~~g~~l~~~~-d~~---i~iw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      |+|++++... +.+   -.+|..+.........     +...+...+..+.|+|++..++.+..+.......|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888877655 322   2456554322211111     112344567788999998776643322000012899999999


Q ss_pred             CcEEEEEecCCceeEEEEeeCccEEE---eCCc----------------EEEEEcCCCeE--EEEEec--cCCCeeEEEE
Q 017642          166 SRCIGELSFRSEVRSVKLRRDRIIVV---LEQK----------------IFVYNFADLKL--LHQIET--IANPKGLCAV  222 (368)
Q Consensus       166 ~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~----------------i~vwd~~~~~~--~~~~~~--~~~~v~~~~~  222 (368)
                      ++.+........+..++|+|||+.++   .++.                |++|++.+++.  ...+..  +...+..+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            98776443333477899999998877   3433                99999987652  222232  3344678999


Q ss_pred             ecCCCeEEEEeecCC--CCeEEEEecCc------c--eeeeeeccCcceEEEEECCCCCEEEEEeC----CCcEEEEEEC
Q 017642          223 SQGVGSLVLVCPGLQ--KGQVRVEHYAS------K--RTKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNT  288 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~--dg~i~i~~~~~------~--~~~~~~~~~~~i~~v~~sp~g~~l~s~~~----dg~~i~iwd~  288 (368)
                      +|||+.+++......  +..|++++...      .  ....+..+...+.. .|+++|+.|+..+.    ++. |.+||+
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence            999998666542122  56788877654      2  45566666666655 48889987766554    235 999999


Q ss_pred             CCCc--eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe--EEEEEccCCC
Q 017642          289 LDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT--VHVFNLKVNS  336 (368)
Q Consensus       289 ~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~--i~iwd~~~~~  336 (368)
                      .+++  ....+..+.....+..++|++++.++++...|+.  |++|++.+++
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence            8764  2344544212236888999988888888888885  5566765554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=1.2e-12  Score=126.48  Aligned_cols=231  Identities=9%  Similarity=-0.009  Sum_probs=147.2

Q ss_pred             CCCCEEEEEe-CCe---EEEEEecCCCcceEEEcc-----cCCceeEEEEEEeCCeEEEE-----ecCCCCCCCCCcEEE
Q 017642           95 QDHGCFAAGT-DHG---FRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVMI  160 (368)
Q Consensus        95 ~~g~~l~~~~-d~~---i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----s~~~d~~~~~~~i~v  160 (368)
                      |+|++++... +++   -.||............+.     .++...+..+.|+|++..++     +++.+     ..|++
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~v  151 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLHV  151 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEEE
Confidence            7888887666 332   455655432222222221     13445688899999988877     45444     78999


Q ss_pred             EeCCCCcEE-EEEecCCceeEEEEeeCccEEE---eCCc-------------EEEEEcCCCe----EEEEEeccCCCeeE
Q 017642          161 WDDHQSRCI-GELSFRSEVRSVKLRRDRIIVV---LEQK-------------IFVYNFADLK----LLHQIETIANPKGL  219 (368)
Q Consensus       161 wd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~---~d~~-------------i~vwd~~~~~----~~~~~~~~~~~v~~  219 (368)
                      ||+.+++.+ ...........++|+|||+.++   .|..             |++|++.+++    ++.....+...+..
T Consensus       152 ~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          152 IDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQ  231 (695)
T ss_dssp             EETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEE
T ss_pred             EECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEE
Confidence            999999864 2111112226899999998887   3444             9999998775    22222234456778


Q ss_pred             EEEecCCCeEEEEeecC-CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe---CCCcEEEEEECCCCce--
Q 017642          220 CAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTL--  293 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~-~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~---~dg~~i~iwd~~~~~~--  293 (368)
                      +.|++||+.+++..... ....|.+++........+..+...+....+ ++|.+++...   .++. |.+||+.+++.  
T Consensus       232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~~  309 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARAS  309 (695)
T ss_dssp             EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGGG
T ss_pred             EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCccC
Confidence            99999999866544211 112455555444455666666666677767 5666444443   2467 99999987753  


Q ss_pred             eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ...+..+.....+..++|+ ++.++++...|+..+||.+.
T Consensus       310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            2344432124568889998 77788888899998888776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.53  E-value=2.1e-11  Score=108.43  Aligned_cols=236  Identities=11%  Similarity=-0.003  Sum_probs=154.2

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcc-cC---CceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE-RG---GGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      .++|+|||++|+++.           ++.|.+||..+.+......+. ..   ....-..+.+++++..++.++..   .
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~---~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---A  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC---C
Confidence            789999999998874           456999998876655333321 00   01223467888887766654321   0


Q ss_pred             CCcEEEEeCCCCcEEEE-EecCCceeEEEEeeCcc--EEE--eCCcEEEEEcCCCeEEEEEe-----ccCCCe-eEEEEe
Q 017642          155 LNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIE-----TIANPK-GLCAVS  223 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~--~d~~i~vwd~~~~~~~~~~~-----~~~~~v-~~~~~~  223 (368)
                      ++.|.++| .+++.+.+ +.....   +.+.+++.  ++.  .||.+.++|. +++......     ....++ ....+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            17899999 99998888 764433   44555543  222  6899999999 887663322     111121 224566


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCcce---eeeeec----------cCcceEEEEECCCCCEEEEEeC----------CC
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMA----------HDSRIACFALTQDGQLLATSST----------KG  280 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~~----------~~~~i~~v~~sp~g~~l~s~~~----------dg  280 (368)
                      +++..++++.   ..+.+.+.+.....   +..+..          .......++++++++.|+++..          .+
T Consensus       222 ~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          222 NKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            6766655443   45677774443321   112211          1122445789999997777643          34


Q ss_pred             cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCC
Q 017642          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~  340 (368)
                      . |.++|+.+++.+..+..+   ....+++|+|||+ +++++. .++.|.+||+.+++....
T Consensus       299 ~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          299 E-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             e-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            6 999999999999988753   3689999999999 777776 589999999999887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=1.3e-10  Score=99.81  Aligned_cols=233  Identities=11%  Similarity=-0.005  Sum_probs=156.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ...+.++++.++|.++++.. ++.|..|+.+  .......+. .....+..+.+++++.++++...+     +.|.+||.
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~  127 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKEYTLP-NPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD  127 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEEEeCC-CcCCCceeeEECCCCCEEEEecCC-----ceEEEECC
Confidence            35789999999999887776 6779999865  222122221 244567788888877766665544     78999998


Q ss_pred             CCCcEEEEE-e-cCCceeEEEEeeCccEEE-e--CCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          164 HQSRCIGEL-S-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       164 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                       +++..... . ....+..+++.+++.+.+ .  ++.|.+||. +++.... +.........+++.+++. ++++  ...
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~--~~~  202 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFV--EII  202 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEE--ETT
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEE--ccC
Confidence             55544322 2 346789999999988777 2  578999998 6665433 222344567788988876 3443  234


Q ss_pred             CCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642          238 KGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       238 dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      ++.|.+++.++..... ...+...+.+++++++|+++++...++. |.+||. +++ +..+....+...+.++++ ++|.
T Consensus       203 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          203 GNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSC
T ss_pred             CceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCCC
Confidence            6778877664433221 2334567899999999997766656777 999998 454 334432223457899999 8888


Q ss_pred             EEEEEeCCCeEEEEEccCC
Q 017642          317 WLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~  335 (368)
                      ++++.. .+.|..++.+++
T Consensus       279 l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          279 IWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             EEEEET-TTEEEEEEEC--
T ss_pred             EEEEec-CCcEEEEEcCcc
Confidence            777655 567888887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=4.6e-12  Score=122.23  Aligned_cols=245  Identities=10%  Similarity=0.075  Sum_probs=152.4

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-----C-CeEEEEEecCCCcceEEEcccCCceeEEEEEEe-CCeEEEEecCCCC---
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-----D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDP---  151 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-----d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~---  151 (368)
                      ..|...+..++|||||++||.+.     + ..|++||+++++.... .+.   ......+.|+ .+.+++.+.....   
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~---~~k~~~~~WsDg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK---DVKFSGISWLGNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE---EEESCCCEEETTTEEEEEESSCCC---
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC---CceeccEEEeCCCEEEEEEecCccccc
Confidence            34666788999999999998654     1 2399999988764322 221   1111234454 4444444432100   


Q ss_pred             ---CCCCCcEEEEeCCCCcE--EEEEec----CCceeEEEEeeCccEEE---e----CCcEEEEEcCCCe-EEEEEeccC
Q 017642          152 ---QYPLNKVMIWDDHQSRC--IGELSF----RSEVRSVKLRRDRIIVV---L----EQKIFVYNFADLK-LLHQIETIA  214 (368)
Q Consensus       152 ---~~~~~~i~vwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~---~----d~~i~vwd~~~~~-~~~~~~~~~  214 (368)
                         ......|++|++.++..  ...+..    ...+..+.++|||++++   .    ...|+++|+.++. ....+..+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence               01125699999987643  333332    23478899999999886   1    2589999997763 344555555


Q ss_pred             CCeeEEEEecCCCeEEEEeecC-CCCeEEEEecCccee---eeeeccCcceEEEEECCCCCEEEEEeCCC---cEEEEEE
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFN  287 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~-~dg~i~i~~~~~~~~---~~~~~~~~~i~~v~~sp~g~~l~s~~~dg---~~i~iwd  287 (368)
                      ...... ++++++.+++.+... ..+.|..++......   ..+..|...+.  .|++++++|+....++   . |++||
T Consensus       281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~~d  356 (693)
T 3iuj_A          281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQFD  356 (693)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEEEC
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEEEE
Confidence            444443 778888876654211 135666666654332   45666665555  8889998777665544   5 89999


Q ss_pred             CCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC----CeEEEEEccCCC
Q 017642          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS  336 (368)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~  336 (368)
                      +..+ ....+... ..+.+..+.++++++.|+....+    ++|+.||+.+++
T Consensus       357 ~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          357 YEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            8744 44454432 34567788888888866655433    789999987764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.47  E-value=2.2e-10  Score=100.09  Aligned_cols=216  Identities=10%  Similarity=0.021  Sum_probs=144.0

Q ss_pred             CEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        87 ~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      -..+..|++++..+ +++. ++.|.+|+.++++..   .+.  ....+.++.+++++.++++..       ..|.+||..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~  117 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT---VHA--LPFMGSALAKISDSKQLIASD-------DGLFLRDTA  117 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EEE--CSSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE--CCCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence            45678999986544 5554 667999997754332   221  234577788888877777653       459999998


Q ss_pred             CCcEEEEEec-----CCceeEEEEeeCccEEEeC---------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          165 QSRCIGELSF-----RSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       165 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      +++.......     ...+.+++++++|++++.+         +.|+.+|  +++... +.........++|+++++.++
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEE
Confidence            8875433322     2358899999999877721         3566666  565433 322333456799999998766


Q ss_pred             EEeecCCCCeEEEEecC---c-ce-----eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc
Q 017642          231 LVCPGLQKGQVRVEHYA---S-KR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~---~-~~-----~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      ++  ...++.|.+++..   + ..     ...+......+..++++++|+++++...++. |.+||. +++.+..+..  
T Consensus       195 v~--~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~--  268 (326)
T 2ghs_A          195 FV--DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEV--  268 (326)
T ss_dssp             EE--ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEEC--
T ss_pred             EE--ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEEC--
Confidence            54  3456788887653   2 11     1122223456788999999997777766777 999997 6777777765  


Q ss_pred             CcccEEEEEEe-cCCCEEEEEeC
Q 017642          302 DRAEIYSLAFS-SNAQWLAVSSD  323 (368)
Q Consensus       302 ~~~~v~~l~~s-p~~~~l~s~s~  323 (368)
                      ....+.+++|+ ++++.|+.++.
T Consensus       269 ~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCcEEEEEecCCCCEEEEEec
Confidence            44579999998 88887755543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.46  E-value=1.5e-11  Score=109.13  Aligned_cols=215  Identities=11%  Similarity=0.097  Sum_probs=137.1

Q ss_pred             CCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEE-cccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEE
Q 017642           86 PTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~v  160 (368)
                      .....++|+|||++|+++.   ++.|.+||+++.+..  .. +.....   ..+.+.+.+ ..+++.+.|     |.+.+
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~--~~~i~~~~~---~~v~~~p~~~~~~~~~~~d-----g~~~~  177 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV--EDVTAAAGC---WSVIPQPNRPRSFMTICGD-----GGLLT  177 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE--EEEGGGTTE---EEEEECTTSSSEEEEEETT-----SSEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE--EEEecCCCc---ceeEEcCCCCeeEEEECCC-----CcEEE
Confidence            3456789999999998876   356999999876543  44 431221   112334432 333444444     88999


Q ss_pred             EeCCC-CcEEEEE------ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCe--EEEEEecc----------CCCee
Q 017642          161 WDDHQ-SRCIGEL------SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLK--LLHQIETI----------ANPKG  218 (368)
Q Consensus       161 wd~~~-~~~~~~~------~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~--~~~~~~~~----------~~~v~  218 (368)
                      |+... ++.....      ........+.+++++..++   .++.|+++|+....  ....+...          .....
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~  257 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN  257 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred             EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence            98765 5544221      1111112333456654443   57889999986543  22222110          01122


Q ss_pred             EEEEecCCCeEEEEee-cC-------CCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          219 LCAVSQGVGSLVLVCP-GL-------QKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~-g~-------~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                      .++++++++.++++.. ..       ..+.|.+|+.. .+.+..+..+.  +.+|+|+|||++|++++. +. |.|||+.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v~v~D~~  333 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-VNVYDIS  333 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC-EEEEECS
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-EEEEECC
Confidence            3789999998777642 01       13478886654 46666677766  899999999999998887 88 9999999


Q ss_pred             CC--ceeEeeEeccCcccEEEEEEecCCC
Q 017642          290 DG--TLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       290 ~~--~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      ++  +.+..+..  .......++++|+|+
T Consensus       334 t~~l~~~~~i~~--~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          334 QPEPKLLRTIEG--AAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSSCEEEEEETT--SCSSEEEEEECCCSC
T ss_pred             CCcceeeEEecc--CCCCcEEEEecCCCC
Confidence            99  88887643  345678899999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=6e-10  Score=95.58  Aligned_cols=231  Identities=9%  Similarity=-0.009  Sum_probs=158.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ...+.++++.++|+++++.. ++.|.+|+.+ .+.. ...+. .....+..+.+++++.++++...+     +.|..||.
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d~   90 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVP-TPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLSK   90 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECC-CCCCcceeEEECCCCCEEEEecCC-----CeEEEECC
Confidence            45788999999999887775 6789999876 3322 22232 334567788888877766665544     78999997


Q ss_pred             CCCcEEEEEe---cCCceeEEEEeeCccEEE-e--CCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          164 HQSRCIGELS---FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       164 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      . ++.. .+.   ....+.++++.+++.+.+ .  ++.|..||.. ++.... +.........+++.++++ ++++.  .
T Consensus        91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--~  164 (300)
T 2qc5_A           91 K-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE--N  164 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE--T
T ss_pred             C-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe--c
Confidence            7 6543 333   346789999999988777 2  6789999987 654422 222344567888988887 44432  3


Q ss_pred             CCCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          237 QKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      .++.|..++.++..... ...+...+..++++++|+++++....+. |.+||. +++... +........+.+++++++|
T Consensus       165 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          165 QNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGKNS  241 (300)
T ss_dssp             TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECSTT
T ss_pred             CCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECCCC
Confidence            45677776665443321 2234456899999999987777666777 999997 555443 2221134568999999999


Q ss_pred             CEEEEEeCCCeEEEEEc
Q 017642          316 QWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~  332 (368)
                      +++++...++.|..||.
T Consensus       242 ~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          242 EIWFTEWGANQIGRITN  258 (300)
T ss_dssp             CEEEEETTTTEEEEECT
T ss_pred             CEEEeccCCCeEEEECC
Confidence            97777666788999987

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.43  E-value=3.7e-11  Score=103.42  Aligned_cols=192  Identities=10%  Similarity=0.038  Sum_probs=132.7

Q ss_pred             CceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-e--CCcEEEEEcC
Q 017642          128 GGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFA  202 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~  202 (368)
                      +......+.|++++. +++++..+     +.|..||..++  ...+. +...+.+++++++|.+++ .  ++.|.+||..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             CCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            344456788888775 45554444     89999998877  55555 677899999999998877 2  4689999998


Q ss_pred             CCeEEEEEecc----CCCeeEEEEecCCCeEEEEee--cC-------------CCCeEEEEecCcceeeeeeccCcceEE
Q 017642          203 DLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GL-------------QKGQVRVEHYASKRTKFIMAHDSRIAC  263 (368)
Q Consensus       203 ~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~--g~-------------~dg~i~i~~~~~~~~~~~~~~~~~i~~  263 (368)
                      +++........    ...+..++++++|+. +++.+  |.             ..+.|..++.. .....+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSL-WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCE-EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCE-EEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            88765443221    123567899999863 33211  21             12345445444 334445556667899


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEECC-CCce---eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          264 FALTQDGQLLATSSTKGTLVRIFNTL-DGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       264 v~~sp~g~~l~s~~~dg~~i~iwd~~-~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ++|+|+|++|++.+.++. |++||+. +++.   ...+ .. +.+.+.+++++++|+++++.  ++.|.+||.+
T Consensus       177 i~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             EEECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            999999998877777788 9999987 5554   2333 21 44567789999999977666  7889999975

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=2.8e-11  Score=108.41  Aligned_cols=231  Identities=12%  Similarity=0.064  Sum_probs=147.3

Q ss_pred             CCCEEEEEe--C----CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC----------CCCCCCCCcEE
Q 017642           96 DHGCFAAGT--D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKVM  159 (368)
Q Consensus        96 ~g~~l~~~~--d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~d~~~~~~~i~  159 (368)
                      +++.+.+..  +    +.|.++|..+.+.......  + ...  .+.+++++..++.+.          .+     +.|.
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~Vs  152 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--G-FLP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYVE  152 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--C-SSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--C-CCC--ceEECCCCCEEEEEeccccccccCCCC-----CEEE
Confidence            555554444  2    5699999888776644333  2 223  677787765444332          23     6899


Q ss_pred             EEeCCCCcEEEEEecC--------CceeEEEEeeCccEEE---e--CCcEEEEEcCCCeEEEEEeccCC-------CeeE
Q 017642          160 IWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVV---L--EQKIFVYNFADLKLLHQIETIAN-------PKGL  219 (368)
Q Consensus       160 vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~---~--d~~i~vwd~~~~~~~~~~~~~~~-------~v~~  219 (368)
                      ++|..+++.+.++...        .....+.++|||++++   .  ++.|.++|+.+++.+..+.....       ....
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~  232 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF  232 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence            9999999999888732        3467899999998777   2  46899999999998887754211       0111


Q ss_pred             EEEecCCCeEEEEee----------------------------------cCCCCeEEEEecCcceeeeeec---------
Q 017642          220 CAVSQGVGSLVLVCP----------------------------------GLQKGQVRVEHYASKRTKFIMA---------  256 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~----------------------------------g~~dg~i~i~~~~~~~~~~~~~---------  256 (368)
                      +.++++|+..++...                                  ....+.+.+.+.....+..+..         
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence            334444443222110                                  0012333332221111110000         


Q ss_pred             ----cCcceEEEEECCCCCEEEEEeC----------CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEE
Q 017642          257 ----HDSRIACFALTQDGQLLATSST----------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS  321 (368)
Q Consensus       257 ----~~~~i~~v~~sp~g~~l~s~~~----------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~  321 (368)
                          .......++++++++.+++...          .+. |.++|+.+.+.+..+..+   ....++.|+|||+ ++++.
T Consensus       313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~  388 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYAL  388 (426)
T ss_dssp             GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEE
T ss_pred             ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEE
Confidence                0011223688999887666542          346 999999999999999863   3588999999999 88888


Q ss_pred             e-CCCeEEEEEccCCCCCCC
Q 017642          322 S-DKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       322 s-~dg~i~iwd~~~~~~~~~  340 (368)
                      . .++.|.|+|+.+.+....
T Consensus       389 n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          389 SAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             ETTTTEEEEEETTTCCEEEE
T ss_pred             cCCCCeEEEEECCCCCEEEE
Confidence            7 589999999999887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=7.5e-11  Score=103.85  Aligned_cols=234  Identities=11%  Similarity=-0.005  Sum_probs=149.1

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccCC----ceeEEEEEEeCCeEEEEecC--CCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGG--PDPQ  152 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~--~d~~  152 (368)
                      .++++|||++|.++.           ++.|.+||..+.+......+..+.    ...-..+.+++++..++..+  .+  
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~--  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA--  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence            399999999886664           355999999887765444332100    11233567777776544332  24  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc-c-EEE--eCCcEEEEEcCC-CeEEEEEeccC----CCee-EEEE
Q 017642          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-I-IVV--LEQKIFVYNFAD-LKLLHQIETIA----NPKG-LCAV  222 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~-~l~--~d~~i~vwd~~~-~~~~~~~~~~~----~~v~-~~~~  222 (368)
                         +.|.++|+.+++.+.++...+.   ..+.|.+ + ++.  .||++.+.++.+ ++.........    .++. ...|
T Consensus       160 ---~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~  233 (386)
T 3sjl_D          160 ---PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY  233 (386)
T ss_dssp             ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred             ---CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence               7999999999999999874432   2223433 2 222  588888888865 55432221111    1221 1345


Q ss_pred             e-cCCCeEEEEeecCCCCeEEEEecCcce---eeeee----------ccCcceEEEEECCCCCEEEEEeC----------
Q 017642          223 S-QGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIM----------AHDSRIACFALTQDGQLLATSST----------  278 (368)
Q Consensus       223 ~-~~~~~~~l~~~g~~dg~i~i~~~~~~~---~~~~~----------~~~~~i~~v~~sp~g~~l~s~~~----------  278 (368)
                      . ++|+ +++++   .+|.+++.+..+..   ...+.          -.......++++++++.|+....          
T Consensus       234 ~~~dG~-~~~vs---~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~  309 (386)
T 3sjl_D          234 SQKAGR-LVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  309 (386)
T ss_dssp             ETTTTE-EEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             EcCCCc-EEEEe---CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence            4 5664 33333   46889886654432   22221          01223445778999987777643          


Q ss_pred             CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEE-eCCCeEEEEEccCCCCCC
Q 017642          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS-SDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~-s~dg~i~iwd~~~~~~~~  339 (368)
                      ... |.+.|+.+++.+..+..+   ..+++|++++|++ +|++. ..++.|.++|..+++...
T Consensus       310 ~~~-V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          310 SRF-VVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             EEE-EEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCE-EEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            135 999999999999998864   3688999999997 66665 458999999999887654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.41  E-value=2.1e-10  Score=99.13  Aligned_cols=227  Identities=11%  Similarity=0.036  Sum_probs=146.3

Q ss_pred             CCCCEEEEEEcCCCCEE-EEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           84 PPPTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .........|+++|+.| +++. ++.|..|+.. ++ .  ..+. .....+..+.+++++.++++...+     +.|.+|
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~--~~~~-~~~~~~~gl~~d~dG~l~v~~~~~-----~~v~~~  112 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V--DVLL-DATAFTNGNAVDAQQRLVHCEHGR-----RAITRS  112 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E--EEEE-ESCSCEEEEEECTTSCEEEEETTT-----TEEEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E--EEEe-CCCCccceeeECCCCCEEEEECCC-----CEEEEE
Confidence            44567789999999954 5554 6679999863 22 2  2222 334457788899888777765544     789999


Q ss_pred             eCCCCcEEEEEe-c----CCceeEEEEeeCccEEEeC--------------------CcEEEEEcCCCeEEEEEeccCCC
Q 017642          162 DDHQSRCIGELS-F----RSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIETIANP  216 (368)
Q Consensus       162 d~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~d--------------------~~i~vwd~~~~~~~~~~~~~~~~  216 (368)
                      +.. ++...... .    ...+..+++.++|.+.+.|                    +.|+.||..+++.....  ....
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            975 55433222 1    2346789999999988843                    45777777666544333  3344


Q ss_pred             eeEEEEecCCCeEEEEeecC---CCCeEEEEecCcceee---ee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECC
Q 017642          217 KGLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASKRTK---FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~---~dg~i~i~~~~~~~~~---~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~  289 (368)
                      ...++|+++++.++++.+..   ..+.|.+++.....+.   .+ .........++++++|++.+ ++.+ . |.+||. 
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-g-v~~~~~-  265 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-G-VCVFDS-  265 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-E-EEEECT-
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-c-EEEECC-
Confidence            56799999999876654210   0257777655432211   11 11233456789999999544 4444 5 999997 


Q ss_pred             CCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       290 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +++.+..+..  .. .+.+++|+++++.|+.++.++ |..++
T Consensus       266 ~g~~~~~~~~--~~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          266 DGQLLGHIPT--PG-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             TSCEEEEEEC--SS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CCCEEEEEEC--CC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            6777777765  22 588999999998888877664 44333

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=6e-12  Score=111.21  Aligned_cols=169  Identities=11%  Similarity=0.094  Sum_probs=121.9

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCC---------cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .++.+++++...++++|+..++++|+++...         .......  .... +..+.|  ++..++.+ .+     +.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d~~~L~v~-~~-----~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--HGDQVLVS-TR-----NA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--ETTEEEEE-ES-----SE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--CCCEEEEE-cC-----Cc
Confidence            5888999999999999997788899976433         1110112  2333 788888  33333333 44     89


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      |++||+.+........ +...+.++.+.+....++ .||.|.+||+.+++...    +...|.+++|+|+|  +++   |
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~v---g  178 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAV---L  178 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEE---E
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEE---E
Confidence            9999998776555554 777888888776653333 79999999999887643    34579999999999  233   4


Q ss_pred             CCCCeEEEEecCcce---eeee------e---ccCcceEEEEECCCCCEEEE
Q 017642          236 LQKGQVRVEHYASKR---TKFI------M---AHDSRIACFALTQDGQLLAT  275 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~---~~~~------~---~~~~~i~~v~~sp~g~~l~s  275 (368)
                      ..||.+++|...+..   ...+      .   +|...|.+|.|.+++.++++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            579999998777765   3344      2   37788999999999998876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=8.7e-11  Score=114.24  Aligned_cols=235  Identities=8%  Similarity=-0.025  Sum_probs=145.1

Q ss_pred             cCCCCEEEEEe-CCe---EEEEEecCC---CcceEEE-----cccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           94 NQDHGCFAAGT-DHG---FRIYNCDPF---REIFRRD-----FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        94 s~~g~~l~~~~-d~~---i~iw~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      +|+|++++... +++   -.+|..+..   .......     +..++...+..+.|+|++..++.+..+.......|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            38999887766 433   566766532   2222222     11123346778899998876655432100001369999


Q ss_pred             eCCCCcEEEEEecCCceeEEEEeeCccEEE---eCC--------------cEEEEEcCCCeE--EEEEeccC--CCeeEE
Q 017642          162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQ--------------KIFVYNFADLKL--LHQIETIA--NPKGLC  220 (368)
Q Consensus       162 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~--------------~i~vwd~~~~~~--~~~~~~~~--~~v~~~  220 (368)
                      |+.+++.+....+...+..++|+|| +.++   .++              .|++|++.+++.  ...+....  ..+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999987654323333468899999 7766   232              399999977652  22333222  347789


Q ss_pred             EEecCCCeEEEEeecC--CCCeEEEEecCcc--e-eeeeeccCcceEEEEECCCCCEEEEEeC----CCcEEEEEECCCC
Q 017642          221 AVSQGVGSLVLVCPGL--QKGQVRVEHYASK--R-TKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDG  291 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~--~dg~i~i~~~~~~--~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~----dg~~i~iwd~~~~  291 (368)
                      .|++||+.+++.....  ....|++++....  . ...+..+...+.... +++|+.|+..+.    ++. |.+||+.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence            9999999866654211  2347888776554  3 555665555555554 488988777665    445 999998875


Q ss_pred             -ceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          292 -TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       292 -~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                       .....+..+ +...+..+.|+ ++.++++...|+..+||.+.
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             233344432 34457778887 56777888889988888765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=4.3e-10  Score=98.95  Aligned_cols=231  Identities=8%  Similarity=-0.015  Sum_probs=150.4

Q ss_pred             CCEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcc------cCCceeEEEEEEeCCeEEEEecCC-----CC
Q 017642           86 PTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGP-----DP  151 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~-----d~  151 (368)
                      ..+..++++++|+++++..   ++.++||.++.++ .  ..+.      ..+-..+..+.+++++.+++....     + 
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~--~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~-   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-L--IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV-   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-E--EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC-
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-e--ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC-
Confidence            6789999999999988864   2326777776322 1  2221      123467889999987765554321     2 


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEecC-------CceeEEEEeeC-ccEEEe------CCcEEEEEcCCCeEEEEEeccC---
Q 017642          152 QYPLNKVMIWDDHQSRCIGELSFR-------SEVRSVKLRRD-RIIVVL------EQKIFVYNFADLKLLHQIETIA---  214 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~l~~------d~~i~vwd~~~~~~~~~~~~~~---  214 (368)
                          +.|.+||+.+++.+..+...       ..+..++++++ +...+.      ++.|.+||+.+++..+.+..|.   
T Consensus        93 ----~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A           93 ----PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             ----CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             ----CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence                68999999999887777622       34689999975 444442      4689999998887666553310   


Q ss_pred             --------------------------CCeeEEEEecCCCeEEEEeecCCCCeEEEEecC----c-----ceee--eeecc
Q 017642          215 --------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA----S-----KRTK--FIMAH  257 (368)
Q Consensus       215 --------------------------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~----~-----~~~~--~~~~~  257 (368)
                                                .....++++++++.++++..  ....+...+..    .     +...  ...++
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~  246 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSE  246 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence                                      12466899999987666532  23344332211    0     0001  11234


Q ss_pred             CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642          258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (368)
Q Consensus       258 ~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  328 (368)
                      ......++++++|+++++...++. |.+||..+++.. .+....+...+.+++|.++|+++++.+..+.+.
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSA-IGVITSADRAYK-LLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA  315 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTTEEE-EEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred             CCCCceEEECCCCCEEEEccCCCe-EEEEECCCCCEE-EEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence            445677999999998888888888 999998566643 333221234689999999999888876544443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=1.8e-09  Score=92.57  Aligned_cols=231  Identities=10%  Similarity=0.001  Sum_probs=152.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ...+.++++.++|+++++.. ++.|.+||.+ ++. ....+. ........+.+++++.++++...+     +.|..||.
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~  132 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLP-QPDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTA  132 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS-STTCCEEEEEECSTTCEEEEETTT-----TEEEEECT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCC-CCCCCCccceECCCCCEEEEccCC-----CeEEEECC
Confidence            35788999999999777766 5679999866 332 222222 234567788888777666665544     78999997


Q ss_pred             CCCcEEEE-Ee-cCCceeEEEEeeCccEEE-e--CCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          164 HQSRCIGE-LS-FRSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       164 ~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      . ++.... +. ....+..+++.+++.+.+ .  ++.|..||. +++.... +.........+++.+++. ++++.  ..
T Consensus       133 ~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--~~  207 (300)
T 2qc5_A          133 D-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGA-LWFVE--IM  207 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEE--TT
T ss_pred             C-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCC-EEEEc--cC
Confidence            7 654422 22 346789999999988666 2  578999998 5554432 122334567788888874 44432  34


Q ss_pred             CCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642          238 KGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       238 dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      .+.|.+++..+..... +..+...+.+++++++|+++++...++. |..||. +++.. .+........+.++++.++|+
T Consensus       208 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          208 GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGS  284 (300)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCCC
Confidence            5677777665443322 2334566899999999997776666677 999997 45433 333221335688999999998


Q ss_pred             EEEEEeCCCeEEEEEcc
Q 017642          317 WLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~  333 (368)
                      ++++.. . .|..+|.+
T Consensus       285 l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          285 VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEECS-S-EEEEEEEC
T ss_pred             EEEEcc-C-ceEEeCCC
Confidence            666554 4 67777653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=1.7e-09  Score=95.96  Aligned_cols=228  Identities=12%  Similarity=0.056  Sum_probs=144.4

Q ss_pred             CCCCEEEEEe--CCeEEEEEecCC--CcceEEEcc------cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           95 QDHGCFAAGT--DHGFRIYNCDPF--REIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        95 ~~g~~l~~~~--d~~i~iw~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      .++++|++.+  ++.|.|+|+.+.  +....+.++      ......-..+...++++++...+....-..+.|.++|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            8899988877  666999998643  334444441      012223345566788855543332111122689999999


Q ss_pred             CCcEEEEEe-cCC---ceeEEEEeeCccEEE-e---------------------CCcEEEEEcCCCeEEEEEeccC--CC
Q 017642          165 QSRCIGELS-FRS---EVRSVKLRRDRIIVV-L---------------------EQKIFVYNFADLKLLHQIETIA--NP  216 (368)
Q Consensus       165 ~~~~~~~~~-~~~---~v~~~~~~~~~~~l~-~---------------------d~~i~vwd~~~~~~~~~~~~~~--~~  216 (368)
                      +++.+.++. ...   --+.+-|+|+++.++ .                     +.+|.+||+.+++.+.++....  ..
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            999999987 222   245688899998777 3                     4799999999998888886531  12


Q ss_pred             eeEEEE--ecCCCeEEEEee---cCCCCeEEEEecCcce---eee--eec----------------cCcceEEEEECCCC
Q 017642          217 KGLCAV--SQGVGSLVLVCP---GLQKGQVRVEHYASKR---TKF--IMA----------------HDSRIACFALTQDG  270 (368)
Q Consensus       217 v~~~~~--~~~~~~~~l~~~---g~~dg~i~i~~~~~~~---~~~--~~~----------------~~~~i~~v~~sp~g  270 (368)
                      ...+.|  +|+++..++++.   -..+++|.+|..+...   .+.  +..                -......|.+++||
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            223444  999998777642   0045677663332211   111  111                02346789999999


Q ss_pred             CEEEEEeCCCcEEEEEECCC---CceeEeeEeccC------------cccEEEEEEecCCCEEEEEe
Q 017642          271 QLLATSSTKGTLVRIFNTLD---GTLLQEVRRGAD------------RAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       271 ~~l~s~~~dg~~i~iwd~~~---~~~~~~~~~~~~------------~~~v~~l~~sp~~~~l~s~s  322 (368)
                      ++|+++......|.+||+..   .+.+..+..+..            .+.-..++++|||++|+++.
T Consensus       333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            98888777443399999863   345555544200            01357899999999999887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.36  E-value=1.2e-09  Score=94.06  Aligned_cols=198  Identities=13%  Similarity=0.094  Sum_probs=130.5

Q ss_pred             EEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEE
Q 017642          132 VVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQ  209 (368)
Q Consensus       132 ~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~  209 (368)
                      .-...|++ ++.++++....     +.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||.++++....
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEE
Confidence            34566776 34444444444     8999999887765 4556678899999999999777 678999999988865433


Q ss_pred             Eecc----CCCeeEEEEecCCCeEEEEeecC---------CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEE-E
Q 017642          210 IETI----ANPKGLCAVSQGVGSLVLVCPGL---------QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-T  275 (368)
Q Consensus       210 ~~~~----~~~v~~~~~~~~~~~~~l~~~g~---------~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~-s  275 (368)
                      ....    ...+..+++.++|+ +++...+.         ..+.|...+..+.. ..+..+....+.++|+|+++.|+ +
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEe
Confidence            3221    23467789999987 44433221         12334334433332 23333444568999999998665 4


Q ss_pred             EeCCCcEEEEEEC--CCCcee--EeeEe-ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          276 SSTKGTLVRIFNT--LDGTLL--QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       276 ~~~dg~~i~iwd~--~~~~~~--~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .+.++. |.+||+  .++...  ..+.. ..+.+....+++.++|++.++...++.|.+||.++++..
T Consensus       167 ~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          167 DSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             cCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            455677 999987  455432  11211 112356789999999998888777889999999877643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=2e-11  Score=107.84  Aligned_cols=171  Identities=15%  Similarity=0.138  Sum_probs=121.3

Q ss_pred             eEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc-----------EEEEEecCCceeEEEEeeCccEEE--eCCcEE
Q 017642          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELSFRSEVRSVKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~  197 (368)
                      .+..++.++....+++++.      ..+++|++.+.+           ......+.. |+.++|  |+.+++  .++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCC------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence            3556677776655666655      478889865332           223445666 999999  777776  789999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~  277 (368)
                      +||+++......+..+...+..+.+.+.  .+++   +..||.+.+|+........   +...|+|++|+|+|  ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av---~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVI---LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEE---EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEecCC--CEEE---EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence            9999876655555566667766555433  3332   3479999999887544332   45689999999999  67899


Q ss_pred             CCCcEEEEEECCCCce--eEeeEe----c---cCcccEEEEEEecCCCEEEEE
Q 017642          278 TKGTLVRIFNTLDGTL--LQEVRR----G---ADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       278 ~dg~~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      .||. +++|+...++.  ..++..    .   .|...|.+|.|.+++.++++-
T Consensus       180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9999 99998877765  555521    1   146789999999999988864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.30  E-value=2.2e-10  Score=96.93  Aligned_cols=194  Identities=9%  Similarity=-0.012  Sum_probs=128.8

Q ss_pred             eEEEEEEeCCeEEEE-ecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeE
Q 017642          131 GVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL  206 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~-s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~  206 (368)
                      ....+++++++.+++ +...+     +.|.+||..++....... ....+.++++++++.+++  .++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            566788888777666 54444     899999976554322111 335788999999988766  367899999865543


Q ss_pred             EEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee-eeccCcceEEEEECCCCCEEEEEeCCCcEEE
Q 017642          207 LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVR  284 (368)
Q Consensus       207 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~  284 (368)
                       ..+. ........+++.++++ ++++  ...++.|.+++........ .......+.+++++++|+++++...++. |.
T Consensus       100 -~~~~~~~~~~p~~i~~~~~g~-l~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~  174 (270)
T 1rwi_B          100 -TVLPFDGLNYPEGLAVDTQGA-VYVA--DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VV  174 (270)
T ss_dssp             -EECCCCSCSSEEEEEECTTCC-EEEE--EGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EE
T ss_pred             -eeeecCCcCCCcceEECCCCC-EEEE--ECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EE
Confidence             3332 2224577899999886 4443  2346778776543322221 2223345788999999997777777778 99


Q ss_pred             EEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       285 iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +||............  +...+.+|+++++|.++++...++.|.+|+.....
T Consensus       175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            999877665433222  23568899999999877777778899999986543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=1.2e-09  Score=94.45  Aligned_cols=193  Identities=10%  Similarity=0.053  Sum_probs=127.2

Q ss_pred             EEEEEEeCCeEEEEe-------cCCCCCCCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEEeeC-ccEEE--eCCcE
Q 017642          132 VVEMLFRCNILALVG-------GGPDPQYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRD-RIIVV--LEQKI  196 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s-------~~~d~~~~~~~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~--~d~~i  196 (368)
                      ...++|++++.++++       ...+     +.|.+||..+++......     +...+.+++++++ +.+++  .++.|
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l   94 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence            456777777766666       4444     889999988887643322     3467899999999 87665  34589


Q ss_pred             EEEEcCCCeEEEE-Eec----cCCCeeEEEEecCCCeEEEEeecCCC---------------CeEEEEecCcceeeeeec
Q 017642          197 FVYNFADLKLLHQ-IET----IANPKGLCAVSQGVGSLVLVCPGLQK---------------GQVRVEHYASKRTKFIMA  256 (368)
Q Consensus       197 ~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~l~~~g~~d---------------g~i~i~~~~~~~~~~~~~  256 (368)
                      .+||.. ++.... ...    ....+..+++.++++ ++++.  ..+               +.|..++..++ ...+..
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~  169 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITA--PAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDT  169 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEE--CBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEe--cCcccccccccccccCCCCeEEEECCCCC-EEEecc
Confidence            999988 765433 221    123467899999886 34332  222               45555555433 333333


Q ss_pred             cCcceEEEEEC----CCCCEEEEE-eCCCcEEEEEECC-CCce-----eEeeEeccCc-ccEEEEEEecCCCEEEEEeCC
Q 017642          257 HDSRIACFALT----QDGQLLATS-STKGTLVRIFNTL-DGTL-----LQEVRRGADR-AEIYSLAFSSNAQWLAVSSDK  324 (368)
Q Consensus       257 ~~~~i~~v~~s----p~g~~l~s~-~~dg~~i~iwd~~-~~~~-----~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d  324 (368)
                      +......++|+    ++|+.|+.+ ..++. |.+||+. +++.     ...+..  +. ..+..++++++|+++++...+
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCC--CCCCCCCceEECCCCCEEEEEcCC
Confidence            44456889999    999765554 55677 9999986 4432     122221  22 467889999999988888788


Q ss_pred             CeEEEEEccCCCC
Q 017642          325 GTVHVFNLKVNSG  337 (368)
Q Consensus       325 g~i~iwd~~~~~~  337 (368)
                      +.|.+||.++++.
T Consensus       247 ~~i~~~d~~~g~~  259 (314)
T 1pjx_A          247 SHIEVFGPDGGQP  259 (314)
T ss_dssp             TEEEEECTTCBSC
T ss_pred             CEEEEEcCCCCcE
Confidence            8999999875544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.24  E-value=1.1e-08  Score=89.20  Aligned_cols=189  Identities=10%  Similarity=-0.025  Sum_probs=122.4

Q ss_pred             EEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEe
Q 017642          134 EMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE  211 (368)
Q Consensus       134 ~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~  211 (368)
                      ...|+++ +.++++...+     +.|..||..+++. ..+.....+.++++++++.+++ .+..|.+||..+++......
T Consensus        53 gp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred             CCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEee
Confidence            4566663 3444444333     8999999887754 3455567899999999998877 56679999998887543322


Q ss_pred             cc----CCCeeEEEEecCCCeEEEEeecC----CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEE-eCCCcE
Q 017642          212 TI----ANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTL  282 (368)
Q Consensus       212 ~~----~~~v~~~~~~~~~~~~~l~~~g~----~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~-~~dg~~  282 (368)
                      ..    ...+..++++++|+ +++...+.    ..+.|..++ ++ ....+..+......++|+|+|+.|+.+ +.++. 
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~-  202 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-  202 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-
T ss_pred             CCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE-
Confidence            11    23467889999987 34432111    123444444 33 333333344457899999999866555 45677 


Q ss_pred             EEEEECC--CC-cee--EeeEe-ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          283 VRIFNTL--DG-TLL--QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       283 i~iwd~~--~~-~~~--~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                      |.+||+.  ++ +..  ..+.. ......+..+++.++|.++++...++.|.+||.
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            9999986  55 321  12211 112345788999999998877767788999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.24  E-value=3.1e-08  Score=82.63  Aligned_cols=205  Identities=12%  Similarity=0.058  Sum_probs=137.0

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCC--ceeEEEEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~--~d~~i~  197 (368)
                      ..+.++.......+.+++++.++++.+..   ..+.|.++|+.+++.+..+....  ....+++..+..+++  .++.+.
T Consensus        13 ~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~   89 (266)
T 2iwa_A           13 NEFPHDPYAFTQGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF   89 (266)
T ss_dssp             EEEECCTTCCEEEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             EEEECCCCCCcccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence            33433444445678888855555554320   12799999999999999887333  233455554333333  489999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeecc--C---cceEEEEECCCCC
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH--D---SRIACFALTQDGQ  271 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~--~---~~i~~v~~sp~g~  271 (368)
                      ++|..+++.+.++... .+. ...+++|++.++++- |  ++.|.+.+... +.+..+...  .   ..++.+.|. +|+
T Consensus        90 viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~-g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSD-G--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             EEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEEC-C--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            9999999999988644 121 245778998866532 3  67888855443 545554422  1   136788888 776


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEecc-----------CcccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCC
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~  336 (368)
                      +++....++. |.+.|..+++.+..+....           .......|+|+|+++.| +++...++|.+.++....
T Consensus       164 lyvn~~~~~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          164 VWANIWQTDC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTSSE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEecCCCCe-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            5555555677 9999999999998887520           01256899999998755 555578899999998764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=3.6e-09  Score=95.20  Aligned_cols=194  Identities=10%  Similarity=0.006  Sum_probs=129.5

Q ss_pred             eEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCC--cEEEEEcCCCe
Q 017642          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQ--KIFVYNFADLK  205 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~--~i~vwd~~~~~  205 (368)
                      ....+++++++.++++...+     +.|++||..+++............ ++|++++..++   .++  .|++|+...+.
T Consensus       132 ~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            46678888888777776655     899999988877665555444444 99999998665   223  79999987654


Q ss_pred             EEEEE----eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeee-----eccCcce-E-EEEECCC-CCEE
Q 017642          206 LLHQI----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-----MAHDSRI-A-CFALTQD-GQLL  273 (368)
Q Consensus       206 ~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~-----~~~~~~i-~-~v~~sp~-g~~l  273 (368)
                      ....+    .........+++++++..+++ +  ..++.|+.++........+     .++...- . .++|+|+ +.++
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~--d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYF-V--DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEE-E--CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEE-E--ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            43333    213455677999996666555 2  2477888877665444333     1122222 3 8999995 5555


Q ss_pred             EEEeCCCcEEEEEECCCCceeEeeEecc-------------CcccEEEEEEecCCCEEEEEe-CCCeEEEEEccCCC
Q 017642          274 ATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS  336 (368)
Q Consensus       274 ~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~  336 (368)
                      ++-..++. |+.|+... + +..+.+..             .-.....++++++|+++++-. .++.|+.|++.++.
T Consensus       283 v~d~~~~~-I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          283 MSDQNLSS-VYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEETTTTE-EEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEeCCCCE-EEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            56566777 99998653 3 33333310             013478999999999877777 78999999976554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=1.1e-07  Score=80.23  Aligned_cols=231  Identities=6%  Similarity=-0.047  Sum_probs=138.1

Q ss_pred             CCEEEEEeCCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE
Q 017642           97 HGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (368)
Q Consensus        97 g~~l~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~  172 (368)
                      |.+|..+..+.|+.++++.....   ....+. ........+++++ ++.++++....     +.|..++...+.....+
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII   74 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEE
Confidence            45666666557888888754321   011111 1223456788886 34455554444     89999998766544333


Q ss_pred             e-cCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          173 S-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       173 ~-~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      . .......+++++++. +.+   ..+.|.++++........+.........+++++++..++++-.+...+.|...+.+
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            3 235788999998644 443   35789999986432222222222345678999988777765422224677766655


Q ss_pred             cceeeeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       248 ~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      +.....+. ........+++++++..|+.+.. .+. |.++|+........+..   ......++.. ++.++++....+
T Consensus       155 g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~  229 (267)
T 1npe_A          155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTN  229 (267)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCC
Confidence            54443332 22345789999998776655554 456 99999875544333332   2234566654 344444444568


Q ss_pred             eEEEEEccCCCCC
Q 017642          326 TVHVFNLKVNSGS  338 (368)
Q Consensus       326 ~i~iwd~~~~~~~  338 (368)
                      .|.++|..+++..
T Consensus       230 ~v~~~d~~~g~~~  242 (267)
T 1npe_A          230 SVIAMDLAISKEM  242 (267)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             eEEEEeCCCCCce
Confidence            9999999877644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.17  E-value=4.6e-08  Score=86.78  Aligned_cols=232  Identities=8%  Similarity=-0.034  Sum_probs=141.9

Q ss_pred             CCCCEEEEEeC--C----eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCC-C----CCCCCcEEEEeC
Q 017642           95 QDHGCFAAGTD--H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-P----QYPLNKVMIWDD  163 (368)
Q Consensus        95 ~~g~~l~~~~d--~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~----~~~~~~i~vwd~  163 (368)
                      |+++++.+...  .    .|.+||..+++..  ..+. .....  .+.+++++..++.+... .    ...++.|.+||.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~-~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVN-GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEE--EEec-CCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            56665544431  1    6789998876654  4443 23222  77888887665554310 0    001268999999


Q ss_pred             CCCcEEEEEecC--------CceeEEEEeeCccEEE----e-CCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeE
Q 017642          164 HQSRCIGELSFR--------SEVRSVKLRRDRIIVV----L-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSL  229 (368)
Q Consensus       164 ~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~----~-d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  229 (368)
                      .+.+.+.++...        .....++++|||++++    . ++.|.++| .+++.+.. +....    ++.+.++++..
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~  179 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPST  179 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCce
Confidence            999888877632        3456899999999887    2 46799999 99988877 64322    25566777765


Q ss_pred             EEEeecCCCCeEEEEecCcceeeeee-----ccCcce-EEEEECCCCCEEEEEeCCCcEEEEEECCCCc--eeEeeEec-
Q 017642          230 VLVCPGLQKGQVRVEHYASKRTKFIM-----AHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRG-  300 (368)
Q Consensus       230 ~l~~~g~~dg~i~i~~~~~~~~~~~~-----~~~~~i-~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~~-  300 (368)
                      +++.  +.||.+.+++..++......     ....++ ....+.+++..++..+..+. +.+.|+..+.  .+..+... 
T Consensus       180 ~~~~--~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          180 FYLL--CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             EEEE--cCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeeeecC
Confidence            5554  35777777554444432211     111221 23456666665554556778 9999987653  22222210 


Q ss_pred             -------cCcccEEEEEEecCCCEEEEEeC----------CCeEEEEEccCCCCCC
Q 017642          301 -------ADRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSA  339 (368)
Q Consensus       301 -------~~~~~v~~l~~sp~~~~l~s~s~----------dg~i~iwd~~~~~~~~  339 (368)
                             ........+.+++|++.|+++..          ++.|.++|+.+.+...
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~  312 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence                   01223455789999998877643          3579999998887644

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=1.7e-09  Score=95.25  Aligned_cols=228  Identities=7%  Similarity=-0.017  Sum_probs=140.6

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccCC----ceeEEEEEEeCCeEEEEecC--CCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGG--PDPQ  152 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~--~d~~  152 (368)
                      .+.++|||+++.++.           ++.|.+||..+.+......+....    ...-..+.+++++..++.+.  ..  
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~--  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS--  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS--
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC--
Confidence            699999999887775           455999999888776444331000    01233567777775444332  22  


Q ss_pred             CCCCcEEE--EeCCCCcEEEEEecCCceeEEEEeeCc--cEEE--eCCcEEEEEcCC-----CeEEE----EEeccCCCe
Q 017642          153 YPLNKVMI--WDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-----LKLLH----QIETIANPK  217 (368)
Q Consensus       153 ~~~~~i~v--wd~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~--~d~~i~vwd~~~-----~~~~~----~~~~~~~~v  217 (368)
                         +.|.+  +|+.+   +.++...+.   +.+.|++  .+++  .|+.+.+.|+.+     ++...    .+.....+.
T Consensus       147 ---~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~  217 (368)
T 1mda_H          147 ---AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA  217 (368)
T ss_dssp             ---CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred             ---CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc
Confidence               67888  99877   555553222   2234544  3333  588888889876     44321    111122232


Q ss_pred             eEEEEecCCCeEEEEeecCCCCeEEEEecCcc---eeeeeec-------c---CcceEEEEECCCCCEEEEEeC-C----
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMA-------H---DSRIACFALTQDGQLLATSST-K----  279 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~-------~---~~~i~~v~~sp~g~~l~s~~~-d----  279 (368)
                         . .+++..++++.   . +.+.+.+....   .+..+..       +   ......+++++|++.++.+.. .    
T Consensus       218 ---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~  289 (368)
T 1mda_H          218 ---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             ---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             ---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc
Confidence               3 66666644433   3 77777444321   1221110       1   111222689999997776543 2    


Q ss_pred             ----CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEe-CCCeEEEEEccCCCCCCC
Q 017642          280 ----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       280 ----g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~dg~i~iwd~~~~~~~~~  340 (368)
                          +. +.++|+.+++.+..+..+   .....|+|+|||+ ++++.. .++.|.++|+.+.+....
T Consensus       290 ~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~  352 (368)
T 1mda_H          290 LAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             TSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             cccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence                35 679999999999998863   2588999999998 456666 589999999999876543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=5.1e-09  Score=100.94  Aligned_cols=196  Identities=8%  Similarity=0.077  Sum_probs=126.6

Q ss_pred             CceeEEEEEEeCCeEEEEe-----cCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCC-----
Q 017642          128 GGIGVVEMLFRCNILALVG-----GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQ-----  194 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s-----~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~-----  194 (368)
                      +...+..+.|++++..++-     +++.     ..|++||+.+++.+...........++|+ |++.++   .+.     
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~-----~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDW-----REIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCE-----EEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCce-----EEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence            4456778899999877662     3322     57999999999876542222224678899 998777   242     


Q ss_pred             --------cEEEEEcCCCeE--EEEEec---cCCCeeEEEEecCCCeEEEEee-cCCCCeEEEEecCcc--eeeeeeccC
Q 017642          195 --------KIFVYNFADLKL--LHQIET---IANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASK--RTKFIMAHD  258 (368)
Q Consensus       195 --------~i~vwd~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~~~l~~~-g~~dg~i~i~~~~~~--~~~~~~~~~  258 (368)
                              .|++|++.++..  ...+..   +......+.+++||+.+++... +.....|++++....  ....+..+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence                    399999976542  223322   2334667899999998666542 223357888765443  455666666


Q ss_pred             cceEEEEECCCCCEEE-EEeCC---CcEEEEEECCCCce--eEeeEeccCcccEEEEEEecCCCEEEEEeC-CC--eEEE
Q 017642          259 SRIACFALTQDGQLLA-TSSTK---GTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVHV  329 (368)
Q Consensus       259 ~~i~~v~~sp~g~~l~-s~~~d---g~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~i  329 (368)
                      ...... |+++|..|+ ....+   +. |.++|+.++..  ...+..  +...+.  .|+++++.|+.... ++  .|++
T Consensus       281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          281 DADVSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence            666555 566666544 44433   46 99999987654  334554  333444  89999998876654 44  6889


Q ss_pred             EEccCC
Q 017642          330 FNLKVN  335 (368)
Q Consensus       330 wd~~~~  335 (368)
                      |++..+
T Consensus       355 ~d~~g~  360 (693)
T 3iuj_A          355 FDYEGK  360 (693)
T ss_dssp             ECTTSC
T ss_pred             EECCCC
Confidence            988744

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.12  E-value=6.5e-08  Score=79.80  Aligned_cols=190  Identities=11%  Similarity=0.153  Sum_probs=125.9

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeE--EEEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~--~d~~i~  197 (368)
                      ..+.|........+.|+.+ .++.+.+.+   ....|+++|+.+++.+..+........  +++..+..+++  .++.+.
T Consensus        35 ~~~phd~~~ftqGL~~~~~-~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           35 HSYPHDTKAFTEGFFYRNG-YFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEECCTTCEEEEEEEETT-EEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEecCCCCcccceEEEECC-EEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            4444456666677888855 444444433   013899999999999999885555544  44444434444  489999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-cceeeeeecc--C---cceEEEEECCCCC
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAH--D---SRIACFALTQDGQ  271 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~--~---~~i~~v~~sp~g~  271 (368)
                      +||.++++.+.++.....   ...++++++.+++. .|  ++.|.+.+.. .+.+..+...  .   ..++.+.|. +|+
T Consensus       111 v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~S-dG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMS-DG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEETTTCCEEEEEECSSC---CCCEEECSSCEEEC-CS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECccCcEEEEEECCCC---ceEEecCCCEEEEE-CC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            999999999999875432   23455788765543 23  5678875544 4555554432  2   234567776 777


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEecc----------CcccEEEEEEecCCCEEEEEeC
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA----------DRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~----------~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      +.+..-.++. |.+.|.++++.+..+....          .....+.|+|+|+++.|.+.+.
T Consensus       184 lyan~w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          184 IFANVWQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEETTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEEccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6655555667 9999999999988877521          1135689999999887776664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.10  E-value=5e-09  Score=96.27  Aligned_cols=235  Identities=10%  Similarity=0.048  Sum_probs=150.0

Q ss_pred             CCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEE-e-CCeEEEEecCCCC-------------CCCCCc
Q 017642           95 QDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-R-CNILALVGGGPDP-------------QYPLNK  157 (368)
Q Consensus        95 ~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~~d~-------------~~~~~~  157 (368)
                      +||++|.+..  ++.|.+.|+++.+......+.  .......+.+ . +++.+++.++...             ...++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            4899998877  344999999988766444553  2223445554 2 4444443332100             011268


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e-C--------------------------------------CcE
Q 017642          158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-E--------------------------------------QKI  196 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~-d--------------------------------------~~i  196 (368)
                      +.++|..+.+.+.++...+....++++|+|++++  . +                                      +.|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999999999999988555778888999988777  1 1                                      247


Q ss_pred             EEEEcCC--CeE-EEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-------------eeeeeeccCcc
Q 017642          197 FVYNFAD--LKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-------------RTKFIMAHDSR  260 (368)
Q Consensus       197 ~vwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-------------~~~~~~~~~~~  260 (368)
                      .+.|.++  ++. +..+.... ...++.++|||+++++  ++..+.+|.+++....             ....+. -...
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V--~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g  332 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCV--AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  332 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEE--ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred             EEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEE--eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence            7777776  444 44554332 3346899999997554  3566788998766643             122222 2335


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEECCC----------CceeEeeEeccCcccE---EEEEEecCCCEEEEEeC---C
Q 017642          261 IACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEVRRGADRAEI---YSLAFSSNAQWLAVSSD---K  324 (368)
Q Consensus       261 i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~~~~~~~~~~~~~v---~~l~~sp~~~~l~s~s~---d  324 (368)
                      ...++|+++|...++.-.|+. |.+||+.+          .+.+.++..+...+..   .++.++|||++|++...   |
T Consensus       333 P~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd  411 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD  411 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred             cceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence            688999999954556666888 99999987          5567677663211111   12345799999998852   4


Q ss_pred             Ce----------EEEEEccCCC
Q 017642          325 GT----------VHVFNLKVNS  336 (368)
Q Consensus       325 g~----------i~iwd~~~~~  336 (368)
                      +.          -.++|+..++
T Consensus       412 r~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          412 RFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccccCCCCCCCcceEEEcCCCc
Confidence            42          1888985443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=4.6e-08  Score=93.72  Aligned_cols=237  Identities=9%  Similarity=0.037  Sum_probs=147.4

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcc-cCCc-eeEE-EEEEeCCeEEEEecCC-CCCCCCCcEEEEeCCCCcEEEE
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGGG-IGVV-EMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRCIGE  171 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~s~~~-d~~~~~~~i~vwd~~~~~~~~~  171 (368)
                      +..|++++ |+.|..+|..+++........ .... ..+. ......+ .++++... +. -.++.|+.||..+|+.+..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEY-GVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTT-CCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEeccccc-CCCCEEEEEECCCCcEEEE
Confidence            45666666 888999999888887665542 0000 0111 1112233 44443321 00 0128999999999999988


Q ss_pred             Eec-CCc--------------------------------eeEEEEeeCccEEE---eCC-------------------cE
Q 017642          172 LSF-RSE--------------------------------VRSVKLRRDRIIVV---LEQ-------------------KI  196 (368)
Q Consensus       172 ~~~-~~~--------------------------------v~~~~~~~~~~~l~---~d~-------------------~i  196 (368)
                      +.. ...                                ...+++++++..+.   .++                   .|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            762 111                                12467888766555   222                   49


Q ss_pred             EEEEcCCCeEEEEEeccCC---------CeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeeecc---------
Q 017642          197 FVYNFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMAH---------  257 (368)
Q Consensus       197 ~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~---------  257 (368)
                      ..+|.++|+.+..++....         ....+....+|+..-+++.++.+|.+++++. +++.+..+...         
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            9999999999888764221         1122333446642112223678999999554 44544333211         


Q ss_pred             --Ccce------------------------EEEEECCCCCEEEEEeC---------------------------------
Q 017642          258 --DSRI------------------------ACFALTQDGQLLATSST---------------------------------  278 (368)
Q Consensus       258 --~~~i------------------------~~v~~sp~g~~l~s~~~---------------------------------  278 (368)
                        ..++                        ..++++|++.++++...                                 
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  445 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF  445 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred             CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence              0111                        15688998887776543                                 


Q ss_pred             ----------CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          279 ----------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       279 ----------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                                .|. |..||+.+++.+..+..   ..++....+..++.+++.++.||.+++||+++++..-
T Consensus       446 ~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          446 FNAEPPKSKPFGR-LLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             ECSSCCCSCCEEE-EEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccCCCCCccE-EEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence                      167 99999999999888774   3345556677788888889999999999999998653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.08  E-value=3.2e-08  Score=95.01  Aligned_cols=236  Identities=11%  Similarity=0.040  Sum_probs=143.7

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcc-cCCc-eeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGGG-IGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~  172 (368)
                      +..|++++ |+.|..+|.++++........ +... ..+. .-... ++.++++.+....-.++.|+.||..+|+.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            44666666 888999999888877665441 0000 0000 00112 344444432100001289999999999998877


Q ss_pred             ec-C-C------------------------------ceeEEEEeeCccEEE---eCC-------------------cEEE
Q 017642          173 SF-R-S------------------------------EVRSVKLRRDRIIVV---LEQ-------------------KIFV  198 (368)
Q Consensus       173 ~~-~-~------------------------------~v~~~~~~~~~~~l~---~d~-------------------~i~v  198 (368)
                      .. . .                              ....+++++++.+++   .++                   .|..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            52 1 0                              012567888655555   233                   3999


Q ss_pred             EEcCCCeEEEEEeccCC---------CeeEEEEecCCCeE-EEEeecCCCCeEEEEec-Ccceeeeeecc----------
Q 017642          199 YNFADLKLLHQIETIAN---------PKGLCAVSQGVGSL-VLVCPGLQKGQVRVEHY-ASKRTKFIMAH----------  257 (368)
Q Consensus       199 wd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~-~l~~~g~~dg~i~i~~~-~~~~~~~~~~~----------  257 (368)
                      ||.++|+.+..++....         +.....+..+|+.. +++ .++.+|.+++++. +++.+......          
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~-~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLM-QAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEE-ECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEE-EECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            99999999988764211         11222233355421 233 3778999999554 44443211100          


Q ss_pred             ------------------Cc-----------ceEEEEECCCCCEEEEEeC------------------------------
Q 017642          258 ------------------DS-----------RIACFALTQDGQLLATSST------------------------------  278 (368)
Q Consensus       258 ------------------~~-----------~i~~v~~sp~g~~l~s~~~------------------------------  278 (368)
                                        ..           .-..++|+|+..++++...                              
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM  438 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence                              00           0113688888887776532                              


Q ss_pred             ---------------CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          279 ---------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       279 ---------------dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                                     +|. |+.||+.+++.+..+..+   .++..-.+...+.+++.++.||.|+.||.++++..
T Consensus       439 ~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          439 MPEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CCSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCcccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence                           377 999999999998887752   23444466677889999999999999999999865

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=2e-08  Score=87.32  Aligned_cols=218  Identities=12%  Similarity=0.016  Sum_probs=143.1

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-c
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~  174 (368)
                      +..|.+++ ++++..+|.+ ++.......   ....+..+....++.++++.. +     +.|..+|.. ++.+..+. .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~---~~~~~~~~~~~~~g~l~vgt~-~-----~~l~~~d~~-g~~~~~~~~~  175 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT---KKAIYATPIVSEDGTIYVGSN-D-----NYLYAINPD-GTEKWRFKTN  175 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSCCEECTTSCEEEECT-T-----SEEEEECTT-SCEEEEEECS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC---CCceeeeeEEcCCCEEEEEcC-C-----CEEEEECCC-CCEeEEEecC
Confidence            34455566 7889999876 444433332   222333445565555555443 2     789999988 88777776 4


Q ss_pred             CCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeee
Q 017642          175 RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF  253 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~  253 (368)
                      ...+.++...+++.+.+ . +.|..+| .+++.+..+......+.++...+++. +++   ++.++.+..++.++..+..
T Consensus       176 ~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v---~t~~~gl~~~~~~g~~~~~  249 (330)
T 3hxj_A          176 DAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYV---TSLDGHLYAINPDGTEKWR  249 (330)
T ss_dssp             SCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEE---EETTTEEEEECTTSCEEEE
T ss_pred             CCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEE---EcCCCeEEEECCCCCEeEE
Confidence            55677788878888777 6 9999999 78877777765556677777777764 333   3346667666666666655


Q ss_pred             eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       254 ~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +......+..+.+.+++. |..++.+|. |..+|. +++.+..+..  ....+.++....+|++ ..++.+|.+++...+
T Consensus       250 ~~~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          250 FKTGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFET--GSWIIATPVIDENGTI-YFGTRNGKFYALFNL  323 (330)
T ss_dssp             EECSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEEC--SSCCCSCCEECTTCCE-EEECTTSCEEEEEC-
T ss_pred             eeCCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEc--CCccccceEEcCCCEE-EEEcCCCeEEEEecc
Confidence            554444445566666665 666777878 999995 7777766664  3445677777778775 457889999988876


Q ss_pred             CCCC
Q 017642          334 VNSG  337 (368)
Q Consensus       334 ~~~~  337 (368)
                      ..+.
T Consensus       324 ~~~~  327 (330)
T 3hxj_A          324 EHHH  327 (330)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.06  E-value=4.5e-07  Score=74.17  Aligned_cols=199  Identities=15%  Similarity=0.180  Sum_probs=131.4

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEE--EEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSV--KLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~--~d~~i~  197 (368)
                      ..+.|......-.+.|+++.++..++...    ...|+.+|+.+++.+..+.........  ++..+..+.+  .++.+.
T Consensus        13 ~~~phd~~~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           13 KRYPHDTTAFTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEECCTTCCEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEcCCCCccccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            44555666777788999866665555431    248999999999999998855555444  4443333333  489999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeeecc--C---cceEEEEECCCCC
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMAH--D---SRIACFALTQDGQ  271 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~~--~---~~i~~v~~sp~g~  271 (368)
                      +||.++++.+.++......   ..+.++++.+++. .|  ++.|.+.+. +.+.+..+...  .   ..++.+.+. +|+
T Consensus        89 v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vS-dg--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~  161 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG---WALTSDDSHLYMS-DG--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE  161 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC---CEEEECSSCEEEE-CS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEE-CC--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence            9999999999998754332   4455788775553 23  677887554 44555554432  1   245667765 677


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEecc-----------CcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +++..-.+.. |.+.|.++++.+..+....           ...-.+.|+++|+++.|.+.+.-= =++|.++
T Consensus       162 lyanvw~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v~  232 (243)
T 3mbr_X          162 LLANVWLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEIR  232 (243)
T ss_dssp             EEEEETTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred             EEEEECCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEEE
Confidence            6655545667 9999999999998877421           123568999999887766655321 2345544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=1e-06  Score=74.22  Aligned_cols=215  Identities=5%  Similarity=-0.086  Sum_probs=133.5

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      .+..++|++++..|..+.  .+.|.+++.+.....  ..+. ........+++++ ++.++++....     +.|.+++.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~~  108 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIR-QDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAKM  108 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEEC-TTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEE-CCCCCccEEEEEecCCeEEEEECCC-----CEEEEEEc
Confidence            578899999877776666  556999998654332  2221 2223556777876 34444444443     78999997


Q ss_pred             CCCcEEEEEe-cCCceeEEEEeeC-ccEEEe-----CCcEEEEEcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEEEeec
Q 017642          164 HQSRCIGELS-FRSEVRSVKLRRD-RIIVVL-----EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~-----d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      .......... .......++++++ +.+.+.     .+.|..+++. ++....+. ........++++++++.++++-  
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d--  185 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVD--  185 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEE--
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEE--
Confidence            6443322222 2256789999995 444442     3578888875 33333332 2233456789999988877664  


Q ss_pred             CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      ...+.|.+.+..+.....+.........++..  +..|+.+. ..+. |.++|..+++.+..+..+. ......+++.|+
T Consensus       186 ~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~  261 (267)
T 1npe_A          186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHK-QTRLYGITIALS  261 (267)
T ss_dssp             TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred             CCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe-EEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence            34678888766654443332222334667664  44455454 4566 9999999999888876531 124677888887


Q ss_pred             CC
Q 017642          315 AQ  316 (368)
Q Consensus       315 ~~  316 (368)
                      +.
T Consensus       262 ~~  263 (267)
T 1npe_A          262 QC  263 (267)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.04  E-value=3.9e-08  Score=86.62  Aligned_cols=228  Identities=11%  Similarity=0.085  Sum_probs=137.3

Q ss_pred             cCCCCEEEEEeC------CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC----------CCCCCCCCc
Q 017642           94 NQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNK  157 (368)
Q Consensus        94 s~~g~~l~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~d~~~~~~~  157 (368)
                      .|+++.+.+...      +.|.++|..+.+.......  +. ..  .+.+++++..++.++          .+     +.
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~-~P--~va~spDG~~lyVan~~~~r~~~G~~~-----~~  110 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GF-LP--NPVVADDGSFIAHASTVFSRIARGERT-----DY  110 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CC-CC--cEEECCCCCEEEEEcccccccccCCCC-----CE
Confidence            478887777652      3589999877666533332  22 22  377888776544332          23     67


Q ss_pred             EEEEeCCCCcEEEEEecC--------CceeEEEEeeCccEEE---e--CCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642          158 VMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVV---L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~---~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  224 (368)
                      |.+||..+++.+.++...        .....++++|||+++.   .  ++.|.++|+.+++.+.++.....    ..+.|
T Consensus       111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P  186 (386)
T 3sjl_D          111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFP  186 (386)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEE
T ss_pred             EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeec
Confidence            999999999999988732        2567899999999766   2  57899999999999988854321    11223


Q ss_pred             CCCeEEEEeecCCCCeEEEEec-C-cceee----eeeccCcceE-EEEE-CCCCCEEEEEeCCCcEEEEEECCCCc--ee
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHY-A-SKRTK----FIMAHDSRIA-CFAL-TQDGQLLATSSTKGTLVRIFNTLDGT--LL  294 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~-~-~~~~~----~~~~~~~~i~-~v~~-sp~g~~l~s~~~dg~~i~iwd~~~~~--~~  294 (368)
                      .+...+++.  +.||.+.+.+. . ++...    .+.....++. ...| .++|++++ .+.+|. |.+.|+.+..  .+
T Consensus       187 ~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~v~  262 (386)
T 3sjl_D          187 TAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAKFL  262 (386)
T ss_dssp             EETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCEEC
T ss_pred             CCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcceee
Confidence            332222222  23555444222 2 12111    1111112222 2355 36786554 555788 9999987654  33


Q ss_pred             EeeE--------eccCcccEEEEEEecCCCEEEEEeC----------CCeEEEEEccCCCCCC
Q 017642          295 QEVR--------RGADRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSA  339 (368)
Q Consensus       295 ~~~~--------~~~~~~~v~~l~~sp~~~~l~s~s~----------dg~i~iwd~~~~~~~~  339 (368)
                      ..+.        .+...+....++++++++.|+....          .+.|.++|+.+.+...
T Consensus       263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~  325 (386)
T 3sjl_D          263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA  325 (386)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred             cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence            3332        1111234455788999998877642          2579999999887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=3.5e-07  Score=76.29  Aligned_cols=191  Identities=10%  Similarity=-0.042  Sum_probs=126.2

Q ss_pred             CEEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ....++|++++.++++.+   ++.|+++|+.+++......+  ........+.+.++.++.++.. +     +.+.++|.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~g~~lyv~t~~-~-----~~v~viD~   93 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTLLNEKLYQVVWL-K-----NIGFIYDR   93 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEETT-C-----SEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEEeCCEEEEEEec-C-----CEEEEEEC
Confidence            357899999876555543   35699999998877655444  2333344567777766666643 3     89999999


Q ss_pred             CCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCC-----CeeEEEEecCCCeEEEEeec
Q 017642          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~g  235 (368)
                      .+.+.+.++... .-....+++|+..++   .++.|.++|.++.+.+..+.....     ..+.+.+. ++ .+++.  .
T Consensus        94 ~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn--~  168 (266)
T 2iwa_A           94 RTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWAN--I  168 (266)
T ss_dssp             TTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEE--E
T ss_pred             CCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEe--c
Confidence            999999998754 112344566766554   467899999999988888764321     24566777 55 44433  2


Q ss_pred             CCCCeEEE-EecCcceeeeeecc-------------CcceEEEEECCCCCEEE-EEeCCCcEEEEEECCCC
Q 017642          236 LQKGQVRV-EHYASKRTKFIMAH-------------DSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       236 ~~dg~i~i-~~~~~~~~~~~~~~-------------~~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd~~~~  291 (368)
                      ..++.|.+ +..+++.+..+...             ......|+|+|+++.|+ ++...+. |.+.++...
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~  238 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV  238 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence            34566666 66666666665421             13568999999987554 5555666 777776543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.00  E-value=3.9e-07  Score=75.17  Aligned_cols=186  Identities=10%  Similarity=0.072  Sum_probs=124.9

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeE--EEEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~--~d~~i~  197 (368)
                      ..+.+........+.|+.+.++..++..      |.|+++|+++++.+..+ .......  +++..+..+++  .++.+.
T Consensus        47 ~~~phd~~~ftqGL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           47 REYPHATNAFTQGLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEECCTTCCEEEEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEcCCCccccceEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence            3444455566677888876655555544      78999999999988887 5555544  55555544555  489999


Q ss_pred             EEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec-Ccceeeeeec--cC---cceEEEEECCCCC
Q 017642          198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKRTKFIMA--HD---SRIACFALTQDGQ  271 (368)
Q Consensus       198 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~-~~~~~~~~~~--~~---~~i~~v~~sp~g~  271 (368)
                      +||.++++.+.++......   ..++++++.+++. .|  ++.|.+.+. +.+.+..+..  +.   ..++.+.|. +|+
T Consensus       120 V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vS-dG--s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRS-DG--GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             EEETTTTEEEEEEECSSCC---CCEEEETTEEEEE-CS--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECCcCcEEEEEeCCCce---eEEecCCCEEEEE-CC--CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence            9999999999998754322   3444678765543 23  678888554 4455555443  22   235667776 776


Q ss_pred             EEEEEeCCCcEEEEEECCCCceeEeeEecc-----------CcccEEEEEEecCCCEEEEEe
Q 017642          272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       272 ~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      +++..-.+.. |.+.|.++++.+..+....           ...-.+.|+|+|+++.|++.+
T Consensus       193 lyanvw~s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          193 IYANIWHSSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEETTCSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            5555545667 9999999999988877420           113568999999876555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.98  E-value=8.6e-07  Score=76.96  Aligned_cols=236  Identities=9%  Similarity=0.027  Sum_probs=140.8

Q ss_pred             EEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEccc----------------CCceeEEEEEEeC-CeEEEEecCC
Q 017642           88 LLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFER----------------GGGIGVVEMLFRC-NILALVGGGP  149 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~~~~~~s~~~  149 (368)
                      ..+++|.++|+++.++. ++.|..|+.+............                ........+++++ ++.++++...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            45678899998666666 6778888866433221110000                0012467788886 5655555333


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEEee-CccEEEeC--------------------CcEEEEEcCC
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRR-DRIIVVLE--------------------QKIFVYNFAD  203 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~d--------------------~~i~vwd~~~  203 (368)
                            +.|..+|..+++......     .......+++.+ +|.+.+.|                    +.|..||..+
T Consensus       101 ------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A          101 ------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             ------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             ------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence                  458888876554222111     113468899999 88877732                    5688899877


Q ss_pred             CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc---eeeeeeccCcceEEEEECCCCCEEEEEeC--
Q 017642          204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST--  278 (368)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~---~~~~~~~~~~~i~~v~~sp~g~~l~s~~~--  278 (368)
                      ++....... ......++++++++.++++-  ...+.|.+++..+.   ....+....+ ...++++++|+++++...  
T Consensus       175 ~~~~~~~~~-~~~p~gia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          175 KETTLLLKE-LHVPGGAEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             TEEEEEEEE-ESCCCEEEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred             CEEEEeccC-CccCcceEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence            765433322 22345689999998766653  24567777555431   1222222223 788999999996666544  


Q ss_pred             --------CCcEEEEEECCCCceeEeeEeccC--cccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          279 --------KGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       279 --------dg~~i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                              .+. |..+|. .++.+..+.....  -..+..+++ .+++++++....+.|.++++....
T Consensus       251 ~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          251 DGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             TSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             cccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                    456 888885 5777766664210  134666766 466666665678889999986443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=3.4e-08  Score=86.75  Aligned_cols=200  Identities=10%  Similarity=0.001  Sum_probs=125.4

Q ss_pred             eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--------cCCceeEEEEeeCccEEEe--------C
Q 017642          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVVL--------E  193 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~--------d  193 (368)
                      .....+++++++.++++....   .++.++||.+.+++. ..+.        +-..+..+++++++++++.        +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCC---CCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            456778888887777764310   013244554445543 3221        3357899999999987763        3


Q ss_pred             CcEEEEEcCCCeEEEEEeccC------CCeeEEEEecCCCeEEEEeec-CCCCeEEEEecCc-ceeeeeecc--------
Q 017642          194 QKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYAS-KRTKFIMAH--------  257 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~l~~~g-~~dg~i~i~~~~~-~~~~~~~~~--------  257 (368)
                      +.|.+||+.+++.++.+....      .....+++.+++..++++-.+ ..++.|.+++... +....+..|        
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            689999999998777765321      235778999876665554311 0467787776543 332222221        


Q ss_pred             ---------------------CcceEEEEECCCCCEEEEEeCCCcEEEEEECC---CCc-----eeE--eeEeccCcccE
Q 017642          258 ---------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTL---DGT-----LLQ--EVRRGADRAEI  306 (368)
Q Consensus       258 ---------------------~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~---~~~-----~~~--~~~~~~~~~~v  306 (368)
                                           ...+..|+|+|+|+.|+.+..++..|..++..   .+.     ...  ...+  +.+..
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~~g~p  250 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS--EKPIC  250 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE--ECCSC
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc--cCCCC
Confidence                                 12368899999999888888777525555432   111     011  1111  23345


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      ..++++++|.++++...++.|.+||.+++
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence            67999999999998888999999998444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.95  E-value=1.8e-10  Score=102.40  Aligned_cols=168  Identities=12%  Similarity=0.015  Sum_probs=92.7

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCC-ee-EEEEecCCCeEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANP-KG-LCAVSQGVGSLV  230 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~-v~-~~~~~~~~~~~~  230 (368)
                      +.|+.||..+|+.+..+.. +.+.+..+..++.+++   .|+.|+.||.++|+.+..+..+... +. ...+. ++..  
T Consensus        19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~--   94 (369)
T 2hz6_A           19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGI--   94 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC--------
T ss_pred             CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCE--
Confidence            8999999999999988876 5666665666775544   5899999999999877665432111 11 11111 2232  


Q ss_pred             EEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEE
Q 017642          231 LVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (368)
                      ++ .|+.++.++.++.. ++.+..+..+.    ...++|++..|++++.|+. |+.||.++|+.+..+....    ....
T Consensus        95 v~-~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~~----~~~~  164 (369)
T 2hz6_A           95 LY-MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWNATYFD----YAAS  164 (369)
T ss_dssp             CC-CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCEEEEEE----ECCB
T ss_pred             EE-EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEeEeccc----ccCc
Confidence            22 36678888887655 55555554443    2345678888999999999 9999999999877665321    1223


Q ss_pred             EEecCC---CEEEEEeCCCeEEEEEccCCCC
Q 017642          310 AFSSNA---QWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       310 ~~sp~~---~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      .+..+.   ..+++++.||.|+.||.++++.
T Consensus       165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             CCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             cccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            344432   4566788899999999988865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=1.6e-06  Score=76.96  Aligned_cols=223  Identities=10%  Similarity=0.077  Sum_probs=132.9

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccC-------CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERG-------GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      +..|.+++ ++.|..||.++++......+...       ............+.+++.+.  +     +.|..+|..+|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--~-----g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--K-----AQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET--T-----SEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC--C-----CEEEEEECCCCCE
Confidence            44555555 77899999888877766554210       11122334444555544443  2     8999999999999


Q ss_pred             EEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCe-----eEEEEecCCCeEEEEeecCCCCeE
Q 017642          169 IGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       169 ~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~~~g~~dg~i  241 (368)
                      +..+.....+.......++.+++  .++.|+.+|.++|+.+..+.......     ....+.  +..++  + +..++.+
T Consensus       126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~--~-g~~~g~l  200 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV--V-GGDNGRV  200 (376)
T ss_dssp             EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEE--E-CCTTTEE
T ss_pred             EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEE--E-EcCCCEE
Confidence            88777443333222223555555  58899999999999888775432211     122222  23322  2 5567877


Q ss_pred             EEEec-CcceeeeeeccCc----ceEE---EEECC--CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          242 RVEHY-ASKRTKFIMAHDS----RIAC---FALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       242 ~i~~~-~~~~~~~~~~~~~----~i~~---v~~sp--~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      ..++. +++.+........    .+..   +.-.|  .+..++.++.++. |..+|..+++.+.....    .....+..
T Consensus       201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~----~~~~~~~~  275 (376)
T 3q7m_A          201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKREL----GSVNDFIV  275 (376)
T ss_dssp             EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECC----CCEEEEEE
T ss_pred             EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccC----CCCCCceE
Confidence            77554 4554444332110    0000   00111  2456777888888 99999999998866553    22344443


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          312 SSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                        ++..|+.++.++.|..+|..+++..
T Consensus       276 --~~~~l~~~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          276 --DGNRIYLVDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             --ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred             --ECCEEEEEcCCCeEEEEECCCCcEE
Confidence              3567777888999999999888753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.94  E-value=5.4e-10  Score=99.27  Aligned_cols=183  Identities=13%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEec
Q 017642           96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF  174 (368)
Q Consensus        96 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~  174 (368)
                      ++..|++++ |+.|+.||..+++.......     ..+.+.....++..++.++.|     +.|+.||..+|+.+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPF   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeec
Confidence            466777777 88899999988887755443     112222222345445555555     9999999999987766642


Q ss_pred             C--Ccee-EEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-c
Q 017642          175 R--SEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-S  248 (368)
Q Consensus       175 ~--~~v~-~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~  248 (368)
                      .  ..+. ...+..++.+++  .++.|+.||.++|+.+..+..+.    ...++|+++.+++   ++.++.|+.|+.. +
T Consensus        78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~---~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYL---GRTEYTITMYDTKTR  150 (369)
T ss_dssp             CHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEE---EEEEEEEECCCSSSS
T ss_pred             cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEE---EecCCEEEEEECCCC
Confidence            1  1111 111113444443  58899999999999888776543    2345566654333   4568888887754 4


Q ss_pred             ceeeeeeccCcceEEEEECCCC---CEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          249 KRTKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       249 ~~~~~~~~~~~~i~~v~~sp~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      +.+..+..+.  .....+..+.   ..+++++.||. |+.||..+|+.+..+.
T Consensus       151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQN  200 (369)
T ss_dssp             SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEE
T ss_pred             CEEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEec
Confidence            4444433221  1223334332   45677888999 9999999999877765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.91  E-value=1.6e-07  Score=80.96  Aligned_cols=196  Identities=9%  Similarity=-0.038  Sum_probs=121.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEE-EcccCCceeEEEEEEeCCeEEEEec----CCC-----
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRCNILALVGG----GPD-----  150 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~----~~d-----  150 (368)
                      ..+...+..++++++|+++++.. +++|.+|+.+ ++..... .........+.++.+++++.++++.    ..+     
T Consensus        82 ~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A           82 LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred             eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence            34556789999999999776655 5679999865 3322111 1110011224467888888777752    110     


Q ss_pred             ---CCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eC------CcEEEEEcCCCeEE--EEE-eccCC
Q 017642          151 ---PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LE------QKIFVYNFADLKLL--HQI-ETIAN  215 (368)
Q Consensus       151 ---~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d------~~i~vwd~~~~~~~--~~~-~~~~~  215 (368)
                         .....+.|..||..+++..... .......++|+||++.+.   ..      +.|++||+..+...  ..+ .....
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             ccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence               0001156888887777654443 445568899999998554   22      68999998755411  111 11223


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                      ....+++.++|+ ++++   ..+ .|.+++.+++.+..+..+. .+.+++|.++++.|+.++.++  +..++
T Consensus       240 ~pdgi~~d~~G~-lwv~---~~~-gv~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~--l~~~~  303 (305)
T 3dr2_A          240 LPDGFCVDRGGW-LWSS---SGT-GVCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC--LWMLP  303 (305)
T ss_dssp             CCCSEEECTTSC-EEEC---CSS-EEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE--EEEEE
T ss_pred             CCCeEEECCCCC-EEEe---cCC-cEEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe--EEEEE
Confidence            345688888887 3332   234 4777888887777776555 588999999998888877765  44444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.89  E-value=1.5e-06  Score=77.27  Aligned_cols=190  Identities=12%  Similarity=0.081  Sum_probs=121.7

Q ss_pred             CeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEEe-------cC-CceeEEEEeeCccEEE--eC------CcEEEE
Q 017642          140 NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-------FR-SEVRSVKLRRDRIIVV--LE------QKIFVY  199 (368)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-------~~-~~v~~~~~~~~~~~l~--~d------~~i~vw  199 (368)
                      ...+++.+..+     +.|.++|+.+.    +.+++++       .. ..-..+.+.|+|.++.  .+      +.|.++
T Consensus        95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEE
T ss_pred             CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEE
Confidence            34455666665     89999998765    6666662       11 2456778889993333  23      689999


Q ss_pred             EcCCCeEEEEEeccCCC---eeEEEEecCCCeEEEEeec----------------CCCCeEEEEecCcc-eeeeeecc--
Q 017642          200 NFADLKLLHQIETIANP---KGLCAVSQGVGSLVLVCPG----------------LQKGQVRVEHYASK-RTKFIMAH--  257 (368)
Q Consensus       200 d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~~~g----------------~~dg~i~i~~~~~~-~~~~~~~~--  257 (368)
                      |.++++.+.++.....+   -..+.|+|+++.++..--|                .....|.+|+.... .+.++...  
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            99999999888643222   2347789999853321000                23688999887654 34444431  


Q ss_pred             CcceEEEEE--CCCCCEEEEEeC------CCcEEEEEECCCCce--eEeeEeccC----------------cccEEEEEE
Q 017642          258 DSRIACFAL--TQDGQLLATSST------KGTLVRIFNTLDGTL--LQEVRRGAD----------------RAEIYSLAF  311 (368)
Q Consensus       258 ~~~i~~v~~--sp~g~~l~s~~~------dg~~i~iwd~~~~~~--~~~~~~~~~----------------~~~v~~l~~  311 (368)
                      ......|.|  +|++++++++++      ++. |.+|....++.  .+.+.....                ......|.+
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence            123456656  999998887775      445 87776554421  111110000                134678999


Q ss_pred             ecCCCEEEEEe-CCCeEEEEEccCC
Q 017642          312 SSNAQWLAVSS-DKGTVHVFNLKVN  335 (368)
Q Consensus       312 sp~~~~l~s~s-~dg~i~iwd~~~~  335 (368)
                      |+||++|.++. ..+.|.+||+...
T Consensus       329 S~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          329 SLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             CTTSCEEEEEETTTTEEEEEECSST
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCC
Confidence            99999998776 4689999999744

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.86  E-value=4.1e-06  Score=69.12  Aligned_cols=184  Identities=8%  Similarity=0.049  Sum_probs=121.2

Q ss_pred             EEEEEEcCCCCEEEEEe-CC--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDHGCFAAGT-DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...+.|+ ++.++.+.+ ++  .|+++|+++++......+  ........+....+.++.++...      +.+.+||..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~------~~v~v~D~~  115 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKN------GLGFVWNIR  115 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSS------SEEEEEETT
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEeeC------CEEEEEECc
Confidence            4778898 666555555 54  599999998887765555  33444455667788777776543      899999999


Q ss_pred             CCcEEEEEecCCceeEEEEeeCccEEE-eC--CcEEEEEcCCCeEEEEEeccC-----CCeeEEEEecCCCeEEEEeecC
Q 017642          165 QSRCIGELSFRSEVRSVKLRRDRIIVV-LE--QKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d--~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +.+.+.++.....-..++  +|+..++ +|  +.|.++|.++.+.+..+....     ..++.+.+. +| .+++..  .
T Consensus       116 t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~--w  189 (262)
T 3nol_A          116 NLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANV--W  189 (262)
T ss_dssp             TCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE--T
T ss_pred             cCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEE--c
Confidence            999999998544333444  5665555 44  569999999998888875432     223346665 55 444332  3


Q ss_pred             CCCeEEE-EecCcceeeeeecc------------CcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          237 QKGQVRV-EHYASKRTKFIMAH------------DSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       237 ~dg~i~i-~~~~~~~~~~~~~~------------~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      .+..|.+ +..+++.+..+...            ....+.|+|+|+++.|+..+..--  ++|.+
T Consensus       190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp--~~~ev  252 (262)
T 3nol_A          190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP--KVFEI  252 (262)
T ss_dssp             TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS--EEEEE
T ss_pred             cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC--ceEEE
Confidence            4556655 65566655554321            235689999999988887776654  55543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=3.3e-06  Score=74.88  Aligned_cols=218  Identities=11%  Similarity=0.037  Sum_probs=130.8

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecC
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR  175 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  175 (368)
                      +..+.+++ ++.|..+|.++++......+. .. . ........+ .+++... +     +.|..+|..+|+.+..+...
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~-~-~~~p~~~~~-~v~v~~~-~-----g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GE-A-LSRPVVSDG-LVLIHTS-N-----GQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECS-SC-C-CSCCEEETT-EEEEECT-T-----SEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCC-Cc-e-EcCCEEECC-EEEEEcC-C-----CeEEEEECCCCcEEEEEeCC
Confidence            44555555 778999999888877655542 11 1 111122333 3444333 3     89999999999998887743


Q ss_pred             Cce------eEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCC----------e-eEEEEecCCCeEEEEeecC
Q 017642          176 SEV------RSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       176 ~~v------~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~~~g~  236 (368)
                      ..+      ...... ++.+++  .++.|..+|.++|+.+.........          + ....+  .+..+++   ++
T Consensus       173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~---~~  246 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFA---LA  246 (376)
T ss_dssp             C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEE---EC
T ss_pred             CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEE---Ee
Confidence            333      222222 555555  4789999999999988776532110          1 11111  2333332   34


Q ss_pred             CCCeEEEEec-CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          237 QKGQVRVEHY-ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       237 ~dg~i~i~~~-~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      .++.+..++. +++.+....  ......+..  ++..|+.++.++. |..+|..+++.+...... ....+.....  .+
T Consensus       247 ~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~  318 (376)
T 3q7m_A          247 YNGNLTALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YN  318 (376)
T ss_dssp             TTSCEEEEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ET
T ss_pred             cCcEEEEEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--EC
Confidence            5777777554 455443332  223344444  4567788888888 999999999987666521 1122223333  24


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCC
Q 017642          316 QWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ..|+.++.+|.|+++|.++++..
T Consensus       319 ~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          319 GNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEE
Confidence            67888889999999999988754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=2e-06  Score=79.17  Aligned_cols=173  Identities=12%  Similarity=0.054  Sum_probs=118.6

Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEE-e-eCccEEE-e--------------------CCcEEEEEcCCCeEEEEE
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKL-R-RDRIIVV-L--------------------EQKIFVYNFADLKLLHQI  210 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~l~-~--------------------d~~i~vwd~~~~~~~~~~  210 (368)
                      +.|.+.|+.+.++...+.  .......+++ + |++.+++ .                    ++.+.++|..+++...++
T Consensus       112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI  191 (595)
T 1fwx_A          112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV  191 (595)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence            789999999999888555  4567889998 4 8888776 2                    247999999999998888


Q ss_pred             eccCCCeeEEEEecCCCeEEEEeecCCC------------Ce-----------------------EEEEecCc---ce-e
Q 017642          211 ETIANPKGLCAVSQGVGSLVLVCPGLQK------------GQ-----------------------VRVEHYAS---KR-T  251 (368)
Q Consensus       211 ~~~~~~v~~~~~~~~~~~~~l~~~g~~d------------g~-----------------------i~i~~~~~---~~-~  251 (368)
                      .... .-..++++++|+..++.+-.+..            ..                       |.+.+...   .. +
T Consensus       192 ~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~  270 (595)
T 1fwx_A          192 LVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT  270 (595)
T ss_dssp             EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE
T ss_pred             EeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE
Confidence            6544 34558899999987665522211            11                       22211111   11 1


Q ss_pred             eeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCc------------eeEeeEeccCcccEEEEEEecCCCEE
Q 017642          252 KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT------------LLQEVRRGADRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~------------~~~~~~~~~~~~~v~~l~~sp~~~~l  318 (368)
                      ..+.. .....++.++|||+++++++. +.. |.++|+.+.+            .+.++..   ......++|+++|...
T Consensus       271 ~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG~aY  345 (595)
T 1fwx_A          271 RYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRGNAY  345 (595)
T ss_dssp             EEEEE-ESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTSEEE
T ss_pred             EEEec-CCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCCeEE
Confidence            12221 123467899999997776664 566 9999998653            3444443   3467899999999444


Q ss_pred             EEEeCCCeEEEEEccC
Q 017642          319 AVSSDKGTVHVFNLKV  334 (368)
Q Consensus       319 ~s~s~dg~i~iwd~~~  334 (368)
                      ++.-.|+.|.+||+++
T Consensus       346 ~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          346 TSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEETTTTEEEEEEHHH
T ss_pred             EEEecCCcEEEEEhhH
Confidence            4556899999999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.83  E-value=1.2e-06  Score=78.48  Aligned_cols=201  Identities=18%  Similarity=0.108  Sum_probs=122.8

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccCC----ceeEEEEEEeCCeEEEEecC--CCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGG--PDPQ  152 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~--~d~~  152 (368)
                      .++++|||++|+++.           ++.|.++|..+.+......+....    ...-..+.+++++..++.+.  .+  
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~--  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA--  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS--
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC--
Confidence            789999999887764           345999998877665443331000    11223567777775554432  23  


Q ss_pred             CCCCcEEEEeCCCCcEEEEEecCCc--------eeEEEEeeCccEEE---------------------------------
Q 017642          153 YPLNKVMIWDDHQSRCIGELSFRSE--------VRSVKLRRDRIIVV---------------------------------  191 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~---------------------------------  191 (368)
                         +.|.+.|+.+++.+.++...+.        -.-+.++++|++++                                 
T Consensus       200 ---~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg  276 (426)
T 3c75_H          200 ---PAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS  276 (426)
T ss_dssp             ---CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred             ---CeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence               7899999999998888763221        11133444444332                                 


Q ss_pred             -------eCCcEEEEEcCCCeEE--EEEec----------cCCCeeEEEEecCCCeEEEEeecC-------CCCeEEE-E
Q 017642          192 -------LEQKIFVYNFADLKLL--HQIET----------IANPKGLCAVSQGVGSLVLVCPGL-------QKGQVRV-E  244 (368)
Q Consensus       192 -------~d~~i~vwd~~~~~~~--~~~~~----------~~~~v~~~~~~~~~~~~~l~~~g~-------~dg~i~i-~  244 (368)
                             ..+.|.+.|+......  ..+..          .......++++++++.++++....       ..+.|.+ +
T Consensus       277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID  356 (426)
T 3c75_H          277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN  356 (426)
T ss_dssp             CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence                   1233444444322210  11100          001112378899999877764211       1346777 4


Q ss_pred             ecCcceeeeeeccCcceEEEEECCCCC-EEEEEe-CCCcEEEEEECCCCceeEee
Q 017642          245 HYASKRTKFIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~-~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ..+.+.+..+.... ....|+|+|||+ ++++.. .++. |.|+|+.+++.+.++
T Consensus       357 ~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~-VsVID~~t~kvv~tI  409 (426)
T 3c75_H          357 AETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQT-LHIYDAATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEE
T ss_pred             CCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCe-EEEEECCCCCEEEEe
Confidence            45556666665322 478999999999 888888 4788 999999999999887

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=7.1e-06  Score=80.38  Aligned_cols=235  Identities=11%  Similarity=0.153  Sum_probs=147.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      |.++...++|.+.+...++++..|+....+..  ..........+.++..+.++.+.++...      +.|.+||..+++
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFE--KVIPILGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEE--ECC----CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEE--EecCCCCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCe
Confidence            88888888887666433568999986654322  1111122345677777666655555432      459999987765


Q ss_pred             EEEEEe--------cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEec-------cCCCeeEEEEecCCCeEEE
Q 017642          168 CIGELS--------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET-------IANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       168 ~~~~~~--------~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l  231 (368)
                      ......        ....|.++...++|.+.+ .++.|.+||..+++.......       ....|.++....+|. +.+
T Consensus       247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi  325 (795)
T 4a2l_A          247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL  325 (795)
T ss_dssp             EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE
T ss_pred             EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE
Confidence            433221        135689999998888777 556899999887765433211       224577777777775 333


Q ss_pred             EeecCCCCeEEEEecCcceeeeeec-------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-----
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-----  299 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~~-------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-----  299 (368)
                         |+.++-|..++........+..       ....|.++....+|.+ ..|+.++. |..||..+++...-...     
T Consensus       326 ---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          326 ---GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGG-LNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             ---EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSC-EEEECTTTCCEEEECCC-----
T ss_pred             ---EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCC-eEEEcCCCCcEEEEecCCCCcc
Confidence               3355556665544433332221       2346999999888874 45777767 99999877654422111     


Q ss_pred             -ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          300 -GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       300 -~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                       ......|.++...++|+.|..|+.++.|.+||.++++
T Consensus       401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence             0123579999998899855667777779999987654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.79  E-value=4.6e-05  Score=66.78  Aligned_cols=239  Identities=8%  Similarity=-0.039  Sum_probs=142.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      .+...|.+..+ ..+|+.+..+.|+..+++.....  ..+  ........+.|++ ++.++++....     +.|+.+++
T Consensus        33 ~d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~--~~~--~~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~  102 (349)
T 3v64_C           33 PDRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLL--NNLENAIALDFHHRRELVFWSDVTL-----DRILRANL  102 (349)
T ss_dssp             TTSSCEEESSS-CCEEEEECBSCEEEECTTSCCEE--EEE--CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             CCCCccccccc-CceeEeecccceEEEeCCCCeeE--Eee--cCCCceEEEEEeccccEEEEEeccC-----CceEEEec
Confidence            34455666556 34566666666777776543322  223  2333467788874 44444444433     88999998


Q ss_pred             CCCcEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          164 HQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       164 ~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      ..+.....+. .......+++.+.+ .+.+   ..+.|.+.++........+.........+++.|.+..++++-.+ ..
T Consensus       103 ~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~-~~  181 (349)
T 3v64_C          103 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NT  181 (349)
T ss_dssp             TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS-SS
T ss_pred             CCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC-CC
Confidence            7665444333 33456789998744 4434   35689999986443333333333455779999988776665422 22


Q ss_pred             CeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC
Q 017642          239 GQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       239 g~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~  316 (368)
                      +.|...+.++.....+. ..-.....|++++++..|+.+.. .+. |..+|+..... ..+... .......|++ ..+.
T Consensus       182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~-~~~~~~-~~~~P~giav-~~~~  257 (349)
T 3v64_C          182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHR-KAVISQ-GLPHPFAITV-FEDS  257 (349)
T ss_dssp             CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEECS-SCSSEEEEEE-ETTE
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCce-EEEEeC-CCCCceEEEE-ECCE
Confidence            67777666665444432 23345789999987776665554 455 99999764333 233221 2345677888 3455


Q ss_pred             EEEEEeCCCeEEEEEccCCCCC
Q 017642          317 WLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       317 ~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ++++-...+.|..++..+++..
T Consensus       258 ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          258 LYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEecCCCCeEEEEEccCCCcc
Confidence            5555556778888885555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.79  E-value=1.7e-05  Score=68.21  Aligned_cols=221  Identities=11%  Similarity=0.019  Sum_probs=130.6

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC-CCCCCCCCcEEEEeC
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDD  163 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~~~i~vwd~  163 (368)
                      .....++|+++|+++++.. .+.|..|+.+.. ..  ..+.  .......+++++++.++++.. .+    ...|..+|.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~--~~~~--~~~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ--IHAT--VEGKVSGLAFTSNGDLVATGWNAD----SIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE--EEEE--CSSEEEEEEECTTSCEEEEEECTT----SCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eE--EEEe--CCCCceeEEEcCCCcEEEEeccCC----cceEEEEcC
Confidence            4578899999999766664 666888876532 22  2221  223567788887776555542 21    024777787


Q ss_pred             CCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE-EEEEec---------cCCCeeEEEEecCCCe
Q 017642          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL-LHQIET---------IANPKGLCAVSQGVGS  228 (368)
Q Consensus       164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~-~~~~~~---------~~~~v~~~~~~~~~~~  228 (368)
                      .+++......  .......++..+++..++   .++.|+++|...++. +.....         .......+  +++++.
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            7877544333  222334555556665555   267899999866532 211111         00112334  888887


Q ss_pred             EEEEeecCCCCeEEEEecCc-ce---eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE--eeEeccC
Q 017642          229 LVLVCPGLQKGQVRVEHYAS-KR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EVRRGAD  302 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~-~~---~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~--~~~~~~~  302 (368)
                      ++++-  ...+.|..++... ..   ...+.. ......++++++|+++++....+. |.++|.. ++...  .+..  .
T Consensus       181 lyv~d--~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~--~  253 (306)
T 2p4o_A          181 LYVSN--TEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQ--G  253 (306)
T ss_dssp             EEEEE--TTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGG--T
T ss_pred             EEEEe--CCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeeccc--c
Confidence            66654  3467787765543 11   111111 134567899999988777766778 9999964 65532  2222  2


Q ss_pred             cccEEEEEEe---cCCCEEEEEeCC
Q 017642          303 RAEIYSLAFS---SNAQWLAVSSDK  324 (368)
Q Consensus       303 ~~~v~~l~~s---p~~~~l~s~s~d  324 (368)
                      .....+++|.   +|++.|+.++..
T Consensus       254 ~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          254 VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cCCceEEEEecccCCCCEEEEECCC
Confidence            2468999998   888877766543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.79  E-value=2e-07  Score=81.04  Aligned_cols=219  Identities=15%  Similarity=0.073  Sum_probs=134.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      .+.++...++|.+ .+++++ +..||. +++.......   ........... ++.++++.. +     +.|..+|.. +
T Consensus        61 ~~~~~~~~~~g~l-~v~t~~-l~~~d~-~g~~~~~~~~---~~~~~~~~~~~-~~~l~v~t~-~-----~~l~~~d~~-g  126 (330)
T 3hxj_A           61 IECRPSIGKDGTI-YFGSDK-VYAINP-DGTEKWRFDT---KKAIVSDFTIF-EDILYVTSM-D-----GHLYAINTD-G  126 (330)
T ss_dssp             EEECCEETTTTEE-CCSSCE-EEEECC-CGGGGGGSCC--------CCEEEE-TTEEEEECT-T-----SEEEEECTT-S
T ss_pred             cccceEEecCCcE-EEecCc-EEEECC-CCcEEEEEEC---CCCcccCceEE-CCEEEEEec-C-----CEEEEEcCC-C
Confidence            4566677667764 445544 777764 3333211111   11111112223 344444332 2     789999988 8


Q ss_pred             cEEEEEe-cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE
Q 017642          167 RCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV  243 (368)
Q Consensus       167 ~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i  243 (368)
                      +....+. ....+.++...+++.+++  .++.|..||.. ++.+..+......+..+.+..++.  +++  ++  +.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v--~t--~~l~~  199 (330)
T 3hxj_A          127 TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYF--GS--DKVYA  199 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEE--ES--SSEEE
T ss_pred             CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEE--Ee--CEEEE
Confidence            7776666 445567777887887777  46899999998 887777765555566666666665  233  33  55666


Q ss_pred             EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC
Q 017642          244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      ++.+++...........+.++...++|. |..++.++. |..+| .+++.+..+..  ....+..+.+.+++. |..++.
T Consensus       200 ~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g-l~~~~-~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~  273 (330)
T 3hxj_A          200 INPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH-LYAIN-PDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSY  273 (330)
T ss_dssp             ECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE-EEEEC-TTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECT
T ss_pred             ECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe-EEEEC-CCCCEeEEeeC--CCCccccceEcCCCe-EEEecC
Confidence            5566666655555556688888888876 455666777 88887 46776666654  233344555655665 556777


Q ss_pred             CCeEEEEEc
Q 017642          324 KGTVHVFNL  332 (368)
Q Consensus       324 dg~i~iwd~  332 (368)
                      +|.|..+|.
T Consensus       274 ~ggl~~~d~  282 (330)
T 3hxj_A          274 DGHLYAINP  282 (330)
T ss_dssp             TCEEEEECT
T ss_pred             CCCEEEECC
Confidence            888988885

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=1.7e-06  Score=81.20  Aligned_cols=232  Identities=6%  Similarity=-0.054  Sum_probs=137.2

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCc--eeEE-EEEEeCCeEEEEecCC-----CCCCCCCcEEEEeCCCCc
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVV-EMLFRCNILALVGGGP-----DPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~s~~~-----d~~~~~~~i~vwd~~~~~  167 (368)
                      +..|++++ ++.+..+|..+++......+. .+.  ..+. ...... +.++++...     +     +.|..+|..+|+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~-----g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVAK-DTVLMGCSGAELGVR-----GAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEET-TEEEEECBCGGGTCC-----CEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEEEC-CEEEEEecCCccCCC-----CEEEEEECCCCc
Confidence            44555565 777999998888877665543 110  0110 111123 344444331     3     899999999999


Q ss_pred             EEEEEecCCce---------------------------------------eEEEEeeCccEE-E-e-C------------
Q 017642          168 CIGELSFRSEV---------------------------------------RSVKLRRDRIIV-V-L-E------------  193 (368)
Q Consensus       168 ~~~~~~~~~~v---------------------------------------~~~~~~~~~~~l-~-~-d------------  193 (368)
                      .+.++......                                       ..+++.++...+ + . +            
T Consensus       188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd  267 (571)
T 2ad6_A          188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence            99887632211                                       124566643333 3 2 1            


Q ss_pred             ----CcEEEEEcCCCeEEEEEeccCC------CeeE---EEEecCCCeEEEEeecCCCCeEEEEe-cCcceeeeeeccC-
Q 017642          194 ----QKIFVYNFADLKLLHQIETIAN------PKGL---CAVSQGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMAHD-  258 (368)
Q Consensus       194 ----~~i~vwd~~~~~~~~~~~~~~~------~v~~---~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~-  258 (368)
                          +.|..+|.++|+.+..++....      .+..   +....+|+...+++.++.+|.+++.+ .+++.+....... 
T Consensus       268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence                2599999999999888764211      1111   22234664211222256788888844 4555444332110 


Q ss_pred             ------------cce--------------------------EEEEECCCCCEEEEEe-----------------------
Q 017642          259 ------------SRI--------------------------ACFALTQDGQLLATSS-----------------------  277 (368)
Q Consensus       259 ------------~~i--------------------------~~v~~sp~g~~l~s~~-----------------------  277 (368)
                                  .++                          ..++++|+..+|+...                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        111                          2357888777666543                       


Q ss_pred             --------------CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       278 --------------~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                                    .+|. |..||+.+++.+.++...   ..+....+...+..++.++.||.|+.||.++++..-
T Consensus       428 ~~~~~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEEEEECTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceeccCccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence                          3467 999999999988877642   233333334456677778999999999999988653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.77  E-value=2.3e-05  Score=64.09  Aligned_cols=185  Identities=9%  Similarity=0.012  Sum_probs=119.3

Q ss_pred             CEEEEEEcCCCCEEEEEe-C--CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQDHGCFAAGT-D--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      -...+.|+. +.++.+.+ +  ..|+++|+++++......+  ........+....+.++.++...      +.+.+||.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw~~------~~v~v~D~   92 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV--PPPYFGAGIVAWRDRLIQLTWRN------HEGFVYDL   92 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSS------SEEEEEET
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC--CCCcceeEEEEeCCEEEEEEeeC------CEEEEEEC
Confidence            456889986 55444444 3  3599999998887766555  33334455666777777776443      89999999


Q ss_pred             CCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC-----CCeeEEEEecCCCeEEEEeec
Q 017642          164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       164 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      .+.+.+.++.....-..++  +++..++   .++.|.++|.++.+.+..+....     ..++.+.+. +| .++... -
T Consensus        93 ~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanv-w  167 (243)
T 3mbr_X           93 ATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANV-W  167 (243)
T ss_dssp             TTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE-T
T ss_pred             CcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEE-C
Confidence            9999999999555445555  4554444   35689999999998888876432     123444544 44 444332 2


Q ss_pred             CCCCeEEE-EecCcceeeeeec-------------cCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          236 LQKGQVRV-EHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       236 ~~dg~i~i-~~~~~~~~~~~~~-------------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                       .+..|.+ +..+++.+..+..             ...-.+.|+++|+++.|+..+..--  ++|.+
T Consensus       168 -~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp--~~~~v  231 (243)
T 3mbr_X          168 -LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP--MLYEI  231 (243)
T ss_dssp             -TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS--EEEEE
T ss_pred             -CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC--cEEEE
Confidence             2345544 6666666555431             1235689999998887777766543  55543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.76  E-value=2.6e-06  Score=81.67  Aligned_cols=179  Identities=12%  Similarity=0.105  Sum_probs=114.9

Q ss_pred             cEEEEeCCCCcEEEEEec--C--------CceeEEEEeeCc---cEEE---eCCcEEEEEcCCCeEEEEEeccCCC----
Q 017642          157 KVMIWDDHQSRCIGELSF--R--------SEVRSVKLRRDR---IIVV---LEQKIFVYNFADLKLLHQIETIANP----  216 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~--~--------~~v~~~~~~~~~---~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~----  216 (368)
                      .|..+|..+|+.+..++.  .        .....+....+|   ..++   .+|.|+++|.++|+.+..+......    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            599999999999988872  1        122233344466   3444   5899999999999988766422100    


Q ss_pred             -------e------------------------eEEEEecCCCeEEEEee--------------cC---------------
Q 017642          217 -------K------------------------GLCAVSQGVGSLVLVCP--------------GL---------------  236 (368)
Q Consensus       217 -------v------------------------~~~~~~~~~~~~~l~~~--------------g~---------------  236 (368)
                             +                        ..++++|+...+++...              |.               
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                   0                        14677888776555321              00               


Q ss_pred             -----------CCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642          237 -----------QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       237 -----------~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                                 ..|.|..|+... +.+..+. +..++....+..++.+++.++.||. +++||.++++.+..+... +..
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG~~lw~~~~~-~~~  520 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTG-TGV  520 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECS-SCC
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCc-EEEEECCCCceeeeeeCC-CCc
Confidence                       125677666554 4443433 3334444456667888888999999 999999999999998864 222


Q ss_pred             cEEEEEEecCCCEEEEE-eC----------------CCeEEEEEccCCCCC
Q 017642          305 EIYSLAFSSNAQWLAVS-SD----------------KGTVHVFNLKVNSGS  338 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~-s~----------------dg~i~iwd~~~~~~~  338 (368)
                      ...-+.|..+|+.+++. +.                .+.+.+|.+......
T Consensus       521 ~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a~~  571 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARM  571 (677)
T ss_dssp             CSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCCC
T ss_pred             ccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccccccc
Confidence            33446677888755433 22                368899998754333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.75  E-value=7.4e-05  Score=64.48  Aligned_cols=227  Identities=9%  Similarity=-0.076  Sum_probs=135.8

Q ss_pred             EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCC----CcEEEEEe
Q 017642           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS  173 (368)
Q Consensus        99 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~----~~~~~~~~  173 (368)
                      +|+.+..+.|+..+++..+..  ..+  ........+.|++ ++.++++....     +.|..+++..    ......+.
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~--~~~--~~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYT--SLI--PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCE--EEE--CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEEC
T ss_pred             EEEEECCCeEEEEECCCcceE--ehh--cCCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEe
Confidence            566666677999998765433  223  2334466788875 34444444443     8999999875    22222232


Q ss_pred             -cCCceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642          174 -FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (368)
Q Consensus       174 -~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~  248 (368)
                       .-.....+++.+. +.+.+   ..+.|.++|+........+.........+++.|.+..++++-.+ ..+.|...+.++
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG  152 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG  152 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC
Confidence             2245688999864 44433   36789999986543333333333456779999988776665422 236777766666


Q ss_pred             ceeeeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCCEEEEEeCCC
Q 017642          249 KRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       249 ~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      .....+. ..-.....|++++++..|+.+.. .+. |..+|+.. .....+... ........|++. .+.++++-...+
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            5444432 23345789999988776666554 456 99999864 333333321 112346778885 355555656678


Q ss_pred             eEEEEEccCCCCC
Q 017642          326 TVHVFNLKVNSGS  338 (368)
Q Consensus       326 ~i~iwd~~~~~~~  338 (368)
                      .|..++..+++..
T Consensus       230 ~V~~~~~~~g~~~  242 (316)
T 1ijq_A          230 AIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEEETTTCCCC
T ss_pred             eEEEEeCCCCcce
Confidence            8999987766543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.75  E-value=7.5e-06  Score=67.55  Aligned_cols=178  Identities=8%  Similarity=-0.011  Sum_probs=116.5

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      -...+.|+. +.++.+.+ ++.|+++|+++++..... +  ........+.+.++.++.++...      +.+.+||..+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~g~~Ly~ltw~~------~~v~V~D~~T  125 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASDGERLYQLTWTE------GLLFTWSGMP  125 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEECSSCEEEEESSS------CEEEEEETTT
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEeCCEEEEEEccC------CEEEEEECCc
Confidence            346788873 44444444 667999999998877655 5  34444455677778777776543      8999999999


Q ss_pred             CcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCC-----CeeEEEEecCCCeEEEEeecCC
Q 017642          166 SRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       166 ~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      .+.+.++.....-+.++  +|+..++   .++.|+++|.++.+.+..+.....     .++.+.|. +| .+++..  ..
T Consensus       126 l~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanv--w~  199 (268)
T 3nok_A          126 PQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANI--WH  199 (268)
T ss_dssp             TEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEE--TT
T ss_pred             CcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEE--CC
Confidence            99999998554445555  4555554   356899999999998888754322     23445665 55 444332  33


Q ss_pred             CCeEEE-EecCcceeeeeecc-------------CcceEEEEECCCCCEEEEEeCCC
Q 017642          238 KGQVRV-EHYASKRTKFIMAH-------------DSRIACFALTQDGQLLATSSTKG  280 (368)
Q Consensus       238 dg~i~i-~~~~~~~~~~~~~~-------------~~~i~~v~~sp~g~~l~s~~~dg  280 (368)
                      +..|.+ +..+++.+..+...             ..-.+.|+++|+++.|+..+..-
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W  256 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW  256 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence            556655 65666655554321             13568999999877666655543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=1.6e-06  Score=83.02  Aligned_cols=237  Identities=9%  Similarity=0.045  Sum_probs=140.6

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCC-ceeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-GIGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  173 (368)
                      +..|++++ ++.|..+|.++++........... ...+. ..... ++.+++.......-.++.|..+|..+|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            34566666 888999999888887665542000 00000 01112 3344444321000012889999999999998876


Q ss_pred             c-C-Cc------------------------------eeEEEEeeCccEEE---eCC-------------------cEEEE
Q 017642          174 F-R-SE------------------------------VRSVKLRRDRIIVV---LEQ-------------------KIFVY  199 (368)
Q Consensus       174 ~-~-~~------------------------------v~~~~~~~~~~~l~---~d~-------------------~i~vw  199 (368)
                      . . ..                              ...+++.++...+.   .++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            2 1 10                              11367777655444   233                   49999


Q ss_pred             EcCCCeEEEEEeccC---------CCeeEEEEecCCCeEEEEeecCCCCeEEEEe-cCcceeeeeeccC-----------
Q 017642          200 NFADLKLLHQIETIA---------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMAHD-----------  258 (368)
Q Consensus       200 d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~~-----------  258 (368)
                      |.++|+.+..++...         .+.....+..+++..-+++.++.+|.+++.+ .+++.+.......           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            999999988886421         2222233444665321222367899999854 4455442211100           


Q ss_pred             -cce------------------------EEEEECCCCCEEEEE------------------------------------e
Q 017642          259 -SRI------------------------ACFALTQDGQLLATS------------------------------------S  277 (368)
Q Consensus       259 -~~i------------------------~~v~~sp~g~~l~s~------------------------------------~  277 (368)
                       .++                        ..++++|+..+++..                                    .
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             000                        126777776655531                                    1


Q ss_pred             CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       278 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      .+|. |..||+.+++.+.++..+   .......+...+.+++.++.|+.|++||.++++..
T Consensus       436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            2377 999999999998777652   23444455567888889999999999999998765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.74  E-value=3.4e-05  Score=68.67  Aligned_cols=237  Identities=7%  Similarity=-0.049  Sum_probs=141.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .-.|.+..+ ..+|+.+..+.|+.++++.....  ..+  ........+.|++ ++.++++....     +.|+.+++..
T Consensus        78 ~~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~--~~~--~~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g  147 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLL--NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNG  147 (386)
T ss_dssp             SSCEEECSS-CCEEEEECBSCEEEECTTSCCCE--EEE--CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTS
T ss_pred             CCeECCccc-cceeEeecCccceeeccCCCcEE--EEe--cCCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCC
Confidence            344555555 44666666667888887654332  222  2334467788874 44444444443     8899999876


Q ss_pred             CcEEEEEe-cCCceeEEEEeeCc-cEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642          166 SRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       166 ~~~~~~~~-~~~~v~~~~~~~~~-~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                      ......+. .......+++.+.+ .+.+   ..+.|.+.++........+.........+++.|.+..++++-.+ ..+.
T Consensus       148 ~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~  226 (386)
T 3v65_B          148 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPR  226 (386)
T ss_dssp             CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCE
T ss_pred             CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCE
Confidence            65444333 33456788888744 4333   35688888876443333333333455778999988876665422 2367


Q ss_pred             EEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE
Q 017642          241 VRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       241 i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  318 (368)
                      |...+.++.....+. ..-.....|+|++++..|+.+.. .+. |..+|+..... ..+... .......|++ ..+.++
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~giav-~~~~ly  302 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHR-KAVISQ-GLPHPFAITV-FEDSLY  302 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSC-EEEECS-SCSSEEEEEE-ETTEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCee-EEEEEC-CCCCceEEEE-ECCEEE
Confidence            777666665444432 23345789999987766665554 455 99999764333 233221 2335678888 345555


Q ss_pred             EEEeCCCeEEEEEccCCCCC
Q 017642          319 AVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       319 ~s~s~dg~i~iwd~~~~~~~  338 (368)
                      ++-...+.|..++..+++..
T Consensus       303 ~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          303 WTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEETTTTEEEEEETTTCCSC
T ss_pred             EeeCCCCeEEEEECCCCcce
Confidence            66667788888886555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.72  E-value=0.00013  Score=65.29  Aligned_cols=229  Identities=9%  Similarity=-0.064  Sum_probs=137.7

Q ss_pred             CEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEE
Q 017642           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL  172 (368)
Q Consensus        98 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~  172 (368)
                      .+|+.+..+.|+..+++.....  ..+  ........++|++ ++.++++....     +.|+.+++...    .....+
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~--~~~--~~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~  154 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYT--SLI--PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI  154 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCE--EEE--CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEE
T ss_pred             ceeEEeccceeEEEccCCccee--Eec--cccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEE
Confidence            4666677778888888755433  222  3444567788875 34444443333     78999987652    223333


Q ss_pred             e-cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          173 S-FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       173 ~-~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      . .......+++.. .+.+.+   ..+.|.+.++........+.........+++.|.+..++++-.+ ..+.|...+.+
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~d  233 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  233 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETT
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCC
Confidence            3 445678899987 444444   35789999986554444444334456779999988776665422 34677776666


Q ss_pred             cceeeeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       248 ~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      +.....+. ..-.....|++++++..|+.+.. .+. |..+|+........+.....-....+|++. .+.++++-...+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            65544442 23356789999988777766654 455 999998644333222221112345677773 344555555677


Q ss_pred             eEEEEEccCCCCC
Q 017642          326 TVHVFNLKVNSGS  338 (368)
Q Consensus       326 ~i~iwd~~~~~~~  338 (368)
                      .|..+|..+++..
T Consensus       312 ~V~~~~~~~G~~~  324 (400)
T 3p5b_L          312 AIFSANRLTGSDV  324 (400)
T ss_dssp             SEEEEESSSCCCC
T ss_pred             eEEEEEcCCCCce
Confidence            8888887666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.70  E-value=4.7e-06  Score=80.05  Aligned_cols=190  Identities=13%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCc--------eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~  167 (368)
                      +..|.+++ ++.|..+|..+++............        ..........+.++ +.. .|     +.|..+|..+|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-v~~-~d-----g~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVY-VGV-LD-----GRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEE-EEC-TT-----SEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEE-EEc-cC-----CEEEEEECCCCC
Confidence            34454455 7778888988888776654321100        00011233344433 333 33     899999999999


Q ss_pred             EEEEEecC------CceeEEEEeeCccEEE-e-------CCcEEEEEcCCCeEEEEEeccC-C-----------------
Q 017642          168 CIGELSFR------SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIA-N-----------------  215 (368)
Q Consensus       168 ~~~~~~~~------~~v~~~~~~~~~~~l~-~-------d~~i~vwd~~~~~~~~~~~~~~-~-----------------  215 (368)
                      .+..+...      ..+.+.-.-.++.+++ .       ++.|+.||.++|+.+..+.... .                 
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            98887632      1222111112666666 2       5789999999999988775211 0                 


Q ss_pred             -------------CeeEEEEecCCCeEEEEeecCCCC-------------------eEEEEe-cCcceeeeeec--cC--
Q 017642          216 -------------PKGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEH-YASKRTKFIMA--HD--  258 (368)
Q Consensus       216 -------------~v~~~~~~~~~~~~~l~~~g~~dg-------------------~i~i~~-~~~~~~~~~~~--~~--  258 (368)
                                   ....+++.++.+.+++.   ..++                   .|..++ .+++.+..+..  |.  
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~---~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w  299 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIG---VGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW  299 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEE---CCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEe---CCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence                         01246778877765543   2343                   255544 44555555443  21  


Q ss_pred             -----cceEEEEECCCCC---EEEEEeCCCcEEEEEECCCCceeEee
Q 017642          259 -----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       259 -----~~i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                           .++.......+|+   .|+.++.+|. ++++|.++|+.+...
T Consensus       300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          300 DYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAK  345 (689)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEE
T ss_pred             cccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccc
Confidence                 1222222223665   7889999999 999999999987543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.69  E-value=7e-05  Score=64.64  Aligned_cols=228  Identities=10%  Similarity=-0.029  Sum_probs=135.2

Q ss_pred             EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEE-EEEe-cC
Q 017642           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS-FR  175 (368)
Q Consensus        99 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~-~~  175 (368)
                      +|+.+..+.|+.++++.........+  ........+.|++ ++.++.+....     +.|..+++..+... ..+. .-
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l   78 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGL   78 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECC
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCC
Confidence            56666666799999876542222222  2334566777875 23344443333     78999998765321 1222 33


Q ss_pred             CceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee
Q 017642          176 SEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (368)
Q Consensus       176 ~~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~  251 (368)
                      .....+++.+. +.+.+   ..+.|.++++........+......-..+++.|.+..++++-. ...+.|...+.++...
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~-~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSSR  157 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-SSSCEEEEEETTSCSC
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec-CCCCEEEEEEcCCCCe
Confidence            46778899874 44444   3568999998643322223233345577899988777665432 2356677666666544


Q ss_pred             eeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          252 KFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       252 ~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                      ..+. ..-.....|++++++..|+.+.. .+. |..+|+.... ...+... .......+++.. +.++++-...+.|..
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG~~-~~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTN-RQAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCCCc-eEEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence            4332 22345689999997776666554 455 9999986433 3333321 233567777753 345555556788999


Q ss_pred             EEccCCCCC
Q 017642          330 FNLKVNSGS  338 (368)
Q Consensus       330 wd~~~~~~~  338 (368)
                      ++..+++..
T Consensus       234 ~~~~~G~~~  242 (318)
T 3sov_A          234 CNKYTGEGL  242 (318)
T ss_dssp             EETTTCCSC
T ss_pred             EECCCCCce
Confidence            998777653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.62  E-value=6.5e-05  Score=73.54  Aligned_cols=236  Identities=11%  Similarity=0.067  Sum_probs=147.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc----cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ...|.++...++|.+.+ |++++|.+|+..+..........    .-....+.++..+.++.+.++...      +-|..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~------~Gl~~  334 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYF------GGLNY  334 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESS------SCEEE
T ss_pred             CCeEEEEEEcCCCCEEE-EeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECC------CCeEE
Confidence            45799999998888655 44458999986544322111000    012356888888887766665443      67888


Q ss_pred             EeCCCCcEEEEEe--------cCCceeEEEEeeCccEEE-e-CCcEEEEEcCCCeEEEEEec--------cCCCeeEEEE
Q 017642          161 WDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET--------IANPKGLCAV  222 (368)
Q Consensus       161 wd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~-~-d~~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~  222 (368)
                      |+..++... .+.        ....|.++...++|.+.+ . ++.|..||..+++.......        ....|.++..
T Consensus       335 ~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          335 YHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV  413 (795)
T ss_dssp             ECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred             eCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence            886554432 222        234689999988887776 4 56899999877654333211        1345777777


Q ss_pred             ecCCCeEEEEeecCCCCeEEEEecCcceeeeeec-----cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       223 ~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-----~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ..++..+++.   ..++-+.+++........+..     ....|.++...++|++.+.. .+ . |.+||..+++.....
T Consensus       414 d~~g~~lWig---t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-G-l~~~~~~~~~~~~~~  487 (795)
T 4a2l_A          414 DEKKSLVYIG---THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-A-LVRFNPEQRSFTTIE  487 (795)
T ss_dssp             ETTTTEEEEE---ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-C-EEEEETTTTEEEECC
T ss_pred             cCCCCEEEEE---eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-c-eeEEeCCCCeEEEcc
Confidence            7676524543   344556666655444444331     34579999999888855544 44 4 899998776543221


Q ss_pred             Ee----ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          298 RR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       298 ~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..    ......|.++...++|++.+... + .|..||..+++
T Consensus       488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~  528 (795)
T 4a2l_A          488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLD  528 (795)
T ss_dssp             BCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTE
T ss_pred             ccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCe
Confidence            11    11235789999999998766544 4 48889887654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.60  E-value=3e-05  Score=72.80  Aligned_cols=228  Identities=7%  Similarity=0.006  Sum_probs=132.2

Q ss_pred             EEEEe-CCeEEEEEecCCCcceEEEcccCCc--eeEE-EEEEeCCeEEEEecC-----CCCCCCCCcEEEEeCCCCcEEE
Q 017642          100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVV-EMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIG  170 (368)
Q Consensus       100 l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~s~~-----~d~~~~~~~i~vwd~~~~~~~~  170 (368)
                      |++++ |+.+..+|..+++......+. ...  ..+. .-... ++.+++..+     .+     +.|+.+|.++|+.+.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~-----g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVR-----GYLTAYDVKTGEQVW  196 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCC-----CEEEEEETTTCCEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEE-CCEEEEEecccccCCC-----CeEEEEECCCCcEEE
Confidence            55565 777888888888877665542 110  0110 00112 344444432     23     899999999999988


Q ss_pred             EEecCCce---------------------------------------eEEEEeeCccEEE---eC---------------
Q 017642          171 ELSFRSEV---------------------------------------RSVKLRRDRIIVV---LE---------------  193 (368)
Q Consensus       171 ~~~~~~~v---------------------------------------~~~~~~~~~~~l~---~d---------------  193 (368)
                      .+......                                       ..+++.++..++.   .+               
T Consensus       197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y  276 (599)
T 1w6s_A          197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW  276 (599)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence            87632211                                       1245555444433   22               


Q ss_pred             -CcEEEEEcCCCeEEEEEeccCCCe---------eEEEEe-cCCCeEEEEeecCCCCeEEEEe-cCcceeeeeecc----
Q 017642          194 -QKIFVYNFADLKLLHQIETIANPK---------GLCAVS-QGVGSLVLVCPGLQKGQVRVEH-YASKRTKFIMAH----  257 (368)
Q Consensus       194 -~~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~-~~~~~~~l~~~g~~dg~i~i~~-~~~~~~~~~~~~----  257 (368)
                       +.|..+|.++|+.+..++......         ..+... .+|+..-+++.++.+|.+++.+ .+++.+......    
T Consensus       277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence             379999999999988876532211         112222 4564222222356789888844 455544332210    


Q ss_pred             ---------Ccce--------------------------EEEEECCCCCEEEEEe-------------------------
Q 017642          258 ---------DSRI--------------------------ACFALTQDGQLLATSS-------------------------  277 (368)
Q Consensus       258 ---------~~~i--------------------------~~v~~sp~g~~l~s~~-------------------------  277 (368)
                               ..++                          ..++++|+..++++..                         
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence                     0111                          2356677665554421                         


Q ss_pred             --------------CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       278 --------------~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                                    .+|. |.-||+.+++.+-+....   .++..-.+.-.+.+++.++.|+.|+.||.++++..
T Consensus       437 ~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          437 NMYPGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             EEEECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeccCCcCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence                          3467 999999999988777642   12222122335667777999999999999998864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.55  E-value=0.00022  Score=59.08  Aligned_cols=196  Identities=11%  Similarity=0.085  Sum_probs=121.0

Q ss_pred             CCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEE
Q 017642          127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYN  200 (368)
Q Consensus       127 ~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd  200 (368)
                      +-...+..++++++ +.+++....+     +.|...|.. ++.++.+.  .......+++.+++.+++   .++.+.+++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            44456888888864 3333333334     899999987 88888886  336788999999998866   367899998


Q ss_pred             cCCCe---EEEEEec------cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEec--Ccceeeeee-------ccCcceE
Q 017642          201 FADLK---LLHQIET------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKFIM-------AHDSRIA  262 (368)
Q Consensus       201 ~~~~~---~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~--~~~~~~~~~-------~~~~~i~  262 (368)
                      +....   .+.....      .......+++.+.++.++++. ......|..++-  ....+..+.       .+...+.
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S  176 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS  176 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-CcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence            85433   2222221      223346899999998887765 221213333431  111111111       1234578


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc--C-----cccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--D-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       263 ~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +++++|....|...+.....|.++|. +++.+..+....  +     -..-..|+|.++|++.++ ++.+.+++|.
T Consensus       177 ~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          177 GAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             eEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            99999976655544544443889985 566665555421  1     125689999999985555 6777666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.54  E-value=0.00041  Score=67.23  Aligned_cols=229  Identities=9%  Similarity=-0.069  Sum_probs=134.4

Q ss_pred             CEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCC----cEEEEE
Q 017642           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL  172 (368)
Q Consensus        98 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~----~~~~~~  172 (368)
                      .+|+.+....|+..+++.....  ..+  ........+.++. ++.++++....     +.|+.+++...    .....+
T Consensus       396 p~Ll~an~~~Ir~i~l~~~~~~--~l~--~~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi  466 (791)
T 3m0c_C          396 AYLFFTNRHEVRKMTLDRSEYT--SLI--PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI  466 (791)
T ss_dssp             CEEEEECBSSEEEECTTSCCCE--EEE--CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEE
T ss_pred             cccccccccceeEeeccCCcce--eee--cCCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEE
Confidence            3566666666888777654332  222  2334556777775 34444444333     78999987653    222333


Q ss_pred             e-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          173 S-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       173 ~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      . .-.....|++...+..|.    ..+.|.+.++........+.........|++.|....+|++-.| ..+.|...+.+
T Consensus       467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~d  545 (791)
T 3m0c_C          467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN  545 (791)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT
T ss_pred             ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecC
Confidence            3 445677899987664433    36789999986544333333344456789999988777765422 33677776666


Q ss_pred             cceeeeeec-cCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          248 SKRTKFIMA-HDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       248 ~~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      +.....+.. .-.....|++++.+..|+.+.. .+. |...++........+.....-....+|++.. +.++++-...+
T Consensus       546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            655554433 3356889999987776666654 445 9999985444333333211122345677643 23444444667


Q ss_pred             eEEEEEccCCCCC
Q 017642          326 TVHVFNLKVNSGS  338 (368)
Q Consensus       326 ~i~iwd~~~~~~~  338 (368)
                      .|...+..+++..
T Consensus       624 ~I~~~dk~tG~~~  636 (791)
T 3m0c_C          624 AIFSANRLTGSDV  636 (791)
T ss_dssp             EEEEEETTTCCCC
T ss_pred             EEEEEeCCCCcce
Confidence            7888887676554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.52  E-value=0.00019  Score=61.92  Aligned_cols=174  Identities=9%  Similarity=-0.023  Sum_probs=112.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc-EEE---eCCcEEEEEcCC---CeEEE-EEeccCCCeeEEEEecCCC
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVV---LEQKIFVYNFAD---LKLLH-QIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~---~~~~~-~~~~~~~~v~~~~~~~~~~  227 (368)
                      +.|+..|+...+....+.......+++|++++. +.+   .++.|+.+++..   +.... .+.........+++.+.++
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            579999998877666666666788999998654 333   367899999875   12222 2322223456788988777


Q ss_pred             eEEEEeecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeCC--CcEEEEEECCCCceeEeeEeccCcc
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTK--GTLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~d--g~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      .++++-  ...+.|.+.+.++.....+. ........++++|.+..|+.+...  +. |...++. |.....+... .-.
T Consensus        90 ~ly~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-~~~  164 (316)
T 1ijq_A           90 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ  164 (316)
T ss_dssp             EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred             eEEEEE--CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-CCC
Confidence            766653  34678888666665444433 233567899999866655555443  56 8888874 4444333321 234


Q ss_pred             cEEEEEEecCCCEEEEEe-CCCeEEEEEccC
Q 017642          305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~  334 (368)
                      ....|++++++..|+.+. ..+.|..+|+..
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            678999999877766554 567899999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.48  E-value=0.00016  Score=64.36  Aligned_cols=174  Identities=10%  Similarity=-0.004  Sum_probs=112.9

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ..|+.+++........+.....+..++|.+.+. +++   ..+.|+.+++........+.........+++.+.+..+++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~  175 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  175 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence            579999987766655555566788999997544 444   3678999998766544444333334456889888877666


Q ss_pred             EeecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeC-C-CcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-d-g~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                      +-  ...+.|.+.+.++.....+. ........|+++|.+..|+.... . +. |..+++.... ...+... .-.....
T Consensus       176 ~d--~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~~-~~~~~~~-~~~~PnG  250 (386)
T 3v65_B          176 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSG-RRIIADT-HLFWPNG  250 (386)
T ss_dssp             EE--TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCS-CEEEECS-SCSCEEE
T ss_pred             Ec--CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCCC-cEEEEEC-CCCCeee
Confidence            53  34567777666655443332 23356789999987765555543 3 56 8888875433 3333221 2335789


Q ss_pred             EEEecCCCEEEEE-eCCCeEEEEEccC
Q 017642          309 LAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (368)
Q Consensus       309 l~~sp~~~~l~s~-s~dg~i~iwd~~~  334 (368)
                      |+|+|++..|+.+ ...+.|..+|+..
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            9999877766655 4567899998764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.45  E-value=0.0011  Score=62.60  Aligned_cols=229  Identities=8%  Similarity=-0.062  Sum_probs=139.9

Q ss_pred             CEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cC
Q 017642           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR  175 (368)
Q Consensus        98 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~  175 (368)
                      .+|+.+..+.|+..+++.........+  ..-.....+.|++ ++.++++...+     +.|+.+++........+. .-
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~   79 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPL--TGVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGL   79 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCC--CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEc--CCCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCC
Confidence            466666777899999876543322222  2334567788875 34444444444     899999977554443443 23


Q ss_pred             CceeEEEEeeCccEE-E---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee
Q 017642          176 SEVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l-~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~  251 (368)
                      .....+++...+..+ +   ..+.|.+.++........+......-..+++.|....++++-.| ..+.|...+.++...
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER  158 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCce
Confidence            467889998754433 3   35789999986443222222333445779999877766654322 345666666666555


Q ss_pred             eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      ..+...-.....|+++++++.|+.+......|..+|+..... ..+..  .......|++.. +.++++-...+.|...|
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            554444556789999998776666655433399999865443 33333  223456788765 44444544678888888


Q ss_pred             ccCCCCC
Q 017642          332 LKVNSGS  338 (368)
Q Consensus       332 ~~~~~~~  338 (368)
                      ..+++..
T Consensus       235 k~tg~~~  241 (628)
T 4a0p_A          235 KTSGQNR  241 (628)
T ss_dssp             TTTCCSC
T ss_pred             CCCCCce
Confidence            7776643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.45  E-value=0.00033  Score=61.33  Aligned_cols=174  Identities=11%  Similarity=0.011  Sum_probs=112.1

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      +.|+..++........+.....+..++|++.+..+.    ..+.|+.+++........+.........+++.+.+..+++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~  132 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW  132 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence            568888877665555555556688999997544443    3678999998765443333333334467899988877666


Q ss_pred             EeecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEe-CC-CcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TK-GTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~-~d-g~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                      +-  ...+.|.+.+.++.....+. ..-.....|+++|.+..|+... .. +. |..+++.... ...+... .-.....
T Consensus       133 ~d--~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG~~-~~~~~~~-~~~~PnG  207 (349)
T 3v64_C          133 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSG-RRIIADT-HLFWPNG  207 (349)
T ss_dssp             EE--TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCS-CEESCCS-SCSCEEE
T ss_pred             Ec--CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCCCC-cEEEEEC-CCCCcce
Confidence            53  34667887666665444433 3335578999998666555444 34 66 8888875433 2233211 2345789


Q ss_pred             EEEecCCCEEEEE-eCCCeEEEEEccC
Q 017642          309 LAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (368)
Q Consensus       309 l~~sp~~~~l~s~-s~dg~i~iwd~~~  334 (368)
                      |+|++++..|+.+ ...+.|..+|+..
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            9999877766655 4567899999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.44  E-value=2.2e-05  Score=76.22  Aligned_cols=242  Identities=11%  Similarity=0.019  Sum_probs=124.9

Q ss_pred             CEEEEEEc-CCCCEEEEEeC--C----eEEEEEecCC-CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           87 TLLHISFN-QDHGCFAAGTD--H----GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        87 ~v~~~~~s-~~g~~l~~~~d--~----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      .+...+|| |||++||.+.+  +    .|+++|++++ +.. ...+.    .....+.|++++..|+....+.......|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            67889999 99999987652  1    2899998876 421 11111    11235677777533332222100001368


Q ss_pred             EEEeCCCCc--EEEEEe--cCCceeEEEEeeCccEEE--e----CCcEEEEEcCCCe-EE--EEEe-ccCCCeeEEEEec
Q 017642          159 MIWDDHQSR--CIGELS--FRSEVRSVKLRRDRIIVV--L----EQKIFVYNFADLK-LL--HQIE-TIANPKGLCAVSQ  224 (368)
Q Consensus       159 ~vwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~--~----d~~i~vwd~~~~~-~~--~~~~-~~~~~v~~~~~~~  224 (368)
                      +++++.+++  ....+.  .......+.|+|||++++  .    ...|+++|+.++. ..  ..+. ........+.|+ 
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-
Confidence            888988764  233333  334466789999999887  1    3478999997652 12  3332 222333333332 


Q ss_pred             CCCeEEEEeecC--CCCeEEEEecCc-ceeee-eeccCc--ceEEEEECCCCCEEEEEeCCCc-EEEEEEC-------CC
Q 017642          225 GVGSLVLVCPGL--QKGQVRVEHYAS-KRTKF-IMAHDS--RIACFALTQDGQLLATSSTKGT-LVRIFNT-------LD  290 (368)
Q Consensus       225 ~~~~~~l~~~g~--~dg~i~i~~~~~-~~~~~-~~~~~~--~i~~v~~sp~g~~l~s~~~dg~-~i~iwd~-------~~  290 (368)
                      +++.+++.+...  ....|...+... ..... +..+..  .+..+.+. .+.++++...++. .|.++|+       ..
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~  407 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKA  407 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccC
Confidence            367666654211  123444444442 22233 333333  45566664 2345566666664 1556665       34


Q ss_pred             CceeEeeEeccCcccEEEEEE----ecCCC-EEEEEeCC---CeEEEEEccCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAF----SSNAQ-WLAVSSDK---GTVHVFNLKVNS  336 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~----sp~~~-~l~s~s~d---g~i~iwd~~~~~  336 (368)
                      ++.+..+... ....+..+.+    ++++. ++++.+..   ..++.+|+.+++
T Consensus       408 g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          408 GTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            4313333321 1122334433    34554 44444332   457777776554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00028  Score=68.92  Aligned_cols=236  Identities=11%  Similarity=0.047  Sum_probs=140.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc----cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEE
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI  160 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~v  160 (368)
                      ...|.++...++|.+.+. +++++.+||..+.+......-.    ......+.++..+.++.+.++...      +-|.+
T Consensus       210 ~~~i~~i~~d~~g~lwig-t~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~  282 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIG-TSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMI  282 (781)
T ss_dssp             CSSEEEEEECTTCCEEEE-ETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEE
T ss_pred             CCceeEEEEcCCCCEEEE-eCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEE
Confidence            357899998888886654 4448999986543322111000    012345788888777766665543      56888


Q ss_pred             EeCCCCcEEEEEe---------------cCCceeEEEEeeCccEEE-e-CCcEEEEEcCCCeEEEEEe---------ccC
Q 017642          161 WDDHQSRCIGELS---------------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIE---------TIA  214 (368)
Q Consensus       161 wd~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~-d~~i~vwd~~~~~~~~~~~---------~~~  214 (368)
                      +|..+++......               ....|.++...++|.+.+ . ++.|..++..++.......         ...
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSN  362 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCC
Confidence            9977664322111               235688999988887766 4 7889999986554322110         022


Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee----ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~----~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      ..|.++....++. +++   |+.++-|..++........+.    .....|.++...++|.+.+ |+.++. |..+|..+
T Consensus       363 ~~v~~i~~d~~g~-lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~G-l~~~~~~~  436 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWI---GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGN-ISYYNTRL  436 (781)
T ss_dssp             SCEEEEEECTTSC-EEE---EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEE-EEEECSSS
T ss_pred             cceEEEEEcCCCC-EEE---EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCC-EEEEcCCC
Confidence            4567776666654 343   333444655555443333221    2345689999888887544 666666 99999877


Q ss_pred             CceeEeeEe-ccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          291 GTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       291 ~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ++.. .+.. ......|.++...++|.+.+ |+. +.|.+||..+++
T Consensus       437 ~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          437 KKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK  480 (781)
T ss_dssp             CEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS
T ss_pred             CcEE-EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe
Confidence            6543 3321 11235789998888887555 444 458889887654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00022  Score=69.65  Aligned_cols=237  Identities=11%  Similarity=0.040  Sum_probs=140.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEE--------c---ccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD--------F---ERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      ...|.++....+|.+.+....++|.+++...........        .   ..-....+.++..+.++.+.++...    
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~----  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWG----  332 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBS----
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecC----
Confidence            457999998888875553334789999876543221111        0   0012345788888877665555422    


Q ss_pred             CCCcEEEEeCCCCcEEEEE-------e---cCCceeEEEEeeCccEEE-e-CCcEEEEEcCCCeEEEEE---eccCCCee
Q 017642          154 PLNKVMIWDDHQSRCIGEL-------S---FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQI---ETIANPKG  218 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~-------~---~~~~v~~~~~~~~~~~l~-~-d~~i~vwd~~~~~~~~~~---~~~~~~v~  218 (368)
                        +-|..++..++......       .   ....|.++...+++.+.+ . ++.|.+||..+++.....   ......|.
T Consensus       333 --~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~  410 (781)
T 3v9f_A          333 --GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL  410 (781)
T ss_dssp             --SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred             --CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence              67888987665432221       0   235689999888887766 4 678999998655432211   11234566


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ  295 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (368)
                      ++....++. +++   |..++-+..++........+.   .....|.++...++|++.+ |+. +. |.+||..+++...
T Consensus       411 ~i~~d~~g~-lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~G-l~~~~~~~~~~~~  483 (781)
T 3v9f_A          411 CSLKDSEGN-LWF---GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AG-VFVIDLASKKVIH  483 (781)
T ss_dssp             EEEECTTSC-EEE---EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TE-EEEEESSSSSCCE
T ss_pred             EEEECCCCC-EEE---EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-Cc-eEEEeCCCCeEEe
Confidence            666665554 343   334455655555444444332   1345799999988887444 455 45 8999987766443


Q ss_pred             eeEec---cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          296 EVRRG---ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       296 ~~~~~---~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      .....   .....|.++...++|.+.+....+| |..||.+++
T Consensus       484 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~  525 (781)
T 3v9f_A          484 HYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQ  525 (781)
T ss_dssp             EECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCC
T ss_pred             cccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCC
Confidence            22110   0135789999999888765443345 777876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.40  E-value=0.001  Score=59.34  Aligned_cols=205  Identities=8%  Similarity=-0.031  Sum_probs=123.9

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCC--cceEEEcccCCceeEEEEEEeC--CeEEEEecCCCCCCCCCc
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNK  157 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~  157 (368)
                      ....+..|+|++.+..|...+  .+.|+.++++...  ......+. ........++++.  +.++++-...      +.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~------~~  182 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVL------GT  182 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT------TE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CCCCCcccEEEEecCCceEEEECCC------Ce
Confidence            345788999998777776665  5568888876422  11112221 2233344555553  4444444433      78


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEE-Ee----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIV-VL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |.+.++........+. .-.....+++.|.+..+ +.    .+.|...++........+......-..++++++++.+++
T Consensus       183 I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEE
Confidence            9999977655444444 44568899999855444 43    367999998543332233333345577999999888777


Q ss_pred             EeecCCCCeEEEEecCcceeeeeec---cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +-  ...+.|...+.++.....+..   .-.....|++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus       263 aD--~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          263 VD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             EE--TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEEC
T ss_pred             EE--CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEec
Confidence            63  346778877676655444432   22345677773 3445555556677 99999888877766664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.39  E-value=0.00091  Score=58.90  Aligned_cols=219  Identities=12%  Similarity=0.148  Sum_probs=144.3

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (368)
                      .|.|.|+.......++.+.  ....+  |.+...-+++-+ +       ..+.++|+++.+.++.+.....|.--.|-.+
T Consensus        49 ~vvIiDl~~~~~~~rrpi~--AdsAI--MnP~~~iiALra-g-------~~lQiFnle~K~klks~~~~e~VvfWkWis~  116 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPIS--ADSAI--MNPASKVIALKA-G-------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (494)
T ss_dssp             EEEEEETTSTTSCEEEECC--CSEEE--ECSSSSCEEEEE-T-------TEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred             eEEEEECCCCCcceecccc--cceee--eCCCCcEEEEec-C-------CeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence            4889999887776655552  22222  223333334433 2       7899999999999999998888888888776


Q ss_pred             ccEEE-eCCcEEEEEcCC-CeEEEEEeccC----CCeeEEEEecCCCeEEEEeecC----CCCeEEEEecCcceeeeeec
Q 017642          187 RIIVV-LEQKIFVYNFAD-LKLLHQIETIA----NPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMA  256 (368)
Q Consensus       187 ~~~l~-~d~~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~g~----~dg~i~i~~~~~~~~~~~~~  256 (368)
                      ..+.+ .+..|+-|++.. ..+.+.+..|.    ..|.....+++.+++++..-..    -.|.+.++..+.+.-+.+++
T Consensus       117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG  196 (494)
T 1bpo_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (494)
T ss_dssp             TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred             CeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence            66555 899999999964 34555555432    3444556677777766543222    24667778888888888999


Q ss_pred             cCcceEEEEECCCC---CEEEEEeCC---CcEEEEEECCCC---c-----eeEeeE--eccCcccEEEEEEecCCCEEEE
Q 017642          257 HDSRIACFALTQDG---QLLATSSTK---GTLVRIFNTLDG---T-----LLQEVR--RGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       257 ~~~~i~~v~~sp~g---~~l~s~~~d---g~~i~iwd~~~~---~-----~~~~~~--~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                      |...-..+.+..+.   ++++.+...   +. ++|.++...   .     ....+.  ...-..-..++..++.-..+..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv  275 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence            97766555543222   244444442   56 999998542   1     111111  1111234568889998888888


Q ss_pred             EeCCCeEEEEEccCCCCC
Q 017642          321 SSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       321 ~s~dg~i~iwd~~~~~~~  338 (368)
                      .+.-|.|++||++++...
T Consensus       276 iTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          276 ITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             EETTSEEEEEETTTCCEE
T ss_pred             EecCceEEEEecccceee
Confidence            899999999999998754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.38  E-value=0.00099  Score=58.69  Aligned_cols=230  Identities=13%  Similarity=0.167  Sum_probs=148.9

Q ss_pred             EEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCCcEEEEeCCC-CcE
Q 017642           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SRC  168 (368)
Q Consensus        91 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~~i~vwd~~~-~~~  168 (368)
                      .-.+|..+.+|.-....+.|+|+++........+    ...+.-|.| +++.+.+++.        ..|+-|++.. ..+
T Consensus        71 AIMnP~~~iiALrag~~lQiFnle~K~klks~~~----~e~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~P  138 (494)
T 1bpo_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  138 (494)
T ss_dssp             EEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEEEETTEEEEECS--------SEEEEEESSSSCCC
T ss_pred             eeeCCCCcEEEEecCCeEEEEchHHhhhhcceec----CCCceEEEecCCCeEEEEcC--------CeeEEecccCCCCc
Confidence            3467888888777777799999998776655444    234555666 5677888875        6799999864 356


Q ss_pred             EEEEe-c----CCceeEEEEeeCccEEE----------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          169 IGELS-F----RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       169 ~~~~~-~----~~~v~~~~~~~~~~~l~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      ++.+. |    ...|..-..+++.++++          ..|.+.+|..+.+ ..+.+++|......+.+.-+.....+.|
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEE
Confidence            66665 2    45677778888998887          2578999998654 4566777765544333332222111221


Q ss_pred             ec---CCCCeEEEEecCcc----------eeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          234 PG---LQKGQVRVEHYASK----------RTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       234 ~g---~~dg~i~i~~~~~~----------~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      -+   ...+.++|-.....          .+..+.   .-.+-..++..++....++.-+.-|. |++||+.++.++..-
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeeee
Confidence            12   12367777333211          111111   12344567888888888889999999 999999999999877


Q ss_pred             EeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      +-  ....|..-+-.....=++.....|.|.--.++...
T Consensus       297 rI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          297 RI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cc--cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            75  44566665555555555566688877766665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.38  E-value=5.5e-06  Score=72.86  Aligned_cols=163  Identities=6%  Similarity=-0.056  Sum_probs=107.3

Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-e------------CCcEEEEEcCCCeEEEEEeccC-------CC
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L------------EQKIFVYNFADLKLLHQIETIA-------NP  216 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~------------d~~i~vwd~~~~~~~~~~~~~~-------~~  216 (368)
                      .|.++|..+++.+.++.....- .+.++||++.+. .            ++.|.+||+.+++.+.++..+.       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            7889999999999999833333 899999998777 2            4689999999999999986441       22


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECCC---
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLD---  290 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~~---  290 (368)
                      -..++++|||+.++++. ...+..+.+  ++...  +..+..-. .   +.+.|+|+ .+++.+.||. +.+.|+.+   
T Consensus       126 P~~ia~SpDGk~lyVan-~~~~~~v~V~~iD~~t--v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~-~~~vd~~~~~~  197 (368)
T 1mda_H          126 VHIIGNCASSACLLFFL-FGSSAAAGLSVPGASD--DQLTKSAS-C---FHIHPGAAATHYLGSCPAS-LAASDLAAAPA  197 (368)
T ss_dssp             TTSEEECTTSSCEEEEE-CSSSCEEEEEETTTEE--EEEEECSS-C---CCCEEEETTEEECCCCTTS-CEEEECCSSCC
T ss_pred             cceEEEcCCCCEEEEEc-cCCCCeEEEEEEchhh--ceEEECCC-c---eEEccCCCeEEEEEcCCCC-EEEEECccccc
Confidence            35689999999877654 222456777  55443  33332211 1   12334543 4556677888 88888876   


Q ss_pred             --CceeE----eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          291 --GTLLQ----EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       291 --~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                        ++...    .+..  ...+.   . ++++..++..+. +.|.+.|+...
T Consensus       198 ~~~~v~~~~t~~i~v--g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~  241 (368)
T 1mda_H          198 AAGIVGAQCTGAQNC--SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA  241 (368)
T ss_dssp             CCEECCCCSCTTSCB--CSCCE---E-ETTTTEEEECBS-SCCEEEECCSS
T ss_pred             cCCeEEEEeeeeeeC--CCCcc---c-cccCCEEEEEcC-CEEEEEECCCC
Confidence              43321    1222  12233   3 666776666666 89999998653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=0.00031  Score=63.36  Aligned_cols=237  Identities=9%  Similarity=-0.010  Sum_probs=135.3

Q ss_pred             CEEEEEEcCC--CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~~--g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ....|+|.|+  +..|..+. .+.|+.++...+...  ...  ........+++++++.++++...... ....+..++.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~--~~~--~~~~~P~giavd~dG~lyVad~~~~~-~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD--IKT--TNIGQCADVNFTLNGDMVVVDDQSSD-TNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE--EEC--CCCSCEEEEEECTTCCEEEEECCSCT-TSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE--Eee--cCCCCccEEEECCCCCEEEEcCCCCc-ccceEEEEEC
Confidence            4568899985  44455555 566888887544332  222  33344667888877765555431100 0012333332


Q ss_pred             CCCcE-EEEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEE-eccC-CCeeEEEEecCCCeEEEEeecC
Q 017642          164 HQSRC-IGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQI-ETIA-NPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       164 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      ..+.. ...+..-.....+++++ ++.+.+   .++.|+.+|..++.....+ .... ..-..++++++++.++++-  .
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad--~  292 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY--N  292 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE--T
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe--C
Confidence            22211 12222344567788999 777766   3578999998877653333 2111 1223599999998777654  3


Q ss_pred             CCCeEEEEecCc--cee---eeeecc---------------CcceEEEEE---------CCCCCEEEEEeCCCcEEEEEE
Q 017642          237 QKGQVRVEHYAS--KRT---KFIMAH---------------DSRIACFAL---------TQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       237 ~dg~i~i~~~~~--~~~---~~~~~~---------------~~~i~~v~~---------sp~g~~l~s~~~dg~~i~iwd  287 (368)
                      ..+.|+..+.+.  ..+   ..+.+.               -.....+++         .++|.++++-...+. |+.++
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~  371 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLT  371 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEEC
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEEC
Confidence            456777644332  111   112111               123577999         777776666666667 99998


Q ss_pred             CCCCceeEeeEeccC----------------cccEEEEEEe-cCCCEEEEEeCCCeEEEEEcc
Q 017642          288 TLDGTLLQEVRRGAD----------------RAEIYSLAFS-SNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       288 ~~~~~~~~~~~~~~~----------------~~~v~~l~~s-p~~~~l~s~s~dg~i~iwd~~  333 (368)
                      . +|... .+.+...                -.....|+++ ++|.++++=...+.|+.++++
T Consensus       372 ~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          372 P-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             T-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             C-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            4 56433 3332100                1236789999 667666666677889988875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.36  E-value=0.00071  Score=55.94  Aligned_cols=192  Identities=6%  Similarity=0.030  Sum_probs=114.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ...+..++|+|++..|.+..  ++.|...|.. ++......+  ......-.+++.+++.++++...+     +.+.+++
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l--~g~~D~EGIa~~~~g~~~vs~E~~-----~~l~~~~   97 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL--DFVKDLETIEYIGDNQFVISDERD-----YAIYVIS   97 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--SSCSSEEEEEECSTTEEEEEETTT-----TEEEEEE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--CCCCChHHeEEeCCCEEEEEECCC-----CcEEEEE
Confidence            35799999999877666555  3346666655 333322223  333445566677777776666555     7899998


Q ss_pred             CCCCcE---EEEEe-------cCCceeEEEEeeCccEEE---eCC--cEEEEEc-CCCeEEEEEec-------cCCCeeE
Q 017642          163 DHQSRC---IGELS-------FRSEVRSVKLRRDRIIVV---LEQ--KIFVYNF-ADLKLLHQIET-------IANPKGL  219 (368)
Q Consensus       163 ~~~~~~---~~~~~-------~~~~v~~~~~~~~~~~l~---~d~--~i~vwd~-~~~~~~~~~~~-------~~~~v~~  219 (368)
                      +.....   +....       .......++|++++..+.   ...  .|+.|+- .....+..+..       .......
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence            765432   22222       234568999999874443   223  4555541 11111222211       2234678


Q ss_pred             EEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccC---------cceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~---------~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      +++.|....+++++  .....+.+.+..++.+..+.-..         .....|+|.++|++++ .++... +++|.-
T Consensus       178 l~~dp~tg~lliLS--~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~-~y~f~~  251 (255)
T 3qqz_A          178 AEFNQQKNTLLVLS--HESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNR-FYRFTP  251 (255)
T ss_dssp             EEEETTTTEEEEEE--TTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTE-EEEEEC
T ss_pred             EEEcCCCCeEEEEE--CCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCce-EEEEEe
Confidence            99999988877664  35566666777777555443221         2568999999998444 466665 777753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.35  E-value=9.8e-05  Score=63.84  Aligned_cols=200  Identities=11%  Similarity=0.005  Sum_probs=112.6

Q ss_pred             CEEEEEEcC-CCCEEEEEeCCeEEEEEecCCCcceEE-EcccCCceeEEEEEEeC-CeEEEEecCCCC------------
Q 017642           87 TLLHISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRR-DFERGGGIGVVEMLFRC-NILALVGGGPDP------------  151 (368)
Q Consensus        87 ~v~~~~~s~-~g~~l~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~------------  151 (368)
                      .+..+++.+ +|+++++...+++.+++.+........ ............+..++ ++.++++.....            
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            578899997 666555544667888875533221111 11000112356678888 766555432100            


Q ss_pred             CCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCe--EEEEEeccCCCeeEEEEecC
Q 017642          152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG  225 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~  225 (368)
                      .-..+.|..||..+++.......-.....+++++++..+.    .++.|.+|++....  ....+....+ ...+++.++
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            0012678899987776543333334567899999987443    35789999986421  1122211223 556888888


Q ss_pred             CCeEEEEeec--------CCCCeEEEEecCcceeeeeeccC----cceEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          226 VGSLVLVCPG--------LQKGQVRVEHYASKRTKFIMAHD----SRIACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       226 ~~~~~l~~~g--------~~dg~i~i~~~~~~~~~~~~~~~----~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                      |+ ++++..+        ...+.|..++..++.+..+....    ..++++++ .+++++++...++. |.++++..
T Consensus       240 G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~-i~~~~~~~  313 (322)
T 2fp8_A          240 GH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS-VGILVYDK  313 (322)
T ss_dssp             SC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE-EEEEEC--
T ss_pred             CC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc-eEEEeccc
Confidence            86 5555422        11345666666676666555332    34666666 35665555556666 88888753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.00063  Score=61.34  Aligned_cols=236  Identities=9%  Similarity=0.099  Sum_probs=131.8

Q ss_pred             CEEEEEEcC-CCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEeC
Q 017642           87 TLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        87 ~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ....|+|+| ++..|.++. .+.|+.+|++.....  ...  ........+++++++. ++++...... ....+.+++ 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~--~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~-~~~~v~~~~-  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS--TVY--SGLSKVRTICWTHEADSMIITNDQNNN-DRPNNYILT-  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE--EEE--CCCSCEEEEEECTTSSEEEEEECCSCT-TSEEEEEEE-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE--EEe--cCCCCcceEEEeCCCCEEEEEeCCCCc-ccceEEEEe-
Confidence            457789998 455566565 455888887654322  222  2334566788887765 4444332100 001233344 


Q ss_pred             CCCcEE--EEEecCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEecc-CCCeeEEEEecCCCeEEEEeecC
Q 017642          164 HQSRCI--GELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       164 ~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      ..+...  ..+........++++| ++.+++   .++.|+.++...+......... ...-..++|+++++.++++-  .
T Consensus       212 ~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d--~  289 (430)
T 3tc9_A          212 RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV--V  289 (430)
T ss_dssp             GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE--T
T ss_pred             CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE--C
Confidence            333221  3333344567888999 677666   3678999999876543332221 12345799999999766654  3


Q ss_pred             CCCeEEEEecCcc--e---eeeeecc---------------CcceE-EEEEC--------CCCCEEEEEeCCCcEEEEEE
Q 017642          237 QKGQVRVEHYASK--R---TKFIMAH---------------DSRIA-CFALT--------QDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       237 ~dg~i~i~~~~~~--~---~~~~~~~---------------~~~i~-~v~~s--------p~g~~l~s~~~dg~~i~iwd  287 (368)
                      ..+.|..++.++.  .   ...+.+.               -.... .++..        ++|.++++-...+. |+.++
T Consensus       290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~  368 (430)
T 3tc9_A          290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT  368 (430)
T ss_dssp             TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC
T ss_pred             CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC
Confidence            4667777544421  1   1111111               01123 45553        34655555555566 99988


Q ss_pred             CCCCceeEeeEec----c----C--------cccEEEEEEecC-CCEEEEEeCCCeEEEEEcc
Q 017642          288 TLDGTLLQEVRRG----A----D--------RAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       288 ~~~~~~~~~~~~~----~----~--------~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~  333 (368)
                       .+|+.. .+.+.    .    .        -.....|+++++ +.++++-.....|+.++++
T Consensus       369 -~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          369 -PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             456443 33321    0    0        114789999995 5555555567789988864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.33  E-value=0.0011  Score=57.02  Aligned_cols=200  Identities=10%  Similarity=-0.001  Sum_probs=117.9

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCCCCCCcEEEEe
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      .+..++|.+.+..|....  .+.|..++.+....... .+. ..-.....++++  ...++++-...      +.|.+++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-~~~-~~l~~p~glavd~~~g~ly~~d~~~------~~I~~~~  107 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-VVV-SGLLSPDGLACDWLGEKLYWTDSET------NRIEVSN  107 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-EEE-ECCSCCCEEEEETTTTEEEEEETTT------TEEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-EEc-CCCCCccEEEEEcCCCeEEEEECCC------CEEEEEE
Confidence            567899998766666555  55688888765432111 111 111122344444  34444444333      7899999


Q ss_pred             CCCCcEEEEEe-cCCceeEEEEeeCccEEE-e----CCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeec
Q 017642          163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~----d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      +........+. .-.....+++.|.+..+. .    .+.|...++. |.....+ ...-..-..++++++++.++++-  
T Consensus       108 ~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD--  184 (318)
T 3sov_A          108 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWAD--  184 (318)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEE--
T ss_pred             CCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEE--
Confidence            76543333332 445678999998644443 2    3678888875 3333333 22233446799999888877653  


Q ss_pred             CCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          236 LQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      ...+.|...+.++.....+. ........+++.. +.++.+-...+. |..+|..+++.+..+..
T Consensus       185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEEeC
Confidence            35678888777665444432 2334567777753 344555555666 99999878876655553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.32  E-value=0.00024  Score=66.66  Aligned_cols=57  Identities=12%  Similarity=0.281  Sum_probs=41.5

Q ss_pred             CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       279 dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +|. |.-||+.+++.+.+....   .++..-.....+.+++.++.||.|+.||.++++..-
T Consensus       465 ~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          465 VGS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             SEE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cce-EEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence            577 999999999988777642   222222223346677789999999999999988653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.31  E-value=0.00026  Score=66.29  Aligned_cols=194  Identities=9%  Similarity=0.110  Sum_probs=108.7

Q ss_pred             CCCEEEEEe-CCeEEEEEe-cCCCcceEEEcccCCc--------eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        96 ~g~~l~~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      ++.+++... ++.|.-+|. .+++......+.....        ..........+.+++ ... |     +.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~-d-----g~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVK-KQA-N-----GHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEE-ECT-T-----SEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEE-EeC-C-----CEEEEEECCC
Confidence            444444444 566878887 7777765554421100        000112333444433 332 3     8999999999


Q ss_pred             CcEEEEEecCC-----ceeEEEEeeCccEEE--e------CCcEEEEEcCCCeEEEEEeccCCC----------------
Q 017642          166 SRCIGELSFRS-----EVRSVKLRRDRIIVV--L------EQKIFVYNFADLKLLHQIETIANP----------------  216 (368)
Q Consensus       166 ~~~~~~~~~~~-----~v~~~~~~~~~~~l~--~------d~~i~vwd~~~~~~~~~~~~~~~~----------------  216 (368)
                      |+.+..+....     .+.+--.-.++.+++  .      ++.|+.+|.++|+.+..+......                
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  214 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY  214 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence            99988876322     222211112566555  2      689999999999998877542211                


Q ss_pred             ----------------------eeEEEEecCCCeEEEEeecC----------CC----CeEEE-EecCcceeeeeec--c
Q 017642          217 ----------------------KGLCAVSQGVGSLVLVCPGL----------QK----GQVRV-EHYASKRTKFIMA--H  257 (368)
Q Consensus       217 ----------------------v~~~~~~~~~~~~~l~~~g~----------~d----g~i~i-~~~~~~~~~~~~~--~  257 (368)
                                            ...+++.++...+++.. +.          .|    +.|.. +..+++.+-.+..  |
T Consensus       215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~-g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~  293 (571)
T 2ad6_A          215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  293 (571)
T ss_dssp             CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC-CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence                                  01245556555544433 31          11    23444 4445555544432  2


Q ss_pred             C--------cceEEEEECCCCC---EEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          258 D--------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       258 ~--------~~i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      .        .++. +....+|+   .++.++.+|. +.++|..+|+.+..+..
T Consensus       294 d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          294 DEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             cccccccCCCCEE-EecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence            1        2221 22224674   6778888999 99999999998877653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.31  E-value=0.00031  Score=67.21  Aligned_cols=177  Identities=12%  Similarity=0.161  Sum_probs=105.8

Q ss_pred             cEEEEeCCCCcEEEEEecC----------CceeEEEEeeCcc---EEE---eCCcEEEEEcCCCeEEEEEeccCC-----
Q 017642          157 KVMIWDDHQSRCIGELSFR----------SEVRSVKLRRDRI---IVV---LEQKIFVYNFADLKLLHQIETIAN-----  215 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~---~d~~i~vwd~~~~~~~~~~~~~~~-----  215 (368)
                      .|..+|..+|+.+..++..          .......+..+++   .++   .+|.++++|.++|+.+..+.....     
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            5999999999999888721          2223333444664   333   589999999999998754432110     


Q ss_pred             -------C------------------------eeEEEEecCCCeEEEEe-------------------------------
Q 017642          216 -------P------------------------KGLCAVSQGVGSLVLVC-------------------------------  233 (368)
Q Consensus       216 -------~------------------------v~~~~~~~~~~~~~l~~-------------------------------  233 (368)
                             +                        -..++++|+...+++-.                               
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  430 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCC
Confidence                   0                        01256677666544321                               


Q ss_pred             --ecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          234 --PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       234 --~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                        ....+|.|..|+... +.+.....+ .+.....+...+.+++.++.||. |++||.++++.+..+.... ...-.-+.
T Consensus       431 ~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG~~l~~~~~~~-~~~~~p~~  507 (668)
T 1kv9_A          431 VPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQS-GIVAAPMT  507 (668)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSS-CCCSCCEE
T ss_pred             CCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCccc-chhhhhhcChhheEecCCC-CcccCceE
Confidence              011236677666544 444344332 22332333446778889999999 9999999999998887631 11112344


Q ss_pred             EecCCC-EEEEEeC--------------------CCeEEEEEccCCC
Q 017642          311 FSSNAQ-WLAVSSD--------------------KGTVHVFNLKVNS  336 (368)
Q Consensus       311 ~sp~~~-~l~s~s~--------------------dg~i~iwd~~~~~  336 (368)
                      +..+|+ +++.+..                    .+.|.+|.+....
T Consensus       508 ~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~  554 (668)
T 1kv9_A          508 FELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKA  554 (668)
T ss_dssp             EEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCC
T ss_pred             EEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCccC
Confidence            556776 4444432                    3578889886533

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.30  E-value=0.00038  Score=59.92  Aligned_cols=172  Identities=14%  Similarity=0.223  Sum_probs=110.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCc----c---EEE----e--CCcEEEEEc--CCCeEEEEEec-------c
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR----I---IVV----L--EQKIFVYNF--ADLKLLHQIET-------I  213 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~----~---~l~----~--d~~i~vwd~--~~~~~~~~~~~-------~  213 (368)
                      +.|.+||+ +|+.++.+.. +.++.+..-|+-    +   +++    .  +++|.+|++  .+++ +..+..       .
T Consensus        50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~  126 (355)
T 3amr_A           50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATA  126 (355)
T ss_dssp             TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECC
T ss_pred             CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCC
Confidence            78999998 8998888764 678888877742    1   222    3  578999977  3333 444421       1


Q ss_pred             CCCeeEEEE--ecCCCeEEEEeecCCCCeEEEEecC--------cceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEE
Q 017642          214 ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYA--------SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV  283 (368)
Q Consensus       214 ~~~v~~~~~--~~~~~~~~l~~~g~~dg~i~i~~~~--------~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i  283 (368)
                      ......+|+  ++....+++.. ...+|.+..|...        .+.++.+.. ...+..+...+....|+.+-++.. |
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV-~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-I  203 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMV-TGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-I  203 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEE-ECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-E
T ss_pred             CCCeeEEEEEecCCCCcEEEEE-ECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-E
Confidence            134455777  56544434443 3467888775542        244455544 346788888888889999999977 7


Q ss_pred             EEEECC-----CCceeEeeEeccCcccEEEEEE--ecCCC-EEEEEe-CCCeEEEEEcc
Q 017642          284 RIFNTL-----DGTLLQEVRRGADRAEIYSLAF--SSNAQ-WLAVSS-DKGTVHVFNLK  333 (368)
Q Consensus       284 ~iwd~~-----~~~~~~~~~~~~~~~~v~~l~~--sp~~~-~l~s~s-~dg~i~iwd~~  333 (368)
                      ..+|.+     +++.+..+....-...+..|++  .++++ +|++++ .+++..+||.+
T Consensus       204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            777755     3445544432212346888888  45555 666666 67789999996

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.0011  Score=60.20  Aligned_cols=251  Identities=8%  Similarity=0.018  Sum_probs=134.7

Q ss_pred             CEEEEEEcC-CCCEEEEEeC--CeEEEEEecCCCcceEEEcccCCceeEEEEEE-------eCCeE-EEEecCCCCC-CC
Q 017642           87 TLLHISFNQ-DHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-------RCNIL-ALVGGGPDPQ-YP  154 (368)
Q Consensus        87 ~v~~~~~s~-~g~~l~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~s~~~d~~-~~  154 (368)
                      ....|+|.| ++..|.++.+  +.|++.|++....................+++       ++++. ++++...+.. ..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            578899998 4555555553  34777776654433222211012234677888       76654 4444332100 00


Q ss_pred             CCcEEEEeCCC-CcEE-----EEEecCCceeEEEEeeC-ccEEE---eCCcEEEEEcC-------CCeE-----------
Q 017642          155 LNKVMIWDDHQ-SRCI-----GELSFRSEVRSVKLRRD-RIIVV---LEQKIFVYNFA-------DLKL-----------  206 (368)
Q Consensus       155 ~~~i~vwd~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~l~---~d~~i~vwd~~-------~~~~-----------  206 (368)
                      ...|.+++... ++..     ..+..-.....++++|+ +.+++   .++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            01366675333 2221     22222234567788994 55444   46789999987       5543           


Q ss_pred             EEE-Eec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc--cee---eeeecc---C------------cceE-E
Q 017642          207 LHQ-IET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRT---KFIMAH---D------------SRIA-C  263 (368)
Q Consensus       207 ~~~-~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~--~~~---~~~~~~---~------------~~i~-~  263 (368)
                      ... +.. ....-..++|+|+++.++++-  .....|+..+.++  ..+   ..+.+.   .            .... .
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence            112 221 123346799999999767654  3456777644332  221   122111   0            1234 4


Q ss_pred             EEEC-------CCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-------------Cc---------ccEEEEEEecC
Q 017642          264 FALT-------QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DR---------AEIYSLAFSSN  314 (368)
Q Consensus       264 v~~s-------p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-------------~~---------~~v~~l~~sp~  314 (368)
                      ++..       .+|.++++=..+.. |+.++ .+|. +.++.+..             ..         .....|++.++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEccccccccCCCeEEEEECCCCE-EEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            5554       45666665566666 99998 5664 44544310             01         23678999997


Q ss_pred             -CCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          315 -AQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       315 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                       |.++++=.....||.++++......+..
T Consensus       455 ~g~lyVaD~~N~rIrki~~~~~~~~~~~~  483 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISMEQEENVAGDE  483 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEECCCC------
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence             7666666678899999998766555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.24  E-value=4.7e-05  Score=72.80  Aligned_cols=238  Identities=8%  Similarity=-0.026  Sum_probs=123.3

Q ss_pred             EEEEcC-CCCEEEEEe-CC-----------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC-CCCCCCC
Q 017642           90 HISFNQ-DHGCFAAGT-DH-----------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPL  155 (368)
Q Consensus        90 ~~~~s~-~g~~l~~~~-d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~d~~~~~  155 (368)
                      ++++.+ +|++++.|+ +.           .+.+||..+.+......+...+.......++..++.+++.|+ .+     
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-----  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-----
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-----
Confidence            456677 888888876 21           377888876654332223212222222345555555555555 43     


Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEEeC---------CcEEEEEcCCCeEEEEE----eccCCCeeEE
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQI----ETIANPKGLC  220 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~d---------~~i~vwd~~~~~~~~~~----~~~~~~v~~~  220 (368)
                      ..+.+||..+++....-.  ....-.+++..+++++++..         ..+.+||..+.+-...-    ..........
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~  344 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  344 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence            689999988775443322  22223455666688777722         46999999876533220    0000000001


Q ss_pred             EEecCCCeEEEEeecCCCCe---------EEEEecCcce-eeeeeccC---------cceEEEEEC-CCCCEEEEEeCCC
Q 017642          221 AVSQGVGSLVLVCPGLQKGQ---------VRVEHYASKR-TKFIMAHD---------SRIACFALT-QDGQLLATSSTKG  280 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~dg~---------i~i~~~~~~~-~~~~~~~~---------~~i~~v~~s-p~g~~l~s~~~dg  280 (368)
                      .+..++. ++++  |..+|.         +..|+..... ......+.         ..-.++.|. .++++++.|+.++
T Consensus       345 ~~~~~~~-iyv~--Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~  421 (656)
T 1k3i_A          345 LYRSDNH-AWLF--GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  421 (656)
T ss_dssp             GGTTTCS-CCEE--ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             eeecCCc-eEEE--ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence            1112232 2222  223433         3444433322 11111111         122444443 3778888887543


Q ss_pred             -----------cEEEEEECCCCceeEee-EeccCcccEEEEEEecCCCEEEEEeCC-----------CeEEEEEccCCC
Q 017642          281 -----------TLVRIFNTLDGTLLQEV-RRGADRAEIYSLAFSSNAQWLAVSSDK-----------GTVHVFNLKVNS  336 (368)
Q Consensus       281 -----------~~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d-----------g~i~iwd~~~~~  336 (368)
                                 . |.+||..+.+..... ........-.+++..|++++++.|+.+           ..+.+||..+.+
T Consensus       422 ~~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          422 YQDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                       5 788888776544322 011111122345667899999998854           468999998765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=0.0005  Score=58.92  Aligned_cols=188  Identities=7%  Similarity=-0.052  Sum_probs=110.2

Q ss_pred             eEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEEeC---C--cEEEEEcCCCe
Q 017642          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---Q--KIFVYNFADLK  205 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~d---~--~i~vwd~~~~~  205 (368)
                      ....+++++++.++++....     +.|..||... +....+........+++.+++++++.+   .  .|..+|..+++
T Consensus        33 ~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            44567777777666665444     8899999654 444445556678999999999877632   2  37777877877


Q ss_pred             EEEEEeccC-CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc--eeeee---------eccCcceEEEEECCCCCEE
Q 017642          206 LLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFI---------MAHDSRIACFALTQDGQLL  273 (368)
Q Consensus       206 ~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~~~~---------~~~~~~i~~v~~sp~g~~l  273 (368)
                      ......... .....++..+ +..++ ++ ...++.|.+.+....  .+...         ...-.....|  ++++++|
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~-~~~~~-v~-d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLS-DTQYL-TA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESS-SSEEE-EE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             EEEEEeCCCccccCcccccC-CCcEE-EE-ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence            543332211 1123344433 33333 33 334677777554432  11100         0111234555  7888766


Q ss_pred             EEEeC-CCcEEEEEECCC-Cce--eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          274 ATSST-KGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       274 ~s~~~-dg~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      +.+.. .+. |.+||+.. ++.  ...+..   ......|++.++|+++++....+.|.+++..
T Consensus       182 yv~d~~~~~-I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          182 YVSNTEKML-LLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEEETTTTE-EEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEEeCCCCE-EEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            65554 556 99999864 332  112221   1235678999999887776667889999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.20  E-value=8.4e-05  Score=72.20  Aligned_cols=197  Identities=8%  Similarity=0.023  Sum_probs=106.4

Q ss_pred             eEEEEEEe-CCeEEEEecCCCCCCCCCcEEEEeCCCC-cEEEE-EecCCceeEEEEeeCccEEE---eC-----CcEEEE
Q 017642          131 GVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGE-LSFRSEVRSVKLRRDRIIVV---LE-----QKIFVY  199 (368)
Q Consensus       131 ~~~~~~~~-~~~~~~~s~~~d~~~~~~~i~vwd~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~---~d-----~~i~vw  199 (368)
                      .+..+.|+ |++..++-......-...+|+++|+.++ +.+.. +.  .....++|+||++.++   .+     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56778899 8876554221110000135999999998 63211 11  1245788999997776   23     368888


Q ss_pred             EcCCCeE--EEEEec-cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc--ee--eee-eccCcceEEEEECCCCC
Q 017642          200 NFADLKL--LHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT--KFI-MAHDSRIACFALTQDGQ  271 (368)
Q Consensus       200 d~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~--~~--~~~-~~~~~~i~~v~~sp~g~  271 (368)
                      ++.+++.  ...+.. .......+.|++||+.+++.........|.+.+....  ..  ..+ .........+.|+..+.
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            9877642  223322 2233456889999998776653333455666555432  22  333 33445556666654444


Q ss_pred             EEEEEeCC--C--cEEEEEECCCCceeEe-eEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          272 LLATSSTK--G--TLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       272 ~l~s~~~d--g--~~i~iwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +++....+  +  . |..+|+.++..... +..+.....+..+.+. .+.++++...++..+||-
T Consensus       333 l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          333 LVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            44444443  2  4 77777765322223 3321112245555554 234455666777654443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.19  E-value=0.00037  Score=66.56  Aligned_cols=229  Identities=8%  Similarity=-0.013  Sum_probs=115.3

Q ss_pred             EEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCe-EEEEecCCCCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ..++++..+|++++.|+  +..+.+||..+.+-.....+. ..+.. ......+++ +++++|..+.......+.+||..
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~-~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-VARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-SCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC-ccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            34567788999999998  345999998765433222221 22222 233333344 44444423311122579999998


Q ss_pred             CCcEEEE-------Ee---------cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccCC---------Ce
Q 017642          165 QSRCIGE-------LS---------FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN---------PK  217 (368)
Q Consensus       165 ~~~~~~~-------~~---------~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~~---------~v  217 (368)
                      +++....       +.         ....+..+.. .++..+.  ....+..||..+............         ..
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            8765432       00         0111111111 1233222  245688999877654333322211         12


Q ss_pred             eEEEEecCCCeEEEEeecCCCC-----------eEEEEecCcceeeeee---ccCc-ceEEEEECCCCCEEEEEeCC---
Q 017642          218 GLCAVSQGVGSLVLVCPGLQKG-----------QVRVEHYASKRTKFIM---AHDS-RIACFALTQDGQLLATSSTK---  279 (368)
Q Consensus       218 ~~~~~~~~~~~~~l~~~g~~dg-----------~i~i~~~~~~~~~~~~---~~~~-~i~~v~~sp~g~~l~s~~~d---  279 (368)
                      .++.+...+..++ ++ |+.++           .+.+++.....-..+.   .... .-.++...++|++++.|+.+   
T Consensus       402 ~av~~~~~~~~i~-v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          402 NAVMYDAVKGKIL-TF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             EEEEEETTTTEEE-EE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             ceEeccCCCCeEE-EE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            3344444344444 44 33221           3444554433222221   1111 12345567899999998854   


Q ss_pred             --------CcEEEEEECCCCceeEeeEecc-CcccEEEEEEecCCCEEEEEeC
Q 017642          280 --------GTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       280 --------g~~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                              .. +.+||..+.+-.. +.... .........+.+||++++.|+.
T Consensus       480 ~~~~~~~~~~-v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcCCCCcccc-eEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence                    45 8999987765332 22110 1112234556799999999884

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.15  E-value=0.0011  Score=62.13  Aligned_cols=140  Identities=13%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             CcEEEEeCCCCcEEEEEecCC-----ceeEEEEeeCccEEE-e-------CCcEEEEEcCCCeEEEEEeccCCCe-----
Q 017642          156 NKVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANPK-----  217 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~-~-------d~~i~vwd~~~~~~~~~~~~~~~~v-----  217 (368)
                      +.|.-+|..+|+.+.......     .+.+--.-.++.+++ .       ++.|+.+|.++|+.+..+.......     
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~  210 (599)
T 1w6s_A          131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA  210 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence            899999999999988776322     222211113566666 2       6899999999999988775432110     


Q ss_pred             ---------------------------------eEEEEecCCCeEEEEeecCC--------------CCeEEE-EecCcc
Q 017642          218 ---------------------------------GLCAVSQGVGSLVLVCPGLQ--------------KGQVRV-EHYASK  249 (368)
Q Consensus       218 ---------------------------------~~~~~~~~~~~~~l~~~g~~--------------dg~i~i-~~~~~~  249 (368)
                                                       ...++.+....+++.+ +..              .+.|.. +..+++
T Consensus       211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~  289 (599)
T 1w6s_A          211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGE  289 (599)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred             cccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCc
Confidence                                             1234555666544433 321              123443 444555


Q ss_pred             eeeeeec--cC--------cceEEEEEC-CCC---CEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          250 RTKFIMA--HD--------SRIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       250 ~~~~~~~--~~--------~~i~~v~~s-p~g---~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      .+-.+..  |.        .++. +... .+|   +.++.++.+|. +.++|.++|+.+....
T Consensus       290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence            5544432  21        1221 2222 467   46778899999 9999999999887665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.09  E-value=0.0076  Score=58.46  Aligned_cols=203  Identities=8%  Similarity=-0.045  Sum_probs=116.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCc--ceEEEcc-cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...+..|+|.+....|....  .+.|+.++++....  .....+. ......-+++.|..+.++++-...      +.|.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~------~~I~  496 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL------GTVS  496 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT------TEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCC------CeEE
Confidence            45678899998666665555  45588888764211  1112221 012222334444444555554443      7999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEEeC----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +.++........+. .-.....|++.|.+. +++.|    +.|.+.++........+......-..+++.+.+..+|++-
T Consensus       497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence            99977554433333 445688999999744 44432    6799999864433333333334567799998888877763


Q ss_pred             ecCCCCeEEEEecCcceeeeeec---cCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeE
Q 017642          234 PGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~  298 (368)
                        ...+.|...+.++.....+..   .-.....|++.  +.+|+.+. ..+. |...|..+|+.+..+.
T Consensus       577 --~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~-I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          577 --SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA-IFSANRLTGSDVNLLA  640 (791)
T ss_dssp             --TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE-EEEEETTTCCCCEEEE
T ss_pred             --CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE-EEEEeCCCCcceEEee
Confidence              345678776666655544432   12234567663  33454444 4555 8888877776555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=0.00072  Score=60.98  Aligned_cols=154  Identities=6%  Similarity=0.011  Sum_probs=96.1

Q ss_pred             ceeEEEEee--CccEEEe--CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC-C-eEEEEecCcce
Q 017642          177 EVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-G-QVRVEHYASKR  250 (368)
Q Consensus       177 ~v~~~~~~~--~~~~l~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d-g-~i~i~~~~~~~  250 (368)
                      ....++++|  ++.+.+.  .+.|+.+|+..++...... .......++++++++.++++-.+... . .+.+....+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457889996  3555443  3789999998766544433 44456779999999876665422111 1 23333333322


Q ss_pred             e--eeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE-eCCCe
Q 017642          251 T--KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGT  326 (368)
Q Consensus       251 ~--~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~  326 (368)
                      .  ..+.. ......++++| +|.++++-..++. |..++...+......... .......|+|+|+|++|+.+ ...+.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCE
Confidence            2  22222 23457788999 6776666666777 999998766543222221 12356899999999955544 56788


Q ss_pred             EEEEEccC
Q 017642          327 VHVFNLKV  334 (368)
Q Consensus       327 i~iwd~~~  334 (368)
                      |+.++.+.
T Consensus       294 I~~~~~d~  301 (430)
T 3tc9_A          294 ILRSDYDW  301 (430)
T ss_dssp             EEEEEEET
T ss_pred             EEEEeCCc
Confidence            99988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.01  E-value=2.2e-05  Score=75.37  Aligned_cols=226  Identities=10%  Similarity=-0.064  Sum_probs=120.2

Q ss_pred             EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCC----CcEEEEEe
Q 017642           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS  173 (368)
Q Consensus        99 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~----~~~~~~~~  173 (368)
                      +|+....+.|++.+++.....  ..+  ........++|++ .+.++++....     +.|+.+++..    ......+.
T Consensus       379 ~ll~~~~~~I~~id~~~~~~~--~~~--~~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~  449 (699)
T 1n7d_A          379 YLFFTNRHEVRKMTLDRSEYT--SLI--PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS  449 (699)
T ss_dssp             CBCCCCTTC-CEECTTSCCEE--CCS--CCCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCC
T ss_pred             eEEecCccceEEEeCCCCcce--eee--ccCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEe
Confidence            344444556777776653322  222  1122344566665 34444444333     7899998765    22211221


Q ss_pred             -cCCceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642          174 -FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (368)
Q Consensus       174 -~~~~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~  248 (368)
                       .-.....+++.+ .+.+++   ..+.|.++++........+.........+++.|.+..++++-. ...+.|.+.+.++
T Consensus       450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~-~~~~~I~~~~~dG  528 (699)
T 1n7d_A          450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNG  528 (699)
T ss_dssp             SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC-SSSCCEEBCCSSS
T ss_pred             CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc-CCCCeEEEEeCCC
Confidence             123456778874 344444   3578999998654433333322334567889988776665431 1236677655555


Q ss_pred             ceeeeee-ccCcceEEEEECCCCCEEEEE-eCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCCEEEEEeCCC
Q 017642          249 KRTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       249 ~~~~~~~-~~~~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      .....+. ..-...+.|+|++++..|+.+ ...+. |.++|+..... ..+... ........|++..+ .++++....+
T Consensus       529 ~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          529 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            4433332 223346789999876655544 44556 99999864332 233211 01123445666543 4444555667


Q ss_pred             eEEEEEccCCCC
Q 017642          326 TVHVFNLKVNSG  337 (368)
Q Consensus       326 ~i~iwd~~~~~~  337 (368)
                      .|..++..+++.
T Consensus       606 ~V~~~d~~~G~~  617 (699)
T 1n7d_A          606 AIFSANRLTGSD  617 (699)
T ss_dssp             CEEEEETTTEEE
T ss_pred             eEEEEEccCCCc
Confidence            899998765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.00  E-value=0.0045  Score=58.05  Aligned_cols=194  Identities=9%  Similarity=0.114  Sum_probs=108.5

Q ss_pred             CCCEEEEEeCCeEEEEEecCCCcceEEEcccCCcee------EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642           96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG------VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (368)
Q Consensus        96 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~  169 (368)
                      ++.+++.+.++.|.-+|..+++..............      ........+.+++.+.  +     +.|.-+|..+|+.+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~--d-----g~l~AlD~~TG~~~  140 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL--D-----ASVVALNKNTGKVV  140 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET--T-----TEEEEEESSSCCEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC--C-----CEEEEEECCCCCEE
Confidence            444444444455888888877777665543111000      0112234444444432  3     89999999999998


Q ss_pred             EEEecCC-----cee-EEEEeeC---c--cEEE-e-------CCcEEEEEcCCCeEEEEEeccCCCe-------------
Q 017642          170 GELSFRS-----EVR-SVKLRRD---R--IIVV-L-------EQKIFVYNFADLKLLHQIETIANPK-------------  217 (368)
Q Consensus       170 ~~~~~~~-----~v~-~~~~~~~---~--~~l~-~-------d~~i~vwd~~~~~~~~~~~~~~~~v-------------  217 (368)
                      ..+....     .+. ...+..+   +  .+++ .       ++.|+.+|.++|+.+.........+             
T Consensus       141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            8876221     121 1122222   2  3444 2       6899999999999887654321000             


Q ss_pred             ----------------------------eEEEEecCCCeEEEEeecC-----------C-------C----CeEEEEe-c
Q 017642          218 ----------------------------GLCAVSQGVGSLVLVCPGL-----------Q-------K----GQVRVEH-Y  246 (368)
Q Consensus       218 ----------------------------~~~~~~~~~~~~~l~~~g~-----------~-------d----g~i~i~~-~  246 (368)
                                                  ...++.+....+++.+ +.           .       |    +.|..++ .
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~-gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~  299 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGA-GNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS  299 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEE-CCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeC-CCCCcccCcccccCCCcccccCCcccceEEEEeCC
Confidence                                        1245555666555543 31           1       2    4555544 4


Q ss_pred             Ccceeeeeec--cC--------cceEEEEEC-CCCC---EEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          247 ASKRTKFIMA--HD--------SRIACFALT-QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       247 ~~~~~~~~~~--~~--------~~i~~v~~s-p~g~---~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +++.+-.++.  |.        .++. +... .+|+   +++.++.+|. ++++|..+|+.+..+..
T Consensus       300 TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          300 SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccccc
Confidence            5555554432  32        1221 2221 4674   7888999999 99999999998876654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.99  E-value=0.004  Score=58.81  Aligned_cols=229  Identities=10%  Similarity=-0.028  Sum_probs=125.2

Q ss_pred             CEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcE-EEEEe-c
Q 017642           98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS-F  174 (368)
Q Consensus        98 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~-~  174 (368)
                      .+|+-+..+.|++.+++..........  ..-.....+.+++ ++.++++....     +.|..+++..... ...+. .
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~--~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~~   82 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSG   82 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------C--BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECSS
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEE--cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeCC
Confidence            355666677788888875432211222  2333456777775 34444443333     7899998765432 22233 2


Q ss_pred             CCceeEEEEeeCcc-EEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce
Q 017642          175 RSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (368)
Q Consensus       175 ~~~v~~~~~~~~~~-~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~  250 (368)
                      -.....+++...+. +.+   ..+.|.+.++........+......-..+++.|.+..++++-.| ..+.|.....++..
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~  161 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSS  161 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCS
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCc
Confidence            35788999998544 433   35789999986443222232333445678999987776654322 34566665555554


Q ss_pred             eeeee-ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642          251 TKFIM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (368)
Q Consensus       251 ~~~~~-~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  328 (368)
                      ...+. ..-.....|++++++..|+.+.. .+. |...|+...... .+... ......+|++..+ .++++-...+.|.
T Consensus       162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~~-~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V~  237 (619)
T 3s94_A          162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNRQ-AVVKG-SLPHPFALTLFED-ILYWTDWSTHSIL  237 (619)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEE
T ss_pred             eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCccE-EEEeC-CCCCceEEEEeCC-EEEEecCCCCEEE
Confidence            44432 23345789999987666655544 456 888887543332 22211 1122346677654 3333434567788


Q ss_pred             EEEccCCCCC
Q 017642          329 VFNLKVNSGS  338 (368)
Q Consensus       329 iwd~~~~~~~  338 (368)
                      ..|..+++..
T Consensus       238 ~~d~~tg~~~  247 (619)
T 3s94_A          238 ACNKYTGEGL  247 (619)
T ss_dssp             EEESSSCCCC
T ss_pred             EEECCCCccc
Confidence            8888777654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.99  E-value=0.0005  Score=62.04  Aligned_cols=152  Identities=11%  Similarity=0.117  Sum_probs=94.1

Q ss_pred             ceeEEEEeeC---ccEEEeC--CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC---CCeEEEEecCc
Q 017642          177 EVRSVKLRRD---RIIVVLE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYAS  248 (368)
Q Consensus       177 ~v~~~~~~~~---~~~l~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~---dg~i~i~~~~~  248 (368)
                      ....++++++   +.+++.|  +.|+.+|..+++..... ........++++++++ ++++-.+..   .+.+.+ ....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~-~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF-TRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE-CGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE-ECCC
Confidence            4568999984   6666633  79999999887765443 3444567899999998 665542211   122222 2222


Q ss_pred             cee--eeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE-eCC
Q 017642          249 KRT--KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDK  324 (368)
Q Consensus       249 ~~~--~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d  324 (368)
                      ...  ..+. .......+++++ +|.++++-..++. |+.+|..+++....+........-..|+|+|+|++|+.+ ...
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            111  1121 233456788999 6766666666777 999998877763333221112233579999999955554 466


Q ss_pred             CeEEEEEcc
Q 017642          325 GTVHVFNLK  333 (368)
Q Consensus       325 g~i~iwd~~  333 (368)
                      +.|+.+++.
T Consensus       295 ~~I~~~~~d  303 (433)
T 4hw6_A          295 HCIYRVDYN  303 (433)
T ss_dssp             TEEEEEEBC
T ss_pred             CEEEEEeCC
Confidence            789998875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.96  E-value=0.014  Score=55.29  Aligned_cols=199  Identities=9%  Similarity=-0.054  Sum_probs=118.3

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccC-CceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEe
Q 017642           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ..+..|+|.+.+..|..+.  .+.|..++++.....  ..+..+ ....-+++.|..+.++++-...      +.|.+.+
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~------~~I~v~~  108 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYPEGMAVDWLGKNLYWADTGT------NRIEVSK  108 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCCEEEEETTTTEEEEEETTT------TEEEEEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCcceEEEEeCCCEEEEEECCC------CEEEEEe
Confidence            3578999999877776666  556888887654332  222101 1222334444445555554433      7899999


Q ss_pred             CCCCcEEEEE-ecCCceeEEEEeeC-ccEEEe----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          163 DHQSRCIGEL-SFRSEVRSVKLRRD-RIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       163 ~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +........+ ..-.....+++.|. |.+.+.    .+.|...++.... ...+-.....-..+++.++++.++++-  .
T Consensus       109 ~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD--~  185 (628)
T 4a0p_A          109 LDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTD--L  185 (628)
T ss_dssp             TTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEE--T
T ss_pred             cCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEE--C
Confidence            7654433233 24456789999984 554443    3578888875433 333323334556799999988877764  3


Q ss_pred             CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ..+.|...+.++.....+.........|++.. +.++++-...+. |...|..+++....+
T Consensus       186 ~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          186 DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRTII  244 (628)
T ss_dssp             TTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEE
T ss_pred             CCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceEEE
Confidence            46778776666644444444444556788764 444444444666 888887776544333

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.90  E-value=7.7e-05  Score=71.64  Aligned_cols=200  Identities=9%  Similarity=-0.052  Sum_probs=114.1

Q ss_pred             CCEEEEEEcCCCCEEEEEe--CCeEEEEEecC----CCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCCCCCCc
Q 017642           86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP----FREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~~  157 (368)
                      ..+..|+|.+.+..|....  .+.|+.++++.    ....  ..+. ........++++  .+.+++ +....     +.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~-~~~~~P~glavD~~~g~LY~-tD~~~-----~~  476 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVIS-RDIQAPDGLAVDWIHSNIYW-TDSVL-----GT  476 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCC-SCC--CCCEECCCSSSBCEE-CCTTT-----SC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEe-CCCCCcceEEEEeeCCcEEE-EeccC-----Ce
Confidence            3566789998877777766  45588888764    1111  1111 111112234444  333443 33333     78


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCcc-EEEeC----CcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVLE----QKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~d----~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  230 (368)
                      |.++++........+. .......+++.|.+. +++.|    +.|.++++.. .....+ ......-..++|+++++.+|
T Consensus       477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCCCEEECTTTCCEE
T ss_pred             EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCccEEEEeccCCEEE
Confidence            9999976554433333 235578889998644 44422    6788887743 222222 22223345699999988877


Q ss_pred             EEeecCCCCeEEEEecCcceeeeeec---cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          231 LVCPGLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      ++-  ...+.|...+.++.....+..   .......|++..+ .++++....+. |..+|..+++.+..+..
T Consensus       556 ~aD--~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          556 WVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EEE--TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCT
T ss_pred             EEe--cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeec
Confidence            764  346778876666544443322   1123345666443 44555555667 99999888887766654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.0063  Score=51.92  Aligned_cols=188  Identities=5%  Similarity=0.026  Sum_probs=110.9

Q ss_pred             EEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE-Eec-------CCceeEEEE---eeCccEEE-e--------
Q 017642          134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSF-------RSEVRSVKL---RRDRIIVV-L--------  192 (368)
Q Consensus       134 ~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~l~-~--------  192 (368)
                      +..|+. ++.++++.-..     ++|..||...+..... +..       ...+..+.|   .+++++++ .        
T Consensus        17 ~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            456655 45555665444     9999999876644333 212       114679999   68887776 2        


Q ss_pred             -------CCcEEEEEcC---CCeEEEEEecc-------------CCCeeEEEEecCCCeEEEEeecCCC-CeEEEEecCc
Q 017642          193 -------EQKIFVYNFA---DLKLLHQIETI-------------ANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYAS  248 (368)
Q Consensus       193 -------d~~i~vwd~~---~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~l~~~g~~d-g~i~i~~~~~  248 (368)
                             +..|..||+.   +++.+......             ......+++.++|+. |+.  ++.. +.|...+.++
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-YVt--~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-YVA--FALGMPAIARVSADG  168 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-EEE--EEESSCEEEEECTTS
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-EEe--CCCCCCeEEEEeCCC
Confidence                   3679999998   78776655411             123567888888875 332  3334 5555555555


Q ss_pred             ceeeeee------ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe---cc--CcccEEEE-EEecCCC
Q 017642          249 KRTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GA--DRAEIYSL-AFSSNAQ  316 (368)
Q Consensus       249 ~~~~~~~------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~---~~--~~~~v~~l-~~sp~~~  316 (368)
                      +.+..+.      ......+.|+++|+|+.|++....|. |..+|+.+.... .+..   +.  .-.....| ..-.+|+
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence            4333322      11223678999999998888877888 999998843220 1221   10  01123343 3345777


Q ss_pred             EE-EEEeCCCeEEEEE
Q 017642          317 WL-AVSSDKGTVHVFN  331 (368)
Q Consensus       317 ~l-~s~s~dg~i~iwd  331 (368)
                      .| ++....+.+.+.+
T Consensus       247 vllV~~~~~~~~~l~S  262 (334)
T 2p9w_A          247 SVLVGARAPYAISFRS  262 (334)
T ss_dssp             EEEEEEETTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEC
Confidence            74 4444555444443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.64  E-value=0.026  Score=49.18  Aligned_cols=227  Identities=12%  Similarity=0.056  Sum_probs=117.2

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCC-----eEEEEecCCCCCCCCCcE
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN-----ILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~s~~~d~~~~~~~i  158 (368)
                      ..-..|+|.|+|+++++-..+.|.+++  .++......+.  .........++++++     .++++...... -..+.|
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~-~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG-GLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT-SSEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC-CCccEE
Confidence            356799999999977665577788887  33322111111  123456788899987     34444332100 000357


Q ss_pred             EEEeCCCCc-----EEE-EEec-C---CceeEEEEeeCccEEEeC----------------CcEEEEEcCCC--------
Q 017642          159 MIWDDHQSR-----CIG-ELSF-R---SEVRSVKLRRDRIIVVLE----------------QKIFVYNFADL--------  204 (368)
Q Consensus       159 ~vwd~~~~~-----~~~-~~~~-~---~~v~~~~~~~~~~~l~~d----------------~~i~vwd~~~~--------  204 (368)
                      ..|+...+.     .+. .+.. .   .....++|.|||.+.+.+                +.|..++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            777766432     111 1221 1   234689999999777732                34555554320        


Q ss_pred             ----eEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCCC-------eEEEEecCc-----------------ceeeeee
Q 017642          205 ----KLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYAS-----------------KRTKFIM  255 (368)
Q Consensus       205 ----~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg-------~i~i~~~~~-----------------~~~~~~~  255 (368)
                          .....+ .++.+ ...++|+++...++++-.| .+.       .|.+.....                 ..+..+ 
T Consensus       188 ~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          188 GRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             CCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                011111 12222 3457899855555655433 232       233211111                 111122 


Q ss_pred             ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce------eEeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      .+......++| .+|.++++.-..+. |...++.....      ...+..  ....+..+++.|||.++++..
T Consensus       265 ~~~~ap~G~~~-~~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAF-FRGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEE-ETTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEE-ECCEEEEEECCCCE-EEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence            12234567777 46766555555555 77777654331      122222  235789999999998776653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.64  E-value=0.044  Score=51.70  Aligned_cols=224  Identities=7%  Similarity=-0.041  Sum_probs=127.0

Q ss_pred             EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeC-CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCC
Q 017642           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS  176 (368)
Q Consensus        99 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~  176 (368)
                      +|+.+..+.|+..+++....... .+....-.....+.+++ ++.++++....     +.|+.+++........+. .-.
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~~  392 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQIA  392 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEEcccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCCC
Confidence            56666666787777765443211 11112234567888886 34444444333     789999976544333333 335


Q ss_pred             ceeEEEEeeC-ccEEE---eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee
Q 017642          177 EVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT  251 (368)
Q Consensus       177 ~v~~~~~~~~-~~~l~---~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~  251 (368)
                      ....+++... +.+.+   ..+.|.+.++.... ...+ ......-..+++.|....++++-.| ..+.|.....++...
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g-~~~~I~r~~~dG~~~  470 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSDR  470 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCC-CCCEEEEEccCCCcc
Confidence            6788999864 43333   35789999986443 3333 2333456779999986666654322 245666555555443


Q ss_pred             eee-eccCcceEEEEECCCCCEEEEEeCC-CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE-eCCCeEE
Q 017642          252 KFI-MAHDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVH  328 (368)
Q Consensus       252 ~~~-~~~~~~i~~v~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~  328 (368)
                      ..+ ...-...+.|++++++..|+.+... +. |..+++.... ...+... .-....+|+...+  .|+.. ...+.|.
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~l~~P~glav~~~--~ly~tD~~~~~I~  545 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTG-RRVLVED-KIPHIFGFTLLGD--YVYWTDWQRRSIE  545 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCC-CEEEEEC-CCCSSCCEEEETT--EEEEECTTSSCEE
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCc-eEEEecc-CCCCcEEEEEECC--EEEEeecCCCeEE
Confidence            333 2234567899999877766666554 55 8889875433 3233211 1122345555433  44444 3455677


Q ss_pred             EEEccCC
Q 017642          329 VFNLKVN  335 (368)
Q Consensus       329 iwd~~~~  335 (368)
                      ..|..++
T Consensus       546 ~~~k~~g  552 (619)
T 3s94_A          546 RVHKRSA  552 (619)
T ss_dssp             EEESSSC
T ss_pred             EEEcCCC
Confidence            7776665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.61  E-value=0.027  Score=48.51  Aligned_cols=188  Identities=13%  Similarity=0.190  Sum_probs=107.8

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEE----eCCe--EEEEecCC--CCCCCCCcEEEEeC--CC
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF----RCNI--LALVGGGP--DPQYPLNKVMIWDD--HQ  165 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~s~~~--d~~~~~~~i~vwd~--~~  165 (368)
                      ..+++... ++++.+||+ .++..  ..+. .....-+.+..    ....  +++++...  +     ++|.+|++  .+
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l--~~~~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~-----n~l~vf~iDp~~  110 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKML--HSYN-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK-----NTIEIYAIDGKN  110 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEE--EEEC-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTC-----CEEEEEEECTTT
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEE--EEcc-CCCcccEEEecccccCCceEeEEEEeCCCCCC-----CeEEEEEECCCC
Confidence            34443333 777999999 44443  3342 23333333332    1111  45566554  5     89999966  34


Q ss_pred             CcEEEEEe-------cC-CceeEEEE--eeC-cc-EEE---eCCcEEEEEcC-------CCeEEEEEeccCCCeeEEEEe
Q 017642          166 SRCIGELS-------FR-SEVRSVKL--RRD-RI-IVV---LEQKIFVYNFA-------DLKLLHQIETIANPKGLCAVS  223 (368)
Q Consensus       166 ~~~~~~~~-------~~-~~v~~~~~--~~~-~~-~l~---~d~~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~~  223 (368)
                      ++ +..+.       .. ..+..+++  ++. +. +++   .+|.+..|++.       +.+.++++... ..+..|...
T Consensus       111 ~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvD  188 (355)
T 3amr_A          111 GT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAAD  188 (355)
T ss_dssp             CC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEE
T ss_pred             Cc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEc
Confidence            43 44442       11 56777887  553 43 333   57899999882       34667777653 467778888


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecC------cceeeeee-c-cCcceEEEEE--CCCCC-EEEEEe-CCCcEEEEEECC-C
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYA------SKRTKFIM-A-HDSRIACFAL--TQDGQ-LLATSS-TKGTLVRIFNTL-D  290 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~------~~~~~~~~-~-~~~~i~~v~~--sp~g~-~l~s~~-~dg~~i~iwd~~-~  290 (368)
                      +....+++.   .++.-|..++..      ...+..+. + -...+..|++  .++++ ||++++ .+.. ..|||.. +
T Consensus       189 d~~g~Lyv~---eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s-~~Vydr~~~  264 (355)
T 3amr_A          189 DEYGRLYIA---EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS-YAIYDRQGK  264 (355)
T ss_dssp             TTTTEEEEE---ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESSTT
T ss_pred             CCCCeEEEe---cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE-EEEEECCCC
Confidence            877776653   345333333322      12332221 2 2236788887  56666 666666 4556 9999996 6


Q ss_pred             CceeEeeEe
Q 017642          291 GTLLQEVRR  299 (368)
Q Consensus       291 ~~~~~~~~~  299 (368)
                      .+.+..|..
T Consensus       265 ~~~vg~f~I  273 (355)
T 3amr_A          265 NKYVADFRI  273 (355)
T ss_dssp             CCEEEEEEE
T ss_pred             CcEEEEEEe
Confidence            777777763

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.56  E-value=0.0091  Score=52.64  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=85.9

Q ss_pred             eCCcEEEEEcCCCeEEEEEecc----CCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-c---c---------eeeee
Q 017642          192 LEQKIFVYNFADLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-S---K---------RTKFI  254 (368)
Q Consensus       192 ~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~---~---------~~~~~  254 (368)
                      .++.||.-++......+.+...    ...+..+.++|+|+.+.++  |  +..|.|-... +   .         ..+.+
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~--g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty  114 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF--N--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY  114 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE--C--SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe--c--CCeEEEEEecCccccCcccccccccceeEE
Confidence            7888888888754445555443    2357779999999964443  4  4566662221 1   1         11122


Q ss_pred             ec------cCcceEEEEECCCC---CEEEEEeCCCcEEEEEECCCCc--eeEeeEe-------ccCcccEEEEEEecCCC
Q 017642          255 MA------HDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGT--LLQEVRR-------GADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       255 ~~------~~~~i~~v~~sp~g---~~l~s~~~dg~~i~iwd~~~~~--~~~~~~~-------~~~~~~v~~l~~sp~~~  316 (368)
                      .-      ...+|..+.|||-+   ..|++-..|+. |++||+....  +. .+..       ......|.+++|..++-
T Consensus       115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence            21      24679999999954   48999999999 9999998522  22 2221       11225789999999887


Q ss_pred             EEEEEe--CCCeEEEE
Q 017642          317 WLAVSS--DKGTVHVF  330 (368)
Q Consensus       317 ~l~s~s--~dg~i~iw  330 (368)
                      .|...+  .+|.|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            777655  77877643

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.50  E-value=0.082  Score=51.27  Aligned_cols=228  Identities=13%  Similarity=0.147  Sum_probs=127.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...|.+|.-..+|.+- .|+.+++..||-......  ..........+.++..+.++.+.++..       +-+..||..
T Consensus        21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~   90 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQH--FTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYR   90 (758)
T ss_dssp             CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEEC--SCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETT
T ss_pred             cceEEEEEECCCCCEE-EEECCCccccCCCceEEE--EccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCC
Confidence            5679999888887644 466678888873221110  000001234577777777665555443       458899987


Q ss_pred             CCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEe-----ccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          165 QSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       165 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      +.+...... ....|.++.. .++.+.+ ..+.|..+|..+++.. .+.     .....|.++....++. +++++   .
T Consensus        91 ~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~-lWigt---~  164 (758)
T 3ott_A           91 ADRYEQPETDFPTDVRTMAL-QGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ-IYVGT---Y  164 (758)
T ss_dssp             TTEECCCSCCCCSCEEEEEE-ETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC-EEEEE---T
T ss_pred             CCEEECcccCCCceEEEEEe-cCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC-EEEEe---C
Confidence            764322111 2335666654 4555554 6668999998766543 231     1123455555555554 34432   3


Q ss_pred             CCeEEEEecCcceeeeeec------cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          238 KGQVRVEHYASKRTKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       238 dg~i~i~~~~~~~~~~~~~------~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      +|.. .++........+..      ....|.++....++..|..|+. +. |..+|..+++.. .+... ....|.++..
T Consensus       165 ~Gl~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~-~~~~l-~~~~i~~i~~  239 (758)
T 3ott_A          165 NGLC-RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIK-QTEAF-HNNSIKSLAL  239 (758)
T ss_dssp             TEEE-EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEE-EEEEE-EEEEEEEEEE
T ss_pred             CCHh-hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEE-eccCC-CCCeEEEEEE
Confidence            4543 34433333222211      1224888888777765555654 45 889998766543 22211 2346888888


Q ss_pred             ecCCCEEEEEeCCCeEEEEEccCC
Q 017642          312 SSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       312 sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      ..+|.+.+. +.+ -|.+++..++
T Consensus       240 d~~g~lWig-T~~-Gl~~~~~~~~  261 (758)
T 3ott_A          240 DGNGDLLAG-TDN-GLYVYHNDTT  261 (758)
T ss_dssp             CTTCCEEEE-ETT-EEEEECCTTS
T ss_pred             cCCCCEEEE-eCC-ceeEEecCCC
Confidence            888876654 444 4888887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=0.0067  Score=55.16  Aligned_cols=156  Identities=10%  Similarity=0.075  Sum_probs=91.5

Q ss_pred             ceeEEEEeeC--ccEEE-e--CCcEEEEEcCCCeEEEEEeccC---CCeeEEEE-------ecCCCeEEEEeecCC----
Q 017642          177 EVRSVKLRRD--RIIVV-L--EQKIFVYNFADLKLLHQIETIA---NPKGLCAV-------SQGVGSLVLVCPGLQ----  237 (368)
Q Consensus       177 ~v~~~~~~~~--~~~l~-~--d~~i~vwd~~~~~~~~~~~~~~---~~v~~~~~-------~~~~~~~~l~~~g~~----  237 (368)
                      ....|+|.|.  +.+++ .  .+.|++.|++++.....+....   .....++|       +++++.++++.....    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568899973  44444 2  3579999998877655443321   23577899       999987666542210    


Q ss_pred             CCeEEEEecCc--cee-----eeeeccCcceEEEEECCC-CCEEEEEeCCCcEEEEEECC-------CCce---------
Q 017642          238 KGQVRVEHYAS--KRT-----KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTL-------DGTL---------  293 (368)
Q Consensus       238 dg~i~i~~~~~--~~~-----~~~~~~~~~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~-------~~~~---------  293 (368)
                      ...|.+.+...  ...     ..+... .....++++|+ +.++++-..++. |..+|+.       ++..         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeecccccccc
Confidence            11233332222  111     122222 23457888995 555556667777 9999987       5543         


Q ss_pred             --eEeeEeccCcccEEEEEEecCCCEEEEE-eCCCeEEEEEccC
Q 017642          294 --LQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKV  334 (368)
Q Consensus       294 --~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~  334 (368)
                        ...+...........|+|+|+|++|+.+ +....|+.++...
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence              1122111123456899999999965544 5667888877643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.47  E-value=0.0049  Score=62.34  Aligned_cols=231  Identities=13%  Similarity=0.166  Sum_probs=135.5

Q ss_pred             EEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCCcEEEEeCCCC-cEE
Q 017642           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQS-RCI  169 (368)
Q Consensus        92 ~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~~i~vwd~~~~-~~~  169 (368)
                      -.+|..+.+|.-....+.|+|+++........+    ...|.-|.| +++.+.+++.        ..|+-|++... .++
T Consensus        72 IMnP~~~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQPV  139 (1630)
T ss_pred             ccCCCcceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCccH
Confidence            456777777766666799999987666644333    345677777 4567777775        57999998642 344


Q ss_pred             EEEe-c----CCceeEEEEeeCccEEE----------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCC--CeEE-E
Q 017642          170 GELS-F----RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV--GSLV-L  231 (368)
Q Consensus       170 ~~~~-~----~~~v~~~~~~~~~~~l~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~-l  231 (368)
                      +.+. |    ...|..-..+++.++++          ..|.+.+|..+.+ ..+.+++|......+.+....  ..++ +
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEE
Confidence            4443 2    45677778888888887          2588999998644 345556665544333332111  1111 1


Q ss_pred             EeecCCCCeEEEEecC----ccee------eeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          232 VCPGLQKGQVRVEHYA----SKRT------KFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~----~~~~------~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      +......+.++|-...    +...      ..+.   .-..-..++..++....+...+.-|. |.++|+.++.++..-+
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence            1111123566663221    1111      0111   11233456777877778888889999 9999999999886655


Q ss_pred             eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       299 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      -  ....|...+-.....=++.....|.|.--.++...-.
T Consensus       298 i--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          298 I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             c--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            4  2334444443333233334446666665555554433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.45  E-value=0.045  Score=47.11  Aligned_cols=229  Identities=10%  Similarity=-0.006  Sum_probs=121.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEccc-CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ...+.+|.|.+ +..++++..+.|  |....+.......... .....+..+.+.+++..++.+..      +.|..-+ 
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------g~v~~S~-  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV------GAIYRTK-  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT------CCEEEES-
T ss_pred             CccEEEEEecC-CeEEEEECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC------ccEEEEc-
Confidence            34688999986 555566556544  3333333333222110 11233556666554555555443      5443221 


Q ss_pred             CCCcEEEEEe--cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          164 HQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      ..|+.-....  ....+..+.+.+++.+++  .++.++.-+-..++.-..+ ......+..+.+.+++. ++++.   .+
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~---~~  224 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIV---NG  224 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEE---TT
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEe---CC
Confidence            2333222222  456788999999888877  3555554431112221111 12344667788888775 33322   46


Q ss_pred             CeEEEEecC-cceeeeee----ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEe
Q 017642          239 GQVRVEHYA-SKRTKFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFS  312 (368)
Q Consensus       239 g~i~i~~~~-~~~~~~~~----~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s  312 (368)
                      |.+++...+ +..-..+.    .+...+..+.+.+++.+++++. +|. | ++....|+.-..+... .....+.++.|.
T Consensus       225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~-i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA-L-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC-E-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe-E-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence            777665322 22222222    1223588999998887666654 676 5 4555556555444321 123467889997


Q ss_pred             cCCCEEEEEeCCCeEEEEE
Q 017642          313 SNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd  331 (368)
                      +++. +++++.+|.|.-++
T Consensus       302 ~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          302 SPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             ETTE-EEEECSTTEEEEEC
T ss_pred             CCCc-eEEEcCCceEEEEc
Confidence            6555 55667789776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.45  E-value=0.048  Score=47.37  Aligned_cols=203  Identities=7%  Similarity=0.060  Sum_probs=106.9

Q ss_pred             CEEEEEEcCCCCEEEEE-------------eCCeEEEEEecCCCc-ceEEEccc----CCceeEEEEEEeC----CeEEE
Q 017642           87 TLLHISFNQDHGCFAAG-------------TDHGFRIYNCDPFRE-IFRRDFER----GGGIGVVEMLFRC----NILAL  144 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~-------------~d~~i~iw~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~----~~~~~  144 (368)
                      ..-.+...++|..++++             .++.|.++|.++... .....+..    ........+.+..    ...++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34455677888776665             356699999864221 11112211    1122344444422    22333


Q ss_pred             EecCCCCCCCCCcEEEEeCCCC-cE---EEEEec--CCceeEEEEeeCccEEEe------C--------------CcEEE
Q 017642          145 VGGGPDPQYPLNKVMIWDDHQS-RC---IGELSF--RSEVRSVKLRRDRIIVVL------E--------------QKIFV  198 (368)
Q Consensus       145 ~s~~~d~~~~~~~i~vwd~~~~-~~---~~~~~~--~~~v~~~~~~~~~~~l~~------d--------------~~i~v  198 (368)
                      +.....   .+..|.+|++..+ ..   +..+.+  -...+++.+.++|.+.+.      |              |.|+.
T Consensus       131 Vvnh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          131 VVNHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEECST---TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEECCC---CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            332220   1267778776543 22   223332  235789999999987661      1              33444


Q ss_pred             EEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cc--eeeeeeccCcceEEEEECC-CCCEE
Q 017642          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SK--RTKFIMAHDSRIACFALTQ-DGQLL  273 (368)
Q Consensus       199 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~--~~~~~~~~~~~i~~v~~sp-~g~~l  273 (368)
                      +|.  ++. +.+...-..-+.++|+||++.++++-+  ..+.|..++..  +.  ....+ ...+....+++.+ +|++.
T Consensus       208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence            443  332 222222334567999999998877653  45777775443  21  12223 2345678899999 59977


Q ss_pred             EEEeCCCcEEEEEECC--CCceeEeeE
Q 017642          274 ATSSTKGTLVRIFNTL--DGTLLQEVR  298 (368)
Q Consensus       274 ~s~~~dg~~i~iwd~~--~~~~~~~~~  298 (368)
                      +++..++..|..||-.  .+..+..++
T Consensus       282 va~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEecCCceEEEEECCCCCCCCEEEEEE
Confidence            7666554214444433  234444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.41  E-value=0.0048  Score=62.45  Aligned_cols=220  Identities=10%  Similarity=0.101  Sum_probs=136.4

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (368)
                      .|.|.|+.......++.+.  ....    .-+|...+++--..      .++.|+|+++...++.+.....|.--.|-.+
T Consensus        49 ~vvIidl~~~~~~~rrpi~--AdsA----IMnP~~~iiALrag------~~lQiFnl~~k~klks~~~~e~VvfWkWis~  116 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRPIS--ADSA----IMNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  116 (1630)
T ss_pred             eEEEEECCCCCCccccccc--chhh----ccCCCcceEEEecC------CeEEEeehHHhhhhcccccCCCceEEEecCC
Confidence            4888998876665444432  2111    12333333332222      7899999999999999887788888888766


Q ss_pred             ccEEE-eCCcEEEEEcCC-CeEEEEEecc----CCCeeEEEEecCCCeEEEEee----cCCCCeEEEEecCcceeeeeec
Q 017642          187 RIIVV-LEQKIFVYNFAD-LKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP----GLQKGQVRVEHYASKRTKFIMA  256 (368)
Q Consensus       187 ~~~l~-~d~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~----g~~dg~i~i~~~~~~~~~~~~~  256 (368)
                      ..+.+ .+..|+.|++.. ..+.+.+..|    ...|.....+++.++++++.-    |.-.|.+.++....+..+.+.+
T Consensus       117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg  196 (1630)
T 1xi4_A          117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (1630)
T ss_pred             CeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence            55544 899999999964 2333333333    334555666777777665432    2245777788888787788888


Q ss_pred             cCcceEEEEECC--C-CCEEEEEeC---CCcEEEEEECCCC---ceeE-----e--eEeccCcccEEEEEEecCCCEEEE
Q 017642          257 HDSRIACFALTQ--D-GQLLATSST---KGTLVRIFNTLDG---TLLQ-----E--VRRGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       257 ~~~~i~~v~~sp--~-g~~l~s~~~---dg~~i~iwd~~~~---~~~~-----~--~~~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                      |.+.-..+....  . ..+++.+..   .+. ++|-++...   ....     .  +....-..-..++..++.-..+..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence            876655544421  1 223333322   256 999998542   1110     0  111001123456777887778888


Q ss_pred             EeCCCeEEEEEccCCCCCC
Q 017642          321 SSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       321 ~s~dg~i~iwd~~~~~~~~  339 (368)
                      .+.-|.|++||+.++...=
T Consensus       276 itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EecCceEEEEecccchhhh
Confidence            8899999999999987653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.40  E-value=0.056  Score=46.97  Aligned_cols=184  Identities=12%  Similarity=0.120  Sum_probs=102.1

Q ss_pred             EEEEEeCCeEEEEecCC-CCC------CCCCcEEEEeCCCC-cEEEEEec--------CCceeEEEEee--Ccc--EEEe
Q 017642          133 VEMLFRCNILALVGGGP-DPQ------YPLNKVMIWDDHQS-RCIGELSF--------RSEVRSVKLRR--DRI--IVVL  192 (368)
Q Consensus       133 ~~~~~~~~~~~~~s~~~-d~~------~~~~~i~vwd~~~~-~~~~~~~~--------~~~v~~~~~~~--~~~--~l~~  192 (368)
                      -++...+++.++++++. .+.      -.+|.|.++|.++. .....+..        .-....+.+.+  ++.  +++.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            34445677777777531 000      02389999998742 12233331        13677788766  342  3332


Q ss_pred             -----CCcEEEEEcCCC--e--EEEEEecc-CCCeeEEEEecCCCeEEEEeec----------------CCCCeEEEEec
Q 017642          193 -----EQKIFVYNFADL--K--LLHQIETI-ANPKGLCAVSQGVGSLVLVCPG----------------LQKGQVRVEHY  246 (368)
Q Consensus       193 -----d~~i~vwd~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~g----------------~~dg~i~i~~~  246 (368)
                           +..|.+|++...  .  .+..+.+. ....+.+.+.++|..  ++...                ...|.|..++.
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f--yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF--YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE--EEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE--EecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence                 567888777442  2  22333321 234567888888862  22211                01233333333


Q ss_pred             CcceeeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCC-Cce--eEeeEeccCcccEEEEEEec-CCCEEEEE
Q 017642          247 ASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSS-NAQWLAVS  321 (368)
Q Consensus       247 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~l~~sp-~~~~l~s~  321 (368)
                        ..+..+...-...+.|+|+||++.|+.+.. .+. |..|++.. ++.  ...+.   ..+..-.+++.+ +|++.+++
T Consensus       211 --~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          211 --NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             --TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEE
T ss_pred             --CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEe
Confidence              233333333345789999999987776654 556 99999863 332  22332   245678899999 59988766


Q ss_pred             eCC
Q 017642          322 SDK  324 (368)
Q Consensus       322 s~d  324 (368)
                      ..+
T Consensus       285 ~~~  287 (355)
T 3sre_A          285 HPN  287 (355)
T ss_dssp             ESC
T ss_pred             cCC
Confidence            544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.31  E-value=0.026  Score=48.18  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=95.4

Q ss_pred             ceeEEEEee-CccEEE---eCCcEEEEEcCCCeEEEE-Eec----cCC--CeeEEEE---ecCCCeEEEEeec-------
Q 017642          177 EVRSVKLRR-DRIIVV---LEQKIFVYNFADLKLLHQ-IET----IAN--PKGLCAV---SQGVGSLVLVCPG-------  235 (368)
Q Consensus       177 ~v~~~~~~~-~~~~l~---~d~~i~vwd~~~~~~~~~-~~~----~~~--~v~~~~~---~~~~~~~~l~~~g-------  235 (368)
                      --.+++|.+ ++++++   ..++|..||...+..... +..    ...  ....+.+   .+++ .+++++..       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccccccccc
Confidence            445788877 455555   479999999875543333 221    111  2356777   4663 33433210       


Q ss_pred             ----CCCCeEEEEecC----cceeeeee--cc-----------CcceEEEEECCCCCEEEEEeCC-CcEEEEEECCCCce
Q 017642          236 ----LQKGQVRVEHYA----SKRTKFIM--AH-----------DSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTL  293 (368)
Q Consensus       236 ----~~dg~i~i~~~~----~~~~~~~~--~~-----------~~~i~~v~~sp~g~~l~s~~~d-g~~i~iwd~~~~~~  293 (368)
                          +.+..+..++..    ++.+....  ..           ......|+..++|+..++++.. +. |...+.. |+.
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~-I~rV~pd-G~~  170 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA-IARVSAD-GKT  170 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE-EEEECTT-SCC
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe-EEEEeCC-CCE
Confidence                014555556655    44443322  11           1247899999999988888887 77 7777643 443


Q ss_pred             eEeeEec----cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          294 LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       294 ~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +..+...    ......+.|+++|+|+.|++...+|.|..+|+.+.
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            3333211    11224679999999999988877999999998843

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.28  E-value=0.01  Score=52.33  Aligned_cols=114  Identities=11%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             EEEecCCCeEEEEeecCCCCeEEE-EecCcceeeeeecc----CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc--
Q 017642          220 CAVSQGVGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--  292 (368)
Q Consensus       220 ~~~~~~~~~~~l~~~g~~dg~i~i-~~~~~~~~~~~~~~----~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~--  292 (368)
                      ...+.++..++++.    ++.||. ........+.+...    -..|..+..+|+|++||..+..+  |.|-.+..+.  
T Consensus        26 ~~~~~n~t~i~~a~----~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~--V~Vv~LP~~~~~   99 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQ----DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE--IFVMEVPWGYSN   99 (452)
T ss_dssp             EEEETTTTEEEEEE----TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE--EEEEECCTTCSC
T ss_pred             EEEEcCCCEEEEEE----CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe--EEEEEecCcccc
Confidence            34566777766654    678887 33323334444332    23578899999999999987764  8998887321  


Q ss_pred             ----------eeEeeEecc----CcccEEEEEEecC---CCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          293 ----------LLQEVRRGA----DRAEIYSLAFSSN---AQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       293 ----------~~~~~~~~~----~~~~v~~l~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                                ..+.+..+.    ...+|..+.|+|-   +..|++-..|+.||+||+......|
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P  163 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP  163 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC
Confidence                      122333321    2457999999995   4589999999999999999855444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.27  E-value=0.074  Score=45.74  Aligned_cols=231  Identities=11%  Similarity=0.084  Sum_probs=124.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      ..+.+|.|.+++..+++|..+.|  |....+.........  ......+..+.+.++..++++ . .     +.|..- .
T Consensus        36 ~~~~~v~~~~~~~~~~~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g-~-~-----g~i~~S-~  105 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVG-E-P-----PIMLHT-T  105 (327)
T ss_dssp             SCEEEEEESSSSCEEEEETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEE-E-T-----TEEEEE-S
T ss_pred             CcEEEEEECCCCcEEEEcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEE-C-C-----CeEEEE-C
Confidence            46999999888888887766654  333333333222211  012446778888875555443 2 2     544432 2


Q ss_pred             CCCcEEEEEe----cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEE-eccCCCeeEEEEecCCCeEEEEeecC
Q 017642          164 HQSRCIGELS----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       164 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      ..|+.-..+.    ..+.+..+.+.+++.+++  .++.|+. ....|+.-..+ ......+..+.+.+++..  +++ + 
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~--~~~-g-  180 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY--VAV-S-  180 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE--EEE-E-
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE--EEE-E-
Confidence            3333222222    234577888777777666  3454432 11223322222 233446777888887653  333 3 


Q ss_pred             CCCeEEE-EecCcceeeee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec--cCcccEEEEEEe
Q 017642          237 QKGQVRV-EHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFS  312 (368)
Q Consensus       237 ~dg~i~i-~~~~~~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~s  312 (368)
                      .+|.+.. ++..+..-..+ ......+..+.+.+++++++ ++.+|. +++.+...++....+...  .....+.++.+.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            3566655 44322222111 23445788999999987654 556777 777753334444333321  122358899999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      +++.+++++. +|.| ++..+.+
T Consensus       259 ~~~~~~~~g~-~g~i-~~S~DgG  279 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL-LCSQDGG  279 (327)
T ss_dssp             SSSCEEEEES-TTCE-EEESSTT
T ss_pred             CCCEEEEEeC-CCeE-EEeCCCC
Confidence            8888776654 6666 3444433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.19  E-value=0.099  Score=45.54  Aligned_cols=230  Identities=10%  Similarity=0.030  Sum_probs=119.1

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCC----eEEEEecCC--CCCCCCCc
Q 017642           86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN----ILALVGGGP--DPQYPLNK  157 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~s~~~--d~~~~~~~  157 (368)
                      .....|+|.|+|+++++-.++.|++++. .+. .....+.  .........++++++    +.++++...  ...-..+.
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4568999999999777665877888863 222 2111111  123345778899886    444443221  00000035


Q ss_pred             EEEEeCCCC-------cEE-EEEe--cCCceeEEEEeeCccEEEeC----------------CcEEEEEcCCCeE-----
Q 017642          158 VMIWDDHQS-------RCI-GELS--FRSEVRSVKLRRDRIIVVLE----------------QKIFVYNFADLKL-----  206 (368)
Q Consensus       158 i~vwd~~~~-------~~~-~~~~--~~~~v~~~~~~~~~~~l~~d----------------~~i~vwd~~~~~~-----  206 (368)
                      |..|+...+       +.+ ..+.  .......++|.|||.+.+..                +.|..++.. ++.     
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence            666765543       111 1122  11234679999999877732                345555543 320     


Q ss_pred             ---EEEE-eccCCCeeEEEEecCCCeEEEEeecCCCC--eEEEEecCc-----------------ceeeeeeccCcceEE
Q 017642          207 ---LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYAS-----------------KRTKFIMAHDSRIAC  263 (368)
Q Consensus       207 ---~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~-----------------~~~~~~~~~~~~i~~  263 (368)
                         ...+ .++.+ ...++|+++...++++-.+ .++  .|.+-....                 ..+..+.........
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence               1111 23333 3458899954455555433 222  222211110                 111122111235678


Q ss_pred             EEEC-------CCCCEEEEEeCCCcEEEEEECCCC-cee--EeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          264 FALT-------QDGQLLATSSTKGTLVRIFNTLDG-TLL--QEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       264 v~~s-------p~g~~l~s~~~dg~~i~iwd~~~~-~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      ++|.       .+|.++++.-..+. |...++... +..  ..+... ....+..+++.|||.++++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence            8883       46766666555566 888887753 332  222211 135789999999998776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.13  E-value=0.096  Score=44.27  Aligned_cols=230  Identities=14%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             CCEEEEEe-C----CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE
Q 017642           97 HGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE  171 (368)
Q Consensus        97 g~~l~~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~  171 (368)
                      +.+++.|+ +    +.+.+||..+..-.....+. ..... ..+....+.+++++|..+ ...-..+.+||..+.+....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP-SRRCR-AGMVYMAGLVFAVGGFNG-SLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS-SCCBS-CEEEEETTEEEEESCBCS-SSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC-ccccc-ceEEEECCEEEEEeCcCC-CccccceEEECCCCCceeeC
Confidence            44556665 2    23778887655433222221 11111 122333556666655332 11125689999888764433


Q ss_pred             Ee--cCCceeEEEEeeCccEEE---eC-----CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC----
Q 017642          172 LS--FRSEVRSVKLRRDRIIVV---LE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ----  237 (368)
Q Consensus       172 ~~--~~~~v~~~~~~~~~~~l~---~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~----  237 (368)
                      -.  ....-.+++.. ++.+++   .+     ..+.+||+.+.+-...-..........+...+ +.++++ .|..    
T Consensus        93 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~-GG~~~~~~  169 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG-GLLYAV-GGYDVASR  169 (302)
T ss_dssp             CCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET-TEEEEE-CCEETTTT
T ss_pred             CCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEEC-CEEEEE-eCCCCCCC
Confidence            22  22122233332 444444   12     35888998776533221111111111111123 344443 2321    


Q ss_pred             --CCeEEEEecCcceeeee---eccCcceEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCceeEeeEeccCcccEE
Q 017642          238 --KGQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       238 --dg~i~i~~~~~~~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                        ...+.+++.....-..+   .........+.+  ++++++.|+.++     . +.+||+.+.+-. .+........-.
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~-~~~~~~~~r~~~  245 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWR-QVADMNMCRRNA  245 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEE-EECCCSSCCBSC
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEe-eCCCCCCccccC
Confidence              12345555444322222   111112223333  677778877643     5 899998876533 222110111111


Q ss_pred             EEEEecCCCEEEEEeCCC-----eEEEEEccCCCC
Q 017642          308 SLAFSSNAQWLAVSSDKG-----TVHVFNLKVNSG  337 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~  337 (368)
                      +++. -++++++.|+.++     .+.+||+++.+=
T Consensus       246 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          246 GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            2222 3677777777553     489999887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.12  E-value=0.097  Score=44.18  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=106.1

Q ss_pred             CCCEEEEEe-C------CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc-
Q 017642           96 DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-  167 (368)
Q Consensus        96 ~g~~l~~~~-d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~-  167 (368)
                      ++.+++.|+ .      +.+.+||..+.+-.....+. ..... ..+....+.++++++..+ ......+.+||..+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~l~v~GG~~~-~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT-RKRRY-VASVSLHDRIYVIGGYDG-RSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS-SCCBS-CEEEEETTEEEEECCBCS-SCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC-hhhcc-ccEEEECCEEEEEcCCCC-CccCceEEEEECCCCCC
Confidence            445566665 2      23778887654432222221 11111 222334556666655331 1112579999988776 


Q ss_pred             --EEEEEe--cCCceeEEEEeeCccEEEe--------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          168 --CIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       168 --~~~~~~--~~~~v~~~~~~~~~~~l~~--------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                        ....-.  ....-.+++.. ++++++.        ...+.+||+.+.+-...-..........+...+ +.++++  |
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~--G  166 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS-GVIYCL--G  166 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET-TEEEEE--C
T ss_pred             CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC-CEEEEE--C
Confidence              333222  22222222332 5555552        236899998776533221111111111122223 344443  3


Q ss_pred             CCC-----CeEEEEecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCC-----CcEEEEEECCCCceeEeeEeccC
Q 017642          236 LQK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       236 ~~d-----g~i~i~~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                      +.+     ..+.+++.....-..+.   ........+.+  ++++++.|+.+     .. +.+||+.+.+-.. +.....
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~  242 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTT-VTSMTT  242 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-ECCCSS
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEE-CCCCCC
Confidence            333     23555554443322221   11112223333  66777777764     35 8999998765432 221101


Q ss_pred             -cccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 017642          303 -RAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (368)
Q Consensus       303 -~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  336 (368)
                       ......+.  -++++++.|+.+     ..|.+||+++.+
T Consensus       243 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          243 PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             11112222  267777777655     357888887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.81  E-value=0.54  Score=47.79  Aligned_cols=169  Identities=7%  Similarity=0.027  Sum_probs=99.1

Q ss_pred             CCCcEEEEeCCCCcEEEEE--ecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          154 PLNKVMIWDDHQSRCIGEL--SFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      ..|.|.+|++..++.....  ..++.|++++-- +|++++ .+.+|++|++...+.++.-...-..+..+.+...++.+ 
T Consensus       862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I-  939 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFI-  939 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEE-
T ss_pred             CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEE-
Confidence            3489999998755433332  367889998755 456666 78999999997655443111111123333444455543 


Q ss_pred             EEeecCCCCeEEE--EecCcceeeeeec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC-------cee---Ee
Q 017642          231 LVCPGLQKGQVRV--EHYASKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-------TLL---QE  296 (368)
Q Consensus       231 l~~~g~~dg~i~i--~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~-------~~~---~~  296 (368)
                       ++ |..-..+.+  |......+..+..  +...++++.|-.++ .++.+..+|. |.++.....       +.+   ..
T Consensus       940 -~v-gD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~vl~~~~~~~~~~~~~~L~~~~~ 1015 (1158)
T 3ei3_A          940 -LV-GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN-LFVCQKDSAATTDEERQHLQEVGL 1015 (1158)
T ss_dssp             -EE-EESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE-EEEEEECTTCCSTTGGGBEEEEEE
T ss_pred             -EE-EEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCc-EEEEecCCCCCCccccceeeeEEE
Confidence             32 333344444  6655555554433  44568888886554 6777899999 998876431       222   22


Q ss_pred             eEeccCcccEEEEE---EecC---------CCEEEEEeCCCeEEEEE
Q 017642          297 VRRGADRAEIYSLA---FSSN---------AQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       297 ~~~~~~~~~v~~l~---~sp~---------~~~l~s~s~dg~i~iwd  331 (368)
                      |..   ...|+++.   +.+.         ...++.++.+|.|.+.-
T Consensus      1016 fhl---G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A         1016 FHL---GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             EEC---SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred             EeC---CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence            222   33566665   2222         23467778899887764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.61  E-value=0.27  Score=42.53  Aligned_cols=159  Identities=12%  Similarity=-0.010  Sum_probs=86.9

Q ss_pred             cCCceeEEEEeeCccEEE--e-CCcEEEEEcCCCeEEEE--E----eccCCCeeEEEEecC---CCeEEEEeecCCCCeE
Q 017642          174 FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQ--I----ETIANPKGLCAVSQG---VGSLVLVCPGLQKGQV  241 (368)
Q Consensus       174 ~~~~v~~~~~~~~~~~l~--~-d~~i~vwd~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~~~l~~~g~~dg~i  241 (368)
                      .-...+.|+|.|||.+++  . .|.|++++..+++....  +    .........++++|+   +..+++.++...++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            445678999999999888  3 68899998765553221  1    122345677999996   4566665543333333


Q ss_pred             EEEecCc-----------ceee-eee-ccCcceEEEEECCCCCEEEEEeC-------------CCcEEEEEECCCCc---
Q 017642          242 RVEHYAS-----------KRTK-FIM-AHDSRIACFALTQDGQLLATSST-------------KGTLVRIFNTLDGT---  292 (368)
Q Consensus       242 ~i~~~~~-----------~~~~-~~~-~~~~~i~~v~~sp~g~~l~s~~~-------------dg~~i~iwd~~~~~---  292 (368)
                      .-+....           +.+. .+. .....-..|.|.|||.++++.+.             .|. |.-.+.. ++   
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~-IlRi~~d-G~ip~  187 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK-ILRMTPD-GEPAP  187 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC-EEEECTT-SSBCT
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE-EEEEeCC-CCccC
Confidence            3233222           1111 121 11223467999999987776542             244 4434432 22   


Q ss_pred             -----eeEeeEeccCcccEEEEEEecCCCEEEEE-eCCCeEEEEEccCCC
Q 017642          293 -----LLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVNS  336 (368)
Q Consensus       293 -----~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~  336 (368)
                           ....+..+ +. ....++|+|+|.++++= +.|+.=.|-.+..+.
T Consensus       188 ~nPf~~~~i~a~G-~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~  235 (347)
T 3das_A          188 GNPFPGSPVYSYG-HR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGD  235 (347)
T ss_dssp             TCSSTTCCEEEBC-CS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTC
T ss_pred             CCCCCCCeEEeeC-CC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCC
Confidence                 11122222 32 45789999998866554 334434444444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.53  E-value=0.34  Score=41.93  Aligned_cols=74  Identities=12%  Similarity=0.161  Sum_probs=36.8

Q ss_pred             CCCEEEEEe--CCeEEEEEecCCCcceEE--EcccCCceeEEEEEEeCCeEEEEecC-C--C-CCCCCCcEEEEeCCCCc
Q 017642           96 DHGCFAAGT--DHGFRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGG-P--D-PQYPLNKVMIWDDHQSR  167 (368)
Q Consensus        96 ~g~~l~~~~--d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~-~--d-~~~~~~~i~vwd~~~~~  167 (368)
                      ++++++.|+  .+.+.+||..+.......  .+. .....-.++....+.+++++|. .  + ..-....+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p-~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFP-GGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCT-TCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCC-CCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            677777777  345888887642222221  121 0111112233335666666554 1  1 00011578999988876


Q ss_pred             EEE
Q 017642          168 CIG  170 (368)
Q Consensus       168 ~~~  170 (368)
                      ...
T Consensus        98 W~~  100 (357)
T 2uvk_A           98 WVK  100 (357)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.53  E-value=0.26  Score=42.90  Aligned_cols=142  Identities=11%  Similarity=0.001  Sum_probs=77.8

Q ss_pred             CCceeEEEEeeCccEEE--eCCcEEEEEcCCCe-EEEEEe---ccCCCeeEEEEecC---CCeEEEEeec-CCC----Ce
Q 017642          175 RSEVRSVKLRRDRIIVV--LEQKIFVYNFADLK-LLHQIE---TIANPKGLCAVSQG---VGSLVLVCPG-LQK----GQ  240 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~~l~~~g-~~d----g~  240 (368)
                      -.....|+|.|+|++++  .++.|+++| .+++ .+..+.   ........++++|+   +..++++.+. ..+    ..
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            35678999999999877  468999997 4565 222111   12245677999998   6676766532 112    33


Q ss_pred             EEEEecCcc--------ee-eeeec-cCcceEEEEECCCCCEEEEEeC-------------CCcEEEEEECCCCc-----
Q 017642          241 VRVEHYASK--------RT-KFIMA-HDSRIACFALTQDGQLLATSST-------------KGTLVRIFNTLDGT-----  292 (368)
Q Consensus       241 i~i~~~~~~--------~~-~~~~~-~~~~i~~v~~sp~g~~l~s~~~-------------dg~~i~iwd~~~~~-----  292 (368)
                      |..++....        .+ ..+.. .......|+|.|||.++++.+.             .|. |.-++.. ++     
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~-I~ri~~d-G~~p~~n  184 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK-ILRVDEE-GRPPADN  184 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE-EEEECTT-SCCCTTS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE-EEEEcCC-CCCCCCC
Confidence            433333322        11 11221 1123467999999986666433             134 5555543 32     


Q ss_pred             ---eeEeeEeccCcccEEEEEEec-CCCEEEEE
Q 017642          293 ---LLQEVRRGADRAEIYSLAFSS-NAQWLAVS  321 (368)
Q Consensus       293 ---~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~  321 (368)
                         ....+..+ + .....++|+| +|+++++-
T Consensus       185 pf~~~~i~a~G-~-rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          185 PFPNSPIWSYG-H-RNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             SSTTCCEEEEC-C-SCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCcEEEEc-c-CCcceEEEeCCCCCEEEEe
Confidence               01122221 2 2356899999 66665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.51  E-value=0.36  Score=41.93  Aligned_cols=241  Identities=8%  Similarity=0.023  Sum_probs=121.3

Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCeEEEEEecCCCcceEEE---cccCCceeEEEEEEeCC----eEEEEecCCCCCC--CC
Q 017642           86 PTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREIFRRD---FERGGGIGVVEMLFRCN----ILALVGGGPDPQY--PL  155 (368)
Q Consensus        86 ~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~s~~~d~~~--~~  155 (368)
                      .....|+|.|+|+ ++++-..+.|++++.+.........   +..........++++++    +.++++......-  ..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3568999999999 7666557778888743211000000   10122345678899873    4444432110000  00


Q ss_pred             CcEEEEeCCCC--c--EEEE-Ee-c------CCceeEEEEeeCccEEEe--C--------------CcEEEEEcCCCe--
Q 017642          156 NKVMIWDDHQS--R--CIGE-LS-F------RSEVRSVKLRRDRIIVVL--E--------------QKIFVYNFADLK--  205 (368)
Q Consensus       156 ~~i~vwd~~~~--~--~~~~-~~-~------~~~v~~~~~~~~~~~l~~--d--------------~~i~vwd~~~~~--  205 (368)
                      ..|..|+...+  +  .... +. .      ......++|.|||.+.+.  |              |.|.-+|.. ++  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCC
Confidence            35666665432  1  1111 11 1      112467999999977762  2              356666654 22  


Q ss_pred             -----------EEEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC-c------------------------
Q 017642          206 -----------LLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-S------------------------  248 (368)
Q Consensus       206 -----------~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~-~------------------------  248 (368)
                                 ....+. ++. ....++|.+....++++-.| .++.=.|.... +                        
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                       111221 222 24568899854555554322 22111221110 0                        


Q ss_pred             -------ceeeeeeccCcceEEEEECC-------CCCEEEEEeCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEec
Q 017642          249 -------KRTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSS  313 (368)
Q Consensus       249 -------~~~~~~~~~~~~i~~v~~sp-------~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp  313 (368)
                             ..+..+ .+...+..++|..       +|+++++.-..+. |...++..++.+.....- .....+..|++.|
T Consensus       255 ~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          255 EIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             SSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                   000111 1223466777753       4666666555666 888887765443322110 1134789999999


Q ss_pred             CCCEEEEEe-CCCeEEEEEcc
Q 017642          314 NAQWLAVSS-DKGTVHVFNLK  333 (368)
Q Consensus       314 ~~~~l~s~s-~dg~i~iwd~~  333 (368)
                      ||.++++.. .+|  +||.+.
T Consensus       333 dG~lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          333 DGYLYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             TSCEEEEECSTTE--EEEEEE
T ss_pred             CCcEEEEEeCCCC--EEEEEe
Confidence            999766543 344  556553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.46  E-value=0.34  Score=41.03  Aligned_cols=229  Identities=13%  Similarity=0.062  Sum_probs=105.8

Q ss_pred             CCCCEEEEEe-C----CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC---CCCCCCCcEEEEeCCCC
Q 017642           95 QDHGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        95 ~~g~~l~~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---d~~~~~~~i~vwd~~~~  166 (368)
                      -++.+++.|+ +    +.+.+||..+.+-.....+. ..... ..+....+.+++++|..   +.......+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ-VPRSG-LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS-SCCBS-CEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC-ccccc-ceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            3566666666 2    23788887654433222221 11111 12233355666665531   10001146889998877


Q ss_pred             cEEEEEe--cCCceeEEEEeeCccEEEe--------CCcEEEEEcCCCeEEEE--EeccCCCeeEEEEecCCCeEEEEee
Q 017642          167 RCIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQ--IETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       167 ~~~~~~~--~~~~v~~~~~~~~~~~l~~--------d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      +....-.  ....-.+++.. ++++++.        -..+.+||+.+.+-...  +.........+.+   ++.++++  
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~--  174 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAV--  174 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEE--
T ss_pred             eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEE--
Confidence            5433221  11111222222 5555542        24688999877653221  1111111122222   3344443  


Q ss_pred             cCCC-----CeEEEEecCcceeeee---eccCcceEEEEECCCCCEEEEEeCC-----CcEEEEEECCCCceeEeeEecc
Q 017642          235 GLQK-----GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       235 g~~d-----g~i~i~~~~~~~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      |+.+     ..+.+++.....-..+   .........+.+  ++++++.|+.+     .. +.+||+.+.+-.. +....
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p  250 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTF-VAPMK  250 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-CCCCS
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEE-CCCCC
Confidence            3333     2355555444332222   111112233333  67777777654     45 8999988765332 21110


Q ss_pred             CcccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  336 (368)
                      ....-.+++. -++++++.|+.+     ..+.+||+++.+
T Consensus       251 ~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          251 HRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1111112222 267777777643     457888887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.34  E-value=0.4  Score=40.58  Aligned_cols=175  Identities=9%  Similarity=0.004  Sum_probs=96.3

Q ss_pred             EEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---e-C-------------CcEEE
Q 017642          136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-E-------------QKIFV  198 (368)
Q Consensus       136 ~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~-d-------------~~i~v  198 (368)
                      ++..+.+++.....+     +.|...+..... ...+.. .  .+--+++++.++.   . +             ..|+.
T Consensus        22 ~~~g~~iy~~n~~d~-----~~ly~~~~dg~~-~~~l~~-~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~   92 (302)
T 3s25_A           22 CESDGEVFFSNTNDN-----GRLYAMNIDGSN-IHKLSN-D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR   92 (302)
T ss_dssp             EEETTEEEEEEGGGT-----TEEEEEETTSCS-CEEEEE-E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred             EEeCCEEEEEeCCCC-----ceEEEEcCCCCC-CEEccC-C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence            355666666655433     677777754333 333321 1  1234577777776   1 2             35777


Q ss_pred             EEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe-ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe
Q 017642          199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       199 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~  277 (368)
                      .++..++.. .+..  .  ....++++++.++++- +...+..|+.-+.++.....+..+..    ..++++++.|+-.+
T Consensus        93 i~~dg~~~~-~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~  163 (302)
T 3s25_A           93 IKRNGHGST-VLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNN  163 (302)
T ss_dssp             EETTSCCCE-EEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEEC
T ss_pred             EeCCCCcce-Eeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEe
Confidence            777655432 2321  1  1236788898866653 11234555555556655555555433    34677888777666


Q ss_pred             C-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCC--CeEEEEEccCC
Q 017642          278 T-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK--GTVHVFNLKVN  335 (368)
Q Consensus       278 ~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~iwd~~~~  335 (368)
                      . ... |.+.++..+... .+..  .  ... ..++|++.+|+-...+  ..|..-++...
T Consensus       164 ~g~~~-Iy~~~l~g~~~~-~l~~--~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          164 PKNGQ-LYRYDTASQSEA-LFYD--C--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             TTTCC-EEEEETTTTEEE-EEEC--S--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             CCCce-EEEEECCCCCEE-EEeC--C--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence            5 456 888887665544 3322  1  122 2356899888766543  24555555443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.29  E-value=0.48  Score=40.96  Aligned_cols=229  Identities=9%  Similarity=0.005  Sum_probs=119.5

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc---cCCceeEEEEEEeCC----eEEEEe--cCCCC
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCN----ILALVG--GGPDP  151 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~s--~~~d~  151 (368)
                      ...-...+.|+|.|||+++++-. .+.|++++.+.+.......+.   .........++++++    +.++++  ...+ 
T Consensus        28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~-  106 (347)
T 3das_A           28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD-  106 (347)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS-
T ss_pred             ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC-
Confidence            33445678999999999888877 666888875433332222221   134556788999874    333332  1222 


Q ss_pred             CCCCCcEEEEeCCCC----------cEEE-EEe--cCCceeEEEEeeCccEEEe----------------CCcEEEEEcC
Q 017642          152 QYPLNKVMIWDDHQS----------RCIG-ELS--FRSEVRSVKLRRDRIIVVL----------------EQKIFVYNFA  202 (368)
Q Consensus       152 ~~~~~~i~vwd~~~~----------~~~~-~~~--~~~~v~~~~~~~~~~~l~~----------------d~~i~vwd~~  202 (368)
                          +.|.-|....+          +.+. .+.  .......|.|.|||.+.+.                .|.|.-++..
T Consensus       107 ----~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          107 ----NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             ----EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             ----CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence                56666655431          1221 122  1223467999999987762                1455555543


Q ss_pred             CCe--------EEEEE-eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEe-cCcc------------------eeeee
Q 017642          203 DLK--------LLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH-YASK------------------RTKFI  254 (368)
Q Consensus       203 ~~~--------~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~-~~~~------------------~~~~~  254 (368)
                       ++        ....+ .++.++ ..++|.+++. ++++-.| .++.-.|.. ..+.                  .+..+
T Consensus       183 -G~ip~~nPf~~~~i~a~G~RNp-~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~  258 (347)
T 3das_A          183 -GEPAPGNPFPGSPVYSYGHRNV-QGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW  258 (347)
T ss_dssp             -SSBCTTCSSTTCCEEEBCCSBC-CEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE
T ss_pred             -CCccCCCCCCCCeEEeeCCCCc-ceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec
Confidence             22        01112 234333 4588999765 3433222 333233311 1110                  11112


Q ss_pred             eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCcee---EeeEeccCcccEEEEEEecCCCEEEEEe
Q 017642          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSS  322 (368)
Q Consensus       255 ~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~s~s  322 (368)
                      ..+......|+|. +|.+++..-..+. |....+.....+   ..+... ..+.+.+|+..|||.++++..
T Consensus       259 ~~~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          259 STDEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CTTTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence            2222345677776 4555555555555 666666544321   122211 236799999999998776654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.29  E-value=0.42  Score=40.32  Aligned_cols=227  Identities=10%  Similarity=0.062  Sum_probs=106.4

Q ss_pred             CCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 017642           97 HGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (368)
Q Consensus        97 g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  173 (368)
                      +.+++.|+   .+.+.+||..+.+-.....+. ..... ..+....+.+++++|..  ......+.+||..+++....-.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRD-AACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCS-CCCBS-CEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCC-cccce-eEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCC
Confidence            33555665   234888887665433222221 11111 12223355566665532  1122679999998876543322


Q ss_pred             --cCCceeEEEEeeCccEEE---eC------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC-----
Q 017642          174 --FRSEVRSVKLRRDRIIVV---LE------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-----  237 (368)
Q Consensus       174 --~~~~v~~~~~~~~~~~l~---~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~-----  237 (368)
                        ....-.+++.. ++++++   .+      ..+.+||..+.+-...-..........+...++ .++++ .|..     
T Consensus        88 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~-GG~~~~~~~  164 (306)
T 3ii7_A           88 PPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANG-LIYVC-GGSLGNNVS  164 (306)
T ss_dssp             CSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEE-CCEESCTTT
T ss_pred             CCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECC-EEEEE-CCCCCCCCc
Confidence              22222222222 555544   22      458999998765332211111111111122233 44443 2321     


Q ss_pred             ---CCeEEEEecCcceeeeeec---cCcceEEEEECCCCCEEEEEeCC-----CcEEEEEECCCCceeEeeEecc-Cccc
Q 017642          238 ---KGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGA-DRAE  305 (368)
Q Consensus       238 ---dg~i~i~~~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~~~~~~~~~~-~~~~  305 (368)
                         -..+.+++.....-..+..   ....-..+.+  ++++++.|+.+     .. +.+||+.+.+-.. +.... ....
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~-~~~~p~~r~~  240 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKM-VSPMPWKGVT  240 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCC-EEEEETTTTEEEE-CCCCSCCBSC
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCce-EEEeeCCCCcEEE-CCCCCCCccc
Confidence               2334555554433222221   1112222333  66777777653     34 8999988764332 21110 1112


Q ss_pred             EEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 017642          306 IYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  336 (368)
                      ...+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            222222  67788888744     568889987754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.056  Score=46.58  Aligned_cols=107  Identities=14%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEE---eCC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF---RCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS  173 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  173 (368)
                      ++++++ |+.|.-+|.++++........  .....+....   ..+ ..+++....|     |.|..++..+|.....+.
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~   84 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLS   84 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeec
Confidence            344444 666777776666555443321  0011111100   012 3333332344     999999999886665554


Q ss_pred             cCCcee--EEEE------------eeCccEEE--eCCcEEEEEcCCCeEEEEEec
Q 017642          174 FRSEVR--SVKL------------RRDRIIVV--LEQKIFVYNFADLKLLHQIET  212 (368)
Q Consensus       174 ~~~~v~--~~~~------------~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~  212 (368)
                      -...+.  -+..            +.++.+++  .++.+...|+++|+.+..+..
T Consensus        85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            222111  1111            24566665  689999999999999998864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.25  E-value=1.2  Score=45.23  Aligned_cols=171  Identities=12%  Similarity=0.145  Sum_probs=101.0

Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEe---eC-ccEEE-------------eCCcEEEEEcCCCeEEEEE-eccCC
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLR---RD-RIIVV-------------LEQKIFVYNFADLKLLHQI-ETIAN  215 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~---~~-~~~l~-------------~d~~i~vwd~~~~~~~~~~-~~~~~  215 (368)
                      +.|++.|..+.+.+..+.  ....+.+++.-   .+ ..+++             ..|.|++|++..++..... ....+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            468899988888877776  45556666532   22 23444             1368999999755432222 12355


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeec-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCC-Cce
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTL  293 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~-~~~  293 (368)
                      ++.+++-- +| + +++.   ....+++|+...+....... +-..|..+.....+.+++.|..-.. |.++..+. ...
T Consensus       887 ~v~al~~~-~g-~-Lla~---ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~~~~  959 (1158)
T 3ei3_A          887 AVYSMVEF-NG-K-LLAS---INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPMEGN  959 (1158)
T ss_dssp             CEEEEEEE-TT-E-EEEE---ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETTTTE
T ss_pred             cCEEEeee-CC-E-EEEE---cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcCCCe
Confidence            66665432 33 4 3333   24789997766542211211 1111332233335778888888777 76654332 233


Q ss_pred             eEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 017642          294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       294 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~  334 (368)
                      +..+........++++.|-.++ .++.+..+|.|.+.....
T Consensus       960 L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          960 FEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            4455554456689999987654 667788999999999876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.21  E-value=0.54  Score=40.78  Aligned_cols=190  Identities=14%  Similarity=0.111  Sum_probs=100.5

Q ss_pred             eEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE--EEEEe----cCCceeEEEEeeC----ccEEE--e-C----
Q 017642          131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS----FRSEVRSVKLRRD----RIIVV--L-E----  193 (368)
Q Consensus       131 ~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~--~~~~~----~~~~v~~~~~~~~----~~~l~--~-d----  193 (368)
                      .-..+++.+++.++++...      +.|++++  +++.  +..+.    .......++++|+    +.+.+  . .    
T Consensus        32 ~P~~ia~~pdG~l~V~e~~------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERP------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CEEEEEECTTSCEEEEETT------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CceEEEEcCCCeEEEEeCC------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            3567888888877666543      8899998  4432  22221    2457889999998    44444  2 2    


Q ss_pred             -CcEEEEEcCCCe-----EE-EEEe---ccCCCeeEEEEecCCCeEEEEeecCC------------CCeEEEEecCcc--
Q 017642          194 -QKIFVYNFADLK-----LL-HQIE---TIANPKGLCAVSQGVGSLVLVCPGLQ------------KGQVRVEHYASK--  249 (368)
Q Consensus       194 -~~i~vwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~l~~~g~~------------dg~i~i~~~~~~--  249 (368)
                       +.|..|+...++     .+ ..+.   ........++|.++| .++++. |..            .|.|.-.+.++.  
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~-G~~~~~~~~~d~~~~~g~I~ri~~dG~~p  181 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTT-GEVYERELAQDLASLGGKILRLTPEGEPA  181 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEEC-CCTTCGGGGGCTTCSSSEEEEECTTSSBC
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEE-CCCCCCccccCCCCCceEEEEEcCCCCCC
Confidence             678888876432     11 1122   111223579999999 455553 421            134433333331  


Q ss_pred             -----------eeeee-eccCcceEEEEECC-CCCEEEEEeCCCcEE------EEEECCCCc------------------
Q 017642          250 -----------RTKFI-MAHDSRIACFALTQ-DGQLLATSSTKGTLV------RIFNTLDGT------------------  292 (368)
Q Consensus       250 -----------~~~~~-~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i------~iwd~~~~~------------------  292 (368)
                                 ....+ .++. ....++|+| +|+++++-...+. +      .|.-+..+.                  
T Consensus       182 ~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g~~~-~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  259 (352)
T 2ism_A          182 PGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHGPSG-EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD  259 (352)
T ss_dssp             TTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             CCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcCCCC-CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence                       11111 2232 356789999 6665544332221 1      233222222                  


Q ss_pred             eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ++..+.   +......++| .+|.++++.-..+.|...+++...
T Consensus       260 p~~~~~---~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          260 PLYFWP---QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             CSEECT---TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEET
T ss_pred             CeEecC---CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCC
Confidence            111221   1234567777 567766666566778877776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.92  E-value=1.3  Score=42.74  Aligned_cols=222  Identities=14%  Similarity=0.101  Sum_probs=126.3

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...|.++.-..+| .|.+|+++++..||..+..-.  .... .....+..+....+.+++.+.        +.|..+|..
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~Gl~~yd~~~~~f~--~~~~-~~~~~i~~i~~~~g~lWigt~--------~Gl~~~~~~  129 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNGILVYNYRADRYE--QPET-DFPTDVRTMALQGDTLWLGAL--------NGLYTYQLQ  129 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTEEEEEETTTTEEC--CCSC-CCCSCEEEEEEETTEEEEEET--------TEEEEEETT
T ss_pred             CceEEEEEEcCCC-cEEEEeCCCeEEEeCCCCEEE--Cccc-CCCceEEEEEecCCcEEEEcC--------CcceeEeCC
Confidence            3468888777766 455667778999997653221  1110 112234555545555555543        458889977


Q ss_pred             CCcEEEEEe------cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEecc------CCCeeEEEEecCCCeEEE
Q 017642          165 QSRCIGELS------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       165 ~~~~~~~~~------~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l  231 (368)
                      +++.. .+.      ....|.++....++.+.+ .++.|..+|..+++... +...      ...|.++....++..+++
T Consensus       130 ~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWi  207 (758)
T 3ott_A          130 SRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWI  207 (758)
T ss_dssp             TCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEE
T ss_pred             CCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEE
Confidence            66543 331      234688888887777766 66678889987765432 2111      123566666666665565


Q ss_pred             EeecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec------cCcc
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------ADRA  304 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~------~~~~  304 (368)
                      .+   ..| +..++........+. .....|.++....+|.+.+ |+.+ . |.+++..+++.. .+...      -...
T Consensus       208 gt---~~G-l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-G-l~~~~~~~~~~~-~~~~~~~~~~~l~~~  279 (758)
T 3ott_A          208 GT---EGY-LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-G-LYVYHNDTTPLQ-HIIHDSRNIQSLTNN  279 (758)
T ss_dssp             EE---EEE-EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-E-EEEECCTTSCCE-EECCCTTCTTSCSCS
T ss_pred             EE---CCC-CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-c-eeEEecCCCcEE-EEEcCCCCcCcCCcC
Confidence            43   234 444444333332222 1234588888888887554 4444 5 889987765533 22210      0123


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEE
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVF  330 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iw  330 (368)
                      .|.++....+|.+.+ |+..| +.++
T Consensus       280 ~i~~i~~D~~g~lWi-GT~~G-l~~~  303 (758)
T 3ott_A          280 IIWNIFADQEHNIWL-GTDYG-ISLS  303 (758)
T ss_dssp             CEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred             eEEEEEEcCCCCEEE-EeCCc-cccc
Confidence            588888887777554 44456 4433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.85  E-value=0.71  Score=39.08  Aligned_cols=228  Identities=12%  Similarity=0.061  Sum_probs=102.5

Q ss_pred             EEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecC-----CCCCCCCCcEEEEeCCCCcEEEEEe-
Q 017642          100 FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIGELS-  173 (368)
Q Consensus       100 l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~d~~~~~~~i~vwd~~~~~~~~~~~-  173 (368)
                      ++.|+ +.+.+||..+.+-.. ..+.........++....+.+++++|.     .........+.+||..+++....-. 
T Consensus         8 ~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            34444 568889877655432 222111122233344445666666662     1000001237889988876432211 


Q ss_pred             -cCCceeEEEEeeCccEEEeC-----------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC---
Q 017642          174 -FRSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK---  238 (368)
Q Consensus       174 -~~~~v~~~~~~~~~~~l~~d-----------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d---  238 (368)
                       ....-.+++.. ++++++..           ..+.+||..+.+-...-..........+...++ .+++ ..|..+   
T Consensus        86 p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv-~GG~~~~~~  162 (315)
T 4asc_A           86 PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMD-LVYV-IGGKGSDRK  162 (315)
T ss_dssp             SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT-EEEE-ECCBCTTSC
T ss_pred             CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECC-EEEE-EeCCCCCCc
Confidence             11111222232 44444411           358999998764322111111111112222333 4443 324312   


Q ss_pred             --CeEEEEecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCCCc----EEEEEECCCCceeEeeEeccCcccEEEE
Q 017642          239 --GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRAEIYSL  309 (368)
Q Consensus       239 --g~i~i~~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~~v~~l  309 (368)
                        ..+.+++.....-..+.   .......++.+  ++++++.|+.++.    .+.+||+.+.+-.. +........-.++
T Consensus       163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~  239 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEAFPQERSSLSL  239 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECCCSSCCBSCEE
T ss_pred             ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE-CCCCCCcccceeE
Confidence              23555554443222221   11112223333  6777777776541    28889987764332 2211011111122


Q ss_pred             EEecCCCEEEEEeCC--------------CeEEEEEccCCC
Q 017642          310 AFSSNAQWLAVSSDK--------------GTVHVFNLKVNS  336 (368)
Q Consensus       310 ~~sp~~~~l~s~s~d--------------g~i~iwd~~~~~  336 (368)
                      +. -++++++.|+.+              ..|.+||+++.+
T Consensus       240 ~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          240 VS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            22 256777777653              247788887764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.74  E-value=1.1  Score=40.39  Aligned_cols=106  Identities=11%  Similarity=0.048  Sum_probs=58.0

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-eEEEEEecCCCcceEEEccc-----CCceeEEEEEEeC----CeEEEEecCC------
Q 017642           86 PTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRC----NILALVGGGP------  149 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d~-~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~s~~~------  149 (368)
                      ...+.|+|.|+|+++++-..+ .|++++...+.......+..     ......+.+++++    ++.++++...      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            356799999999988876665 47777644333322222321     1345677899997    4444444321      


Q ss_pred             CCC-CCCCcEEEEeCCCC--c-----EEEE-Ee--cCCceeEEEEeeCccEEE
Q 017642          150 DPQ-YPLNKVMIWDDHQS--R-----CIGE-LS--FRSEVRSVKLRRDRIIVV  191 (368)
Q Consensus       150 d~~-~~~~~i~vwd~~~~--~-----~~~~-~~--~~~~v~~~~~~~~~~~l~  191 (368)
                      +.. -....|.-|+...+  +     .+.. +.  .......|+|.+||.+.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv  159 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY  159 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence            000 00034555554322  1     1111 22  123478899999998777

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.53  E-value=0.48  Score=41.15  Aligned_cols=140  Identities=7%  Similarity=0.021  Sum_probs=75.2

Q ss_pred             CceeEEEEeeCcc-EEE--eCCcEEEEEcCCCeEEEEEe-------ccCCCeeEEEEecC---CCeEEEEeecC-CC---
Q 017642          176 SEVRSVKLRRDRI-IVV--LEQKIFVYNFADLKLLHQIE-------TIANPKGLCAVSQG---VGSLVLVCPGL-QK---  238 (368)
Q Consensus       176 ~~v~~~~~~~~~~-~l~--~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~---~~~~~l~~~g~-~d---  238 (368)
                      ...+.|+|.|+|+ +++  ..|.|++++. +++....+.       ........++++|+   +..+++..+.. .+   
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            4568999999998 777  4789999985 444321111       12234567899997   66667664321 11   


Q ss_pred             -CeEEEEecCcc-----eeee----ee---ccCcceEEEEECCCCCEEEEEeC-------------CCcEEEEEECCCCc
Q 017642          239 -GQVRVEHYASK-----RTKF----IM---AHDSRIACFALTQDGQLLATSST-------------KGTLVRIFNTLDGT  292 (368)
Q Consensus       239 -g~i~i~~~~~~-----~~~~----~~---~~~~~i~~v~~sp~g~~l~s~~~-------------dg~~i~iwd~~~~~  292 (368)
                       ..|..+..+..     ....    +.   ........|+|.|||.++++.+.             .|. |.-+|.. ++
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~-I~ri~~d-G~  174 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGK-LVRLTDQ-GE  174 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTE-EEEEETT-SC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeE-EEEECCC-CC
Confidence             12332332211     1111    11   11112357999999975555433             245 5556653 22


Q ss_pred             -------------eeEeeEeccCcccEEEEEEec-CCCEEEE
Q 017642          293 -------------LLQEVRRGADRAEIYSLAFSS-NAQWLAV  320 (368)
Q Consensus       293 -------------~~~~~~~~~~~~~v~~l~~sp-~~~~l~s  320 (368)
                                   ....+..+ + .....++|.| +|+++++
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G-~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYG-I-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEEC-C-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEEc-C-cCccceEEECCCCCEEEE
Confidence                         11122221 2 2478999999 5655544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.48  E-value=0.38  Score=38.40  Aligned_cols=149  Identities=13%  Similarity=-0.025  Sum_probs=82.8

Q ss_pred             CceeEEEEeeCccEEE-eCCcEEEEEcCCCeE------EEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          176 SEVRSVKLRRDRIIVV-LEQKIFVYNFADLKL------LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~------~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      ..+..++|+|+|.+.+ .+|.++-.+..+.+.      -..+- ..-.....+.|.++|..  .+.   .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~L--Yav---~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYL--YAV---SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCE--EEE---ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCE--EEe---CCCEEEEeCCC
Confidence            4678999999998777 788877777644211      11221 01112467888888862  332   46888664432


Q ss_pred             c-cee------eee-eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-----eEeeEeccCcccEEEEEEecC
Q 017642          248 S-KRT------KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-----LQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       248 ~-~~~------~~~-~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      . ..-      ..+ ..--..+..|.|.|+|.+.+..  |+. ++-+...++..     .........-..-.-+.|.++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            1 110      011 1112468999999999876666  776 54443322210     011111112224455779999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCC
Q 017642          315 AQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      |.+.++.  ++  ++|....++
T Consensus       193 G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          193 GTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             SCEEEEE--TT--EEEEESCCC
T ss_pred             CcEEEEe--CC--eEEecCCcc
Confidence            9887766  67  566654443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.23  E-value=0.55  Score=42.99  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=67.6

Q ss_pred             CEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCc-----------ceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCC
Q 017642           87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFRE-----------IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY  153 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~  153 (368)
                      ....+.++|||+++++++  +..+.|++++....           ......  .-...-+...|++++.++.+.--|   
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTtlfid---  398 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTTLFID---  398 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEEETTT---
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEeeeeec---
Confidence            345678899999998888  77799999874221           122222  244567788999999888887666   


Q ss_pred             CCCcEEEEeCCCC----------cEEEEEecCCceeEEEE------eeCccEEE
Q 017642          154 PLNKVMIWDDHQS----------RCIGELSFRSEVRSVKL------RRDRIIVV  191 (368)
Q Consensus       154 ~~~~i~vwd~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~  191 (368)
                        .+|.-|++...          ..+..+.....+-.+..      .++|++++
T Consensus       399 --SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          399 --SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             --TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred             --ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence              89999998653          45556653344444433      46788887

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.19  E-value=1.7  Score=39.13  Aligned_cols=103  Identities=13%  Similarity=-0.034  Sum_probs=58.9

Q ss_pred             CCceeEEEEeeCccEEEe--C-CcEEEEEcCCCeEEE--EEec------cCCCeeEEEEecC---CCeEEEEeecC----
Q 017642          175 RSEVRSVKLRRDRIIVVL--E-QKIFVYNFADLKLLH--QIET------IANPKGLCAVSQG---VGSLVLVCPGL----  236 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~~--d-~~i~vwd~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~~~l~~~g~----  236 (368)
                      -...+.|+|.|+|++++.  . +.|++++..+++...  .+..      .......++|+|+   +..+++..+..    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            346789999999998882  3 368888865554322  2211      1334557999997   77777766420    


Q ss_pred             -------CCCeEEE-EecCc------ceeee-ee-ccCcceEEEEECCCCCEEEEEe
Q 017642          237 -------QKGQVRV-EHYAS------KRTKF-IM-AHDSRIACFALTQDGQLLATSS  277 (368)
Q Consensus       237 -------~dg~i~i-~~~~~------~~~~~-~~-~~~~~i~~v~~sp~g~~l~s~~  277 (368)
                             .....++ ++...      +.+.. +. ........|+|.|||+++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   0122223 22111      11111 21 1123468999999999666544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.77  E-value=4.1  Score=37.47  Aligned_cols=218  Identities=10%  Similarity=-0.022  Sum_probs=116.7

Q ss_pred             CCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCC--CCC------------C
Q 017642           95 QDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQ--YPL------------N  156 (368)
Q Consensus        95 ~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~--~~~------------~  156 (368)
                      -||++|..-.  ...|...+++..+......+.  ....+..+.+.  |+..+++.+++...  -.|            +
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iP--n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~  217 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVP--NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT  217 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCC--CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence            4788998888  333878888887776555553  33444455553  44444443333210  001            1


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE------------------------------------------eCC
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV------------------------------------------LEQ  194 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------------------------------------------~d~  194 (368)
                      .....|..+.+....+...+....+...+++.+.+                                          .+|
T Consensus       218 ~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          218 MYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            12223444444444433333343444444554443                                          011


Q ss_pred             -cEEEEEcCC----C-eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-------ce-------eeee
Q 017642          195 -KIFVYNFAD----L-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-------KR-------TKFI  254 (368)
Q Consensus       195 -~i~vwd~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-------~~-------~~~~  254 (368)
                       .+.+.|.+.    + ..+..+.....+ ..+.++|||+++++  +|-.+.++.+.+...       +.       ....
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv~vsPDGkyi~v--~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~  374 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNP-HGCNTSSDGKYFIA--AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP  374 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSC-CCEEECTTSCEEEE--ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCC-cceeeCCCCCEEEE--cCCCCCeEEEEEeehhhhhhhccccCcccceEeec
Confidence             355555544    2 122333333333 34789999997443  477788998865542       11       1112


Q ss_pred             eccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----------ceeEeeEeccCcccEEEEEE------ecCCCEE
Q 017642          255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEVRRGADRAEIYSLAF------SSNAQWL  318 (368)
Q Consensus       255 ~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~l~~------sp~~~~l  318 (368)
                      + -.-.....+|.++|....+.-.|.. |..|++...          ..+..+..+.   .+-.+.-      .+||++|
T Consensus       375 e-~GlGPlHt~Fd~~G~aYTtlfidSq-vvkWni~~a~~~~~g~~~~~v~~k~dv~Y---qpGH~~~~~get~~~dGk~l  449 (638)
T 3sbq_A          375 E-LGLGPLHTTFDGRGNAYTTLFIDSQ-VVKWNMEEAVRAYKGEKVNYIKQKLDVHY---QPGHLHASLCETNEADGKWL  449 (638)
T ss_dssp             B-CCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSS---CEEEEEETTTTSTTCCSCEE
T ss_pred             c-CCCcccEEEECCCCceEeeeeecce-EEEEeccHHHHHhcCccCCeeeecccccc---CCcccccCCCccCCCCccEE
Confidence            2 2234577899999966667778888 999998753          3455555422   2223322      4678888


Q ss_pred             EEEe
Q 017642          319 AVSS  322 (368)
Q Consensus       319 ~s~s  322 (368)
                      ++..
T Consensus       450 v~ln  453 (638)
T 3sbq_A          450 VALS  453 (638)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.87  E-value=3.7  Score=34.41  Aligned_cols=172  Identities=7%  Similarity=0.027  Sum_probs=79.5

Q ss_pred             CcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEEeC------------CcEEEEEcCCCeEEEEEeccCCCeeEEE
Q 017642          156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE------------QKIFVYNFADLKLLHQIETIANPKGLCA  221 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~d------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~  221 (368)
                      ..+.+||..+++....-.  ....-.+++.. ++.+++..            ..+.+||+.+.+-...-..........+
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            578999988776443211  11111223332 44444422            3588899877653221111111111111


Q ss_pred             EecCCCeEEEEeecCCC----CeEEEEecCcceeeee---eccCcceEEEEECCCCCEEEEEeCC-----CcEEEEEECC
Q 017642          222 VSQGVGSLVLVCPGLQK----GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTL  289 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~d----g~i~i~~~~~~~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~d-----g~~i~iwd~~  289 (368)
                      ..-+ +.++++ .|...    ..+.+++.....-..+   ......-..+.+  ++++++.|+.+     .. +.+||+.
T Consensus       118 ~~~~-~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~  192 (308)
T 1zgk_A          118 GVID-GHIYAV-GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNS-AECYYPE  192 (308)
T ss_dssp             EEET-TEEEEE-CCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCC-EEEEETT
T ss_pred             EEEC-CEEEEE-cCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCce-EEEEeCC
Confidence            1123 344433 23221    2344444443322222   111112223333  67777777754     35 8899987


Q ss_pred             CCceeEeeEecc-CcccEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 017642          290 DGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS  336 (368)
Q Consensus       290 ~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~  336 (368)
                      +.+-.. +.... ....-..+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       193 ~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          193 RNEWRM-ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             TTEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCeEee-CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            765332 11110 1111122222  67777777654     468999987764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.78  E-value=0.44  Score=38.08  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCcc--------eEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR--------IACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       215 ~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~--------i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                      ..+..++|+|++. ++ ++   .+|.++--+.....-..+.+-...        -.++.|.++|.+.++  .||. |.-+
T Consensus        41 ~~~~~laf~P~G~-LY-aV---~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~-iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LY-GV---LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDK-LYKA  112 (236)
T ss_dssp             TTCSEEEECTTSC-EE-EE---ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTE-EEEE
T ss_pred             ccceeEEECCCcc-EE-EE---eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCE-EEEe
Confidence            3667899999876 33 32   356665533222111111111122        378999999987777  5588 8777


Q ss_pred             ECCCCceeE-----eeEeccCcccEEEEEEecCCCEEEEEeCCCeEE
Q 017642          287 NTLDGTLLQ-----EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH  328 (368)
Q Consensus       287 d~~~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~  328 (368)
                      +-.+...-.     ...+...-..+..|.|.|+|.+.++.  |+.++
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            753321110     11110012468999999999987776  77643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.72  E-value=0.51  Score=40.61  Aligned_cols=113  Identities=12%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             CccEEE--eCCcEEEEEcCCCeEEEEEeccC-CCeeEEEE--ecCCCeEEEEeecCCCCeEEEEecCcce-eeeeec---
Q 017642          186 DRIIVV--LEQKIFVYNFADLKLLHQIETIA-NPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA---  256 (368)
Q Consensus       186 ~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~~~l~~~g~~dg~i~i~~~~~~~-~~~~~~---  256 (368)
                      ++.+++  .||.|+-+|.++|+.+..++... .+.....-  .+.+...+++. ...||.+..++..... ...+..   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~-p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIE-PFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEEC-CSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEE-ECCCCEEEEEECCCCcEEeeeccccc
Confidence            344444  69999999999999999886541 12111000  01122333321 2468888775544322 111111   


Q ss_pred             -cCcceEE---EEE-C----CCCCEEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          257 -HDSRIAC---FAL-T----QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       257 -~~~~i~~---v~~-s----p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                       ...++..   ..+ .    ..+..+++|+.+|. +.-.|+.+|+.+.++...
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence             1122221   001 0    13457889999999 999999999999888753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.12  E-value=4.5  Score=33.62  Aligned_cols=187  Identities=10%  Similarity=0.045  Sum_probs=89.0

Q ss_pred             CCCEEEEEe-C-----CeEEEEEecCCC---cceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           96 DHGCFAAGT-D-----HGFRIYNCDPFR---EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        96 ~g~~l~~~~-d-----~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      ++++++.|+ +     +.+.+||..+..   -.....+. ...... .+....+.++++++... .-....+.+||+.+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~~-~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGLA-GATTLGDMIYVSGGFDG-SRRHTSMERYDPNID  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBSC-EEEEETTEEEEECCBCS-SCBCCEEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccce-eEEEECCEEEEEcccCC-CcccceEEEEcCCCC
Confidence            566777776 3     238888887665   33222222 111111 22223555555554332 111257999998887


Q ss_pred             cEEEEEe--cCCceeEEEEeeCccEEEe--------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          167 RCIGELS--FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       167 ~~~~~~~--~~~~v~~~~~~~~~~~l~~--------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +....-.  ....-.++... ++++++.        -..+.+||+.+.+-...-..........+... ++.++++  |+
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~--GG  214 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVV--GG  214 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE--CC
T ss_pred             eEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEE--eC
Confidence            6443322  22222223332 5555551        24689999987654322111111111111222 3444443  33


Q ss_pred             CC-----CeEEEEecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCc
Q 017642          237 QK-----GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGT  292 (368)
Q Consensus       237 ~d-----g~i~i~~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~  292 (368)
                      .+     ..+.+++.....-..+.   ........+.+  ++++++.|+.++     . |.+||+.+.+
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  280 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSS-IECYDPIIDS  280 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEE-EEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCccccc-EEEEcCCCCe
Confidence            32     34556655543332222   11112223333  677777777653     4 7888987654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.33  E-value=5.9  Score=33.32  Aligned_cols=228  Identities=12%  Similarity=0.061  Sum_probs=100.9

Q ss_pred             EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC---CCC--CCCCcEEEEeCCCCcEEEEEe
Q 017642           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ--YPLNKVMIWDDHQSRCIGELS  173 (368)
Q Consensus        99 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---d~~--~~~~~i~vwd~~~~~~~~~~~  173 (368)
                      +++.|+ ..+.+||..+.+-.. ..+.........++....+.+++++|..   +..  .....+.+||..+++....-.
T Consensus        18 i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            344444 347888876655432 1221012222334444556666666621   100  000137888988776543211


Q ss_pred             --cCCceeEEEEeeCccEEE---eC-------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC---
Q 017642          174 --FRSEVRSVKLRRDRIIVV---LE-------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK---  238 (368)
Q Consensus       174 --~~~~v~~~~~~~~~~~l~---~d-------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d---  238 (368)
                        ....-.+++.. ++++++   .+       ..+.+||+.+.+-...-..........+...+ +.++++ .|..+   
T Consensus        96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~-GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHN-GMIYCL-GGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEET-TEEEEE-CCEESSSC
T ss_pred             CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEEC-CEEEEE-cCCCCCCC
Confidence              11122233333 444444   22       25888898776533221111111111122233 344433 23211   


Q ss_pred             --CeEEEEecCcceeeeee---ccCcceEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          239 --GQVRVEHYASKRTKFIM---AHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       239 --g~i~i~~~~~~~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                        ..+.+++.....-..+.   ........+.+  ++++++.|+.++     . +.+||+.+.+-.. +........-.+
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~-~~~~p~~r~~~~  248 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSAS-VEAFDLKTNKWEV-MTEFPQERSSIS  248 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEE-EEEEETTTCCEEE-CCCCSSCCBSCE
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccce-EEEEECCCCeEEE-CCCCCCcccceE
Confidence              23555555443322221   11111222333  667777776543     3 7789987765332 211101111112


Q ss_pred             EEEecCCCEEEEEeCC--------------CeEEEEEccCCC
Q 017642          309 LAFSSNAQWLAVSSDK--------------GTVHVFNLKVNS  336 (368)
Q Consensus       309 l~~sp~~~~l~s~s~d--------------g~i~iwd~~~~~  336 (368)
                      ++ .-++++++.|+.+              ..+.+||+++.+
T Consensus       249 ~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          249 LV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            22 2356777777643              357788887654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.00  E-value=7.5  Score=33.91  Aligned_cols=163  Identities=10%  Similarity=0.067  Sum_probs=94.0

Q ss_pred             CcEEEEeCCCC--cEEEEEec-------CCceeEEEEe---eC----ccEEE----eCCcEEEEEcCCCeEEEEEecc--
Q 017642          156 NKVMIWDDHQS--RCIGELSF-------RSEVRSVKLR---RD----RIIVV----LEQKIFVYNFADLKLLHQIETI--  213 (368)
Q Consensus       156 ~~i~vwd~~~~--~~~~~~~~-------~~~v~~~~~~---~~----~~~l~----~d~~i~vwd~~~~~~~~~~~~~--  213 (368)
                      -+|.+||+.++  +.++.+..       ...+..+++.   ++    +.++.    ....|.|+|+.+++.-+.+...  
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence            57999999999  99988863       2357788887   21    22222    3578999999998766554210  


Q ss_pred             ----------------CCCeeEEEEecC----CCeEEEEeecCCCCeEEEE---ecCc---ceeeeeeccC---cceEEE
Q 017642          214 ----------------ANPKGLCAVSQG----VGSLVLVCPGLQKGQVRVE---HYAS---KRTKFIMAHD---SRIACF  264 (368)
Q Consensus       214 ----------------~~~v~~~~~~~~----~~~~~l~~~g~~dg~i~i~---~~~~---~~~~~~~~~~---~~i~~v  264 (368)
                                      ...+..++++|+    ++.+++.. -+.....+|-   ..+.   ..++.+ +..   ..-..+
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p-lss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~  280 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA-GSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIAL  280 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE-SSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE-CCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceE
Confidence                            124566788887    56655543 2222333331   1111   111222 222   233456


Q ss_pred             EEC-CCCCEEEEEeCCCcEEEEEECCC-C---ceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          265 ALT-QDGQLLATSSTKGTLVRIFNTLD-G---TLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       265 ~~s-p~g~~l~s~~~dg~~i~iwd~~~-~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                      +++ .+|.++++--+... |..|+..+ .   +....+.....-..+..+.+..+|.+.+..
T Consensus       281 ~~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          281 AYDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            675 67777777777777 99999765 1   222333322122356777777777655554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.47  E-value=7.1  Score=32.76  Aligned_cols=68  Identities=21%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             EeCCeEEEEecCC--CCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEEe---------CCcEEEEEcCC
Q 017642          137 FRCNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---------EQKIFVYNFAD  203 (368)
Q Consensus       137 ~~~~~~~~~s~~~--d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~---------d~~i~vwd~~~  203 (368)
                      ...+.+++++|..  +..-....+.+||..+++-...-.  ....-.+++. -++++++.         -..+.+||+.+
T Consensus        96 ~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           96 EALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             EETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             EECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            3356666665521  101112579999998875433222  1212222333 34554442         13689999987


Q ss_pred             Ce
Q 017642          204 LK  205 (368)
Q Consensus       204 ~~  205 (368)
                      .+
T Consensus       175 ~~  176 (315)
T 4asc_A          175 FE  176 (315)
T ss_dssp             TE
T ss_pred             Ce
Confidence            64

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.18  E-value=7.3  Score=32.46  Aligned_cols=188  Identities=14%  Similarity=0.061  Sum_probs=88.8

Q ss_pred             CCCEEEEEe-C----CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE
Q 017642           96 DHGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG  170 (368)
Q Consensus        96 ~g~~l~~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~  170 (368)
                      ++++++.|+ +    +.+.+||..+.+-.....+. ...... .+....+.+++++|..........+.+||..+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP-TPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS-SCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC-ccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            666777776 3    34778887665443333332 112211 2223355566665533111122579999988876443


Q ss_pred             EEe--cCCceeEEEEeeCccEEEe------------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          171 ELS--FRSEVRSVKLRRDRIIVVL------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       171 ~~~--~~~~v~~~~~~~~~~~l~~------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      .-.  ....-.+++.. ++++++.            -..+.+||+.+.+-...-..........+..- ++.++++  |+
T Consensus       133 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~--GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAV--GG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE--CC
T ss_pred             CCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEE--eC
Confidence            322  22222223333 4554441            24588999987753322111111111111222 3344443  33


Q ss_pred             CC-----CeEEEEecCcceeeee---eccCcceEEEEECCCCCEEEEEeCC-----CcEEEEEECCCCc
Q 017642          237 QK-----GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT  292 (368)
Q Consensus       237 ~d-----g~i~i~~~~~~~~~~~---~~~~~~i~~v~~sp~g~~l~s~~~d-----g~~i~iwd~~~~~  292 (368)
                      .+     ..+.+++.....-..+   ........++.+  ++++++.|+.+     .. +.+||..+.+
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~  274 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDK  274 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTE
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCe
Confidence            32     2344555444332222   211222333333  67788888754     34 8889987754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.17  E-value=13  Score=35.41  Aligned_cols=196  Identities=13%  Similarity=0.074  Sum_probs=93.9

Q ss_pred             CCCCEEEEEe-C----CeEEEEEecCCCcceEE-E-----cccCCceeEEEEEEe-CCeEEEEecCCCCCCCCCcEEEEe
Q 017642           95 QDHGCFAAGT-D----HGFRIYNCDPFREIFRR-D-----FERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        95 ~~g~~l~~~~-d----~~i~iw~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~~~~~~i~vwd  162 (368)
                      -++.+++.|+ +    +.+.+||..+..-.... .     +. ............ .+.+++++|.....-.-+.+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p-~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVP-VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCC-CCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCC-ccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            5677777777 3    23788888765543332 1     11 122222223332 555555555332110124689999


Q ss_pred             CCCCcEEEEEe--cCCceeEEEEeeCccEEEeCC-----cEEEEEcCCCeEEEEEe-----ccCCCeeEEEEecCCCeEE
Q 017642          163 DHQSRCIGELS--FRSEVRSVKLRRDRIIVVLEQ-----KIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       163 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~d~-----~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~  230 (368)
                      ..+.+....-.  ....-.+++...++++++..|     .+.+||..+.+-...-.     ........+.+..+.+.++
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            88865433222  222223333323666655222     79999998765322111     1111222344554434545


Q ss_pred             EEeecCC-C-----CeEEEEecCcce------eeeeec----cCcceEEEEECCCCCEEEEEeCC--------CcEEEEE
Q 017642          231 LVCPGLQ-K-----GQVRVEHYASKR------TKFIMA----HDSRIACFALTQDGQLLATSSTK--------GTLVRIF  286 (368)
Q Consensus       231 l~~~g~~-d-----g~i~i~~~~~~~------~~~~~~----~~~~i~~v~~sp~g~~l~s~~~d--------g~~i~iw  286 (368)
                      ++ .|.. +     ..+.+++.....      -..+..    .......+. ..++++++.|+.+        .. |.+|
T Consensus       555 v~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~-v~~y  631 (695)
T 2zwa_A          555 IL-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNS-IISL  631 (695)
T ss_dssp             EE-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTS-EEEE
T ss_pred             EE-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCe-EEEE
Confidence            44 2321 2     245555544433      111211    111122233 3337777777742        45 8999


Q ss_pred             ECCCCcee
Q 017642          287 NTLDGTLL  294 (368)
Q Consensus       287 d~~~~~~~  294 (368)
                      |+.+.+-.
T Consensus       632 d~~t~~W~  639 (695)
T 2zwa_A          632 DPLSETLT  639 (695)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCeEE
Confidence            99876543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.87  E-value=7.6  Score=32.25  Aligned_cols=188  Identities=14%  Similarity=0.096  Sum_probs=87.0

Q ss_pred             CCCEEEEEe-CC-----eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEE
Q 017642           96 DHGCFAAGT-DH-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI  169 (368)
Q Consensus        96 ~g~~l~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~  169 (368)
                      ++++++.|+ ++     .+.+||..+.+-.....+. ..... ..+....+.+++++|.... ..-..+.+||+.+.+..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR-DRRST-LGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBS-CEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC-ccccc-eEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEe
Confidence            667777776 32     2777887655433322222 11111 1222335666666653320 00135888998877644


Q ss_pred             EEEe--cCCceeEEEEeeCccEEEe----------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          170 GELS--FRSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       170 ~~~~--~~~~v~~~~~~~~~~~l~~----------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      ..-.  ....-.+++.. ++++++.          -..+.+||+.+.+-...-..........+... ++.++++  |+.
T Consensus       138 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~--GG~  213 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAV--GGH  213 (302)
T ss_dssp             EECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEE--CCB
T ss_pred             ecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEE--CCC
Confidence            3322  22222233333 4444441          23588999987653322111111111111122 3344443  333


Q ss_pred             C-----CeEEEEecCcceeeeeec---cCcceEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCce
Q 017642          238 K-----GQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTL  293 (368)
Q Consensus       238 d-----g~i~i~~~~~~~~~~~~~---~~~~i~~v~~sp~g~~l~s~~~dg-----~~i~iwd~~~~~~  293 (368)
                      +     ..+.+++.....-..+..   .......+.+  ++++++.|+.++     . +.+||+.+.+-
T Consensus       214 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W  279 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLAS-VEYYNPTTDKW  279 (302)
T ss_dssp             SSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEE
T ss_pred             CCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCccccc-EEEEcCCCCeE
Confidence            3     245555554433222221   1111222333  677777777653     4 88999877653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=89.71  E-value=8.3  Score=32.41  Aligned_cols=208  Identities=7%  Similarity=-0.002  Sum_probs=111.9

Q ss_pred             EEEcCCCCEEEEEe-CC------------e--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEec--CCCCCC
Q 017642           91 ISFNQDHGCFAAGT-DH------------G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG--GPDPQY  153 (368)
Q Consensus        91 ~~~s~~g~~l~~~~-d~------------~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~d~~~  153 (368)
                      --++++|.+|.... ..            .  |+..+++..+..  . +. ...  ...+....+.++++..  ...   
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~--~-l~-~~~--~~~~s~~g~~Iy~~~~~~~~~---  128 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST--V-LD-PDP--CIYASLIGNYIYYLHYDTQTA---  128 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE--E-EE-CSC--EEEEEEETTEEEEEEESSSSC---
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce--E-ee-cCC--ccEEEEeCCEEEEEeecCCCC---
Confidence            34688999998776 32            2  555555544322  2 21 222  2255667777777661  222   


Q ss_pred             CCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--e--CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe
Q 017642          154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS  228 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (368)
                        ..|...++..... ..+. +..    ..+++++..+.  .  ...|++.++..+.....+.   +... ..+.|+++.
T Consensus       129 --~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~  197 (302)
T 3s25_A          129 --TSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTN  197 (302)
T ss_dssp             --EEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTE
T ss_pred             --ceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCE
Confidence              5677777664433 3333 322    45677777777  2  4688888887665444333   2222 346689988


Q ss_pred             EEEEeecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC--CCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~--dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                      ++..- ......|..-..++.....+...  .+  ..|+|++++|+.+..  .+. |..-++. |...+.+...    .+
T Consensus       198 iy~t~-~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~-i~~~~~D-G~~r~~l~~~----~~  266 (302)
T 3s25_A          198 VYYMD-VNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPA-LCVVKND-GTGFKELAKG----EF  266 (302)
T ss_dssp             EEEEE-GGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEEECSSSCE-EEEEETT-SCCCEEEEES----CE
T ss_pred             EEEEE-cCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcE-EEEEECC-CCccEEeeCC----cc
Confidence            66653 22224565544455444444322  23  337788888776533  344 6666764 4333444431    23


Q ss_pred             EEEEEecCCCEEEEEe-CCCeEEEEE
Q 017642          307 YSLAFSSNAQWLAVSS-DKGTVHVFN  331 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s-~dg~i~iwd  331 (368)
                      .  .+++.+.+|+-.. ..+.|..-+
T Consensus       267 ~--~i~i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          267 C--NINVTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             E--EEEECSSEEEEEETTTCCEEEEE
T ss_pred             c--eEEEeCCEEEEEECCCCeEEEEE
Confidence            3  3455677776554 345544333

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.81  E-value=13  Score=33.45  Aligned_cols=106  Identities=14%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             CeeEEEEecCCC-eEEEEeecCCCCeEEEEecCcce----eeeee---------ccCcceEEEEECCC----CCEEEEEe
Q 017642          216 PKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR----TKFIM---------AHDSRIACFALTQD----GQLLATSS  277 (368)
Q Consensus       216 ~v~~~~~~~~~~-~~~l~~~g~~dg~i~i~~~~~~~----~~~~~---------~~~~~i~~v~~sp~----g~~l~s~~  277 (368)
                      .-..++|.|++. .++++   ...|.|++.+.++..    +..+.         ........|+|+|+    +.+.++-+
T Consensus        15 ~P~~~a~~pdG~~rl~V~---er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt   91 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFIL---EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT   91 (463)
T ss_dssp             SEEEEECCSSSSCCEEEE---ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CceEEEECCCCCeEEEEE---eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence            445689999986 44443   367889886544321    11111         11356789999996    44333322


Q ss_pred             C--C----------CcEEEEEECCC----------CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          278 T--K----------GTLVRIFNTLD----------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       278 ~--d----------g~~i~iwd~~~----------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      .  +          .. |.-|.+..          .+.+..+...........|.|.|||.+.++.++.+
T Consensus        92 ~~~~~~~~~~~~~~~~-v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           92 TNQERWAIGPHDHILR-VVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             ECCCSSCSSSSCEEEE-EEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCCCcccCCcccceE-EEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1  1          13 44455532          12333333211122468899999999877766543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.49  E-value=13  Score=31.79  Aligned_cols=22  Identities=9%  Similarity=0.034  Sum_probs=15.2

Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642          139 CNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .+.+++++|...     ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~-----~~~~~~d~~~   40 (357)
T 2uvk_A           19 NDTVYIGLGSAG-----TAWYKLDTQA   40 (357)
T ss_dssp             TTEEEEECGGGT-----TCEEEEETTS
T ss_pred             CCEEEEEeCcCC-----CeEEEEcccc
Confidence            566666666543     6799999864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.87  E-value=7.7  Score=38.57  Aligned_cols=38  Identities=8%  Similarity=0.146  Sum_probs=32.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      .+.+++..++..++++.+.|++ +|||++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeec
Confidence            4677777888889999999999 9999999999887754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=85.10  E-value=15  Score=30.39  Aligned_cols=222  Identities=13%  Similarity=0.015  Sum_probs=110.0

Q ss_pred             CEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      .|..|+...... ++.. |+.|..|-.......-...   .....+..++......+++.   |     |.|+.|-....
T Consensus        25 ~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~---~~~~~i~~ia~G~~hs~~l~---~-----G~v~~wG~n~~   91 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPA---ATQSGVDAIAAGNYHSLALK---D-----GEVIAWGGNED   91 (282)
T ss_dssp             SCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCG---GGGSCCCEEEECSSEEEEEE---T-----TEEEEEECCTT
T ss_pred             CCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCc---cCCCCEEEEEeCCCEEEEEE---C-----CEEEEeeCCCC
Confidence            455555543322 2333 7778888755433221111   12234556666555555552   3     88988875432


Q ss_pred             -cEEEEEecCCceeEEEEeeCccEEEeCCcEEEEEcCC-CeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEE
Q 017642          167 -RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE  244 (368)
Q Consensus       167 -~~~~~~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~  244 (368)
                       +.-........|..++...+..+++.+|.|+.|-... +++- .-......+..++  ....+ .++.+   ||.+..|
T Consensus        92 Gqlg~P~~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~--~G~~~-~~~l~---~G~v~~w  164 (282)
T 3qhy_B           92 GQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTT-VPAEAQSGVTALD--GGVYT-ALAVK---NGGVIAW  164 (282)
T ss_dssp             STTCCCGGGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTS-CCGGGGSSEEEEE--ECSSE-EEEEE---TTEEEEE
T ss_pred             CCCCCCcccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCC-CCccCCCCeEEEE--cccCE-EEEEE---CCEEEEe
Confidence             2111111245677777776665555689999997644 2221 1111122343333  23333 23332   6888876


Q ss_pred             ecCcc-eeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC
Q 017642          245 HYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       245 ~~~~~-~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      -.... .+..-..-...|..|+.-.+. .++.  .||. |..|-......+- +... ....|..|+...+...++  . 
T Consensus       165 G~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~-v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~h~~al--~-  235 (282)
T 3qhy_B          165 GDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGK-VIAWGDNRYKQTT-VPTE-ALSGVSAIASGEWYSLAL--K-  235 (282)
T ss_dssp             ECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTE-EEEEECCTTSTTC-CCGG-GGSSCCEEEECSSCEEEE--E-
T ss_pred             cCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCe-EEEEECCCCCCCC-CCcc-cCCCceEEEcCCCEEEEE--E-
Confidence            55431 111111113457777654332 3333  5888 9999754322111 1111 123567776554333333  3 


Q ss_pred             CCeEEEEEccCCCC
Q 017642          324 KGTVHVFNLKVNSG  337 (368)
Q Consensus       324 dg~i~iwd~~~~~~  337 (368)
                      ||.|+.|-.....+
T Consensus       236 ~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          236 NGKVIAWGSSRTAP  249 (282)
T ss_dssp             TTEEEEESTTCCCC
T ss_pred             CCEEEEecCCCCcc
Confidence            89999997665444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.29  E-value=8.9  Score=38.14  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=29.0

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 017642          304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS  336 (368)
Q Consensus       304 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~  336 (368)
                      ..+.+++..++..++++-+.|+++|||++.+++
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~  268 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ  268 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence            357788888888999999999999999999875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.38  E-value=41  Score=32.01  Aligned_cols=194  Identities=7%  Similarity=0.018  Sum_probs=92.1

Q ss_pred             eCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE--------ecCCceeEEEEee-CccEEEe---------CCcEEEE
Q 017642          138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL--------SFRSEVRSVKLRR-DRIIVVL---------EQKIFVY  199 (368)
Q Consensus       138 ~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~--------~~~~~v~~~~~~~-~~~~l~~---------d~~i~vw  199 (368)
                      ..+.+++++|...  -.-..+.+||..+++....-        .....-.+++... ++.+++.         -..+.+|
T Consensus       396 ~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence            3445555554321  11256889998877644332        1112223344442 5555541         1358899


Q ss_pred             EcCCCeEEEEEeccCCCee-EEEEecCCCeEEEEeecCCCC--eEEEEecCcceeeeeec------cCcceEEEEECCC-
Q 017642          200 NFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMA------HDSRIACFALTQD-  269 (368)
Q Consensus       200 d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~g~~dg--~i~i~~~~~~~~~~~~~------~~~~i~~v~~sp~-  269 (368)
                      |..+.+-...-........ +++...++ .+++ . |+.++  .+.+++.....-..+..      ......++.+..+ 
T Consensus       474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~-~iyv-~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          474 DMKTREWSMIKSLSHTRFRHSACSLPDG-NVLI-L-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             ETTTTEEEECCCCSBCCBSCEEEECTTS-CEEE-E-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             eCCCCcEEECCCCCCCcccceEEEEcCC-EEEE-E-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            9887543221111111111 12221244 3343 3 33332  46666655433322221      1122233555544 


Q ss_pred             CCEEEEEeC--C-----CcEEEEEECCCCce-----eEeeEec-cCcccEEEEEEecCCCEEEEEeC--------CCeEE
Q 017642          270 GQLLATSST--K-----GTLVRIFNTLDGTL-----LQEVRRG-ADRAEIYSLAFSSNAQWLAVSSD--------KGTVH  328 (368)
Q Consensus       270 g~~l~s~~~--d-----g~~i~iwd~~~~~~-----~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~--------dg~i~  328 (368)
                      +++++.|+.  +     .. +.+||+.+.+.     ...+... .....-.+++...++++++.|+.        ...|.
T Consensus       551 ~~iyv~GG~~~~~~~~~~~-v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDK-AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCE-EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CEEEEECCcCCCCCeeeCc-EEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            677777765  2     34 88999987761     2222210 01111122333344777777764        24589


Q ss_pred             EEEccCCCC
Q 017642          329 VFNLKVNSG  337 (368)
Q Consensus       329 iwd~~~~~~  337 (368)
                      +||+.+.+-
T Consensus       630 ~yd~~t~~W  638 (695)
T 2zwa_A          630 SLDPLSETL  638 (695)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCeE
Confidence            999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 5/173 (2%)

Query: 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKG 218
           M+  +     I   S    VR   +        L +   V             +I+   G
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSS 277
                 G     L   G +   +++   ++      ++ HD+ +        G+ + + +
Sbjct: 208 SETKKSGKPGPFL-LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
              T +R+++  +   ++ +   A    + SL F   A ++   S   TV V+
Sbjct: 267 DDKT-LRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310
           +   ++  +        + G  L + S   T +++++   G  L  +        +  + 
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLV--GHDNWVRGVL 254

Query: 311 FSSNAQWLAVSSDKGTVHVFNLK 333
           F S  +++   +D  T+ V++ K
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYK 277

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320
           I+C A  +D   +A        V I+       +Q         ++  + ++ ++  +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 321 SSDKGTVHVFN 331
                  +V+ 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349
           I   A++ +   +A+  +   VH++    N      E +  +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ 53

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 22/242 (9%), Positives = 60/242 (24%), Gaps = 9/242 (3%)

Query: 91  ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150
                D      G +                +            +    +         D
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQI 210
               +  +      +              S    +      L+  +  ++  + + L Q 
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQH 221

Query: 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270
           +  +    L     G      +  G++   V V H        +  H+S +        G
Sbjct: 222 DFTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330
           +   ++      +  + T  G  + + +  +    + S   S + +++   S      V+
Sbjct: 278 KWFVSTGKDNL-LNAWRTPYGASIFQSKESS---SVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 331 NL 332
            +
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
           F +T DGQ+         L+           +++        + ++  S+  + +     
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHA---RQINTLNHGEVVCAVTISNPTRHVYTGGK 71

Query: 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358
            G V V+++      +        +      S   
Sbjct: 72  -GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289
           +   P      +        R    + H   +    ++   + + T       V++++  
Sbjct: 23  MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC--VKVWDIS 80

Query: 290 DGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSSDKGTVHVFN 331
                  V +         I S     +   L V  +  T+ +++
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 10/136 (7%), Positives = 32/136 (23%), Gaps = 3/136 (2%)

Query: 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM 255
             +++  +           +            +              +       T    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
                I   + ++ G+LL           +++ L       +        +  L  + + 
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA--GHDNRVSCLGVTDDG 324

Query: 316 QWLAVSSDKGTVHVFN 331
             +A  S    + ++N
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI 213
             +WD  +  C    +   S++ ++    +         +    +++    + L      
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL 272
               G+ +VS      +L+  G       V       R   +  HD+R++C  +T DG  
Sbjct: 268 NIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 273 LATSSTKGTLVRIFN 287
           +AT S     ++I+N
Sbjct: 327 VATGSWDSF-LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315
            H+S I       +G   AT S   T  R+F+      L           I S++FS + 
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 316 QWLAVSSDKGTVHVFNLK 333
           + L    D    +V++  
Sbjct: 283 RLLLAGYDDFNCNVWDAL 300

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 21/193 (10%)

Query: 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI 213
             V +WD     C+  L   +            +V   L+  I V++      +H +   
Sbjct: 157 FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216

Query: 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV----EHYASKRTKFIMAHDSRIACFALTQD 269
            +      +        ++  G     V++         +  +    H S + C    ++
Sbjct: 217 QSLTSGMELKDN-----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAEIYSLAFSSNAQWLAVSSDKGT 326
              + TSS  GT V++++   G  ++ +     G     ++ +  S+     AV S  GT
Sbjct: 272 --FVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

Query: 327 ----VHVFNLKVN 335
               + V +  V+
Sbjct: 329 EETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
           K  K +  HD  +    L   G  + + S   T +++++ + G  L+ +        ++S
Sbjct: 7   KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNT-LKVWSAVTGKCLRTLV--GHTGGVWS 62

Query: 309 LAFSSNAQW 317
                N   
Sbjct: 63  SQMRDNIII 71

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312
             +AH   +     + DG  +A++S   T ++I+N     + + +     R E   L   
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTI-PVGTRIEDQQLGII 290

Query: 313 SNAQWLAVSSDKGTVHVFNL 332
              Q L   S  G ++  N 
Sbjct: 291 WTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319
                  T  G  +   +  GT V        T  +         +      S +  + A
Sbjct: 19  TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCA 74

Query: 320 VSSDKGTVHVFN 331
                G V +++
Sbjct: 75  SGDVHGNVRIWD 86

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 23/250 (9%), Positives = 49/250 (19%), Gaps = 21/250 (8%)

Query: 86  PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV 145
                IS +                +       +       G     V        + L+
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 146 GGGPDPQ--YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD 203
               D         +   D    +    L  R+  R      D +           +   
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW-----PHQSPRH 205

Query: 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIAC 263
              +               +  +    L    L+ G+   + +A                
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLS-VDLKTGKTHTQEFAD--------LTELYFT 256

Query: 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323
              +               +  ++     L++           Y +AF      L +   
Sbjct: 257 GLRSPKDPNQIYGVLNR--LAKYDLKQRKLIKAANLDHT---YYCVAFDKKGDKLYLGGT 311

Query: 324 KGTVHVFNLK 333
              + VFN  
Sbjct: 312 FNDLAVFNPD 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 2/74 (2%)

Query: 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAEIYSLAFSSN 314
           A    I+   +     LL  +S  G+ + ++         ++ +    +  +    F  N
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 315 AQWLAVSSDKGTVH 328
                         
Sbjct: 68  TDLQIYVGTVQGEI 81

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGEESI 365
           I  +    +   L ++S  G++ V+    +  +   +   +     P    +FI   +  
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYK--FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71

Query: 366 FIF 368
              
Sbjct: 72  IYV 74

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316
               +     +   + L T+ + G  +  +N      ++   +     E   +  + +  
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFN---EDSVVKIACSDN 305

Query: 317 WLAVSSDKGTVHVFN 331
            L +++   T     
Sbjct: 306 ILCLATSDDTFKTNA 320

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292
                 G +R         KF   H +  A         +L + S       I+N   G 
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ--FNIYNLRSGK 314

Query: 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332
           L+       D  +I+S+ F       AV  D G   +  L
Sbjct: 315 LVHANILK-DADQIWSVNFKGKTLVAAVEKD-GQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 249 KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308
           +RT       S I C     +   + T +     +R++++++   L ++        +++
Sbjct: 4   QRTTLRGHMTSVITCLQF--EDNYVITGADDKM-IRVYDSINKKFLLQLS--GHDGGVWA 58

Query: 309 LAFSSNAQWLAVSS 322
           L ++     ++ S+
Sbjct: 59  LKYAHGGILVSGST 72

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 43/316 (13%), Positives = 97/316 (30%), Gaps = 37/316 (11%)

Query: 54  EPDSFSPSIPES-NPNYQMPLPSPAESTSSSPPPTLLH------ISFNQDHGCFAAGTDH 106
           +  S   ++ +  N  Y +  P+           +L H      + F+ D    A G + 
Sbjct: 24  DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83

Query: 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-----VGGGPDPQYPL------ 155
             ++Y       + R   +         +    +  +      V   PD ++        
Sbjct: 84  TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143

Query: 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIAN 215
              +   +++   +       ++ S+        +V           DL+      T++ 
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--------AHDSRIACFALT 267
             G+  V+   G    +  G     VRV    +      +         H   +     T
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263

Query: 268 QDGQLLATSSTKGTLVRIFNTLDGTLLQ----------EVRRGADRAEIYSLAFSSNAQW 317
           +DGQ + + S   + V+++N  +               EV     +  + S+A + N ++
Sbjct: 264 RDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322

Query: 318 LAVSSDKGTVHVFNLK 333
           +   S    V  ++ K
Sbjct: 323 ILSGSKDRGVLFWDKK 338

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
            + V+    +    + +     +     +       +  KG  +  ++     + +    
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVTEVK-- 314

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
                 +  L  S++ + + V  D G ++ F L+
Sbjct: 315 ----NNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328
           DG L+A  S +G    I +         V +  +   I  +    + +   +   +    
Sbjct: 14  DGDLIAFVS-RGQ-AFIQDVSGT----YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 67

Query: 329 VFNLKVNSGSARSEPRSTSDPTLPTSS 355
           +      +G A     +  +       
Sbjct: 68  LGIYDYRTGKAEKFEENLGNVFAMGVD 94

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 8e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316
           H+  I   + + DG+ L ++  +G  +  ++   G   +          I  +  +S   
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV-HATMITGIKTTSKGD 68

Query: 317 WLAVSSDKGTVHV 329
              VS D     V
Sbjct: 69  LFTVSWDDHLKVV 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
           G++ Q VR G ++A I +L+ S++ + L  +  +G ++ +++ 
Sbjct: 2   GSIDQ-VRYGHNKA-ITALSSSADGKTLFSADAEGHINSWDIS 42

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFS--SNA 315
           +     +       +A    K   VR  +  D  +   V+  G   + + ++ FS    +
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 316 QWLAVSSDKGTVHVFNLK 333
           Q+L    + G V V+   
Sbjct: 78  QYLCSGDESGKVIVWGWT 95

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 22/274 (8%), Positives = 60/274 (21%), Gaps = 29/274 (10%)

Query: 83  SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL 142
           +P   + + + N+           G  +   D      R     G  +            
Sbjct: 42  APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101

Query: 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLEQKIFVYNF 201
            +       +    +V ++D              ++  +   RD   +  L + + V + 
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

Query: 202 ADLKLLHQIETIANPKGLCAVSQG----------------------VGSLVLVCPGLQKG 239
               L+      +      A                                        
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221

Query: 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299
                       + +   D      A+         +      +  F+      ++ V  
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV---LESFDLEKNASIKRVPL 278

Query: 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333
                  YS+  S++   + +    G +  ++ +
Sbjct: 279 PH---SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 245 HYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304
            + + +   I    +         +  L+AT S     + I++      + +      + 
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA-HKD 259

Query: 305 EIYSLAFSSNAQWLAVSSDKGTVHVFN 331
            + +L + + +  ++  +D   +  +N
Sbjct: 260 GVNNLLWETPSTLVSSGAD-ACIKRWN 285

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309
           R        +      +  +G++L   +     + IF T DG L+  +      A+ + +
Sbjct: 191 RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF-TQDGQLISALESKVKHAQCFDV 249

Query: 310 AFSSNAQWLAVSSDKGTVHVF 330
           A   +   + ++S    ++++
Sbjct: 250 ALMDDGS-VVLASKDYRLYIY 269

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.54
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.43
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.35
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.16
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.75
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.7
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.62
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.61
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.51
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.33
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.31
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.13
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.11
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.88
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.82
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.35
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.14
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.08
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.97
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.79
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.47
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.59
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.18
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.89
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.44
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.18
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.4
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.32
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.26
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.01
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	81.86
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	80.31

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-36  Score=261.77  Aligned_cols=238  Identities=11%  Similarity=0.193  Sum_probs=210.7

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...|.+.|.+++|+|+|++|++|+ |+.|++||+..........+. .+...+..+.+++++..+++++.|     +.|+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~  166 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSD-----GNIA  166 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccc-cccccccccccccccccccccccc-----cccc
Confidence            457899999999999999999998 888999999876665555664 778888999999999888888887     9999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      +||+.+++...... |...|.+++|++++..++   .|+.|++||+++++.+..+. +...+.+++|+++++.+  ++ |
T Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l--~~-~  242 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWL--AV-G  242 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEE--EE-E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEccccccc--ce-e
Confidence            99999999888877 899999999999998887   58999999999999888774 77889999999999853  33 6


Q ss_pred             CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       236 ~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      +.|+.+++|+...........|...|++++|+|+|++|++++.||. |++||+.+++.+..+.   |...|.+++|+|++
T Consensus       243 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~  318 (337)
T d1gxra_         243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDD  318 (337)
T ss_dssp             ETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCCC
Confidence            6899999999888777778899999999999999999999999999 9999999999987765   66799999999999


Q ss_pred             CEEEEEeCCCeEEEEEc
Q 017642          316 QWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~  332 (368)
                      ++|++|+.||+|+|||+
T Consensus       319 ~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         319 KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEETTSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEEE
Confidence            99999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.9e-36  Score=260.03  Aligned_cols=246  Identities=13%  Similarity=0.129  Sum_probs=202.8

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|...|++++|+|+|++|++|+ |+.|+|||+..........+. .|...+.++.|++++..+++++.+   .+..
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~~~---~~~~  127 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEG---RERF  127 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECC---SSCS
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccc-cccCcccccccccccccccccccc---cccc
Confidence            34568999999999999999999999 888999999987776666665 778889999999988776665532   1167


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEEeeCccE-EE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       158 i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +++|++++++....+. |...|.+++|+|++.+ ++   .|+.|++||+++++....+..|...+.++.++|+++.  ++
T Consensus       128 ~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~--l~  205 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL--FA  205 (311)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE--EE
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccc--cc
Confidence            9999999999888887 8899999999999875 44   5899999999999999999999999999999999985  34


Q ss_pred             eecCCCCeEEEEecCcc-eeee-------eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcc
Q 017642          233 CPGLQKGQVRVEHYASK-RTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA  304 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~-~~~~-------~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~  304 (368)
                      + |+.|+.|++|+.... ....       ..+|...|++++|+|++++|++|+.||. |+|||++++++++++..+. ..
T Consensus       206 ~-~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~-~~  282 (311)
T d1nr0a1         206 S-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGT-RI  282 (311)
T ss_dssp             E-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCS-SG
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCC-Cc
Confidence            3 668999999886542 2222       2468899999999999999999999999 9999999999999887642 22


Q ss_pred             cEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       305 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      ....+.+.+++..|++++.||.|++||.+
T Consensus       283 ~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         283 EDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            22333444556789999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-35  Score=256.84  Aligned_cols=245  Identities=14%  Similarity=0.165  Sum_probs=210.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeC
Q 017642           84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      +.+.+..++++|+|+.|+.+.++.|.+|++++....  ..+. +|...+.++.|+|++.++++++.|     |.|++||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~--~~~~-~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT--EIYT-EHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCcee--EEEc-CCCCCEEEEEEeCCCCeEeccccC-----ceEeeeee
Confidence            334566789999999999999888999999876665  3454 788899999999999999999988     99999999


Q ss_pred             CCCcEE--EEEe-cCCceeEEEEeeCccEEE--e---CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeec
Q 017642          164 HQSRCI--GELS-FRSEVRSVKLRRDRIIVV--L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG  235 (368)
Q Consensus       164 ~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~--~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g  235 (368)
                      .+++..  ..+. |...|.+++|++++.+++  .   +..+++|++++++....+..|...|.+++|+|+++.++ + +|
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l-~-sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI-I-SG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE-E-EE
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee-c-cc
Confidence            887643  4455 889999999999998887  2   45699999999999889999999999999999998633 3 37


Q ss_pred             CCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEec-----cCcccEEEE
Q 017642          236 LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----ADRAEIYSL  309 (368)
Q Consensus       236 ~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l  309 (368)
                      +.|+.|++|+... +....+..|...|+++.|+|++++|++++.|+. |++||+.+++.+..+...     .|.+.|.++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            7899999988765 556667889999999999999999999999999 999999998887776532     267789999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       310 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +|+|++++|++|+.||+|+|||+++++...
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            999999999999999999999999887554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-35  Score=252.56  Aligned_cols=240  Identities=15%  Similarity=0.257  Sum_probs=203.0

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--------------------
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--------------------  138 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  138 (368)
                      ...+|.+.|++|+|+|++++|++|+ |+.|+|||+++++..  ..+. .|...+.++.++                    
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCcEEEEeeecccccccccccccccccccc
Confidence            4568999999999999999999999 888999999876654  2332 344444444444                    


Q ss_pred             ----------------------CCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---e
Q 017642          139 ----------------------CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---L  192 (368)
Q Consensus       139 ----------------------~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~  192 (368)
                                            +++..+++++.|     +.+++||+.+++.+..+. |...+.+++|++++.+++   .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  163 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN  163 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccC-----cceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC
Confidence                                  444444555544     899999999999999988 899999999999999888   5


Q ss_pred             CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCe------------------EEEEeecCCCCeEEEEecCc-ceeee
Q 017642          193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS------------------LVLVCPGLQKGQVRVEHYAS-KRTKF  253 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------~~l~~~g~~dg~i~i~~~~~-~~~~~  253 (368)
                      |+.|++|++.+++.+..+..+...+..+.+++++..                  .+++ +|+.|+.|++|+... +.+..
T Consensus       164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE-EEETTSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE-eccCCCEEEEEECCCCcEEEE
Confidence            899999999999999999999999999998876531                  1233 367899999987654 66778


Q ss_pred             eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       254 ~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +.+|...|.+++|+|++++|++|+.||. |+|||+.+++++..+..  |.+.|++++|+|++++|++|+.||+|+|||
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            8899999999999999999999999999 99999999999999988  788999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-34  Score=252.11  Aligned_cols=240  Identities=12%  Similarity=0.134  Sum_probs=200.4

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ..+..+|.+.|++|+|+|++++|++|+ |+.|+|||+.+++..  ..+. .|...+.++.|++++..+++++.|     +
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~v~~~~~~~~l~~~~~d-----~  119 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD-----N  119 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--EEEE-CSCSCEEEEEECTTSSEEEEEETT-----C
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE--EEEe-cccccEEeeEeeccceeeeeeccc-----c
Confidence            345679999999999999999999999 888999999876655  4454 678889999999999999998887     9


Q ss_pred             cEEEEeCCCCc----EEEEE-----------------------------------------e-cCCceeEEEEeeCccEE
Q 017642          157 KVMIWDDHQSR----CIGEL-----------------------------------------S-FRSEVRSVKLRRDRIIV  190 (368)
Q Consensus       157 ~i~vwd~~~~~----~~~~~-----------------------------------------~-~~~~v~~~~~~~~~~~l  190 (368)
                      .+++|+.....    ....+                                         . +...+....+.+.+.++
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence            99999865421    11111                                         1 23345666666666666


Q ss_pred             E---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCccee-ee--eeccCcceEEE
Q 017642          191 V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF--IMAHDSRIACF  264 (368)
Q Consensus       191 ~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~-~~--~~~~~~~i~~v  264 (368)
                      +   .|+.|++||+++++++..+..|...|.+++|+|+++.  +++ |+.||.|++|+...... ..  ...+...|.++
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~--l~s-~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA--FAT-GSDDATCRLFDLRADQELMTYSHDNIICGITSV  276 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE--EEE-EeCCCeEEEEeecccccccccccccccCceEEE
Confidence            6   5899999999999999999999999999999999985  443 66899999988776433 33  24567789999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       265 ~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      +|+|++++|++|+.||. |+|||+.+++.+..+.+  |.+.|++++|+|++++|++|+.||.|+|||
T Consensus       277 ~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         277 SFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999 99999999999999988  788999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=250.62  Aligned_cols=244  Identities=14%  Similarity=0.167  Sum_probs=208.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .|...|++++|+|+|++|++|+|+.|+|||+......   ..... ..|...|.+++|++++..+++++.|     +.|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~-~~h~~~I~~v~~s~dg~~l~s~~~d-----g~i~  122 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEA-----STLS  122 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeee-cCCCCcEEEEEEcCCCCEEEEeecc-----cccc
Confidence            7999999999999999999999988999999764332   22223 2677889999999999999998887     9999


Q ss_pred             EEeCCCC--cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          160 IWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       160 vwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +||+...  +....+. |...+..++|++++.+++   .|+.|++||++++++......|...+.+++|++++..++  +
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~--~  200 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW--T  200 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence            9998754  4455555 888999999999998887   588999999999999999888999999999999998533  3


Q ss_pred             ecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEec
Q 017642          234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp  313 (368)
                       |+.|+.+++|+...........|...|.+++|+|++++|++++.|+. |++||+.+++.... ..  |...|.+++|+|
T Consensus       201 -~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~-~~--~~~~i~~v~~s~  275 (337)
T d1gxra_         201 -GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQL-HL--HESCVLSLKFAY  275 (337)
T ss_dssp             -EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEE-CC--CSSCEEEEEECT
T ss_pred             -ccccccccccccccceeecccccccceEEEEEcccccccceeccccc-cccccccccccccc-cc--cccccceEEECC
Confidence             56899999998776555555568899999999999999999999999 99999998887643 33  788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          314 NAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       314 ~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      ++++|++++.||.|++||+.+++...
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~  301 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            99999999999999999999887653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-34  Score=255.94  Aligned_cols=241  Identities=15%  Similarity=0.206  Sum_probs=191.0

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEc---------------ccCCceeEEEEEEeCCeEEEEec
Q 017642           83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDF---------------ERGGGIGVVEMLFRCNILALVGG  147 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~s~  147 (368)
                      .|.+.|+||+|+|||++||+|+|+.|+|||+.+++.......               ...+...|.+++|++++..++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            699999999999999999999999999999987665422110               02456678999999999999999


Q ss_pred             CCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-----------------------------------
Q 017642          148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-----------------------------------  191 (368)
Q Consensus       148 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-----------------------------------  191 (368)
                      +.|     |.|++||...++.+..+. |...|.++.+++++..++                                   
T Consensus       140 ~~d-----g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         140 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             ccc-----cccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccC
Confidence            988     999999999988887776 777777777776654333                                   


Q ss_pred             ----------eCCcEEEEEcCCCeEEEEEe-------ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc------
Q 017642          192 ----------LEQKIFVYNFADLKLLHQIE-------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------  248 (368)
Q Consensus       192 ----------~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~------  248 (368)
                                .|+.|++||+++++....+.       .|...|.+++|+++++.  +++ |+.||.|++|+...      
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l~s-~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVS-GSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--EEE-EETTSEEEEEEC--------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE--EEE-EECCCcEEEEeccCCccccc
Confidence                      24555555555554444332       35667889999999885  343 66899999988653      


Q ss_pred             -------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEE------ecCC
Q 017642          249 -------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF------SSNA  315 (368)
Q Consensus       249 -------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~------sp~~  315 (368)
                             ........|...|.+++|+|++++|++|+.||. |+|||+.+++++..+.+  |.+.|.++++      +|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~~--H~~~V~~~~~~~~~~~spd~  368 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG--HRNSVISVAVANGSSLGPEY  368 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEECSSCTTCTTC
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEeC--CCCCEEEEEEecCcccCCCC
Confidence                   123345578899999999999999999999999 99999999999999998  7889999975      5789


Q ss_pred             CEEEEEeCCCeEEEEEccC
Q 017642          316 QWLAVSSDKGTVHVFNLKV  334 (368)
Q Consensus       316 ~~l~s~s~dg~i~iwd~~~  334 (368)
                      .+|++|+.||+|+||++++
T Consensus       369 ~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         369 NVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeeee
Confidence            9999999999999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-33  Score=250.22  Aligned_cols=240  Identities=12%  Similarity=0.075  Sum_probs=199.2

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEE
Q 017642           83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        83 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+.++|+|++|+|||++||+|+ |+.|+||+++..+......+. +|...|.++.|++++.++++++.|     +.|++|
T Consensus         5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vW   78 (371)
T d1k8kc_           5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVW   78 (371)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-CCCCCEEEEEECCCCCEEEEEECC-----CeEEEE
Confidence            3457899999999999999998 677999999877666666675 889999999999999999999888     999999


Q ss_pred             eCCCCcEEEEE--e-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE----EEEEeccCCCeeEEEEecCCCeEEE
Q 017642          162 DDHQSRCIGEL--S-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL----LHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       162 d~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      |+.+++....+  . |...|.+++|+|+++.++   .|+.|++|++.....    ......|...|.+++|+|+++.  +
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~--l  156 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--L  156 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--E
T ss_pred             eecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc--e
Confidence            99887655444  3 788999999999999887   589999999865432    2334567788999999999985  4


Q ss_pred             EeecCCCCeEEEEecCc-------------------ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc
Q 017642          232 VCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-------------------~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (368)
                      ++ |+.|+.+++|+...                   ........|...|.+++|+|+|++|++++.|+. |++||+.+++
T Consensus       157 ~s-~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~  234 (371)
T d1k8kc_         157 AA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKM  234 (371)
T ss_dssp             EE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTT
T ss_pred             ec-cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeeccc
Confidence            43 67899999987543                   223445678889999999999999999999999 9999999999


Q ss_pred             eeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      .+..+..  |..+|.+++|+||+++|++|. |+.+++|.....
T Consensus       235 ~~~~~~~--~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         235 AVATLAS--ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             EEEEEEC--SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             ceeeeec--ccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            9999987  778999999999998887664 777777776553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.4e-33  Score=237.52  Aligned_cols=243  Identities=15%  Similarity=0.151  Sum_probs=187.1

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ..+..+|.+.|++++|+|+|++|++|+ |+.|++||+++++..  ..+...|...+.++.|++++.+++++. |     +
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~h~~~v~~v~~~~~g~~~~~~~-d-----~   76 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN--RVFPDVHATMITGIKTTSKGDLFTVSW-D-----D   76 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--ECSSCSCSSCEEEEEECTTSCEEEEET-T-----T
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEcCCCCCcEEEEEeeccceeecccc-e-----e
Confidence            356789999999999999999999999 888999999876654  445446788899999999987666654 3     8


Q ss_pred             cEEEEeCCCCcE-----------------------------------------EEEEecCCceeEEEEeeCccEEE---e
Q 017642          157 KVMIWDDHQSRC-----------------------------------------IGELSFRSEVRSVKLRRDRIIVV---L  192 (368)
Q Consensus       157 ~i~vwd~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~---~  192 (368)
                      .+++|+......                                         .........+.+++|+|++.+++   .
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998643110                                         00111344677888999988877   5


Q ss_pred             CCcEEEEEcCCCeEEE-EEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-e---eeeeeccCcceEEEEEC
Q 017642          193 EQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-R---TKFIMAHDSRIACFALT  267 (368)
Q Consensus       193 d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~---~~~~~~~~~~i~~v~~s  267 (368)
                      |+.|++||+++++... ....|...+.+++|+++++.  +++ ++.|+.|++|+.... .   ...+..|...|++++|+
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF--LVA-TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE--EEE-EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccc-ccccccccccccccccccccccccccccccccccccc
Confidence            8999999998876544 33467889999999999985  343 668999999886542 2   23456799999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc-CcccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       268 p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      |++++|++|+.||. |+|||++++.....+.... +...|.++.| +++++|++++.|++|+|||+.
T Consensus       234 ~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         234 PDNVRLATGSLDNS-VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTSSEEEEEETTSC-EEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccceEEEcCCCE-EEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999 9999998876544333322 3445666655 567899999999999999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-30  Score=226.64  Aligned_cols=242  Identities=12%  Similarity=0.145  Sum_probs=187.1

Q ss_pred             cCC-CCCEEEEEEcC--CCCEEEEEe-CCeEEEEEecCCCcceE------EEcccCCceeEEEEEEeCCeEEEEe--cCC
Q 017642           82 SSP-PPTLLHISFNQ--DHGCFAAGT-DHGFRIYNCDPFREIFR------RDFERGGGIGVVEMLFRCNILALVG--GGP  149 (368)
Q Consensus        82 ~~h-~~~v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s--~~~  149 (368)
                      .+| ...|++++|+|  +|++|++|+ |+.|+|||+...+....      ..+. .+...+.++.|++++..++.  .+.
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~~  137 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGR  137 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCS
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeeccc
Confidence            345 56899999998  578999999 88899999975543322      1122 56667889999887765544  344


Q ss_pred             CCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEE-E---eCCcEEEEEcCCCeEEEEEe---ccCCCeeEEE
Q 017642          150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIE---TIANPKGLCA  221 (368)
Q Consensus       150 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~---~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~  221 (368)
                      +     +.+++|+..+++.+..+. |...|.+++|++++..+ +   .|+.|++||++.++....+.   .+...+.+++
T Consensus       138 ~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         138 D-----NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             S-----CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             c-----ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            4     789999999999999988 99999999999987643 3   48999999999887766653   4566799999


Q ss_pred             EecCCCeEEEEeecCCCCeEEEEecC-cceeeeeeccCcceEEEEEC---CCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          222 VSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       222 ~~~~~~~~~l~~~g~~dg~i~i~~~~-~~~~~~~~~~~~~i~~v~~s---p~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      |+|++..+ +++ ++.|+.|++|+.. ++.+..+.+|..++.++.|+   ++|++|++++.|+. |+|||+++++++..+
T Consensus       213 ~~pd~~~~-l~s-~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         213 FSPDSGEF-VIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKW  289 (325)
T ss_dssp             ECSTTCCE-EEE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEE
T ss_pred             ecccccee-ccc-cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEE
Confidence            99986553 333 5689999998754 46677788888777655555   68999999999999 999999999999988


Q ss_pred             EeccCcccEEEEEEecC-CCEEEEEeCCCeEEEEEc
Q 017642          298 RRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~  332 (368)
                      ..+.+...+..+++.+. +.+|++++.||+|+|||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            87545444444444432 347889999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-30  Score=224.87  Aligned_cols=243  Identities=13%  Similarity=0.172  Sum_probs=191.5

Q ss_pred             CEEEEEEcCCCCEEEEEeCCe--EEEEEecCCCcceEEEcccCC-ceeEEEEEEeC--CeEEEEecCCCCCCCCCcEEEE
Q 017642           87 TLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGG-GIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~d~~--i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~s~~~d~~~~~~~i~vw  161 (368)
                      .+++++|+|+|+.|++++.+.  |+.|+...........+. +| ...+.++.|+|  ++.++++++.|     |+|+||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs~D-----g~i~iW   92 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVW   92 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETT-----SEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEeCC-----CCEEEe
Confidence            356889999999999988555  455554443333344554 44 56788999986  66889999888     999999


Q ss_pred             eCCCCcE--------EEEEe-cCCceeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC
Q 017642          162 DDHQSRC--------IGELS-FRSEVRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG  227 (368)
Q Consensus       162 d~~~~~~--------~~~~~-~~~~v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (368)
                      |+..++.        ...+. +.+.|.+++|++++..++     .++.+++|+..+++++..+.+|...+.+++|+++++
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccccccc
Confidence            9865432        12233 788999999999998877     267899999999999999999999999999999988


Q ss_pred             eEEEEeecCCCCeEEEEecCcce-ee---eeeccCcceEEEEECCC-CCEEEEEeCCCcEEEEEECCCCceeEeeEeccC
Q 017642          228 SLVLVCPGLQKGQVRVEHYASKR-TK---FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD  302 (368)
Q Consensus       228 ~~~l~~~g~~dg~i~i~~~~~~~-~~---~~~~~~~~i~~v~~sp~-g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~  302 (368)
                      .+++  +++.|+.+++|+..... ..   ....|...|.+++|+|+ +.+|++++.||. |++||+++++.+..+..  |
T Consensus       173 ~~~~--~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~--~  247 (325)
T d1pgua1         173 MRSM--TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIED--D  247 (325)
T ss_dssp             CEEE--EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCB--T
T ss_pred             ceEE--EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccccccccccc--c
Confidence            6444  35689999998865432 22   24567888999999997 579999999999 99999999999999887  5


Q ss_pred             cccEEEEEEe---cCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          303 RAEIYSLAFS---SNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       303 ~~~v~~l~~s---p~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ...+.++.|+   +||++|++++.|+.|+|||+++++....
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~  288 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK  288 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence            5566555555   7899999999999999999998876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.5e-30  Score=226.02  Aligned_cols=246  Identities=8%  Similarity=0.009  Sum_probs=191.4

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ...+|.+.|++++|+|++++|++|+ |+.|+|||++.........+. .+...+.++.|++++..+++++.|     +.|
T Consensus        46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~s~d-----~~i  119 (371)
T d1k8kc_          46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS-----RVI  119 (371)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT-----SSE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc-cccccccccccccccccceeeccc-----Ccc
Confidence            3468999999999999999999998 888999999877665555554 677889999999999988888887     999


Q ss_pred             EEEeCCCCcEEEE----Ee-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCC------------------eEEEEEec
Q 017642          159 MIWDDHQSRCIGE----LS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL------------------KLLHQIET  212 (368)
Q Consensus       159 ~vwd~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~------------------~~~~~~~~  212 (368)
                      ++|++........    .. |...|.+++|+|++.+++   .|+.|++||+...                  +.+.....
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  199 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             eeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence            9998876543222    22 788999999999999888   5999999998542                  34556667


Q ss_pred             cCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Q 017642          213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG  291 (368)
Q Consensus       213 ~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~  291 (368)
                      |...+.+++|+|+++.  +++ ++.|+.|++|+... ..+..+..|..+|.+++|+|++++|++|. |+. +++|+....
T Consensus       200 ~~~~v~~~~~s~~g~~--l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~-~~~~~~~~~  274 (371)
T d1k8kc_         200 SCGWVHGVCFSANGSR--VAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCF-PVLFTYDSA  274 (371)
T ss_dssp             CSSCEEEEEECSSSSE--EEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSS-CEEEEEETT
T ss_pred             ccCcEEEEEeeccccc--ccc-cccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCc-eEEEEeeCC
Confidence            8888999999999985  343 56899999988654 66677888999999999999998888766 565 666554321


Q ss_pred             ceeEeeE---------------------------------------eccCcccEEEEEEecCC----CEEEEEeCCCeEE
Q 017642          292 TLLQEVR---------------------------------------RGADRAEIYSLAFSSNA----QWLAVSSDKGTVH  328 (368)
Q Consensus       292 ~~~~~~~---------------------------------------~~~~~~~v~~l~~sp~~----~~l~s~s~dg~i~  328 (368)
                      .....+.                                       ...|.+.|.++++.+.+    ..|++++.||.|+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~  354 (371)
T d1k8kc_         275 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS  354 (371)
T ss_dssp             TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred             CceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEE
Confidence            1110000                                       01267789999998755    3689999999999


Q ss_pred             EEEccCCC
Q 017642          329 VFNLKVNS  336 (368)
Q Consensus       329 iwd~~~~~  336 (368)
                      |||+++.+
T Consensus       355 iW~~~~~~  362 (371)
T d1k8kc_         355 IWDVRSLE  362 (371)
T ss_dssp             EEEHHHHH
T ss_pred             EEeCCcCh
Confidence            99997643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.7e-28  Score=209.18  Aligned_cols=236  Identities=19%  Similarity=0.352  Sum_probs=175.4

Q ss_pred             cccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        78 ~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ..+..+|.+.|.+ +++++|++|++|+ |+.|+|||+.+++..  ..+. +|...|.++.++++  .+++++.|     +
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~-~h~~~V~~v~~~~~--~l~s~s~D-----~   77 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD-----R   77 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEe-CCCCCEEEEEeCCC--ccccceec-----c
Confidence            3456799999865 4667899999999 888999999877654  5565 78889999999887  44555555     5


Q ss_pred             cEEEEeCCC----------------------------------------C------------------------------
Q 017642          157 KVMIWDDHQ----------------------------------------S------------------------------  166 (368)
Q Consensus       157 ~i~vwd~~~----------------------------------------~------------------------------  166 (368)
                      .+++|+...                                        +                              
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            555554332                                        2                              


Q ss_pred             ----------cEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          167 ----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       167 ----------~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                                +.+..+. |.  .....+.+++..++   .||.|++||++.++++..+..|...+.++.+++  +  +++
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~  231 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N--ILV  231 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--T--EEE
T ss_pred             eEEEeecccceeeEEEcCcc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--C--EEE
Confidence                      1112221 22  22334455666666   599999999999999999998888887776654  4  344


Q ss_pred             eecCCCCeEEEEecCcc-eeeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe---ccCccc
Q 017642          233 CPGLQKGQVRVEHYASK-RTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GADRAE  305 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~-~~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~---~~~~~~  305 (368)
                      + |+.|+.|++|+.... ....+.   .|...+.++.++  ++++++|+.||. |+|||+++++.++.+..   ..|.+.
T Consensus       232 s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~  307 (342)
T d2ovrb2         232 S-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGV  307 (342)
T ss_dssp             E-EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred             E-EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCE-EEEEECCCCCEEEEEecccCCCCCCC
Confidence            4 678999999987653 333443   466677777775  569999999999 99999999999988764   225678


Q ss_pred             EEEEEEecCCCEEEEEeCCCe----EEEEEccC
Q 017642          306 IYSLAFSSNAQWLAVSSDKGT----VHVFNLKV  334 (368)
Q Consensus       306 v~~l~~sp~~~~l~s~s~dg~----i~iwd~~~  334 (368)
                      |++++|+|++.+|++|+.||+    |++||++.
T Consensus       308 v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999999999999999999885    99999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.2e-28  Score=216.07  Aligned_cols=252  Identities=11%  Similarity=0.196  Sum_probs=175.8

Q ss_pred             CcccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcc-----eEEEcccCCceeEEEE------EEeC-CeEE
Q 017642           77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI-----FRRDFERGGGIGVVEM------LFRC-NILA  143 (368)
Q Consensus        77 ~~~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~~-~~~~  143 (368)
                      +.+....|...|+++++++  ++|++++ |+.|+|||....+..     .....  .+...+..+      .... +...
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeee--eccCCceEeeeEeeeccCCCCCcE
Confidence            3456789999999999864  6888888 888999997654321     11111  222222111      1111 3455


Q ss_pred             EEecCCCCCCCCCcEEEEeCCCCcE---EE--EEe------cCCceeEEEEeeCc-----cEEE---eCCcEEEEEcCCC
Q 017642          144 LVGGGPDPQYPLNKVMIWDDHQSRC---IG--ELS------FRSEVRSVKLRRDR-----IIVV---LEQKIFVYNFADL  204 (368)
Q Consensus       144 ~~s~~~d~~~~~~~i~vwd~~~~~~---~~--~~~------~~~~v~~~~~~~~~-----~~l~---~d~~i~vwd~~~~  204 (368)
                      +++++.|     |.|++|++.....   ..  ...      +...+..+++.++.     .+++   .|+.|++||+...
T Consensus        82 ~~s~~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~  156 (393)
T d1sq9a_          82 VATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  156 (393)
T ss_dssp             EEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             EEEEeCC-----CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecC
Confidence            6677777     9999998754321   11  111      34567788887753     3444   5999999998432


Q ss_pred             e---------------EEEEE---eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceee------eeeccCc
Q 017642          205 K---------------LLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTK------FIMAHDS  259 (368)
Q Consensus       205 ~---------------~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~------~~~~~~~  259 (368)
                      .               .....   ..+...+.+++|++++   ++++ |+.||.|++|+... +.+.      .+.+|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~las-gs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~  232 (393)
T d1sq9a_         157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSN  232 (393)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             CcccceeeeeeccceecccceecccCCCCcEEEEEECCCC---EEEE-EeCCCcEEEEeecccccccccccccccccccc
Confidence            1               11111   2234457889999987   4554 88999999998764 3322      3457899


Q ss_pred             ceEEEEECCCCCEEEEEeCCCc--EEEEEECCCCceeEeeEe-----------ccCcccEEEEEEecCCCEEEEEeCCCe
Q 017642          260 RIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRR-----------GADRAEIYSLAFSSNAQWLAVSSDKGT  326 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~--~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~l~~sp~~~~l~s~s~dg~  326 (368)
                      +|++++|+|+|++|++|+.|+.  .|++||+.+++.+..+..           ..|...|++|+|+||+++|++++.|++
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            9999999999999999998873  289999999988877752           127889999999999999999999999


Q ss_pred             EEEEEccCCCCCCCC
Q 017642          327 VHVFNLKVNSGSARS  341 (368)
Q Consensus       327 i~iwd~~~~~~~~~~  341 (368)
                      |+|||+++++.....
T Consensus       313 v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         313 LRFWDVKTKERITTL  327 (393)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEE
Confidence            999999998665443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-27  Score=198.05  Aligned_cols=228  Identities=15%  Similarity=0.310  Sum_probs=172.3

Q ss_pred             cccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        80 ~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|...|+|++|  ||++|++|+ |+.|+|||+++++..  ..+. +|...|.++.|+++  .+++++.|     +.|
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~v~~~~~--~l~s~s~D-----~~i   77 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQYDER--VIITGSSD-----STV   77 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEECCSS--EEEEEETT-----SCE
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEeeeecccc--eeeccccc-----ccc
Confidence            34578889999765  799999999 888999999876655  5565 78889999988654  56677777     999


Q ss_pred             EEEeCCCCcEEEEEe--------------------------------------------cCCceeEEEEeeCccEEE-eC
Q 017642          159 MIWDDHQSRCIGELS--------------------------------------------FRSEVRSVKLRRDRIIVV-LE  193 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~--------------------------------------------~~~~v~~~~~~~~~~~l~-~d  193 (368)
                      ++|++..+.......                                            |...+..+.+.++..... .|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d  157 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD  157 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence            999987754332221                                            233444444444433333 58


Q ss_pred             CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCE
Q 017642          194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL  272 (368)
Q Consensus       194 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~  272 (368)
                      +.|++||+++++.+..+.++...+..+.++  +..  +++ ++.||.|++|+... ..+....+|...+..+  ++++.+
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~  230 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRL--VVS-GSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKR  230 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTE--EEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSE
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCe--EEE-ecCCCEEEEEecccceeeeeecccceeeeec--cccceE
Confidence            999999999999999998888877766664  443  443 66899999987665 5556677788877764  557889


Q ss_pred             EEEEeCCCcEEEEEECCC---------CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEE
Q 017642          273 LATSSTKGTLVRIFNTLD---------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN  331 (368)
Q Consensus       273 l~s~~~dg~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd  331 (368)
                      |++++.||. |+|||+..         ...+..+.+  |.+.|++++|  ++++|++++.||+|+|||
T Consensus       231 l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEcCCCE-EEEEECCCCccccccCCceeeEEecC--CCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            999999999 99999753         345666766  7889999998  467899999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.6e-26  Score=198.76  Aligned_cols=214  Identities=17%  Similarity=0.214  Sum_probs=174.0

Q ss_pred             EEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcE
Q 017642          121 RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKI  196 (368)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i  196 (368)
                      .+.|. +|...|.+++|++++.++++++.|     |.|+|||+.+++.+..+. |...|.+++|+|++.+++   .|+.+
T Consensus        48 ~~tL~-GH~~~I~~l~~s~~~~~l~sgs~D-----g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          48 RRTLR-GHLAKIYAMHWGTDSRLLVSASQD-----GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             EEEEC-CCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eEEEC-CCCCCEEEEEECCCCCEEEEEECC-----CceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence            35565 899999999999999999999988     999999999999999998 899999999999999888   58999


Q ss_pred             EEEEcCCCe----EEEEEeccC-----------------------------------------CCeeEEEEecCCCeEEE
Q 017642          197 FVYNFADLK----LLHQIETIA-----------------------------------------NPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       197 ~vwd~~~~~----~~~~~~~~~-----------------------------------------~~v~~~~~~~~~~~~~l  231 (368)
                      ++|+.....    ....+..+.                                         ..+....+.+.+..  +
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  199 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL--F  199 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSE--E
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccce--e
Confidence            999975431    222222111                                         22333444444442  3


Q ss_pred             EeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEE
Q 017642          232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA  310 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~  310 (368)
                      + +|..|+.|++|+... ..+..+.+|...|++++|+|++++|++|+.||. |++||+...+.+..+....+...|.+++
T Consensus       200 ~-~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         200 V-SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             E-EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             E-EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceEEEE
Confidence            3 367899999988654 666778899999999999999999999999999 9999999998887776655677899999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      |+|++++|++|+.||.|+|||+.+++.......+
T Consensus       278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC
Confidence            9999999999999999999999988766544443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-26  Score=199.97  Aligned_cols=241  Identities=17%  Similarity=0.247  Sum_probs=182.1

Q ss_pred             cccccCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCC
Q 017642           78 ESTSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL  155 (368)
Q Consensus        78 ~~~~~~h~~~v-~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~  155 (368)
                      .....+|.+.| +|++|  ++++|++|+ |+.|+|||+.+++..  ..+. +|...|.+++|+++.. +++++.|     
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~--~~l~-~H~~~V~~l~~s~~~~-l~s~s~D-----   73 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGGI-LVSGSTD-----   73 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEE--EEEE-CCSSCEEEEEEETTTE-EEEEETT-----
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE--EEEE-CCCCCEEEEEEcCCCE-EEEEecc-----
Confidence            44567898876 56655  688999999 888999999876654  5565 7889999999998764 5666776     


Q ss_pred             CcEEEEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccC---------------
Q 017642          156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIA---------------  214 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~---------------  214 (368)
                      +.|++|+....+......   +........+.+++.+++   .|+.|++||+++...........               
T Consensus        74 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            999999999988877766   233445566778887777   58999999998765433221100               


Q ss_pred             ------CCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEE
Q 017642          215 ------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN  287 (368)
Q Consensus       215 ------~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd  287 (368)
                            .......+.++++.  ++. +..|+.+++|+... +.+.....+...+.++.|++++.++++++.|+. |++||
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~--~~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d  229 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNI--VVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWD  229 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTE--EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEE
T ss_pred             eeeeeeccccccccccccce--eee-ecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeee
Confidence                  01112344556663  333 56899999987654 556667788889999999999999999999999 99999


Q ss_pred             CCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      +.++..+..+..  |...|.+++|+  +++|++++.||.|++||+++...
T Consensus       230 ~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         230 LENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             TTTCCEEEEECC--CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccccccc--ccccccccccc--cceeeeeecccccccccccccce
Confidence            999999999887  78899999886  47999999999999999987654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.6e-26  Score=202.91  Aligned_cols=244  Identities=11%  Similarity=0.011  Sum_probs=193.3

Q ss_pred             EEEEcC-CCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE
Q 017642           90 HISFNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        90 ~~~~s~-~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      .-.||| ||+++|+++++.|++||++.+...   .+  .|...+.++.|++++..++.++.+   .+..|++||.++++.
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~---~~--~~~~~v~~~~~spDg~~l~~~~~~---~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL---KV--PEPLRIRYVRRGGDTKVAFIHGTR---EGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEE---EC--SCCSCEEEEEECSSSEEEEEEEET---TEEEEEEEETTTCCE
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEE---Ec--cCCCCEEEEEECCCCCEEEEEEcC---CCCEEEEEECCCCcE
Confidence            457999 999999999999999998754432   34  567788999999999877655432   013799999998887


Q ss_pred             EEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe-------ecCCC
Q 017642          169 IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC-------PGLQK  238 (368)
Q Consensus       169 ~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-------~g~~d  238 (368)
                      .....|...|.+++|+|++++++   .++.+++|++.+++....+..+...+..++|+|+|+.+++..       .+..+
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence            76666999999999999999988   588999999999999888888888999999999999755432       23456


Q ss_pred             CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCce-------e-----------------
Q 017642          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-------L-----------------  294 (368)
Q Consensus       239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~-------~-----------------  294 (368)
                      +.+++|+........+..|...+..++|+|||++|++++.++. +++||......       .                 
T Consensus       159 ~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP  237 (360)
T ss_dssp             EEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred             cceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccccceeeccccceEEEecccCccccceECC
Confidence            6788899888877777788888999999999999999999998 88887522100       0                 


Q ss_pred             -----------------------------EeeEe---------------------------------------ccCcccE
Q 017642          295 -----------------------------QEVRR---------------------------------------GADRAEI  306 (368)
Q Consensus       295 -----------------------------~~~~~---------------------------------------~~~~~~v  306 (368)
                                                   ..+..                                       ..+.+.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v  317 (360)
T d1k32a3         238 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNL  317 (360)
T ss_dssp             GGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEE
T ss_pred             CcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCc
Confidence                                         00000                                       0123467


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCC
Q 017642          307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE  342 (368)
Q Consensus       307 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  342 (368)
                      .+++|+|||++|++++.||.|++||+++++.+....
T Consensus       318 ~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             CEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence            889999999999999999999999999988765443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.7e-26  Score=197.97  Aligned_cols=208  Identities=14%  Similarity=0.167  Sum_probs=165.8

Q ss_pred             EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~--~d~~i~  197 (368)
                      +.+. +|...|.+++|++++..+++++.|     |.|++||+++++.+..+.  |...|.+++|+|++.+++  .|+.++
T Consensus         6 ~~~~-GH~~~V~~l~~s~dg~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~   79 (299)
T d1nr0a2           6 QVRY-GHNKAITALSSSADGKTLFSADAE-----GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK   79 (299)
T ss_dssp             EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEE
T ss_pred             eEcC-CCCCCcEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEE
Confidence            4453 999999999999999999999988     999999999999988875  888999999999998877  699999


Q ss_pred             EEEcCCCeE-------------E--------------------EEEe-------ccCCCeeEEEEecCCCeEEEEeecCC
Q 017642          198 VYNFADLKL-------------L--------------------HQIE-------TIANPKGLCAVSQGVGSLVLVCPGLQ  237 (368)
Q Consensus       198 vwd~~~~~~-------------~--------------------~~~~-------~~~~~v~~~~~~~~~~~~~l~~~g~~  237 (368)
                      +|++.....             .                    ..+.       .....+.+++|+++++.  +++ |+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~-g~~  156 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF--VAV-GGQ  156 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE--EEE-EET
T ss_pred             EeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccc-ccc
Confidence            999743210             0                    0000       11223456778888774  333 678


Q ss_pred             CCeEEEEecCcceee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe-ccCcccEEEEEEecC
Q 017642          238 KGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-GADRAEIYSLAFSSN  314 (368)
Q Consensus       238 dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~  314 (368)
                      ||.|++|+.......  ....|...|++++|+|++++|++++.|+. |++||+.++..+..... ..|...|.+++|+|+
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  235 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPD  235 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            999999887765443  34578899999999999999999999999 99999988766543321 126789999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          315 AQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +++|++|+.||.|+|||+++++...
T Consensus       236 ~~~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         236 NVRLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTCTTSCC
T ss_pred             ccceEEEcCCCEEEEEECCCCCcce
Confidence            9999999999999999998876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.5e-26  Score=197.21  Aligned_cols=227  Identities=14%  Similarity=0.199  Sum_probs=161.4

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe-------------------
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR-------------------  138 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  138 (368)
                      .+..+|...|++++|+|    |++|+ |+.|++||+.+...        .|...+.++.+.                   
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~--------~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ--------DHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC--------CCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC--------CCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            34567888888888887    77777 77788888653211        333334444444                   


Q ss_pred             ---------------CCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---e-CCcEEEE
Q 017642          139 ---------------CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---L-EQKIFVY  199 (368)
Q Consensus       139 ---------------~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~-d~~i~vw  199 (368)
                                     +++..++.+..      +.+.+|+..+++.+..+.....+.  ++++++..++   . ++.|++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          75 TKHEFGSQPKVASANNDGFTAVLTND------DDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             EEEECSSCEEEEEECSSSEEEEEETT------SEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTSCEEEE
T ss_pred             cccccccceeeeeeccCCceEEEeec------ccceeeeccceeeeeeccccceee--eeeccCcceeeeccccceeeee
Confidence                           33333333332      455566666666666666544444  4555555554   3 4579999


Q ss_pred             EcCCCeEEEEEe-ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee--eeeccCcceEEEEECCC-------
Q 017642          200 NFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQD-------  269 (368)
Q Consensus       200 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--~~~~~~~~i~~v~~sp~-------  269 (368)
                      ++...+....+. .+...+.+++|+|++..  +++ |+.||.|++|+.......  .+..|...|.+++|+|.       
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~-g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         147 KLSDLEVSFDLKTPLRAKPSYISISPSETY--IAA-GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSE--EEE-EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eccccceeeeeeeccCCceeEEEeccCccc--ccc-ccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            998776655553 46678999999999985  443 678999999988765433  46789999999999875       


Q ss_pred             ---CCEEEEEeCCCcEEEEEECCC-CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 017642          270 ---GQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL  332 (368)
Q Consensus       270 ---g~~l~s~~~dg~~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~  332 (368)
                         +.+|++|+.|+. |+|||+++ ++.+..+.+  |...|.+++|+|++ .|++++.|+.|++|++
T Consensus       224 ~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~--h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         224 EIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA--HKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTS--STTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCC--CCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence               468999999999 99999977 445555555  88899999999986 5888999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.1e-27  Score=202.30  Aligned_cols=245  Identities=11%  Similarity=0.077  Sum_probs=167.6

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCC
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN  156 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~  156 (368)
                      ++...|.+.|++|+|+|++++|++|+ |+.|+|||++.............|...|.+++|+++ ...+++++.|     +
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d-----~   79 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-----G   79 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-----S
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc-----c
Confidence            45678999999999999999999999 889999999876543222111257788999999864 5678888887     9


Q ss_pred             cEEEEeCCCCcEEEEEe-c-CCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEE----EEEecc--CCCeeEEEEecC
Q 017642          157 KVMIWDDHQSRCIGELS-F-RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL----HQIETI--ANPKGLCAVSQG  225 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~----~~~~~~--~~~v~~~~~~~~  225 (368)
                      .|++|++..+....... + ........+.++...++   .++.+++||++.+...    .....+  ........+.+.
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            99999999887777766 3 33344455556655555   5899999998543211    111111  111122233333


Q ss_pred             CCeEE--------------------------------------------EEeecCCCCeEEEEecCcce-----------
Q 017642          226 VGSLV--------------------------------------------LVCPGLQKGQVRVEHYASKR-----------  250 (368)
Q Consensus       226 ~~~~~--------------------------------------------l~~~g~~dg~i~i~~~~~~~-----------  250 (368)
                      +..++                                            +++ ++.||.+.+|......           
T Consensus       160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~~~v~~~~~~~~~~~~~~~~~~  238 (342)
T d1yfqa_         160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEe-ecCCCeEEEEEecCCcceeecccccee
Confidence            33211                                            111 3344555544332110           


Q ss_pred             -----eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          251 -----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       251 -----~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                           ......|...|++|+|+|++++|++|+.||. |+|||+.+++.+..+... |  .+..++|+|++++|++++.|+
T Consensus       239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~~~l~~~~~~-~--~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKF-N--EDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCC-S--SSEEEEEEECSSEEEEEEECT
T ss_pred             eeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCCcEEEEecCC-C--CCEEEEEEeCCCEEEEEEcCC
Confidence                 0011245567899999999999999999999 999999999998887642 3  455678899999999999898


Q ss_pred             eEEEEEcc
Q 017642          326 TVHVFNLK  333 (368)
Q Consensus       326 ~i~iwd~~  333 (368)
                      .+++|...
T Consensus       315 ~~~~~~~~  322 (342)
T d1yfqa_         315 TFKTNAAI  322 (342)
T ss_dssp             HHHHCSSS
T ss_pred             cEEEeeee
Confidence            88888653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.2e-26  Score=196.51  Aligned_cols=210  Identities=14%  Similarity=0.232  Sum_probs=179.6

Q ss_pred             EcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccE------------
Q 017642          123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII------------  189 (368)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~------------  189 (368)
                      .|. +|...|.+++|++++.++++++.|     |.|+|||+.+++.+.++. |...|.++++++++.+            
T Consensus        12 ~L~-GH~~~I~~l~~sp~~~~l~s~s~D-----g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1          12 ALS-GHRSPVTRVIFHPVFSVMVSASED-----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             EEE-CCSSCEEEEEECSSSSEEEEEESS-----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             EEc-CCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            454 899999999999999999999988     999999999999888887 7788888877776533            


Q ss_pred             ------------------------------EE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecC
Q 017642          190 ------------------------------VV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       190 ------------------------------l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                                                    ++   .|+.+++||+++++.+..+..|...+.++++++++..  +++ ++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~  162 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL--IAS-CS  162 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE--EEE-EE
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCE--EEE-Ee
Confidence                                          22   3788999999999999999999999999999999884  443 67


Q ss_pred             CCCeEEEEecCc-ceeeeeeccCcceEEEEECCC--------------------CCEEEEEeCCCcEEEEEECCCCceeE
Q 017642          237 QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDGTLLQ  295 (368)
Q Consensus       237 ~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~--------------------g~~l~s~~~dg~~i~iwd~~~~~~~~  295 (368)
                      .|+.|++|+... .....+..|...+.++.|+|+                    +.++++++.|+. |++||+.+++++.
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~  241 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLM  241 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEEE
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCcEEE
Confidence            899999977654 566678889999999999875                    347899999999 9999999999999


Q ss_pred             eeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCCCCCC
Q 017642          296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR  344 (368)
Q Consensus       296 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  344 (368)
                      .+..  |...|.+++|+|++++|++++.||.|+|||+++++.......+
T Consensus       242 ~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  288 (317)
T d1vyhc1         242 TLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  288 (317)
T ss_dssp             EEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             EEeC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence            9987  7889999999999999999999999999999988776544433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.6e-26  Score=196.81  Aligned_cols=237  Identities=17%  Similarity=0.270  Sum_probs=173.4

Q ss_pred             ccccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCc
Q 017642           79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK  157 (368)
Q Consensus        79 ~~~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~  157 (368)
                      .....|.+.|++++|++++ +|++|+ |+.|++|++............ ..........+.++...+++++.|     +.
T Consensus        47 ~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d-----~~  119 (355)
T d1nexb2          47 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRD-----NT  119 (355)
T ss_dssp             EEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEEEEEEETTEEEEEEEETT-----SE
T ss_pred             EEEECCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccc-cccccccccccccccceeeeecCC-----Cc
Confidence            3456799999999999865 677777 888999998876654433332 444445555666666666666655     55


Q ss_pred             EEEEeCC---------------------------------------------------------------CCcEEEEEe-
Q 017642          158 VMIWDDH---------------------------------------------------------------QSRCIGELS-  173 (368)
Q Consensus       158 i~vwd~~---------------------------------------------------------------~~~~~~~~~-  173 (368)
                      |++||+.                                                               +++.+..+. 
T Consensus       120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  199 (355)
T d1nexb2         120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG  199 (355)
T ss_dssp             EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeec
Confidence            5555544                                                               444444444 


Q ss_pred             cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce
Q 017642          174 FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR  250 (368)
Q Consensus       174 ~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~  250 (368)
                      +...+.++.+++++..++   .|+.|++||++++..+..+.+|...+.++++++  +  ++++ |+.||.|++|+.....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~--~l~~-~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K--FLVS-AAADGSIRGWDANDYS  274 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--S--EEEE-ECTTSEEEEEETTTCC
T ss_pred             cccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--c--eeee-eecccccccccccccc
Confidence            556677888888888777   589999999999999999999999999888864  3  3444 6789999999887543


Q ss_pred             eeeeeccCcceEEE-EECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          251 TKFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       251 ~~~~~~~~~~i~~v-~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                       ..+..|...+.++ .+++++++|++|+ ||. |+|||+++++++.....+ |...|.+++|+|+ .++++++.||+++|
T Consensus       275 -~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~-i~vwd~~tg~~~~~~~~~-~~~~V~~v~~~~~-~~~~~~s~dg~~~l  349 (355)
T d1nexb2         275 -RKFSYHHTNLSAITTFYVSDNILVSGS-ENQ-FNIYNLRSGKLVHANILK-DADQIWSVNFKGK-TLVAAVEKDGQSFL  349 (355)
T ss_dssp             -EEEEEECTTCCCCCEEEECSSEEEEEE-TTE-EEEEETTTCCBCCSCTTT-TCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred             -eecccccCCceEEEEEcCCCCEEEEEe-CCE-EEEEECCCCCEEEEEecC-CCCCEEEEEEcCC-eEEEEEECCCcEEE
Confidence             3455666666655 4567777776665 888 999999999988643322 7789999999986 57788899998776


Q ss_pred             EEc
Q 017642          330 FNL  332 (368)
Q Consensus       330 wd~  332 (368)
                      |.+
T Consensus       350 ~~~  352 (355)
T d1nexb2         350 EIL  352 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6e-25  Score=195.07  Aligned_cols=224  Identities=18%  Similarity=0.268  Sum_probs=175.5

Q ss_pred             eCCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-------
Q 017642          104 TDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-------  173 (368)
Q Consensus       104 ~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-------  173 (368)
                      .++.+.+|+.......   +...+  +|...|.+++|++++.++++|+ |     +.|+|||+.+++.+..+.       
T Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~~~--~H~~~V~~l~fs~dg~~lasg~-d-----~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          36 TNDYYILYNPALPREIDVELHKSL--DHTSVVCCVKFSNDGEYLATGC-N-----KTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             CSSCEEEECTTSCCCEEEEEEEEE--ECSSCCCEEEECTTSSEEEEEC-B-----SCEEEEETTTCCEEEEECC------
T ss_pred             CCCcEEEeCCCCCcceeeeeEeeC--CCCCcEEEEEECCCCCEEEEEe-C-----CeEEEEEecccceEeeecccccccc
Confidence            3556778875433321   22333  5888899999999999999886 5     899999999998776653       


Q ss_pred             ------------cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          174 ------------FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       174 ------------~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                                  |...|.+++|+|++.+++   .||.|++||...++.+..+.+|...+.++.+++++..++   .|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---~~~~~  184 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV---SGSGD  184 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE---EEETT
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccc---ccccc
Confidence                        455699999999999888   589999999999999999999999999999999987533   25689


Q ss_pred             CeEEEEecCcceeeeeeccCcceEEEEECC-CCCEEEEEeCCCcEEEEEECCCCceeEeeEe-----ccCcccEEEEEEe
Q 017642          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR-----GADRAEIYSLAFS  312 (368)
Q Consensus       239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~-----~~~~~~v~~l~~s  312 (368)
                      +.+++|+...........+.....++.+.+ ++++|++++.||. |++||+.++..+..+..     ..|...|.+++|+
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  263 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA-VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT  263 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSC-EEEEETTTCCEEEEEC------CCCSSCEEEEEEC
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCe-EEEeecccCccceeeccccccccCCCCCEEEEEEC
Confidence            999999888766555555555555665655 7889999999999 99999999887766542     1266789999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          313 SNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       313 p~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      |++++|++++.||.|++||+.+++...
T Consensus       264 ~~~~~l~s~~~d~~i~iwd~~~~~~~~  290 (388)
T d1erja_         264 RDGQSVVSGSLDRSVKLWNLQNANNKS  290 (388)
T ss_dssp             TTSSEEEEEETTSEEEEEEC-------
T ss_pred             CCCCEEEEEECCCcEEEEeccCCcccc
Confidence            999999999999999999998876554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=5.2e-22  Score=169.41  Aligned_cols=239  Identities=11%  Similarity=0.068  Sum_probs=184.3

Q ss_pred             CCEEEEEEcCCCCEEEE-Ee-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE-EEEecCCCCCCCCCcEEEEe
Q 017642           86 PTLLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~-~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ..+..++|+|||++|++ +. ++.|++||+.+.+..  ..+. . ......+.+++++. .++++..+     +.+.+|+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  102 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP-A-GSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE-C-SSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--eeee-c-ccccccccccccccccccccccc-----ceeeecc
Confidence            45789999999998854 44 777999999877655  3343 2 23456777877664 44455554     8999999


Q ss_pred             CCCCcEEEEEecCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCC
Q 017642          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK  238 (368)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~d  238 (368)
                      ..+++....+.+.....++.+++++..++    .++.+.+|+..+++.+..+..+ .....+.+++++..++++.  ..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~  179 (301)
T d1l0qa2         103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVAN--FDS  179 (301)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEE--TTT
T ss_pred             cccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeec--ccc
Confidence            99999999999888899999999998776    4788999999999988887644 4567789999998765543  345


Q ss_pred             CeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCC
Q 017642          239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA  315 (368)
Q Consensus       239 g~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~  315 (368)
                      +.+.++................+..++|+++++.++.++.   ++. |++||+.+++.+..+..   ...+.+++|+|||
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~va~spdg  255 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV---GPDPAGIAVTPDG  255 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC---CSSEEEEEECTTS
T ss_pred             cccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcC---CCCEEEEEEeCCC
Confidence            6777777666555554455566788999999997765543   467 99999999999888775   3468999999999


Q ss_pred             CEE-EEEeCCCeEEEEEccCCCCCCC
Q 017642          316 QWL-AVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       316 ~~l-~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++| ++++.|++|++||+++++....
T Consensus       256 ~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCeEEEE
Confidence            977 5677899999999998876543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.3e-22  Score=180.70  Aligned_cols=213  Identities=14%  Similarity=0.142  Sum_probs=148.0

Q ss_pred             CCEEEEEe-CCeEEEEEecCCCcceEE---Ecc----cCCceeEEEEEEeCC-----eEEEEecCCCCCCCCCcEEEEeC
Q 017642           97 HGCFAAGT-DHGFRIYNCDPFREIFRR---DFE----RGGGIGVVEMLFRCN-----ILALVGGGPDPQYPLNKVMIWDD  163 (368)
Q Consensus        97 g~~l~~~~-d~~i~iw~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~-----~~~~~s~~~d~~~~~~~i~vwd~  163 (368)
                      +.++++++ |+.|++|++.........   ...    ..+...+..+.+..+     ...+++++.|     +.+++|++
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~vw~~  153 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKF  153 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC-----CcEEEEEe
Confidence            34677777 888999998654332111   110    112233444444432     3556666666     99999997


Q ss_pred             CCCc---------------EEEEEe----cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEE------eccCCC
Q 017642          164 HQSR---------------CIGELS----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI------ETIANP  216 (368)
Q Consensus       164 ~~~~---------------~~~~~~----~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~------~~~~~~  216 (368)
                      ....               ......    +...+.+++|+|++.++.  .|+.|++||+++++.+..+      .+|...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~  233 (393)
T d1sq9a_         154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  233 (393)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccce
Confidence            4211               111111    455689999999985544  6999999999999877655      357889


Q ss_pred             eeEEEEecCCCeEEEEeecCCCC---eEEEEecCc-ceeee-------------eeccCcceEEEEECCCCCEEEEEeCC
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKG---QVRVEHYAS-KRTKF-------------IMAHDSRIACFALTQDGQLLATSSTK  279 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg---~i~i~~~~~-~~~~~-------------~~~~~~~i~~v~~sp~g~~l~s~~~d  279 (368)
                      |.+++|+|+++.  |++ |+.|+   .|++|+... ..+..             +.+|...|++|+|+|++++|++|+.|
T Consensus       234 V~~l~~spdg~~--l~s-gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         234 IRSVKFSPQGSL--LAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             EEEEEECSSTTE--EEE-EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEcccccccce--eee-ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence            999999999985  443 55665   588888654 23322             34799999999999999999999999


Q ss_pred             CcEEEEEECCCCceeEeeEeccCcccEE----EEEEecCCCEEEE
Q 017642          280 GTLVRIFNTLDGTLLQEVRRGADRAEIY----SLAFSSNAQWLAV  320 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~----~l~~sp~~~~l~s  320 (368)
                      +. |+|||+.+++++.++.+  |...|.    .++|++++..+++
T Consensus       311 ~~-v~vWd~~~g~~~~~l~g--H~~~v~~~~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         311 GK-LRFWDVKTKERITTLNM--HCDDIEIEEDILAVDEHGDSLAE  352 (393)
T ss_dssp             SE-EEEEETTTTEEEEEEEC--CGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             CE-EEEEECCCCCEEEEECC--cCCcccCCccEEEECCCCCEEEE
Confidence            99 99999999999999987  555543    3566666665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.3e-22  Score=181.09  Aligned_cols=247  Identities=9%  Similarity=-0.025  Sum_probs=169.2

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEE
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vw  161 (368)
                      ..+..++|||||++|++++ |+.|++||+++.+......+.  ..+...+.+..|++++..+ +++..+     +.+++|
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~-----~~v~i~  136 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFAIM  136 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC-----CeEEEE
Confidence            4689999999999999988 888999999988765444432  1334445556667777654 444444     889999


Q ss_pred             eCCCCcEEEEEe--------------------------------------------------------cCCceeEEEEee
Q 017642          162 DDHQSRCIGELS--------------------------------------------------------FRSEVRSVKLRR  185 (368)
Q Consensus       162 d~~~~~~~~~~~--------------------------------------------------------~~~~v~~~~~~~  185 (368)
                      |..+++++..+.                                                        +...+..+.++|
T Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence            988776554332                                                        122234556666


Q ss_pred             CccEEE----eCCcEEEEEcCCCeEEEEEeccC--CCeeEEEEecCCCeEEEEeecCCCCeEEEEecC--------ccee
Q 017642          186 DRIIVV----LEQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--------SKRT  251 (368)
Q Consensus       186 ~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--------~~~~  251 (368)
                      +++++.    .+..+.+++..+++.+..+....  .......+...+...+.+...+.|+.+.+|...        .+..
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~  296 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  296 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred             CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence            665554    24566677777766665554322  222334444444444444445667888775543        2556


Q ss_pred             eeeeccCcceEEEEECCCCCEEEE-------EeCCCcEEEEEECCCCceeEeeEe-------ccCcccEEEEEEecCCCE
Q 017642          252 KFIMAHDSRIACFALTQDGQLLAT-------SSTKGTLVRIFNTLDGTLLQEVRR-------GADRAEIYSLAFSSNAQW  317 (368)
Q Consensus       252 ~~~~~~~~~i~~v~~sp~g~~l~s-------~~~dg~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~  317 (368)
                      ..+.+|...+..++|+|||++|++       ++.+++ |+|||+.+++...++..       ..+...|.+++|||||++
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence            678899999999999999999994       556788 99999999987766532       124557999999999997


Q ss_pred             EEEE-----eCCCeEEEEEccCCCCC
Q 017642          318 LAVS-----SDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       318 l~s~-----s~dg~i~iwd~~~~~~~  338 (368)
                      ++..     +.++.|+|||.++.+..
T Consensus       376 i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         376 VWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             EEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             EEEEEecCCCCCCeEEEEECCCCeEE
Confidence            7432     35889999999998754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-22  Score=174.75  Aligned_cols=199  Identities=23%  Similarity=0.374  Sum_probs=143.3

Q ss_pred             EEcccCCceeEE-EEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE--eCCcEE
Q 017642          122 RDFERGGGIGVV-EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIF  197 (368)
Q Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~--~d~~i~  197 (368)
                      +.+. +|...|+ ++.++++  .+++++.|     |.|+|||+.+++++.++. |...|.+++|+++- ++.  .|+.++
T Consensus        10 ~~l~-GH~~~V~s~~~~~g~--~l~sgs~D-----g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~-l~s~s~D~~~~   80 (342)
T d2ovrb2          10 KVLK-GHDDHVITCLQFCGN--RIVSGSDD-----NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI-IISGSTDRTLK   80 (342)
T ss_dssp             EEEE-CSTTSCEEEEEEETT--EEEEEETT-----SCEEEEETTTCCEEEECCCCSSCEEEEEEETTE-EEEEETTSCEE
T ss_pred             EEEC-CcCCceEEEEEECCC--EEEEEeCC-----CeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCc-cccceeccccc
Confidence            4455 7777664 4566554  57788887     999999999999999998 99999999998752 221  355666


Q ss_pred             EEEcCCCe------------------------------------------------------------------------
Q 017642          198 VYNFADLK------------------------------------------------------------------------  205 (368)
Q Consensus       198 vwd~~~~~------------------------------------------------------------------------  205 (368)
                      +|+.....                                                                        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            65544322                                                                        


Q ss_pred             --------EEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEE
Q 017642          206 --------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATS  276 (368)
Q Consensus       206 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~  276 (368)
                              .+..+..|..  ....+.+++..  ++ +|+.||.|++|+... +.+..+..|...+.+++++  +++|+++
T Consensus       161 ~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~--l~-s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~  233 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTN--RVYSLQFDGIH--VV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSG  233 (342)
T ss_dssp             EEEGGGTEEEEEECCCSS--CEEEEEECSSE--EE-EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred             EeecccceeeEEEcCccc--ccccccCCCCE--EE-EEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEE
Confidence                    2222222222  22334455553  34 367899999988665 5667788899999988875  4699999


Q ss_pred             eCCCcEEEEEECCCCceeEeeEec-cCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCC
Q 017642          277 STKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       277 ~~dg~~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      +.||. |++||+...+....+... .|...+.++.+  +++++++++.||+|+|||+++++...
T Consensus       234 s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         234 NADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIR  294 (342)
T ss_dssp             ETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cCCCE-EEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEE
Confidence            99999 999999998888777653 24456666666  46799999999999999999987653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.2e-20  Score=165.00  Aligned_cols=201  Identities=12%  Similarity=0.057  Sum_probs=154.9

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT-DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ..|...|.+++|+|||++|++++ ++  .|++||+++++..   .+. .+...+..+.|++++..+++++.+     +.+
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~-~~~~~v~~~~~spdg~~l~~~~~~-----~~~  109 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---KFE-ENLGNVFAMGVDRNGKFAVVANDR-----FEI  109 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---ECC-CCCCSEEEEEECTTSSEEEEEETT-----SEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---Eee-CCCceEEeeeecccccccceeccc-----ccc
Confidence            36889999999999999998766 54  3999998765433   333 788889999999999999988887     999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-------------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEec
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-------------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ  224 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  224 (368)
                      ++|++.+++....+. +...+.+++|+|+|++++             .++.+++||+.+++..... .+...+..++|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~sp  188 (360)
T d1k32a3         110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDA  188 (360)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECT
T ss_pred             ccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccC
Confidence            999999999988888 888999999999999887             1346999999988765443 4566677788999


Q ss_pred             CCCeEEEEeecCCCCeEEEEec----------------------------------------------------------
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHY----------------------------------------------------------  246 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~----------------------------------------------------------  246 (368)
                      +|+.++.   ++.++.+.+|+.                                                          
T Consensus       189 dg~~l~~---~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (360)
T d1k32a3         189 DSKNLYY---LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD  265 (360)
T ss_dssp             TSCEEEE---EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC
T ss_pred             CCCEEEE---EeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCc
Confidence            8886443   223444443321                                                          


Q ss_pred             ----------------------------------------CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEE
Q 017642          247 ----------------------------------------ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF  286 (368)
Q Consensus       247 ----------------------------------------~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw  286 (368)
                                                              ..+.   ...|.+.|.+++|+|||++|++++.||. |++|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~v~~~~~SpDG~~l~~~~~Dg~-i~v~  341 (360)
T d1k32a3         266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VTEVKNNLTDLRLSADRKTVMVRKDDGK-IYTF  341 (360)
T ss_dssp             EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---EEEEEEEEEEEEECTTSCEEEEEETTSC-EEEE
T ss_pred             eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe---EEEecCCcCEEEECCCCCEEEEEECCCe-EEEE
Confidence                                                    1110   1123345788999999999999999999 9999


Q ss_pred             ECCCCceeEeeEe
Q 017642          287 NTLDGTLLQEVRR  299 (368)
Q Consensus       287 d~~~~~~~~~~~~  299 (368)
                      |+.+++...++..
T Consensus       342 d~~~~~~~~~~~~  354 (360)
T d1k32a3         342 PLEKPEDERTVET  354 (360)
T ss_dssp             ESSCTTSCEECCC
T ss_pred             ECCCCCcceEEEe
Confidence            9999888777654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.4e-21  Score=166.34  Aligned_cols=208  Identities=11%  Similarity=0.128  Sum_probs=144.1

Q ss_pred             cccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcE----EEEEecCCceeEEEEeeCc-cEEE---eCCc
Q 017642          124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC----IGELSFRSEVRSVKLRRDR-IIVV---LEQK  195 (368)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~----~~~~~~~~~v~~~~~~~~~-~~l~---~d~~  195 (368)
                      +.++|...|.+++|+|++.+|++++.|     |+|+|||+.++..    ...+.|...|.+++|++++ .+++   .|+.
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECC-----CeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            335889999999999999999999988     9999999876543    3334599999999999975 4555   5999


Q ss_pred             EEEEEcCCCeEEEEEeccCCCeeE-EEEecCCCeEEEEeecCCCCeEEEEecCcce-----eeeeecc--CcceEEEEEC
Q 017642          196 IFVYNFADLKLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAH--DSRIACFALT  267 (368)
Q Consensus       196 i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~-----~~~~~~~--~~~i~~v~~s  267 (368)
                      |++|++..+........+...... ..+.++... + + +++.++.+++|+.....     ......+  ......+.+.
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-L-I-AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTE-E-E-EEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             eeeeeccccccccccccccccccccccccccccc-c-c-ccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            999999887776666555444443 344444443 3 3 25679999998764321     1111111  2233445556


Q ss_pred             CCCCEEEEEeCCCcEEEEEECCCCceeEe---------------------------------------------------
Q 017642          268 QDGQLLATSSTKGTLVRIFNTLDGTLLQE---------------------------------------------------  296 (368)
Q Consensus       268 p~g~~l~s~~~dg~~i~iwd~~~~~~~~~---------------------------------------------------  296 (368)
                      +++..+++++.|+. |++||+...+....                                                   
T Consensus       158 ~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~  236 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             ECSSEEEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             ccCCceeeecCCCc-EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence            67777777777877 88887653321100                                                   


Q ss_pred             -eE-------eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          297 -VR-------RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       297 -~~-------~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                       +.       ...|...|.+|+|+|++++|++|+.||.|+|||+++++....
T Consensus       237 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~  288 (342)
T d1yfqa_         237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN  288 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEE
Confidence             00       011334688999999999999999999999999998876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=3.4e-20  Score=160.36  Aligned_cols=248  Identities=9%  Similarity=0.005  Sum_probs=174.5

Q ss_pred             CCCEEEEEEcCCCCEEE-EEe-CCeEEEEEecCCCcceEEEcccCC---ceeEEEEEEeCCeEEEEecCCCCC-------
Q 017642           85 PPTLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGGGPDPQ-------  152 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~d~~-------  152 (368)
                      ...+.+++|+|||++|+ ++. ++.|.+||+.+++........ ..   ......+.+++++..++.+..+..       
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC-CCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            34567899999999875 455 777999999987766443332 11   122335677777665544432100       


Q ss_pred             CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEE
Q 017642          153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ..+..+.+||..+++....+.+...+..++|+++|++++ .++.+.+||..+++....+..+... ....+.+++..+..
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN  190 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC
T ss_pred             ccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcc-ccceecCCcceeec
Confidence            012789999999999999999888899999999999887 7888999999999888877543321 11222232221110


Q ss_pred             E-----------e----------ecCCCCeEEEEecCccee--eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEEC
Q 017642          232 V-----------C----------PGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT  288 (368)
Q Consensus       232 ~-----------~----------~g~~dg~i~i~~~~~~~~--~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~  288 (368)
                      .           .          .+..++.+.+|+......  ..+..+...+..+.+++++.+++.+.  +. |++||+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~d~  267 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEEET
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--cc-EEEEEC
Confidence            0           0          012234455555443322  23445677788999999999887664  66 999999


Q ss_pred             CCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       289 ~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      .+++.+..+.   +...+.+++|+|||++|++++.|++|+|||+++.+....
T Consensus       268 ~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~  316 (337)
T d1pbyb_         268 EKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             TTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence            9999998886   355789999999999999999999999999999887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-19  Score=152.65  Aligned_cols=192  Identities=16%  Similarity=0.296  Sum_probs=144.6

Q ss_pred             CCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE---eCCcEEEEEcC
Q 017642          127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA  202 (368)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~  202 (368)
                      .+...|.++.++  +..+++++.|     |.|+|||+.+++++.++. |.+.|.+++|  ++++++   .|+.|++|++.
T Consensus        13 ~~~~~V~c~~~d--~~~l~sgs~D-----g~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          13 ETSKGVYCLQYD--DQKIVSGLRD-----NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             SSCCCEEEEECC--SSEEEEEESS-----SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             CCCCCEEEEEEc--CCEEEEEeCC-----CeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            567778888774  5567888887     999999999999999998 9999999887  455666   58999999997


Q ss_pred             CCeEEEEEec-------------------------------------------cCCCeeEEEEecCCCeEEEEeecCCCC
Q 017642          203 DLKLLHQIET-------------------------------------------IANPKGLCAVSQGVGSLVLVCPGLQKG  239 (368)
Q Consensus       203 ~~~~~~~~~~-------------------------------------------~~~~v~~~~~~~~~~~~~l~~~g~~dg  239 (368)
                      .+........                                           +...+..+.+  ....  +. +++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~--~~-~~s~d~  158 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY--IV-SASGDR  158 (293)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE--EE-EEETTS
T ss_pred             cccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccc--cc-cccCCC
Confidence            7654333221                                           1111222222  2222  22 245799


Q ss_pred             eEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE
Q 017642          240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL  318 (368)
Q Consensus       240 ~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l  318 (368)
                      .+++|+... +.+..+.++...+..+.++  +.+|++++.||. |++||+++.+.+..+..  +...+..  +++++.+|
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~~--~~~~~~~l  231 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRC--IRFDNKRI  231 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEE--EECCSSEE
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeeee--ccccceEE
Confidence            999977654 5667788888888888775  568999999999 99999999999888876  5566654  56788999


Q ss_pred             EEEeCCCeEEEEEccCCCCCC
Q 017642          319 AVSSDKGTVHVFNLKVNSGSA  339 (368)
Q Consensus       319 ~s~s~dg~i~iwd~~~~~~~~  339 (368)
                      ++++.||.|++||+.......
T Consensus       232 ~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         232 VSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             EEEETTSCEEEEEHHHHTSTT
T ss_pred             EEEcCCCEEEEEECCCCcccc
Confidence            999999999999998765543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.8e-20  Score=155.44  Aligned_cols=148  Identities=11%  Similarity=0.141  Sum_probs=114.3

Q ss_pred             EEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeE
Q 017642          132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKL  206 (368)
Q Consensus       132 ~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~  206 (368)
                      +..+..+.+.. ++++..+     +.+++|++...+....+.  +...+.+++|+|++.+++   .||.|++||+.+++.
T Consensus       123 ~~~~~~~~~~~-~v~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  196 (287)
T d1pgua2         123 GSAVSLSQNYV-AVGLEEG-----NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV  196 (287)
T ss_dssp             EEEEEECSSEE-EEEETTT-----SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             eeeeeccCcce-eeecccc-----ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc
Confidence            34444444433 3344443     689999988777666655  778899999999999887   589999999998876


Q ss_pred             EEE-EeccCCCeeEEEEecCCC--------eEEEEeecCCCCeEEEEecCc--ceeeeeeccCcceEEEEECCCCCEEEE
Q 017642          207 LHQ-IETIANPKGLCAVSQGVG--------SLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLAT  275 (368)
Q Consensus       207 ~~~-~~~~~~~v~~~~~~~~~~--------~~~l~~~g~~dg~i~i~~~~~--~~~~~~~~~~~~i~~v~~sp~g~~l~s  275 (368)
                      ... +..|...+.+++|+|.+.        ..+++ +|+.|+.|++|+...  ..+..+.+|...|++++|++++ .|++
T Consensus       197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~-sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s  274 (287)
T d1pgua2         197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVS  274 (287)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCCEEE-EEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEE
T ss_pred             ccccccccccccceeeecccccccccccCCCCeeE-eecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEE
Confidence            543 567889999999988653        22445 478999999998643  4566677899999999999986 5889


Q ss_pred             EeCCCcEEEEEEC
Q 017642          276 SSTKGTLVRIFNT  288 (368)
Q Consensus       276 ~~~dg~~i~iwd~  288 (368)
                      ++.|+. |++||+
T Consensus       275 ~g~D~~-v~iW~i  286 (287)
T d1pgua2         275 SGADAC-IKRWNV  286 (287)
T ss_dssp             EETTSC-EEEEEE
T ss_pred             EECCCe-EEEEEE
Confidence            999999 999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=2.8e-20  Score=161.58  Aligned_cols=236  Identities=9%  Similarity=-0.008  Sum_probs=159.6

Q ss_pred             EEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcE
Q 017642           91 ISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        91 ~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~  168 (368)
                      ++|++++++|++++ ++.|.|||+++.+......+  .+......+.+++++..+ +++..+     +.|++||+.+++.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc--CCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCee
Confidence            47899999999999 88899999998766544344  344556788899987654 666665     8999999999998


Q ss_pred             EEEEecC-------CceeEEEEeeCccEEE---------------eCCcEEEEEcCCCeEEEEEecc--CCCee------
Q 017642          169 IGELSFR-------SEVRSVKLRRDRIIVV---------------LEQKIFVYNFADLKLLHQIETI--ANPKG------  218 (368)
Q Consensus       169 ~~~~~~~-------~~v~~~~~~~~~~~l~---------------~d~~i~vwd~~~~~~~~~~~~~--~~~v~------  218 (368)
                      +..+...       ..+..++|+|||++++               .++.+.+||..+++....+..+  ...+.      
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            8877622       2456788999987665               1566778877665432221110  01111      


Q ss_pred             --------------------------------EEEEecCCCeEEEEeecCCCCe-------------------------E
Q 017642          219 --------------------------------LCAVSQGVGSLVLVCPGLQKGQ-------------------------V  241 (368)
Q Consensus       219 --------------------------------~~~~~~~~~~~~l~~~g~~dg~-------------------------i  241 (368)
                                                      .+.+++++..++..  +..++.                         +
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH--QSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             TSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC--CCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             CCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEE--ecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence                                            11222333221111  111222                         2


Q ss_pred             EEEecCcce--eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEE
Q 017642          242 RVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA  319 (368)
Q Consensus       242 ~i~~~~~~~--~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~  319 (368)
                      .+|+.....  ......|...+..+.+++++.+++.... +. |++||+.+++.+..+..   ...+.+++|+|||++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~  307 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NR-LAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLY  307 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SE-EEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEE
T ss_pred             EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-Ce-EEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEE
Confidence            333332222  2223456777888999998887777665 46 99999999999888764   34689999999999999


Q ss_pred             EEeCCCeEEEEEccCCCCCCC
Q 017642          320 VSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       320 s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      +++.|+.|+|||+++.+....
T Consensus       308 v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         308 LGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             EESBSSEEEEEETTTTEEEEE
T ss_pred             EEeCCCcEEEEECccCCEEEE
Confidence            999999999999999876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=3e-19  Score=160.44  Aligned_cols=230  Identities=13%  Similarity=0.074  Sum_probs=156.0

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEE--EEe--
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--ELS--  173 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~--~~~--  173 (368)
                      ++++.. |+.|+|||+.+++..  ..+. .+ ..+..++|+|++..+++++.|     +.|++||+.+++...  ++.  
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~--~~l~-~g-~~~~~vafSPDGk~l~~~~~d-----~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIV--KVID-TG-YAVHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEE--EEEE-CC-SSEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEE--EEEe-CC-CCeeEEEECCCCCEEEEEeCC-----CCEEEEEccCCceeEEEEEeCC
Confidence            445566 777999999987766  4453 33 357889999999999888887     999999999887544  333  


Q ss_pred             --cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee---------cCCC
Q 017642          174 --FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP---------GLQK  238 (368)
Q Consensus       174 --~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---------g~~d  238 (368)
                        |...+.+++|+|||++++    .++.+.+||..+++++..+..+...+....+.+++....++.+         ....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence              334455666778998875    5899999999999988887766555544445554443333221         1122


Q ss_pred             CeEEEEecCc-ce-eeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeE---------------------
Q 017642          239 GQVRVEHYAS-KR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ---------------------  295 (368)
Q Consensus       239 g~i~i~~~~~-~~-~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~---------------------  295 (368)
                      +.+.++.... .. ......+...+..+.|+|++++++++..+...+.+|+..+++.+.                     
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            3333322211 11 122335667788999999999888776554437777765543322                     


Q ss_pred             ---------------------------------eeEeccCcccEEEEEEecCCCEEEE-------EeCCCeEEEEEccCC
Q 017642          296 ---------------------------------EVRRGADRAEIYSLAFSSNAQWLAV-------SSDKGTVHVFNLKVN  335 (368)
Q Consensus       296 ---------------------------------~~~~~~~~~~v~~l~~sp~~~~l~s-------~s~dg~i~iwd~~~~  335 (368)
                                                       .+.+  |...+..++|+||+++|++       ++.|++|+|||++++
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                                             2333  4566888999999999994       456889999999988


Q ss_pred             CCCC
Q 017642          336 SGSA  339 (368)
Q Consensus       336 ~~~~  339 (368)
                      +...
T Consensus       343 ~~~~  346 (426)
T d1hzua2         343 DAKY  346 (426)
T ss_dssp             TSCC
T ss_pred             CcCe
Confidence            7653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.83  E-value=1.1e-17  Score=142.01  Aligned_cols=219  Identities=14%  Similarity=0.110  Sum_probs=167.0

Q ss_pred             CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEE
Q 017642          105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL  183 (368)
Q Consensus       105 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~  183 (368)
                      ++.|.|||+++++..  ..+.  .......+++++++..+ +++..+     +.|++||+.+++.+..+.....+..+++
T Consensus        11 ~~~v~v~D~~t~~~~--~~i~--~g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~~~~~~~~~~~~~   81 (301)
T d1l0qa2          11 SDNISVIDVTSNKVT--ATIP--VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGSSPQGVAV   81 (301)
T ss_dssp             TTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             CCEEEEEECCCCeEE--EEEE--CCCCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceeeeeecccccccccc
Confidence            778999999887655  3443  22345678899987654 555555     8999999999999999986667899999


Q ss_pred             eeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeeeccCc
Q 017642          184 RRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS  259 (368)
Q Consensus       184 ~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~~~~~  259 (368)
                      ++++..++    .++.+.+|+..+++....+..+ .....+.++++++.+++.  +..++.+.+|+...........+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAVINTVSVGR  158 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             ccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeee--eccccceeeeeccccceeeecccCC
Confidence            99998766    4779999999999988888654 456779999999975543  5568888887766554444444455


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEe---CCCeEEEEEccCCC
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNS  336 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~dg~i~iwd~~~~~  336 (368)
                      .+..++++++++++++++.+...+.+|+....+....+..   ...+..++|+++++.++.++   .++.|++||+.+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~  235 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeeeeeeecCCCe
Confidence            6789999999998888877654378888777777666653   45678899999999877654   34689999998876


Q ss_pred             CC
Q 017642          337 GS  338 (368)
Q Consensus       337 ~~  338 (368)
                      ..
T Consensus       236 ~~  237 (301)
T d1l0qa2         236 IT  237 (301)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.2e-18  Score=154.83  Aligned_cols=243  Identities=9%  Similarity=-0.025  Sum_probs=161.6

Q ss_pred             CCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc--cCCceeEEEEEEeCCeEE-EEecCCCCCCCCCcEEEE
Q 017642           86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVMIW  161 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~s~~~d~~~~~~~i~vw  161 (368)
                      ..+..++|||||++|++++ |+.+++||+.+.+......+.  ..+...+.+..|++++.. ++++..+     +.|++|
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~-----~~v~i~  136 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIM  136 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC-----CeEEEE
Confidence            3699999999999999988 888999999887765444443  123344445556777765 4666665     999999


Q ss_pred             eCCCCcEEEEEe------------cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEe-ccCCCeeEEEEec
Q 017642          162 DDHQSRCIGELS------------FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQ  224 (368)
Q Consensus       162 d~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~  224 (368)
                      |..+++.+..+.            +......+.+++++..++    .++.|.+||..+++...... ........++|+|
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp  216 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG  216 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence            999999887764            334566788999987765    47899999998876544332 2344567899999


Q ss_pred             CCCeEEEEeecCCCCeEEEEecCcceee--------------------------------------e-------eeccCc
Q 017642          225 GVGSLVLVCPGLQKGQVRVEHYASKRTK--------------------------------------F-------IMAHDS  259 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i~i~~~~~~~~~--------------------------------------~-------~~~~~~  259 (368)
                      +|+.++++.  ..++.+.+++.......                                      .       ...|..
T Consensus       217 dg~~~~va~--~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~  294 (432)
T d1qksa2         217 SHRYFITAA--NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  294 (432)
T ss_dssp             TSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCEEEEec--cccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccccc
Confidence            999766554  34455655443321100                                      0       001222


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc------------------------eeE--------eeEeccCcccEE
Q 017642          260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------------------------LLQ--------EVRRGADRAEIY  307 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~------------------------~~~--------~~~~~~~~~~v~  307 (368)
                      .+....+++++..+++++.+.. .++|+.....                        .++        .+..  |...|.
T Consensus       295 ~v~~~~~~~~g~~~~~~s~p~~-~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~--~~~~v~  371 (432)
T d1qksa2         295 KILDSFPALGGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE--GQPRVV  371 (432)
T ss_dssp             SEEEEEECSCSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS--SCCEEE
T ss_pred             EEEEEEEcCCCCeEEEEecCCc-cceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCC--CCCcEE
Confidence            4555666666666666666666 6666543210                        000        1111  455788


Q ss_pred             EEEEecCCCEEEEEe-----CCCeEEEEEccCCCCC
Q 017642          308 SLAFSSNAQWLAVSS-----DKGTVHVFNLKVNSGS  338 (368)
Q Consensus       308 ~l~~sp~~~~l~s~s-----~dg~i~iwd~~~~~~~  338 (368)
                      +++|+|||++++.+.     .+|.|+|||.++.+..
T Consensus       372 ~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~  407 (432)
T d1qksa2         372 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK  407 (432)
T ss_dssp             EEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             EeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence            999999999886553     4688999999998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.9e-17  Score=140.81  Aligned_cols=246  Identities=11%  Similarity=0.072  Sum_probs=162.8

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ..|.+.|..|+|+|||++|+++.  |+.|++|+++....................+++++++..++.++.+    ++.|.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----~~~v~  108 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVS  108 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC----CCcee
Confidence            35778899999999999996655  7789999998765543322111233345568899988766665432    27899


Q ss_pred             EEeCCCCcEEEEEe---cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE------eccCCCeeEEEEecCC
Q 017642          160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI------ETIANPKGLCAVSQGV  226 (368)
Q Consensus       160 vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~  226 (368)
                      +|+...........   +...+.++.++++++.++    .+..|.+|+..........      .........++|++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            99877765544433   677889999999998877    3678999998664322111      1223345678999999


Q ss_pred             CeEEEEeecCCCCeEEEEecCcc--ee---eeee------ccCcceEEEEECCCCCEEEEE-eCCCcEEEEEECCCCcee
Q 017642          227 GSLVLVCPGLQKGQVRVEHYASK--RT---KFIM------AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLL  294 (368)
Q Consensus       227 ~~~~l~~~g~~dg~i~i~~~~~~--~~---~~~~------~~~~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~~~~  294 (368)
                      ...++.  ....+...++.....  ..   ..+.      ........+++++++++++.. ..++. +.+|++......
T Consensus       189 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~-~~~~~~~~~~~~  265 (333)
T d1ri6a_         189 QYAYCV--NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSV  265 (333)
T ss_dssp             SEEEEE--ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCC
T ss_pred             eeEEee--ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe-EEEEEEcCCCCE
Confidence            875544  344566666543321  11   1111      123456778999999966655 44566 999998765443


Q ss_pred             EeeEec-cCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccC
Q 017642          295 QEVRRG-ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (368)
Q Consensus       295 ~~~~~~-~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~  334 (368)
                      ..+... .....+.+++|+|||++|++++ .++.|++|+++.
T Consensus       266 ~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         266 LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            333321 1334678899999999987765 568999997754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=4e-17  Score=146.50  Aligned_cols=188  Identities=12%  Similarity=0.052  Sum_probs=135.3

Q ss_pred             EEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCc--EEEEEe--
Q 017642           99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS--  173 (368)
Q Consensus        99 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~--  173 (368)
                      ++++.+ ++.|.|||.++++...  .+. .+ ..+..+.|+|++..+++++.|     +.|++||+.+++  .+.++.  
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~--~~~-~g-~~~~~v~fSpDG~~l~~~s~d-----g~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKT--VLD-TG-YAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEE--EEE-CS-SCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEE--EEe-CC-CCeeEEEECCCCCEEEEEcCC-----CCEEEEEeeCCCceEEEEEecC
Confidence            345666 6779999998887764  453 33 357899999999999988887     999999998876  344444  


Q ss_pred             --cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccC-----------CCeeEEEEecCCCeEEEEeecC
Q 017642          174 --FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA-----------NPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       174 --~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                        +.+.+.+..|+|||++++    .++.|++||..+++.+..+..+.           .....+.+++++..++++  ..
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs--~~  182 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN--VK  182 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE--ET
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE--Ec
Confidence              334445556678998764    58999999999999888775433           234457788888875544  45


Q ss_pred             CCCeEEEEecCc-ceeeeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          237 QKGQVRVEHYAS-KRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       237 ~dg~i~i~~~~~-~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      .++.|.+++... +...... .+...+..++|+|+|+++++++.++..+.++|..+++.+..+
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            688888876554 3333222 345678899999999988888776654999998776655443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=2.9e-16  Score=137.72  Aligned_cols=248  Identities=8%  Similarity=-0.031  Sum_probs=159.7

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC--
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--  152 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~--  152 (368)
                      ...+..++.+++++|||+.+++..      ...|.+||.++++...  .+. .+...  .+.|++++..++....+..  
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~--~~~-~~~~~--~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG--HVN-GGFLP--NPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE--EEe-CCCCc--cEEEcCCCCEEEEEeecCCcc
Confidence            346778899999999999987653      2348888877766553  343 33322  5778888877665543211  


Q ss_pred             ---CCCCcEEEEeCCCCcEEEEEe-cCCc-------eeEEEEeeCccEEE-----eCCcEEEEEcCCCeEEEEEeccCCC
Q 017642          153 ---YPLNKVMIWDDHQSRCIGELS-FRSE-------VRSVKLRRDRIIVV-----LEQKIFVYNFADLKLLHQIETIANP  216 (368)
Q Consensus       153 ---~~~~~i~vwd~~~~~~~~~~~-~~~~-------v~~~~~~~~~~~l~-----~d~~i~vwd~~~~~~~~~~~~~~~~  216 (368)
                         ..++.|.+||..+++.+..+. +...       ...+.|+++++.+.     .++.+.+|+....+......    .
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~  166 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----S  166 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----c
Confidence               123789999999999888776 3322       24567778777554     25677788877665544332    2


Q ss_pred             eeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee--------------------------------------------
Q 017642          217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--------------------------------------------  252 (368)
Q Consensus       217 v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~--------------------------------------------  252 (368)
                      ..++.++++++..+++  .+.|+.+.+|+.......                                            
T Consensus       167 ~~~~~~s~~g~~~~v~--~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         167 PTCYHIHPGAPSTFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             ceeEEEecCCCcEEEE--EcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCC
Confidence            3456677777664443  345666666543221100                                            


Q ss_pred             ------eeecc----------CcceEEEEECCCCCEEE----------EEeCCCcEEEEEECCCCceeEeeEeccCcccE
Q 017642          253 ------FIMAH----------DSRIACFALTQDGQLLA----------TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI  306 (368)
Q Consensus       253 ------~~~~~----------~~~i~~v~~sp~g~~l~----------s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v  306 (368)
                            .+..+          ......+++++++..++          ....++. |.+||+.+++.+..+.   +...+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~~~~~~---~~~~~  320 (373)
T d2madh_         245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQTSSQIS---LGHDV  320 (373)
T ss_pred             eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEEECCCCcEEEEec---CCCCe
Confidence                  00000          01122345566665443          3445566 8999999999988776   35578


Q ss_pred             EEEEEecCCCE--EEEEeCCCeEEEEEccCCCCCCCCCC
Q 017642          307 YSLAFSSNAQW--LAVSSDKGTVHVFNLKVNSGSARSEP  343 (368)
Q Consensus       307 ~~l~~sp~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~  343 (368)
                      .+++|+|||+.  +++++.|++|+|||+.+++.......
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC
Confidence            99999999984  46788999999999999988765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=3.2e-15  Score=129.94  Aligned_cols=237  Identities=14%  Similarity=0.021  Sum_probs=150.6

Q ss_pred             EEEEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccCCc----eeEEEEEEeCCeE--EEEecCCC
Q 017642           88 LLHISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGGG----IGVVEMLFRCNIL--ALVGGGPD  150 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~s~~~d  150 (368)
                      +..++|+|||++|++.+           ++.|++||+.+++..........+.    .....+.|++++.  +++....+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            34689999999887643           4569999998877654433211111    1122356666654  44444444


Q ss_pred             CCCCCCcEEEEeCCCCcEEEEEecCCc--------eeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCee
Q 017642          151 PQYPLNKVMIWDDHQSRCIGELSFRSE--------VRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKG  218 (368)
Q Consensus       151 ~~~~~~~i~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~  218 (368)
                           ..+.+|+..+++.+..+.....        ...+.+++|+..+.    .++.+.+++......     .+...+.
T Consensus       129 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~  198 (355)
T d2bbkh_         129 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLIN  198 (355)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCS
T ss_pred             -----ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceee
Confidence                 7899999999998888763332        22344555554443    233444444333221     1223344


Q ss_pred             EEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee---cc----------CcceEEEEECCCCCEEEEEeCC------
Q 017642          219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AH----------DSRIACFALTQDGQLLATSSTK------  279 (368)
Q Consensus       219 ~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~---~~----------~~~i~~v~~sp~g~~l~s~~~d------  279 (368)
                      ...+..++..++.   .+.++.+++|+.....+..+.   .+          ......+++++++..++....+      
T Consensus       199 ~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         199 HPAYSQKAGRLVW---PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             CCEEETTTTEEEE---EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eccccCCCCeEEE---ecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            5667777765433   346889999877664433221   11          1223458899999977765443      


Q ss_pred             ----CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC--EEEEEeCCCeEEEEEccCCCCCCCC
Q 017642          280 ----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       280 ----g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                          .. |.+||..+++.+..+..   ...+.+++|+|||+  ++++++.|+.|+|||+++++.....
T Consensus       276 ~~~~~~-v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         276 KTASRF-VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             TSCEEE-EEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCe-EEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence                25 99999999999888875   34688999999998  4556678999999999999876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.5e-15  Score=130.60  Aligned_cols=227  Identities=9%  Similarity=0.017  Sum_probs=153.5

Q ss_pred             CEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcEEEEEe-c
Q 017642           98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELS-F  174 (368)
Q Consensus        98 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~  174 (368)
                      ++|++++ |+.|+|||+++.+......+. .+...+..+++++++..+ +++..+     +.|.+||+.+++.+..+. +
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~-~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT-TCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC-CCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecC
Confidence            4788888 889999999987766444432 344556788999987654 566665     899999999999998886 2


Q ss_pred             -----CCceeEEEEeeCccEEE---------------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          175 -----RSEVRSVKLRRDRIIVV---------------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       175 -----~~~v~~~~~~~~~~~l~---------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                           ...+..++|+|+++.++               .+..+.+||..+++....+..+ ..+..++++++++.++++  
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--  152 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEE--
Confidence                 23456889999998776               1568999999999988888644 456789999999975542  


Q ss_pred             cCCCCeEEEEecCc-ceeeeeeccCcc-----------------------eEEEEECCCCCEEEEEeCCCcEEEEEECCC
Q 017642          235 GLQKGQVRVEHYAS-KRTKFIMAHDSR-----------------------IACFALTQDGQLLATSSTKGTLVRIFNTLD  290 (368)
Q Consensus       235 g~~dg~i~i~~~~~-~~~~~~~~~~~~-----------------------i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~  290 (368)
                       +  +.+.+|+... +....+..+...                       +.......+...+..+..++. +.+||+.+
T Consensus       153 -~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  228 (337)
T d1pbyb_         153 -G--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLET  228 (337)
T ss_dssp             -S--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETTT
T ss_pred             -c--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-EEEEEcCC
Confidence             2  3455655443 333322221110                       000111111122222333456 89999998


Q ss_pred             CceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       291 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ++........ +...+..+.+++++.+++.+  ++.|++||+.+++....
T Consensus       229 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~  275 (337)
T d1pbyb_         229 GEMAMREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR  275 (337)
T ss_dssp             CCEEEEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             CcEEEEEecC-CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEE
Confidence            8866543332 56678899999999998765  58899999998876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=3.4e-14  Score=122.45  Aligned_cols=211  Identities=10%  Similarity=0.001  Sum_probs=134.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCC---ceeEEEEEEeCCeEEEEec-----------
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGG---GIGVVEMLFRCNILALVGG-----------  147 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~-----------  147 (368)
                      |...+.+++|+|||++|+++.  ++.|++||+.+++...........   ......+.+++++..++..           
T Consensus        38 ~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~  117 (346)
T d1jmxb_          38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  117 (346)
T ss_dssp             SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeee
Confidence            445678999999999875554  667999999876554332221000   0011123333332211111           


Q ss_pred             -----------------------------------CCCCC--CCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEE
Q 017642          148 -----------------------------------GPDPQ--YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV  190 (368)
Q Consensus       148 -----------------------------------~~d~~--~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l  190 (368)
                                                         +.+..  ..++.+.+|++.+++.+..+........+.++|++..+
T Consensus       118 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (346)
T d1jmxb_         118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  197 (346)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             ccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEE
Confidence                                               11100  01145677888888888777644444445555544322


Q ss_pred             E-----------------------------eCCcEEEEEcCCCeEEEE-EeccCCCeeEEEEecCCCeEEEEeecCCCCe
Q 017642          191 V-----------------------------LEQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQ  240 (368)
Q Consensus       191 ~-----------------------------~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~  240 (368)
                      .                             .++.+.+||+.++..... +..+...+..+.+++++..++..    .++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  273 (346)
T d1jmxb_         198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG----VLNR  273 (346)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE----EESE
T ss_pred             EEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe----cCCe
Confidence            1                             244688889887765443 34566677788888888764432    2467


Q ss_pred             EEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       241 i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                      +.+|+...........+...+.+++|+|||++|++++.|+. |+|||+++++.+.++..
T Consensus       274 v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~-v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         274 LAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECccCCEEEEEEC
Confidence            88988766544443345567999999999999999999999 99999999999988885

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=8.9e-13  Score=115.07  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             CCCeEEEEecCcceeeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecC
Q 017642          237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      .++.+.+|+...........+...+..++|+|||+  ++++++.|+. |+|||+.+++.+..+..  +......|++.++
T Consensus       296 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg~~~~~~~~--~g~~P~~l~~~~~  372 (373)
T d2madh_         296 AAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVE--LGSGPQVLSVMNE  372 (373)
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEECC--CCCCCcEEEEecC
Confidence            45566675544433333334667789999999998  4567889999 99999999999999986  4445667766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=7.9e-13  Score=113.27  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=151.4

Q ss_pred             EEEe-CCeEEEEEecCCCc-ceEEEcccCCceeEEEEEEeCCeEEE-EecCCCCCCCCCcEEEEeCCCCcEEE----EEe
Q 017642          101 AAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIG----ELS  173 (368)
Q Consensus       101 ~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~d~~~~~~~i~vwd~~~~~~~~----~~~  173 (368)
                      +++. ++.|++|+++.... ...+.+  .+...+..++|+|++..| +++..|     +.|++|++.......    ...
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~--~~~~~v~~la~spDG~~L~v~~~~d-----~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEE
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEE--cCCCCEeEEEEeCCCCEEEEEECCC-----CeEEEEEEeCCCCcEEEeeecc
Confidence            4444 88899999986544 333444  456677889999998766 555555     999999987654322    223


Q ss_pred             cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEE--eccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          174 FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       174 ~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      ....+..++|+|||++++    .++.|.+|+..........  ..+...+..+.++++++.++..  ...+..+.+|+..
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~--~~~~~~i~~~~~~  158 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVP--ALKQDRICLFTVS  158 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEE--EGGGTEEEEEEEC
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecc--ccccceeeEEEec
Confidence            566788999999999887    3678999998766544333  3455567788999999975544  3456677776544


Q ss_pred             cceee-------eeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCce----eEeeEe----ccCcccEEEEEE
Q 017642          248 SKRTK-------FIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL----LQEVRR----GADRAEIYSLAF  311 (368)
Q Consensus       248 ~~~~~-------~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~----~~~~~~----~~~~~~v~~l~~  311 (368)
                      .....       ...........++|++++.+++.... .+. ..+|+......    ...+..    .........+++
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         159 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc-eEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            32111       11223455688999999997776654 445 88888654321    112211    112345678899


Q ss_pred             ecCCCEEEEE-eCCCeEEEEEccCCCCC
Q 017642          312 SSNAQWLAVS-SDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       312 sp~~~~l~s~-s~dg~i~iwd~~~~~~~  338 (368)
                      ++|+++++.. ..++.+.+|++......
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~  265 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSV  265 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCE
Confidence            9999977655 56789999999765543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=5.6e-13  Score=116.50  Aligned_cols=249  Identities=4%  Similarity=-0.109  Sum_probs=145.7

Q ss_pred             CCCCEEEEEEcCCCCEE--EEEe--CCe--EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC--CC---C
Q 017642           84 PPPTLLHISFNQDHGCF--AAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP--DP---Q  152 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l--~~~~--d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--d~---~  152 (368)
                      +.+....++..++++..  +...  ++.  +.+||.++++..  ..+. .+...  .+.+++++..++..+.  ..   .
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~--~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTL--GHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEE--EEEe-CCCCC--cceECCCCCEEEEEcccCcccccc
Confidence            33444445567788753  3222  344  555565555443  3333 23333  3567776654443210  00   0


Q ss_pred             CCCCcEEEEeCCCCcEEEEEe-cC-------CceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCC----
Q 017642          153 YPLNKVMIWDDHQSRCIGELS-FR-------SEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANP----  216 (368)
Q Consensus       153 ~~~~~i~vwd~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~----  216 (368)
                      ..++.|++||..+++.+..+. +.       .....++|+|||++++    .++.+.+||+.+++.+..+..+...    
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  172 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP  172 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc
Confidence            012789999999999998876 22       2245689999999886    3789999999999988877544322    


Q ss_pred             ---eeEEEEecCCCeEEEEeec---------------------------------CCCCeEEEEecCcceeeee---ec-
Q 017642          217 ---KGLCAVSQGVGSLVLVCPG---------------------------------LQKGQVRVEHYASKRTKFI---MA-  256 (368)
Q Consensus       217 ---v~~~~~~~~~~~~~l~~~g---------------------------------~~dg~i~i~~~~~~~~~~~---~~-  256 (368)
                         ...+.+++|+...++....                                 ...+.+++.+........+   .. 
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSS
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccc
Confidence               1224445555433322100                                 0011112211111111100   00 


Q ss_pred             ---------cCcceEEEEECCCCCEEEEEeCC---------CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-E
Q 017642          257 ---------HDSRIACFALTQDGQLLATSSTK---------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-W  317 (368)
Q Consensus       257 ---------~~~~i~~v~~sp~g~~l~s~~~d---------g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~  317 (368)
                               .......+++++++..++....+         .. |.+||..+++.+..+..   ...+.+++|+|||+ +
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQTSGPISN---GHDSDAIIAAQDGASD  328 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCEEECCEE---EEEECEEEECCSSSCE
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce-EEEEECCCCcEeEEecC---CCceeEEEECCCCCEE
Confidence                     00112347788888866554322         24 88999999999888874   34688999999997 3


Q ss_pred             -EEEEeCCCeEEEEEccCCCCCCCC
Q 017642          318 -LAVSSDKGTVHVFNLKVNSGSARS  341 (368)
Q Consensus       318 -l~s~s~dg~i~iwd~~~~~~~~~~  341 (368)
                       ++++..|+.|+|||..+++.....
T Consensus       329 ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             EEEEeCCCCeEEEEECCCCCEEEEE
Confidence             456678899999999998876443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.43  E-value=2.2e-12  Score=113.11  Aligned_cols=238  Identities=10%  Similarity=0.002  Sum_probs=157.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE--EEEecCCCCC-C---
Q 017642           82 SSPPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQ-Y---  153 (368)
Q Consensus        82 ~~h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~d~~-~---  153 (368)
                      ..|...+....++|||++|.+..  ++.|.++|+++++......+  ........+.+++++.  +++..+.+.. +   
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i--P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI--PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec--CCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            45666777777889999998776  66699999998877654444  3455667777776544  5544433200 0   


Q ss_pred             --------CCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e-------------------------------
Q 017642          154 --------PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L-------------------------------  192 (368)
Q Consensus       154 --------~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~-------------------------------  192 (368)
                              ....+..+|..+.+....+...+....+.++|+|++++  .                               
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                    00234668988888888888777889999999998776  1                               


Q ss_pred             -----------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcce---------ee
Q 017642          193 -----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------TK  252 (368)
Q Consensus       193 -----------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~---------~~  252 (368)
                                 ++.+.+++....+.+..+.....+ ..+.++|||+++++  +|..+++|.+|+...-.         ..
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~--~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFIA--NGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEEE--ECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCc-cCceECCCCCEEEE--eCCcCCcEEEEEeehhhhHhhccCCcce
Confidence                       123444444444556666655544 45899999997443  58899999998865311         01


Q ss_pred             eeecc---CcceEEEEECCCCCEEEEEeCCCcEEEEEECCC----------CceeEeeEec---cCcccEEEEEEecCCC
Q 017642          253 FIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEVRRG---ADRAEIYSLAFSSNAQ  316 (368)
Q Consensus       253 ~~~~~---~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~----------~~~~~~~~~~---~~~~~v~~l~~sp~~~  316 (368)
                      .+.++   .-.....+|+++|..+.+...|.. |..|++..          ...+..+..+   .|...+.+.+++|||+
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~-v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQ-VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             EEEeecccccCcccceecCCceEEEcccccce-EEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            11111   112345689999988889999999 99999742          1233333221   0555566678999999


Q ss_pred             EEEEE---eCCC
Q 017642          317 WLAVS---SDKG  325 (368)
Q Consensus       317 ~l~s~---s~dg  325 (368)
                      +|+++   +.|+
T Consensus       382 ~l~s~~k~s~dr  393 (441)
T d1qnia2         382 WLVVLSKFSKDR  393 (441)
T ss_dssp             EEEEEESCCGGG
T ss_pred             EEEecCcccccc
Confidence            99999   5554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=2.3e-09  Score=89.31  Aligned_cols=235  Identities=13%  Similarity=0.207  Sum_probs=156.7

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcc-----cCCceeEEEEEEe--CCeEEEEecCCCCCCCCCcE
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ....|+++++|+++++-. .+.|++||.+ ++..  ..+.     ......-..+.+.  ....+++....+     +.|
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~i   95 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----HQI   95 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----CEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEE--EEecccCCCcccccccccccccccccccceeccCCc-----ccc
Confidence            457899999999777755 6669999854 2222  2221     0111122333333  233444444433     678


Q ss_pred             EEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEE
Q 017642          159 MIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l  231 (368)
                      .+++ ..++....+.  .......+++.+++.+++   ..+.+.+++. +++.+..+..  +......+++.++++ ++ 
T Consensus        96 ~~~~-~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~-  171 (279)
T d1q7fa_          96 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-IF-  171 (279)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-EE-
T ss_pred             cccc-ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecccee-EE-
Confidence            8888 4677777765  456678899999988777   2456888874 5666666632  334456677777764 33 


Q ss_pred             EeecCCCCeEEEEecCcceeeeee--ccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEE
Q 017642          232 VCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYS  308 (368)
Q Consensus       232 ~~~g~~dg~i~i~~~~~~~~~~~~--~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~  308 (368)
                      ++ ....+.|++++.+++.+..+.  +.......|+++++|+++++-.. ++. |.+|+ .+|+.+..+...........
T Consensus       172 v~-d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~-~~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         172 IS-DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             EE-EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEE
T ss_pred             ee-eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcE-EEEEC-CCCCEEEEEeCCCCCCCEeE
Confidence            33 456788999888888776663  34456789999999997776544 456 99998 57888877765433446889


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       309 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      |++.+||.+++ ++.++.|++|+.....+
T Consensus       249 vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         249 VALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             EEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            99999997655 55789999999987644

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.35  E-value=2.7e-11  Score=105.58  Aligned_cols=204  Identities=9%  Similarity=-0.033  Sum_probs=123.8

Q ss_pred             EEEEcCCCCEEEEEe-----------CCeEEEEEecCCCcceEEEcccC----CceeEEEEEEeCCeEEEEec-CCCCCC
Q 017642           90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGG-GPDPQY  153 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~-~~d~~~  153 (368)
                      .++|+|||+.|++.+           ++.|++||..+.+......+...    .......+.|++++..++.+ ..+   
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~---  145 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS---  145 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS---
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC---
Confidence            579999999888754           45599999988776544333201    01112246788887655443 333   


Q ss_pred             CCCcEEEEeCCCCcEEEEEec-CC-------ceeEEEEeeCc--------------------------------------
Q 017642          154 PLNKVMIWDDHQSRCIGELSF-RS-------EVRSVKLRRDR--------------------------------------  187 (368)
Q Consensus       154 ~~~~i~vwd~~~~~~~~~~~~-~~-------~v~~~~~~~~~--------------------------------------  187 (368)
                        +.+.+||+.+++.+..+.. ..       ....+.+++|+                                      
T Consensus       146 --~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (368)
T d1mdah_         146 --SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             --SCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             --CeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc
Confidence              8999999999988777652 11       11122233333                                      


Q ss_pred             cEEE-eCCcEEEEEcCCCeEEEEEe--cc----------CCCeeEEEEecCCCeEEEEeecCC------CCeEEEEecCc
Q 017642          188 IIVV-LEQKIFVYNFADLKLLHQIE--TI----------ANPKGLCAVSQGVGSLVLVCPGLQ------KGQVRVEHYAS  248 (368)
Q Consensus       188 ~~l~-~d~~i~vwd~~~~~~~~~~~--~~----------~~~v~~~~~~~~~~~~~l~~~g~~------dg~i~i~~~~~  248 (368)
                      ..+. .++.++++++..++......  ..          ......++++++++.++++.....      ...|.+|+...
T Consensus       224 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t  303 (368)
T d1mdah_         224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             EEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             EEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence            3332 34455555554443222111  00          011234788888888766542211      13466766554


Q ss_pred             -ceeeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEEEECCCCceeEeeEec
Q 017642          249 -KRTKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGTLLQEVRRG  300 (368)
Q Consensus       249 -~~~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~iwd~~~~~~~~~~~~~  300 (368)
                       +.+..+. +...+..++|+|||+  +++++..++. |+|||..+++.+..+..+
T Consensus       304 ~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         304 GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCC
T ss_pred             CcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEEECC
Confidence             4444443 445688999999997  3466777888 999999999999998864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=3.1e-11  Score=108.75  Aligned_cols=141  Identities=12%  Similarity=0.011  Sum_probs=97.0

Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEEecCCCcceEE---EcccCCceeEEEEEEeCCeEEEEecCCCC-CC---CCCcEEEEe
Q 017642           90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDP-QY---PLNKVMIWD  162 (368)
Q Consensus        90 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-~~---~~~~i~vwd  162 (368)
                      .+.|.++++++.. .++.+.+||+.+++.....   .+. .+...+.++.|+|++..++...... .|   .++.+.+||
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTT-TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhh-hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679999987653 4777999999887765321   122 3445678899999988776543210 00   126789999


Q ss_pred             CCCCcEEEEEecCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEecc------------------CCCeeEEEE
Q 017642          163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI------------------ANPKGLCAV  222 (368)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~  222 (368)
                      +.+++......+...+..+.|+|||+.++  .++.+++|+..+++..+.....                  .+....+.|
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            99887544333888899999999999988  7899999999888655433211                  122345778


Q ss_pred             ecCCCeEEEE
Q 017642          223 SQGVGSLVLV  232 (368)
Q Consensus       223 ~~~~~~~~l~  232 (368)
                      +|||+.++.+
T Consensus       179 SPDGk~ia~~  188 (470)
T d2bgra1         179 SPNGTFLAYA  188 (470)
T ss_dssp             CTTSSEEEEE
T ss_pred             CCCCCcccee
Confidence            8888865443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=2e-10  Score=98.93  Aligned_cols=211  Identities=10%  Similarity=-0.022  Sum_probs=123.7

Q ss_pred             EEEEEEcCCCCEEEEEe---CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      ...++|+++|++++++.   +..+.+|+..+.+...  .+. ... ..............++..       +...++...
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~~~~~~~~~~~~~~d-------g~~~~v~~~  176 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR--MLD-VPD-CYHIFPTAPDTFFMHCRD-------GSLAKVAFG  176 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE--EEE-CCS-EEEEEEEETTEEEEEETT-------SCEEEEECC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEee--EEe-cCC-cceEeecCCcceEEEcCC-------CCEEEEEec
Confidence            34578999999887765   4458999987765543  232 111 111222222232222221       444444333


Q ss_pred             CCcEEEEEe-------cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEE--EEecc----------CCCeeEEEE
Q 017642          165 QSRCIGELS-------FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH--QIETI----------ANPKGLCAV  222 (368)
Q Consensus       165 ~~~~~~~~~-------~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~--~~~~~----------~~~v~~~~~  222 (368)
                      .......+.       +...+....+.+++..++   .++.+++|++..++...  ....+          ......+++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  256 (355)
T d2bbkh_         177 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY  256 (355)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred             CCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence            322222111       333455566777665555   58899999998765321  11111          122345889


Q ss_pred             ecCCCeEEEEeecC-------CCCeEEEEecCc-ceeeeeeccCcceEEEEECCCCC--EEEEEeCCCcEEEEEECCCCc
Q 017642          223 SQGVGSLVLVCPGL-------QKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ--LLATSSTKGTLVRIFNTLDGT  292 (368)
Q Consensus       223 ~~~~~~~~l~~~g~-------~dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~--~l~s~~~dg~~i~iwd~~~~~  292 (368)
                      ++++..+++.....       ....|.+|+... +.+..+. +...+.+++|+|||+  ++++++.|+. |+|||+++++
T Consensus       257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~-i~v~D~~tg~  334 (355)
T d2bbkh_         257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGE  334 (355)
T ss_dssp             ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTE-EEEEETTTCC
T ss_pred             eCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCE-EEEEECCCCC
Confidence            99998876654221       124677777654 4444444 345688999999998  4566777899 9999999999


Q ss_pred             eeEeeEeccCcccEEEEEEec
Q 017642          293 LLQEVRRGADRAEIYSLAFSS  313 (368)
Q Consensus       293 ~~~~~~~~~~~~~v~~l~~sp  313 (368)
                      .+.++..  +......+.+..
T Consensus       335 ~~~~i~~--~G~~p~~i~~~d  353 (355)
T d2bbkh_         335 ELRSVNQ--LGHGPQVITTAD  353 (355)
T ss_dssp             EEEEECC--CCSSCCEEECCC
T ss_pred             EEEEEeC--cCCCccEEEeCC
Confidence            9998875  333344454443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.31  E-value=4.7e-10  Score=97.36  Aligned_cols=243  Identities=10%  Similarity=0.070  Sum_probs=139.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeE--EEEecCCCCCCCCCcEEEEe
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLNKVMIWD  162 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~d~~~~~~~i~vwd  162 (368)
                      ...+..|+|++++++|.+...+.+..|.++........... ........+.+++++.  +++.....    .+.|..+.
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~p~~v~~~~~~~~~~v~~a~~~----~~~v~~~~  113 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASH-PIGGHPRANDADTNTRAIFLLAAKQP----PYAVYANP  113 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEE-ECCSSGGGGCTTSCCEEEEEEECSST----TCCEEEEE
T ss_pred             CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeee-cCCCCcEEEEECCCCCEEEEEEecCC----CCEEEEeE
Confidence            33456799999999998888778888888754333221110 1111112233333333  33333211    14444433


Q ss_pred             C------------CC-CcE---EEEE--ecCCceeEEEEeeCccEEE----eCCcEEEEEcCC-CeEE--EEEe--ccCC
Q 017642          163 D------------HQ-SRC---IGEL--SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD-LKLL--HQIE--TIAN  215 (368)
Q Consensus       163 ~------------~~-~~~---~~~~--~~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~-~~~~--~~~~--~~~~  215 (368)
                      +            .. ++.   ....  +....+.++.|+|||++++    ....|.+|+... ++..  ..+.  ....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            2            11 111   1111  1334678999999999877    245788888743 3322  1221  1234


Q ss_pred             CeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee---eee-----------------ccCcceEEEEECCCCCEEEE
Q 017642          216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIM-----------------AHDSRIACFALTQDGQLLAT  275 (368)
Q Consensus       216 ~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~---~~~-----------------~~~~~i~~v~~sp~g~~l~s  275 (368)
                      ....++|+|+++.++++  ...+++|.+++.+.....   ...                 .+......+.++|||++|++
T Consensus       194 gPr~i~f~pdg~~~yv~--~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYAL--MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             CEEEEEECTTSSEEEEE--ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             ceEEEEECCCCceEEEe--ccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            56779999999987665  456888988766543211   110                 11223567899999999887


Q ss_pred             EeC------CCcEEEEEECCCCceeEee---Ee-ccCcccEEEEEEec-CCCEEEEEe-CCCeEEEEEccCC
Q 017642          276 SST------KGTLVRIFNTLDGTLLQEV---RR-GADRAEIYSLAFSS-NAQWLAVSS-DKGTVHVFNLKVN  335 (368)
Q Consensus       276 ~~~------dg~~i~iwd~~~~~~~~~~---~~-~~~~~~v~~l~~sp-~~~~l~s~s-~dg~i~iwd~~~~  335 (368)
                      +..      .+. |..|++.....+...   .. ........+++++| +|++|+++. .++.|.+|+++..
T Consensus       272 snr~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         272 SSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            743      234 666776543222211   11 11223457799998 899887775 6789999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=8.4e-10  Score=96.53  Aligned_cols=189  Identities=10%  Similarity=0.003  Sum_probs=125.9

Q ss_pred             EeCCeEEEE-ecCCCCCCCCCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCcc--EEE--eCC---------------
Q 017642          137 FRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRI--IVV--LEQ---------------  194 (368)
Q Consensus       137 ~~~~~~~~~-s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~--~l~--~d~---------------  194 (368)
                      ..+++.+++ ....+     +.|.++|+.++++...+.  ....+..++|+|+++  +++  .+.               
T Consensus        79 gtpDGr~lfV~d~~~-----~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~  153 (441)
T d1qnia2          79 GRYDGKYLFINDKAN-----TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN  153 (441)
T ss_dssp             TEEEEEEEEEEETTT-----TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred             ccCCCCEEEEEcCCC-----CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence            455666554 33333     899999999999888766  678899999999988  444  222               


Q ss_pred             ---cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCC----------------------------------
Q 017642          195 ---KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ----------------------------------  237 (368)
Q Consensus       195 ---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~----------------------------------  237 (368)
                         .+..+|..+.+....+.... ....+.++|+|++.++.+-++.                                  
T Consensus       154 ~~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         154 SYTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             EEEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             ccceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence               24568888888877776443 4567999999998776553221                                  


Q ss_pred             ----CCeEEEEecCc-ceeeeeeccCcceEEEEECCCCCEEE-EEeCCCcEEEEEECCCCcee--------EeeEecc-C
Q 017642          238 ----KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLL--------QEVRRGA-D  302 (368)
Q Consensus       238 ----dg~i~i~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~l~-s~~~dg~~i~iwd~~~~~~~--------~~~~~~~-~  302 (368)
                          ++.+.++.... +.+..+..... ...+.++|||++++ ++..+++ |.|||+.+.+..        ..+.... .
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~~~~~~~~  310 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDTIVAEPEL  310 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGGEEECCBC
T ss_pred             EeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCcceEEEeeccc
Confidence                22333332222 23334444433 46799999999765 5667888 999998753211        1111100 1


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 017642          303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       303 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~  333 (368)
                      .-.....+|.++|..+.+...|..|..|++.
T Consensus       311 glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         311 GLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccCcccceecCCceEEEcccccceEEEeccc
Confidence            1134567899999988888999999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=2.3e-11  Score=109.67  Aligned_cols=153  Identities=13%  Similarity=0.043  Sum_probs=116.3

Q ss_pred             eEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEec-----cCCCeeEEEEecCCCeEEEEeec------CCCCeEEEEec
Q 017642          179 RSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPG------LQKGQVRVEHY  246 (368)
Q Consensus       179 ~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~g------~~dg~i~i~~~  246 (368)
                      ..+.|.+++.++. .++.|.+||+.+++....+..     +...+..+.|+||++.++++...      +.++.+.+|+.
T Consensus        20 ~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             cCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            4577999998888 788999999999987765543     34568899999999986665411      33577888999


Q ss_pred             CcceeeeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc----------------CcccEEEEE
Q 017642          247 ASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA----------------DRAEIYSLA  310 (368)
Q Consensus       247 ~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~l~  310 (368)
                      ..+....+..|...+..+.|||||++||... ++. +.+|+..+++..+....+.                ..+....+.
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCcccccccCCccccccccccCcceeeEee-ccc-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9888888999999999999999999999865 456 9999999887665433210                112345678


Q ss_pred             EecCCCEEEEEeCCCe-EEEEEcc
Q 017642          311 FSSNAQWLAVSSDKGT-VHVFNLK  333 (368)
Q Consensus       311 ~sp~~~~l~s~s~dg~-i~iwd~~  333 (368)
                      |||||+.|+....|.+ +..|.+.
T Consensus       178 wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         178 WSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             ECCCCCccceeEecCCcCceEEEE
Confidence            9999999998875533 6666554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=7.7e-09  Score=85.07  Aligned_cols=231  Identities=8%  Similarity=-0.039  Sum_probs=140.0

Q ss_pred             CEEEEEEcCCCCEEEEEe-C-CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           87 TLLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      .-..|++.++|.+.++.. . +.+..++....... ...+  ........+++++++.++++....     +.+++++..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~--~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~~~   86 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPF--NGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAAGS   86 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCC--CSCCSCCCEEECTTCCEEEEETTT-----EEEEECTTC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-Eecc--CCccCceEEEEcCCCCEEEeeeee-----ceeeeeeec
Confidence            457899999999776655 3 34665554332211 1111  222233456777777777766554     667776655


Q ss_pred             CCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeE
Q 017642          165 QSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV  241 (368)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i  241 (368)
                      ++..+..........++++.+++.+++   .+..+..++...................+++.++++ ++++.  ..++.|
T Consensus        87 ~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~--~~~~~i  163 (260)
T d1rwia_          87 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNNRV  163 (260)
T ss_dssp             SCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEE--GGGTEE
T ss_pred             cceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeec--cccccc
Confidence            555544444456678999999988777   355677777644332221112223446788988886 34432  345667


Q ss_pred             EEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEE
Q 017642          242 RVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       242 ~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                      ..++.++.....+. ..-.....|+++++|+++++....+. |..++..... ...+... .-.....|+++++|.++++
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~~-~~~~~~~-~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTT-STVLPFT-GLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCSC-CEECCCC-SCCCEEEEEECTTCCEEEE
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCCe-EEEEccC-CCCCeEEEEEeCCCCEEEE
Confidence            77666655444432 34456789999999998888877787 8888754433 2232221 2245789999999998777


Q ss_pred             EeCCCeEEEEE
Q 017642          321 SSDKGTVHVFN  331 (368)
Q Consensus       321 ~s~dg~i~iwd  331 (368)
                      -..+++|+.++
T Consensus       241 d~~~~rI~~i~  251 (260)
T d1rwia_         241 DRGNDRVVKLT  251 (260)
T ss_dssp             EGGGTEEEEEC
T ss_pred             ECCCCEEEEEe
Confidence            66667665444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.5e-08  Score=82.11  Aligned_cols=217  Identities=11%  Similarity=0.055  Sum_probs=132.4

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR  187 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~  187 (368)
                      |.|.|.+.....  ...  .+...+..-.|+|++..|+-.....  ....+.+.+...+.......+........|+|+|
T Consensus        21 l~i~d~dG~~~~--~l~--~~~~~~~sP~wSPDGk~IAf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg   94 (269)
T d2hqsa1          21 LRVSDYDGYNQF--VVH--RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG   94 (269)
T ss_dssp             EEEEETTSCSCE--EEE--EESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             EEEEcCCCCCcE--EEe--cCCCceeeeEECCCCCEEEEEEeec--cCcceeeeecccCceeEEeeeecccccceecCCC
Confidence            555555433332  222  3445567888998887766432221  1146777887777766666688889999999999


Q ss_pred             cEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEE--EecCcceeeeeeccCc
Q 017642          188 IIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDS  259 (368)
Q Consensus       188 ~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~  259 (368)
                      ..++    .++  .+..+.......... ...........++++++..+++.  ..+|...+  .+........+..+..
T Consensus        95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~i~~~~~~~~~~~~~~~~~~  171 (269)
T d2hqsa1          95 SKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNINGGAPQRITWEGS  171 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred             CeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceecc--cccCCceEeeeecccccceeeecccc
Confidence            9888    233  333333333333222 22333444566778887755543  34554444  5555555555666667


Q ss_pred             ceEEEEECCCCCEEEEEeCCC-c-EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q 017642          260 RIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKV  334 (368)
Q Consensus       260 ~i~~v~~sp~g~~l~s~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~  334 (368)
                      ......|+|+++.++..+.++ . .|.+.|...+..  .+..  +........|+|||+.|+..+.   ...|+++++..
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLS--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECC--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccc--eEee--cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            788889999999877766554 3 144445444433  2222  3456678899999998875543   34688999976


Q ss_pred             CCC
Q 017642          335 NSG  337 (368)
Q Consensus       335 ~~~  337 (368)
                      +..
T Consensus       248 ~~~  250 (269)
T d2hqsa1         248 RFK  250 (269)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=3.6e-08  Score=82.90  Aligned_cols=223  Identities=12%  Similarity=-0.001  Sum_probs=137.7

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .+..++++|||+++++.. ++.|..|+.+  .... ...  ........+++++++.++++...+     +.+..|+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~-~~~--~~~~~~~gla~~~dG~l~v~~~~~-----~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQ-IHA--TVEGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--CCEE-EEE--ECSSEEEEEEECTTSCEEEEEECT-----TSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEE-EEE--cCCCCcceEEEcCCCCeEEEecCC-----ceEEEEEecc
Confidence            588899999999988877 6657666633  3221 112  344567889999988877766544     6777776543


Q ss_pred             C--cEEEEE--ecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEecc--------CCCeeEEEEecCCCeEE
Q 017642          166 S--RCIGEL--SFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI--------ANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       166 ~--~~~~~~--~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~  230 (368)
                      .  ......  ........+++.+++++++   .++.+..+|...+.........        ........+..+++.++
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence            2  222222  2556788999999999888   3578888888776543322211        11112233444566655


Q ss_pred             EEeecCCCCeEEEEecCcc-eee--eeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEE
Q 017642          231 LVCPGLQKGQVRVEHYASK-RTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY  307 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~~-~~~--~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~  307 (368)
                      ++.  +..+.|..++.... ...  ...........++++++|+++++...++. |..++.. ++..........-...+
T Consensus       179 ~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p~-G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         179 VSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             eec--CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECCC-CCEEEEEecCCCCCCce
Confidence            543  45677766443332 111  11123344677999999998888888888 8888754 44332222211234588


Q ss_pred             EEEE---ecCCCEEEEEeC
Q 017642          308 SLAF---SSNAQWLAVSSD  323 (368)
Q Consensus       308 ~l~~---sp~~~~l~s~s~  323 (368)
                      +++|   ++|++.|+.++.
T Consensus       255 ~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEECCSTTTTTEEEEEEC
T ss_pred             EEEEcCCCCCCCEEEEECC
Confidence            9999   678888876554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.4e-08  Score=82.21  Aligned_cols=219  Identities=13%  Similarity=0.031  Sum_probs=128.7

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCe---EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCC
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN  156 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~  156 (368)
                      ...+...+..-+|||||+.||... +..   +.+.+.......  ...  .+........|++++..++.......  ..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~spdg~~i~~~~~~~~--~~  107 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVA--SFPRHNGAPAFSPDGSKLAFALSKTG--SL  107 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EEE--CCSSCEEEEEECTTSSEEEEEECTTS--SC
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--EEe--eeecccccceecCCCCeeeEeeecCC--cc
Confidence            334566788999999999998876 222   544554433332  222  34455566777777665554322100  02


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eCC--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEE
Q 017642          157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       157 ~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  230 (368)
                      .+..+.....................+++++..+.    .++  .|.+.++..+... .+...........|+++++.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         108 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEE
T ss_pred             ceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccceeE
Confidence            33344433444333333455555666777665554    233  5677777665433 3333455566788999999866


Q ss_pred             EEeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEEeCC---CcEEEEEECCCCceeEeeEeccCccc
Q 017642          231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       231 l~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                      ...  ...+...+  .+...... .+..+........|+|||+.|+..+..   .. |.++++..+... .+..  ..+.
T Consensus       187 ~~~--~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~-l~~~~~dg~~~~-~lt~--~~g~  259 (269)
T d2hqsa1         187 MVS--SNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDGRFKA-RLPA--TDGQ  259 (269)
T ss_dssp             EEE--ECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEE-EEEEETTSCCEE-ECCC--SSSE
T ss_pred             EEe--ecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcE-EEEEECCCCCEE-EEeC--CCCc
Confidence            554  33455555  33333333 333445566788999999988765543   24 889998766654 4544  4567


Q ss_pred             EEEEEEec
Q 017642          306 IYSLAFSS  313 (368)
Q Consensus       306 v~~l~~sp  313 (368)
                      +...+|||
T Consensus       260 ~~~p~WSP  267 (269)
T d2hqsa1         260 VKFPAWSP  267 (269)
T ss_dssp             EEEEEECC
T ss_pred             EEeEEeCC
Confidence            88899998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.08  E-value=2.8e-07  Score=77.67  Aligned_cols=239  Identities=10%  Similarity=0.078  Sum_probs=141.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeC--------CeEEEEEecCCCcceEEEcc-cCCceeEEEEEEeCCeE-EEEecCCCCCCCC
Q 017642           86 PTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNIL-ALVGGGPDPQYPL  155 (368)
Q Consensus        86 ~~v~~~~~s~~g~~l~~~~d--------~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~s~~~d~~~~~  155 (368)
                      .....++|.++|+++++...        +.|..||.++.......... ......-..+.+++++. ++++...      
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------   91 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------   91 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------
Confidence            34567899999998876543        33666665544432221110 01112245678887763 3333332      


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCC----ceeEEEEeeCccEEEeC------------------CcEEEEEcCCCeEEEEEec
Q 017642          156 NKVMIWDDHQSRCIGELS-FRS----EVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQIET  212 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~-~~~----~v~~~~~~~~~~~l~~d------------------~~i~vwd~~~~~~~~~~~~  212 (368)
                      +.|..++...+....... ..+    ....+++.++|.+.+.|                  |.|+.++. +++...... 
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-  169 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-  169 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-
Confidence            568888866543222111 111    35789999999887732                  23444443 344433332 


Q ss_pred             cCCCeeEEEEecCCC----eEEEEeecCCCCeEEEEecCc-ceee------eeec-cCcceEEEEECCCCCEEEEEeCCC
Q 017642          213 IANPKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYAS-KRTK------FIMA-HDSRIACFALTQDGQLLATSSTKG  280 (368)
Q Consensus       213 ~~~~v~~~~~~~~~~----~~~l~~~g~~dg~i~i~~~~~-~~~~------~~~~-~~~~i~~v~~sp~g~~l~s~~~dg  280 (368)
                      ....-+.++|+++++    .++++  .+..+.|..++... ..+.      .+.. +......|++..+|+++++....+
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~--d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVA--ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEE--ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             CcceeeeeEECCCCCcceeEEEEE--eecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence            222335688988765    33333  44567776643322 1111      1111 223457899999999887777778


Q ss_pred             cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEE-EEEeCCCeEEEEEccCCCC
Q 017642          281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       281 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~  337 (368)
                      . |.+||...++.+..+..  ......+++|.+|++.| ++.+.+|.|..+++.....
T Consensus       248 ~-I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         248 H-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             E-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             E-EEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            8 99999887877766665  33568899999999754 5666778888888765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=1.3e-06  Score=73.73  Aligned_cols=239  Identities=10%  Similarity=0.040  Sum_probs=145.1

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ  165 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~  165 (368)
                      .+..++|.++|++.++-. .+.|..|+.+.....  ..+. ........+++++++.++++...+. ...+.|...+...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~--~~~~-~~~~~p~gla~~~dG~l~va~~~~~-~~~~~i~~~~~~~  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--RPFV-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENG  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEE-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE--EEEe-CCCCCeeEEEECCCCCEEEEecCCC-ccceeEEEEcCCC
Confidence            457899999999666655 555777765543322  2221 3444567888888877666533210 0114566666665


Q ss_pred             CcEEEEEec---CCceeEEEEeeCccEEEeC---------CcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          166 SRCIGELSF---RSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       166 ~~~~~~~~~---~~~v~~~~~~~~~~~l~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +........   ......+++.++|++.+.|         +.+..++.. ++.+..+......-+.++|+++++.++++-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEec
Confidence            555444432   3457789999999887731         235555543 333333322233446699999999877654


Q ss_pred             ecCCCCeEEEEecCc--ceeee-------eeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEecc---
Q 017642          234 PGLQKGQVRVEHYAS--KRTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA---  301 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~--~~~~~-------~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~---  301 (368)
                        +..+.|..++.+.  .....       ..........|++..+|++.++....+. |.+|| .+|+.+.++....   
T Consensus       196 --~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         196 --TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGRDE  271 (319)
T ss_dssp             --GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTGGG
T ss_pred             --ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCcCC
Confidence              3467777755432  11111       1111223578999999998888888888 99999 5788888776421   


Q ss_pred             -CcccEEEEEEecCCCEEEEEeC----CCeEEEEEccC
Q 017642          302 -DRAEIYSLAFSSNAQWLAVSSD----KGTVHVFNLKV  334 (368)
Q Consensus       302 -~~~~v~~l~~sp~~~~l~s~s~----dg~i~iwd~~~  334 (368)
                       +...+.+++|.+++..+++...    ++.-.||.++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence             2235789999998877665543    23344555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=4e-06  Score=69.66  Aligned_cols=214  Identities=9%  Similarity=0.032  Sum_probs=140.4

Q ss_pred             EEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCC
Q 017642           89 LHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS  166 (368)
Q Consensus        89 ~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~  166 (368)
                      -+..|.+....|.-.+  .+.|..||.++++.. ...+    ...+.++.+..++.++++..       ..|.++|..++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~----~~~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL----PFMGSALAKISDSKQLIASD-------DGLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC----SSCEEEEEEEETTEEEEEET-------TEEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC----CCCcEEEEEecCCCEEEEEe-------CccEEeecccc
Confidence            3557887655554444  566888887765433 1222    23455667766766666543       56999999988


Q ss_pred             cEEEEEe--c---CCceeEEEEeeCccEEEe-------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEee
Q 017642          167 RCIGELS--F---RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP  234 (368)
Q Consensus       167 ~~~~~~~--~---~~~v~~~~~~~~~~~l~~-------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  234 (368)
                      +......  .   ...+..+.+.++|++.+.       .+.-.+|.+..++....+.. ...-+.++|+++++.++++- 
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~d-  166 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVD-  166 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEE-
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEee-
Confidence            7654433  1   235788999999988772       34566777777766555433 33446789999999876654 


Q ss_pred             cCCCCeEEEEecCcc------ee---eeeeccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCccc
Q 017642          235 GLQKGQVRVEHYASK------RT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE  305 (368)
Q Consensus       235 g~~dg~i~i~~~~~~------~~---~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~  305 (368)
                       +..+.|..++.+..      ..   .......+....+++..+|++.++.-..+. |..|| .+|+.+..+...  ...
T Consensus       167 -t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP--~~~  241 (295)
T d2ghsa1         167 -TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVP--GKQ  241 (295)
T ss_dssp             -TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECS--CSB
T ss_pred             -cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCC--CCc
Confidence             45677776544321      11   112233456789999999997777767777 99999 578888888763  346


Q ss_pred             EEEEEEe-cCCCEEEEE
Q 017642          306 IYSLAFS-SNAQWLAVS  321 (368)
Q Consensus       306 v~~l~~s-p~~~~l~s~  321 (368)
                      +++++|- +|.+.|+..
T Consensus       242 ~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEEESTTSCEEEEE
T ss_pred             eEEEEEeCCCCCEEEEE
Confidence            8999996 677666543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.5e-07  Score=83.78  Aligned_cols=224  Identities=8%  Similarity=0.033  Sum_probs=131.7

Q ss_pred             EEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEec-CCCCCC---CCCcEEEEeCCCCc
Q 017642           92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQY---PLNKVMIWDDHQSR  167 (368)
Q Consensus        92 ~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~d~~~---~~~~i~vwd~~~~~  167 (368)
                      .|.+++.++....++.|.+||+.+++.........-....+....+++++..++.. .....|   ..+.+.++|+.+++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            47788877765557779999998776543322221223345566778876554332 111111   13789999999887


Q ss_pred             EEEEEe---cCCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEEEEEeccC-CC-----------------eeEEEEec
Q 017642          168 CIGELS---FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIA-NP-----------------KGLCAVSQ  224 (368)
Q Consensus       168 ~~~~~~---~~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~~~~~~~~-~~-----------------v~~~~~~~  224 (368)
                      ......   ....+....|+|||+.++  .++.|++.+...+..++...... +.                 -..+.|+|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            544332   234566789999999988  79999999987776555442211 11                 13577999


Q ss_pred             CCCeEEEEeecCCCCeE---------------------------------EEEecCcceeee--e-----eccCcceEEE
Q 017642          225 GVGSLVLVCPGLQKGQV---------------------------------RVEHYASKRTKF--I-----MAHDSRIACF  264 (368)
Q Consensus       225 ~~~~~~l~~~g~~dg~i---------------------------------~i~~~~~~~~~~--~-----~~~~~~i~~v  264 (368)
                      ||+.++++..  .+..+                                 .+.+........  .     ......+..+
T Consensus       183 Dgk~iaf~~~--D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~  260 (465)
T d1xfda1         183 DGTRLAYAAI--NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV  260 (465)
T ss_dssp             TSSEEEEEEE--ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred             CCCeEEEEEe--cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence            9998665431  12221                                 112221111110  0     1122346789


Q ss_pred             EECCCCCEEEEEeC-CCc--EEEEEECCCCceeEeeEeccCcccE----EEEEEecCCCEE
Q 017642          265 ALTQDGQLLATSST-KGT--LVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWL  318 (368)
Q Consensus       265 ~~sp~g~~l~s~~~-dg~--~i~iwd~~~~~~~~~~~~~~~~~~v----~~l~~sp~~~~l  318 (368)
                      .|++++++++.... +..  .|.++|..++++...+... ..+.|    ....|++||+.+
T Consensus       261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSE
T ss_pred             EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCee
Confidence            99999986655432 221  2888999999876555432 22322    346799999843

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.75  E-value=2.3e-06  Score=73.54  Aligned_cols=227  Identities=11%  Similarity=0.048  Sum_probs=124.4

Q ss_pred             EEEEe---CCeEEEEEecCCCcceE--EEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCC-CcEEEEE-
Q 017642          100 FAAGT---DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGEL-  172 (368)
Q Consensus       100 l~~~~---d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~-~~~~~~~-  172 (368)
                      |.+|+   .+.|.++.++.....+.  ............-+++++++..+.....      +.+..|.+.. +...... 
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~------~~~~~~~i~~~~~~~~~~~   78 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEEE
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC------CcEEEEEEeCCCCeEEEee
Confidence            55564   34577666665443322  2211122333334778877766655443      6677776653 3332222 


Q ss_pred             -ecCCceeEEEEeeCccE--EE----eCCcEEEEEcCC-CeEE---------------EEEe-ccCCCeeEEEEecCCCe
Q 017642          173 -SFRSEVRSVKLRRDRII--VV----LEQKIFVYNFAD-LKLL---------------HQIE-TIANPKGLCAVSQGVGS  228 (368)
Q Consensus       173 -~~~~~v~~~~~~~~~~~--l~----~d~~i~vwd~~~-~~~~---------------~~~~-~~~~~v~~~~~~~~~~~  228 (368)
                       ........+.++++++.  ++    ..+.|..+.+.. +...               .... .....+..+.|+|+|++
T Consensus        79 ~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE
Confidence             24455667778888773  33    245666555421 1111               1100 11223567999999998


Q ss_pred             EEEEeecCCCCeEEEEec--Cccee--eee--eccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeE--e
Q 017642          229 LVLVCPGLQKGQVRVEHY--ASKRT--KFI--MAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVR--R  299 (368)
Q Consensus       229 ~~l~~~g~~dg~i~i~~~--~~~~~--~~~--~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~--~  299 (368)
                      ++++.  .....|.++..  .+...  ...  .......+.++|+|+|+++++..+ ++. |.+|++..++......  .
T Consensus       159 l~v~d--~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~~~~~~~~~~  235 (365)
T d1jofa_         159 LYSAD--LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             EEEEE--TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEE
T ss_pred             EEEee--CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE-EEEEEecCCCceEEEEeee
Confidence            76654  23446666432  22221  111  123456899999999998876665 555 9999987654322111  0


Q ss_pred             ---------------ccCcccEEEEEEecCCCEEEEEeC------CCeEEEEEccCC
Q 017642          300 ---------------GADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVN  335 (368)
Q Consensus       300 ---------------~~~~~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~  335 (368)
                                     ..+......+.++|||++|+++..      .+.|..|++...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             eccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence                           001123567899999999887642      223777776553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.70  E-value=4.1e-06  Score=68.59  Aligned_cols=234  Identities=7%  Similarity=-0.047  Sum_probs=127.4

Q ss_pred             EEcCC--CCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC-CCCCCCCcEEEEeCCCCcE
Q 017642           92 SFNQD--HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRC  168 (368)
Q Consensus        92 ~~s~~--g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~~i~vwd~~~~~~  168 (368)
                      ..+||  |+.++...++.|.+.|++.++..   .+. .+........|+|++..++.... +.......|.+++...++.
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~---~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR---KIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE---EEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE---EEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45788  99998888887888888765543   232 45566778889988876653221 1000113588888877766


Q ss_pred             EEEEec-------CCceeEEEEeeCccEEE-e--------CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          169 IGELSF-------RSEVRSVKLRRDRIIVV-L--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       169 ~~~~~~-------~~~v~~~~~~~~~~~l~-~--------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      ......       ........|+|+++.++ .        ...+...+...+.....   ...... ..+.+++...+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~  156 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPAT-HILFADGRRVIGR  156 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCS-EEEEETTEEEEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccc-eeeecCCCeEEEe
Confidence            543221       23456788999999887 1        12355666555543222   122222 3344555443332


Q ss_pred             eecCCCC----------eEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEeCCC-cEEEEEECCCCceeEeeEecc
Q 017642          233 CPGLQKG----------QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGA  301 (368)
Q Consensus       233 ~~g~~dg----------~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg-~~i~iwd~~~~~~~~~~~~~~  301 (368)
                      . ...+.          ...+.............+........++++.. +.....++ ..|.++|+.+++.. .+... 
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~-~lt~~-  232 (281)
T d1k32a2         157 N-TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR-KHTSF-  232 (281)
T ss_dssp             S-CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE-ECCCC-
T ss_pred             e-ccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceE-EeecC-
Confidence            2 11111          11111111222222233334445556665532 33333332 22778888766644 33321 


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR  340 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~  340 (368)
                      ....+  ..|+|||+.|+.. .++.|+++|+.+++..+-
T Consensus       233 ~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         233 TDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             CCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            12223  4689999988764 468899999988876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=2.5e-05  Score=64.16  Aligned_cols=191  Identities=14%  Similarity=0.133  Sum_probs=122.9

Q ss_pred             EEEEEEcCCC-CEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDH-GCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g-~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~  164 (368)
                      -..+++..+. .++++..  .+.|.+++..  .. ....+..........++.++++.+++.....     +.+.+++ .
T Consensus        72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~-~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~-----~~~~~~~-~  142 (279)
T d1q7fa_          72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKV-----MRVIIFD-Q  142 (279)
T ss_dssp             EEEEEEETTTTEEEEEECGGGCEEEEECTT--SC-EEEEECTTTCSCEEEEEECTTSCEEEEETTT-----TEEEEEC-T
T ss_pred             cccccccccccccceeccCCcccccccccc--cc-ceeecCCCcccccceeccccCCcEEEEeecc-----ceeeEec-c
Confidence            3445555543 3444433  3346566532  22 2223321334445667777777666665544     7788888 5


Q ss_pred             CCcEEEEEe---cCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEec--cCCCeeEEEEecCCCeEEEEeecC
Q 017642          165 QSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGL  236 (368)
Q Consensus       165 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~  236 (368)
                      +++.+..+.   +......+++.+++.+++   ..+.|++||. +++.+..+..  .......+++.++|+ ++++- ..
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad-~~  219 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE-ILIAD-NH  219 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEE-CS
T ss_pred             CCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCe-EEEEE-CC
Confidence            667777764   456778899999988777   4678999996 5677777632  333456789999997 45442 33


Q ss_pred             CCCeEEEEecCcceeeeeecc--CcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCc
Q 017642          237 QKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT  292 (368)
Q Consensus       237 ~dg~i~i~~~~~~~~~~~~~~--~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~  292 (368)
                      .++.|.+++.+++.+..+...  ......|++.++|.+++ ++.+.. |++|......
T Consensus       220 ~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~-v~~fr~~~~~  275 (279)
T d1q7fa_         220 NNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYR-LYIYRYVQLA  275 (279)
T ss_dssp             SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTE-EEEEECSCCC
T ss_pred             CCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCe-EEEEEeeeec
Confidence            456788888888877666432  34578999999997555 557788 9999876554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.62  E-value=2.4e-05  Score=65.65  Aligned_cols=197  Identities=15%  Similarity=0.061  Sum_probs=119.7

Q ss_pred             EEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEEe-------CCcEEEEEcCCC
Q 017642          133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-------EQKIFVYNFADL  204 (368)
Q Consensus       133 ~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-------d~~i~vwd~~~~  204 (368)
                      -.++|++++.++++....     +.|..|+...++....+. .......+++.+||++++.       .+.|...+...+
T Consensus        43 EG~~~D~~G~Ly~~D~~~-----g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             EeCEECCCCCEEEEECCC-----CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            356677766555554444     889999987776555544 5667889999999987772       123555555444


Q ss_pred             eEEEEEec--cCCCeeEEEEecCCCeEEEEeecC----CCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEE-e
Q 017642          205 KLLHQIET--IANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-S  277 (368)
Q Consensus       205 ~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~g~----~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~-~  277 (368)
                      ........  .......+++.++|+ +++.....    ..+.+...+.+++.+..+...-...+.|+|+|+++.|+.+ +
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            43333322  123356688899986 33321110    1123444444554444444334456889999999866544 5


Q ss_pred             CCCcEEEEEECCCC-ceeEeeE-----eccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          278 TKGTLVRIFNTLDG-TLLQEVR-----RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       278 ~dg~~i~iwd~~~~-~~~~~~~-----~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ..+. |..||+... .......     ..........|++..+|++.++....+.|.+||- +++.
T Consensus       197 ~~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~  260 (319)
T d2dg1a1         197 TANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYP  260 (319)
T ss_dssp             GGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCE
T ss_pred             cCCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcE
Confidence            5667 999987642 2211111     1001223568999999998888888999999995 4543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.61  E-value=1e-05  Score=67.35  Aligned_cols=191  Identities=9%  Similarity=-0.072  Sum_probs=122.2

Q ss_pred             ccCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        81 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      .......+.+++|.+||+++++.. ++.+.+|+......................+.+.+++.++++...+     +.+.
T Consensus        63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~-----~~i~  137 (302)
T d2p4oa1          63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYR-----GAIW  137 (302)
T ss_dssp             EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTT-----TEEE
T ss_pred             EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecccc-----ccce
Confidence            344556899999999999888877 6668888776554443332222344556788898999888887765     8899


Q ss_pred             EEeCCCCcEEEEEec-----------CCceeEEEEeeCccEEE--eCCcEEEEEcCCCeEE---EEEeccCCCeeEEEEe
Q 017642          160 IWDDHQSRCIGELSF-----------RSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLL---HQIETIANPKGLCAVS  223 (368)
Q Consensus       160 vwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~--~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~  223 (368)
                      .+|...+........           ......+.+..+..+++  ..+.|+.+++......   ..+. .......+++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d  216 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFD  216 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEB
T ss_pred             eeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEEC
Confidence            999887754433221           12345566665544444  4778888887553221   1111 22334568999


Q ss_pred             cCCCeEEEEeecCCCCeEEEEecCcceeeee--eccCcceEEEEE---CCCCCEEEEEeCCC
Q 017642          224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFAL---TQDGQLLATSSTKG  280 (368)
Q Consensus       224 ~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~--~~~~~~i~~v~~---sp~g~~l~s~~~dg  280 (368)
                      ++|+ ++++.  ..++.|..++.+++.....  ...-...++++|   .+|++.|+.++..+
T Consensus       217 ~dG~-l~va~--~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         217 VEGN-LYGAT--HIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             TTCC-EEEEC--BTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCC-EEEEE--cCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            9996 44443  3567787777776544333  333445799999   67888777665544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.5e-06  Score=73.49  Aligned_cols=252  Identities=10%  Similarity=0.013  Sum_probs=142.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCcee-----------------EEEEEEeCCeEEEEec
Q 017642           85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG-----------------VVEMLFRCNILALVGG  147 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~s~  147 (368)
                      ...+....|||||+.||...++.|.+.+........ .... +....                 -..+.|+|++..|+..
T Consensus       113 ~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~-lt~~-g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR-VVST-GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE-EECC-CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccceeeeccCCceEEEEecceEEEEecCCCceEE-Eecc-cCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            345666899999999999999988888876544331 1111 11111                 1356688888766653


Q ss_pred             CCCCC----------------------C-------CCCcEEEEeCCCCcEEEEEe-------cCCceeEEEEeeCccEEE
Q 017642          148 GPDPQ----------------------Y-------PLNKVMIWDDHQSRCIGELS-------FRSEVRSVKLRRDRIIVV  191 (368)
Q Consensus       148 ~~d~~----------------------~-------~~~~i~vwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~  191 (368)
                      ..|..                      |       ....+.++|+..+.......       ...-+..+.|++++++++
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~  270 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEE
Confidence            22200                      0       01246677776554322221       122367789999998777


Q ss_pred             --e-----CCcEEEEEcCCCeEEEEEeccC-CC----eeEEEEecCCCeEEEEee---cCCCCeEEEEe------cCcce
Q 017642          192 --L-----EQKIFVYNFADLKLLHQIETIA-NP----KGLCAVSQGVGSLVLVCP---GLQKGQVRVEH------YASKR  250 (368)
Q Consensus       192 --~-----d~~i~vwd~~~~~~~~~~~~~~-~~----v~~~~~~~~~~~~~l~~~---g~~dg~i~i~~------~~~~~  250 (368)
                        .     ...|.++|..+|++...+.... ..    .....|+++|+.++++..   ++.++.-++..      ..++.
T Consensus       271 ~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~  350 (465)
T d1xfda1         271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN  350 (465)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred             EEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCce
Confidence              2     2368899999998766554322 21    234678999987655421   12233333322      22344


Q ss_pred             eeeeeccCcceEEE-EECCCCCEEE-EEeCCC--cEEEEEEC--CCCceeEeeEe-ccCcccEEEEEEecCCCEEEEEeC
Q 017642          251 TKFIMAHDSRIACF-ALTQDGQLLA-TSSTKG--TLVRIFNT--LDGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSD  323 (368)
Q Consensus       251 ~~~~~~~~~~i~~v-~~sp~g~~l~-s~~~dg--~~i~iwd~--~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~  323 (368)
                      +..+....-.|..+ .|+.+++.|+ ++..++  . -+||.+  ..+.....+.. ........++.|||++++++..+.
T Consensus       351 ~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~-~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR-RQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC-CEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             eEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCc-eEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            44555555566665 6888877543 454432  2 345544  33322222211 013345679999999999885433


Q ss_pred             C---CeEEEEEccCCCCCC
Q 017642          324 K---GTVHVFNLKVNSGSA  339 (368)
Q Consensus       324 d---g~i~iwd~~~~~~~~  339 (368)
                      .   -.+.+++..+++...
T Consensus       430 ~~~~P~~~~~~~~~~~~~~  448 (465)
T d1xfda1         430 GPGVPMVTVHNTTDKKKMF  448 (465)
T ss_dssp             SSSSCCEEEEETTTCCEEE
T ss_pred             cCCCCeEEEEECCCCCEEE
Confidence            2   357888877766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=7.5e-06  Score=66.63  Aligned_cols=194  Identities=9%  Similarity=0.001  Sum_probs=115.3

Q ss_pred             eeEEEEEEeCCeEEEE-ecCCCCCCCCCcEEEEeCCCCcEEEE-EecCCceeEEEEeeCccEEEe---CCcEEEEEcCCC
Q 017642          130 IGVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL  204 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~-s~~~d~~~~~~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~---d~~i~vwd~~~~  204 (368)
                      ..-..+++++++..++ .....     +.+..++......... .........+++++++.+++.   ++.+++++-.++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSS-----CEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCC-----CEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            3446777887766544 44443     6677776443322221 123345678899999887773   345555554444


Q ss_pred             eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee-ccCcceEEEEECCCCCEEEEEeCCCcEE
Q 017642          205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLV  283 (368)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~~dg~~i  283 (368)
                      ..+.... .......+++.++++. + ++ ...+..+.............. ........++++++|+++++...++. |
T Consensus        89 ~~~~~~~-~~~~p~~iavd~~g~i-~-v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-i  163 (260)
T d1rwia_          89 QTVLPFD-GLNYPEGLAVDTQGAV-Y-VA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-V  163 (260)
T ss_dssp             CEECCCC-SCCSEEEEEECTTCCE-E-EE-EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-E
T ss_pred             eeeeeee-eeeeccccccccccee-E-ee-ccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-c
Confidence            4333222 2234567888888863 3 33 233444554444443332221 22234578999999998888788888 9


Q ss_pred             EEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 017642          284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN  335 (368)
Q Consensus       284 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~  335 (368)
                      ..+|....... .+... .-.....|++.++|+++++....+.|..++....
T Consensus       164 ~~~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         164 VKLEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cccccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            99997654433 33211 3345789999999998888878888888876543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=0.00022  Score=57.30  Aligned_cols=223  Identities=13%  Similarity=0.174  Sum_probs=143.5

Q ss_pred             EEEcCCCCEEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEE-eCCeEEEEecCCCCCCCCCcEEEEeCCCC-cE
Q 017642           91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQS-RC  168 (368)
Q Consensus        91 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~~~~~~i~vwd~~~~-~~  168 (368)
                      .-.+|..+.||.-....+.|||+++.+......+    ...+.-|.| +++.+.+++.        ..|+-|+++.. .+
T Consensus        68 AIMhP~~~IiALrag~~LQiFnletK~klks~~~----~e~VvfWkWis~~~L~lVT~--------taVYHW~~~g~s~P  135 (327)
T d1utca2          68 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  135 (327)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEESSSSEEEEECS--------SEEEEEESSSSCCC
T ss_pred             hhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc----CCCcEEEEecCCCEEEEEcC--------CceEEEcccCCCCc
Confidence            3457888888877777799999998777655444    335566777 4566777775        67999998532 56


Q ss_pred             EEEEe-c----CCceeEEEEeeCccEEE----------eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCC--e-EE
Q 017642          169 IGELS-F----RSEVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG--S-LV  230 (368)
Q Consensus       169 ~~~~~-~----~~~v~~~~~~~~~~~l~----------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~~  230 (368)
                      .+.+. |    ...|..-..+++.++++          ..|.+.+|..+.+ .-+.+++|......+.+.-+..  . +.
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEE
Confidence            66665 3    35677778888898887          1578999998654 4566777765444443332221  1 12


Q ss_pred             EEeecCCCCeEEEEecCc----ce------eeeee---ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEee
Q 017642          231 LVCPGLQKGQVRVEHYAS----KR------TKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV  297 (368)
Q Consensus       231 l~~~g~~dg~i~i~~~~~----~~------~~~~~---~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~  297 (368)
                      ++.-+...+.++|-....    ..      +..+.   .-.+-..++..++....+...+.-|. |++||+.++.++..-
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~~n  293 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEEEe
Confidence            222223345677633221    11      11111   12344567888888888999999999 999999999999877


Q ss_pred             EeccCcccEEEEEEecCCCEEEEEeCCCeEEE
Q 017642          298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV  329 (368)
Q Consensus       298 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~i  329 (368)
                      +-  ....|...+-..+..=+++...+|.|.-
T Consensus       294 RI--s~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         294 RI--SGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ec--CCCceEEeccCCCCceEEEECCCCeEEE
Confidence            65  3456665555555555556667787654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.33  E-value=0.00049  Score=56.62  Aligned_cols=178  Identities=10%  Similarity=-0.004  Sum_probs=112.3

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEec----cCCCeeEEEEecCCCeEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET----IANPKGLCAVSQGVGSLV  230 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~  230 (368)
                      +.|..||..+++. ..+.....+.++++.+++.+++ ....|.++|..+++.......    .....+.+.+.++|+. +
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~i-w  117 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGAL-W  117 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCE-E
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCE-E
Confidence            7899999888754 4566677889999999998887 677899999998875443321    1224567888888863 3


Q ss_pred             EEeec--CCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEE-eCCCcEEEEEECCCC------ceeEeeEecc
Q 017642          231 LVCPG--LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDG------TLLQEVRRGA  301 (368)
Q Consensus       231 l~~~g--~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~-~~dg~~i~iwd~~~~------~~~~~~~~~~  301 (368)
                      +....  ...+.-.++......+..+...-...+.++|+++++.|+.+ +..+. |..+++...      +....+....
T Consensus       118 ~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~-I~~~~~d~~~~~~~~~~~~~~~~~~  196 (295)
T d2ghsa1         118 IGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTG  196 (295)
T ss_dssp             EEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred             EEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce-eeEeeecccccccccceEEEeccCc
Confidence            33211  01122233332233333333333456789999999866555 45566 888886421      1111122111


Q ss_pred             CcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCC
Q 017642          302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG  337 (368)
Q Consensus       302 ~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~  337 (368)
                      ..+....+++..+|++.++.-..+.|..||- +++.
T Consensus       197 ~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~  231 (295)
T d2ghsa1         197 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH  231 (295)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred             ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcE
Confidence            3456788999999998877767788999984 3443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=0.00044  Score=55.57  Aligned_cols=219  Identities=13%  Similarity=0.153  Sum_probs=144.0

Q ss_pred             eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeC
Q 017642          107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD  186 (368)
Q Consensus       107 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~  186 (368)
                      .|.|.|+.......++.+.  ....+  |.+...-+++-++        ..+.++|+++.+.++.+.....|.--.|-.+
T Consensus        46 ~VvIidl~n~~~~~Rrpi~--AdsAI--MhP~~~IiALrag--------~~LQiFnletK~klks~~~~e~VvfWkWis~  113 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPIS--ADSAI--MNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL  113 (327)
T ss_dssp             EEEEEETTSTTSCEEEECC--CSEEE--ECSSSSEEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEESSS
T ss_pred             eEEEEECCCCCcceecccc--hhhhh--cCCCCcEEEEecC--------CeEEEEehhHhhhhceEEcCCCcEEEEecCC
Confidence            4889999877666555552  33222  2233333444442        6899999999999999998889988898877


Q ss_pred             ccEEE-eCCcEEEEEcCCC-eEEEEEeccC----CCeeEEEEecCCCeEEEEeecCC----CCeEEEEecCcceeeeeec
Q 017642          187 RIIVV-LEQKIFVYNFADL-KLLHQIETIA----NPKGLCAVSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMA  256 (368)
Q Consensus       187 ~~~l~-~d~~i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~g~~----dg~i~i~~~~~~~~~~~~~  256 (368)
                      ..+.+ .+..|+-|+++.. ++.+.+..|.    ..|-....+++.++++|..-...    .|.+.++..+.+.-+.+++
T Consensus       114 ~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieG  193 (327)
T d1utca2         114 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  193 (327)
T ss_dssp             SEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred             CEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccc
Confidence            66655 8999999999532 4555555443    24445566777887665432223    3566778888888888999


Q ss_pred             cCcceEEEEECCCC---CEEEEEeC---CCcEEEEEECCCCc---e-----eEeeE--eccCcccEEEEEEecCCCEEEE
Q 017642          257 HDSRIACFALTQDG---QLLATSST---KGTLVRIFNTLDGT---L-----LQEVR--RGADRAEIYSLAFSSNAQWLAV  320 (368)
Q Consensus       257 ~~~~i~~v~~sp~g---~~l~s~~~---dg~~i~iwd~~~~~---~-----~~~~~--~~~~~~~v~~l~~sp~~~~l~s  320 (368)
                      |.+.-..+.+..+.   ++++.+..   .+. ++|.++....   .     ...+.  ...-..-..++..++.-..+..
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~k-LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcE-EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence            97766555543222   23433322   245 8999886521   1     11111  1111234568889988888888


Q ss_pred             EeCCCeEEEEEccCCCCC
Q 017642          321 SSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       321 ~s~dg~i~iwd~~~~~~~  338 (368)
                      .+.-|.|++||++++...
T Consensus       273 iTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         273 ITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EETTSEEEEEETTTCCEE
T ss_pred             EecCcEEEEEEcccccEE
Confidence            899999999999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.31  E-value=0.00011  Score=61.30  Aligned_cols=197  Identities=11%  Similarity=0.081  Sum_probs=114.5

Q ss_pred             EEEEEEcCCCCEEEEEe-CCeEEEEEecCCCcceEEEcccCCc-eeEEEEEEeCCeEEEEecCCCC----------CCCC
Q 017642           88 LLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDP----------QYPL  155 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~d~----------~~~~  155 (368)
                      -..++|.++|..|+++. .+++..++.+............+.. .....+.+++++.+.++.....          .-..
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            56799999999877776 6678888865433221111100111 1235677888777666532110          0012


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCcc-----EEE---eCCcEEEEEcCC-CeEE-----EEEecc-CCCeeEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-----IVV---LEQKIFVYNFAD-LKLL-----HQIETI-ANPKGLC  220 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~---~d~~i~vwd~~~-~~~~-----~~~~~~-~~~v~~~  220 (368)
                      |.|..++. .++.......-..-+.++|++++.     +.+   ..+.|+.||+.. +...     ..+... ......+
T Consensus       153 G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         153 GSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             ceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            45555553 444444444444457889998753     333   367888888753 3221     111111 1123458


Q ss_pred             EEecCCCeEEEEeecCCCCeEEEEecCcc-eeeeeeccCcceEEEEECCCCC-EEEEEeCCCcEEEEEECC
Q 017642          221 AVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL  289 (368)
Q Consensus       221 ~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~~~~~~~~i~~v~~sp~g~-~l~s~~~dg~~i~iwd~~  289 (368)
                      ++..+|+ ++++.  ...+.|.+++.++. ....+.......++++|.++++ ++++.+.+|. |..+++.
T Consensus       232 avD~~Gn-lyVa~--~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~-i~~~~~~  298 (314)
T d1pjxa_         232 DFDEDNN-LLVAN--WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQ  298 (314)
T ss_dssp             EEBTTCC-EEEEE--ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECS
T ss_pred             EEecCCc-EEEEE--cCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCc-EEEEECC
Confidence            8888886 45543  24678888776654 3445666566789999999997 4556666777 7777764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.13  E-value=0.0003  Score=59.71  Aligned_cols=226  Identities=14%  Similarity=0.096  Sum_probs=134.4

Q ss_pred             EEEEc---CCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCC--------C---
Q 017642           90 HISFN---QDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--------Y---  153 (368)
Q Consensus        90 ~~~~s---~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~--------~---  153 (368)
                      .+.+.   +||++|.+..  +..|.+.|++..+......+........++....++..+++..+.+..        .   
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            45564   3899998888  555999999988876444543222222223333455555655444211        0   


Q ss_pred             --CCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE--e---C---------------------------------
Q 017642          154 --PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--L---E---------------------------------  193 (368)
Q Consensus       154 --~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~---d---------------------------------  193 (368)
                        ..+.+.++|..+.+....+...+....+.++++|++++  .   +                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence              01346788999999888888777888999999999887  1   1                                 


Q ss_pred             ---CcEEEEEcCCC---eEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc-ce--------eeee---e
Q 017642          194 ---QKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR--------TKFI---M  255 (368)
Q Consensus       194 ---~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~-~~--------~~~~---~  255 (368)
                         +.+.+.|.++.   ..+..+.....+ ..+.++|||+++++  +|..+.++.|.+.+. ..        ...+   .
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsP-HGV~vSPDGKyi~V--aGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNP-HGCNMAPDKKHLCV--AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSC-CCEEECTTSSEEEE--ECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCC-CceEECCCCCEEEE--eCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence               12233343321   122233333332 34789999997443  477899999966542 00        0001   1


Q ss_pred             ccCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCC----------ceeEeeEeccCcccEEEE------EEecCCCEEE
Q 017642          256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEVRRGADRAEIYSL------AFSSNAQWLA  319 (368)
Q Consensus       256 ~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~l------~~sp~~~~l~  319 (368)
                      ...-.....+|+..|.-..+.--|.. |.-|++...          ..+..+..+.   .+-.+      ...|||++|+
T Consensus       326 elglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~y---~~gh~~~~~g~t~~~dgk~l~  401 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHY---QPGHLKTVMGETLDATNDWLV  401 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSS---CEEEEEETTTTSTTCCSSEEE
T ss_pred             ccCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceecccccc---CCCCCccCcCCcCCCCCCEEE
Confidence            11223455688888876667778888 999998532          3444454421   12222      2357889888


Q ss_pred             EEe
Q 017642          320 VSS  322 (368)
Q Consensus       320 s~s  322 (368)
                      +..
T Consensus       402 ~~n  404 (459)
T d1fwxa2         402 CLS  404 (459)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=0.0013  Score=52.82  Aligned_cols=231  Identities=6%  Similarity=-0.057  Sum_probs=136.0

Q ss_pred             CCEEEEEeCCeEEEEEecCCCcc---eEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEE
Q 017642           97 HGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL  172 (368)
Q Consensus        97 g~~l~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~  172 (368)
                      |.+|+.+..+.|+-.+++.....   ....+. .+...+..++|+.. ..++.+...+     +.|+..++........+
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~-----~~I~~~~l~g~~~~~v~   74 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII   74 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCC-----CeEEEEEcccCCcEEEE
Confidence            45677777667877777643321   111121 33344666777643 3334443333     78999887765544444


Q ss_pred             e-cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecC
Q 017642          173 S-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA  247 (368)
Q Consensus       173 ~-~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~  247 (368)
                      . .-..+.++++..-+..+.    ..+.|.+.++........+.........+++.|....++....+.....|.--..+
T Consensus        75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            4 345788999986444443    35789999986554333333333566789999988877765434333334433444


Q ss_pred             cceeeeee-ccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC
Q 017642          248 SKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG  325 (368)
Q Consensus       248 ~~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg  325 (368)
                      +.....+. ..-.....|++++.++.|+.+. ..+. |...|+........+.+.   ....+|++. ++.+.++-...+
T Consensus       155 G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~~~v~~~~---~~P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCeEEEECCC---CCcEEEEEE-CCEEEEEECCCC
Confidence            44333332 2334568999998877776654 4566 999998655444334432   234578775 334444444667


Q ss_pred             eEEEEEccCCCCC
Q 017642          326 TVHVFNLKVNSGS  338 (368)
Q Consensus       326 ~i~iwd~~~~~~~  338 (368)
                      .|...|..+++..
T Consensus       230 ~I~~~~~~~g~~~  242 (263)
T d1npea_         230 SVIAMDLAISKEM  242 (263)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEEECCCCccc
Confidence            8888888776643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.08  E-value=0.00035  Score=59.25  Aligned_cols=186  Identities=10%  Similarity=0.088  Sum_probs=112.8

Q ss_pred             CeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe-cC---------------------------------------Ccee
Q 017642          140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR---------------------------------------SEVR  179 (368)
Q Consensus       140 ~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~---------------------------------------~~v~  179 (368)
                      +...+.+++..     |+|+|+-+.+++.++.+. +.                                       +...
T Consensus        12 eyy~f~SgG~s-----G~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~H   86 (459)
T d1fwxa2          12 DYYGFWSSGQS-----GEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLH   86 (459)
T ss_dssp             SEEEEECCBTT-----CEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBC
T ss_pred             cEEEEeeCCcc-----ceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcC
Confidence            45667777776     999999888887777652 10                                       1111


Q ss_pred             --EEEEe---eCccEEE----eCCcEEEEEcCCCeEEEEEecc-CCCeeEEEEecCCCeEEEEeecC------CC-----
Q 017642          180 --SVKLR---RDRIIVV----LEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL------QK-----  238 (368)
Q Consensus       180 --~~~~~---~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~g~------~d-----  238 (368)
                        .+.+.   +||++++    .+.+|-+.|+++.++.+.+... ...+..+...++++..++++.+.      .|     
T Consensus        87 HP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          87 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence              33343   3788888    4779999999999987755432 23345566777777767765321      01     


Q ss_pred             ------CeEEEEecC-cceeeeeeccCcceEEEEECCCCCEEEEEeCCCc--------------EE--------------
Q 017642          239 ------GQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--------------LV--------------  283 (368)
Q Consensus       239 ------g~i~i~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~~dg~--------------~i--------------  283 (368)
                            +.+.+.+.. .+....+.. ......+.++++|+++++.+.+..              .+              
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             chhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence                  122332322 222222222 334667899999998888764310              13              


Q ss_pred             ---------EEEECCCC---ceeEeeEeccCcccEEEEEEecCCCEEEEEe-CCCeEEEEEccC
Q 017642          284 ---------RIFNTLDG---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV  334 (368)
Q Consensus       284 ---------~iwd~~~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~  334 (368)
                               .+-|.++.   ..+..+..   ......+.++|||+++++++ .+.++-|+|+++
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CCcEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                     33443321   12222332   22456789999999988776 688999999974

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=0.0026  Score=51.02  Aligned_cols=216  Identities=6%  Similarity=-0.055  Sum_probs=127.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCcceEEEcccCCceeEEEEEEe--CCeEEEEecCCCCCCCCCcEE
Q 017642           84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        84 h~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      +...+..|+|....+.|....  .+.|+..+++.......  +. ..-.....++++  .+.++++-...      +.|.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--~~-~~~~~p~~iAvD~~~~~lY~~d~~~------~~I~  104 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--IR-QDLGSPEGIALDHLGRTIFWTDSQL------DRIE  104 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--EC-TTCCCEEEEEEETTTTEEEEEETTT------TEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--EE-eccccccEEEEeccCCeEEEeccCC------CEEE
Confidence            334578899998888777766  45588777765443322  21 222334445554  55566555443      7999


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-e--C-C--cEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEE
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L--E-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~--d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  232 (368)
                      +.++........+. .-.....+++.|...++. .  + +  .|..-++............-.....+++.+.++.++.+
T Consensus       105 ~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         105 VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEE
Confidence            99987655433333 346789999999766665 2  1 2  35555664333222232233344678998888877665


Q ss_pred             eecCCCCeEEEEecCcceeeeeeccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEeccCcccEEEEEE
Q 017642          233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF  311 (368)
Q Consensus       233 ~~g~~dg~i~i~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~  311 (368)
                      -  ...+.|..-+.++.....+........+|++.  +.+|+... ..+. |...|..+++.+..+... ......++.+
T Consensus       185 d--~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~-~~~~~~gi~v  258 (263)
T d1npea_         185 D--AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITI  258 (263)
T ss_dssp             E--TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEE
T ss_pred             e--CCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCE-EEEEECCCCccceEECCC-CCCCcceEEE
Confidence            3  34577777666665444433222234678775  44455444 5566 999999888877666432 2234446655


Q ss_pred             ecC
Q 017642          312 SSN  314 (368)
Q Consensus       312 sp~  314 (368)
                      .++
T Consensus       259 ~~~  261 (263)
T d1npea_         259 ALS  261 (263)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.88  E-value=0.0016  Score=52.42  Aligned_cols=86  Identities=7%  Similarity=-0.002  Sum_probs=59.5

Q ss_pred             CCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE----eC-----CcEEEEEcCCCeEEEE
Q 017642          139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LE-----QKIFVYNFADLKLLHQ  209 (368)
Q Consensus       139 ~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~d-----~~i~vwd~~~~~~~~~  209 (368)
                      ++.+++++.        +.|.+.|+..++..+...+.+.+...+|+|||+.++    .+     ..|.+++..+++..+.
T Consensus        12 G~~v~f~~~--------~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          12 GDRIIFVCC--------DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             TTEEEEEET--------TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             CCEEEEEeC--------CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            555555542        679999999888765444778889999999999888    12     2488888877765443


Q ss_pred             Eec------cCCCeeEEEEecCCCeEEEE
Q 017642          210 IET------IANPKGLCAVSQGVGSLVLV  232 (368)
Q Consensus       210 ~~~------~~~~v~~~~~~~~~~~~~l~  232 (368)
                      ...      .........|+|+++.+++.
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEE
Confidence            211      11234567899999976554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.0049  Score=49.51  Aligned_cols=228  Identities=8%  Similarity=-0.091  Sum_probs=133.3

Q ss_pred             EEEEEeCCeEEEEEecCCCcceEEEcccCCceeEEEEEEeCC-eEEEEecCCCCCCCCCcEEEEeCCCCc----EEEEEe
Q 017642           99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS  173 (368)
Q Consensus        99 ~l~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~~~~~~i~vwd~~~~~----~~~~~~  173 (368)
                      +|+.+....|+..+++......  .+  .....+..+.|+.. ..++.+....     +.|+-.++....    ....+.
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~--~~--~~~~~~~~id~d~~~~~lYw~D~~~-----~~I~~~~l~~~~~~~~~~~~~~   73 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTS--LI--PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS   73 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEE--EE--CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEEC
T ss_pred             EEEEECCCeEEEEECCCCccee--ee--CCCCceEEEEEEeCCCEEEEEECCC-----CEEEEEEecCCCCCcceEEEEe
Confidence            5666665668888887644332  22  33445667777753 3333333333     677777664322    111122


Q ss_pred             -cCCceeEEEEeeCccEEE----eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCc
Q 017642          174 -FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS  248 (368)
Q Consensus       174 -~~~~v~~~~~~~~~~~l~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~  248 (368)
                       ....+.++++...+..+.    ..+.|.+.++........+.........+++.|....++.+- .+..+.|.-...++
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~-~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD-WGTPAKIKKGGLNG  152 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE-CSSSCEEEEEETTS
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEec-cCCCcceeEeccCC
Confidence             335677888886554444    356899999876655444544455667889998877766654 33445565555555


Q ss_pred             ceeeeee-ccCcceEEEEECCCCCEEEEEe-CCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCe
Q 017642          249 KRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT  326 (368)
Q Consensus       249 ~~~~~~~-~~~~~i~~v~~sp~g~~l~s~~-~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~  326 (368)
                      .....+. ..-.....+++++.++.|+.+. ..+. |...|+........+..........+|++. ++.++.+-..++.
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~-I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCE-EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            5444443 3335678999998877666664 4556 888898655443333332122345678776 3344444456788


Q ss_pred             EEEEEccCCCCC
Q 017642          327 VHVFNLKVNSGS  338 (368)
Q Consensus       327 i~iwd~~~~~~~  338 (368)
                      |+..+..+++..
T Consensus       231 I~~~~~~~g~~~  242 (266)
T d1ijqa1         231 IFSANRLTGSDV  242 (266)
T ss_dssp             EEEEETTTCCCC
T ss_pred             EEEEECCCCcce
Confidence            888887776544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.44  E-value=0.011  Score=53.05  Aligned_cols=53  Identities=9%  Similarity=0.075  Sum_probs=36.2

Q ss_pred             EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |.-+|+.+|+.+-+....   .+..+-..+-.+.++++++.||.++-+|.++++..
T Consensus       446 l~AiD~~TG~~~W~~~~~---~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         446 IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeccCCCceeeEcCCC---CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            777788888877666542   11221122334667778999999999999998865

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.37  E-value=0.03  Score=50.02  Aligned_cols=55  Identities=9%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |. |.-||+.+++.+-++....   +..+-.++-.+.+++.|+.||.++.+|.++++..
T Consensus       438 G~-l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GA-LLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cc-eEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            45 7788999999887776432   2222233445678888999999999999999865

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.35  E-value=0.04  Score=49.27  Aligned_cols=53  Identities=4%  Similarity=0.048  Sum_probs=37.8

Q ss_pred             EEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       283 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |.-||+.+++.+-.++..   .+...=..+-.|.+|++|+.||.++.+|.++++..
T Consensus       459 l~AiD~~tGk~~W~~~~~---~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeCCCCCceEeeecCC---CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            667788888877776642   12222223446778888999999999999999875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.04  Score=43.85  Aligned_cols=205  Identities=8%  Similarity=-0.037  Sum_probs=118.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEe--CCeEEEEEecCCCc--ceEEEcc-cCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEE
Q 017642           85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFRE--IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM  159 (368)
Q Consensus        85 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~  159 (368)
                      ...+.+++|.+..+.|....  .+.|...+++....  .....+. .......+++.|..+.++++-...      +.|.
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~------~~I~  102 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL------GTVS  102 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT------TEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCC------CEEE
Confidence            34678899999888887666  44466666543221  1111121 012223344555566666665444      7899


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-e----CCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEe
Q 017642          160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC  233 (368)
Q Consensus       160 vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  233 (368)
                      +.++........+. .......+++.|...++. .    .+.|...++........+...-.....+++.+.++.++.+-
T Consensus       103 v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             eEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec
Confidence            99987666555444 456789999998654444 2    34677777754333333333334457789998888877653


Q ss_pred             ecCCCCeEEEEecCcceeeee-ec--cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeEe
Q 017642          234 PGLQKGQVRVEHYASKRTKFI-MA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR  299 (368)
Q Consensus       234 ~g~~dg~i~i~~~~~~~~~~~-~~--~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~  299 (368)
                        ...+.|..-+.++.....+ ..  .......|++. ++.++.+-..++. |...+..+++....+..
T Consensus       183 --~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~-I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         183 --SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             --TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             --CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe-EEEEECCCCcceEEEEc
Confidence              3467777755555433332 22  22345677775 3334444345566 88888777776655554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.08  E-value=0.041  Score=45.55  Aligned_cols=185  Identities=11%  Similarity=0.114  Sum_probs=91.1

Q ss_pred             EEEEeCCeEEEEecCCCC-C------CCCCcEEEEeCCCCcE-EEEEe-cCC-------ceeEEEE--eeCccEEE----
Q 017642          134 EMLFRCNILALVGGGPDP-Q------YPLNKVMIWDDHQSRC-IGELS-FRS-------EVRSVKL--RRDRIIVV----  191 (368)
Q Consensus       134 ~~~~~~~~~~~~s~~~d~-~------~~~~~i~vwd~~~~~~-~~~~~-~~~-------~v~~~~~--~~~~~~l~----  191 (368)
                      ++...+++.++++++... .      -..|.|.++|+.+.+. ...+. ...       ....+.+  ..++...+    
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            344556666665544210 0      1138899999876532 22332 111       2344443  23443222    


Q ss_pred             ---eCCcEEEEEcCCC--eEE--EEEecc-CCCeeEEEEecCCCeEEEEee--cCC------------CCeEEEEecCcc
Q 017642          192 ---LEQKIFVYNFADL--KLL--HQIETI-ANPKGLCAVSQGVGSLVLVCP--GLQ------------KGQVRVEHYASK  249 (368)
Q Consensus       192 ---~d~~i~vwd~~~~--~~~--~~~~~~-~~~v~~~~~~~~~~~~~l~~~--g~~------------dg~i~i~~~~~~  249 (368)
                         ...+|.+|++...  +..  .++... ....+.+++..++.  ++++.  ...            -+...++..+.+
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence               1346777776322  221  222211 12345677777765  23321  000            122334333344


Q ss_pred             eeeeeeccCcceEEEEECCCCCEEEEEeC-CCcEEEEEECCCCceeEeeEeccCcccEEEEEEec-CCCEEEEE
Q 017642          250 RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVS  321 (368)
Q Consensus       250 ~~~~~~~~~~~i~~v~~sp~g~~l~s~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~  321 (368)
                      ........-...+.|+++||+++|+.+.. .+. |++|++.....+.......-.+..-.+.+.+ +|.+++.+
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            44443333456789999999997766654 455 9999987543322221111234567788876 45555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.00  E-value=0.073  Score=44.52  Aligned_cols=115  Identities=12%  Similarity=-0.015  Sum_probs=70.5

Q ss_pred             CEEEEEEcCCCCEEEEEe-C-----C------eEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCC
Q 017642           87 TLLHISFNQDHGCFAAGT-D-----H------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP  154 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d-----~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~  154 (368)
                      .+.......+|++++.|+ +     +      .+.+||..++.-.........+...+....+..++.+++.++.+    
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~----   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC----
Confidence            344445567888888776 2     1      16789988765433222221233333345666777777776543    


Q ss_pred             CCcEEEEeCCCCcEEEEEe--cCCceeEEEEeeCccEEEe---------CCcEEEEEcCCCe
Q 017642          155 LNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---------EQKIFVYNFADLK  205 (368)
Q Consensus       155 ~~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~---------d~~i~vwd~~~~~  205 (368)
                      ...+.+||..+......-.  ....-..++..+|+++++.         -..+.+||..+.+
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            2689999988776543222  3334456777888888772         1368999998765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.97  E-value=0.079  Score=44.29  Aligned_cols=80  Identities=11%  Similarity=0.003  Sum_probs=45.9

Q ss_pred             EEEEEEcCCCCEEEEEe-C-CeEEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCC-CCCCCCCcEEEEeCC
Q 017642           88 LLHISFNQDHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDH  164 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~-d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~~i~vwd~~  164 (368)
                      ....++.++|++++.|+ + +.+.+||..+..-.....+. ..+.. ...+...++.+++.++. +.......+.+||..
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~-~~r~~-~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-VARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-SCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCccccccccc-ccccc-cceeeecCCceeeeccccccccccceeeeecCC
Confidence            34567889999999987 3 45999998765443222221 11111 23344455555555443 212222579999988


Q ss_pred             CCcEE
Q 017642          165 QSRCI  169 (368)
Q Consensus       165 ~~~~~  169 (368)
                      +.+..
T Consensus       156 ~~~W~  160 (387)
T d1k3ia3         156 SKTWT  160 (387)
T ss_dssp             TTEEE
T ss_pred             CCcee
Confidence            87543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.79  E-value=0.13  Score=44.03  Aligned_cols=244  Identities=11%  Similarity=0.095  Sum_probs=122.1

Q ss_pred             CEEEEEEcCCCCEEEEEe-CCe-----EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEE--ecCCC--------
Q 017642           87 TLLHISFNQDHGCFAAGT-DHG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV--GGGPD--------  150 (368)
Q Consensus        87 ~v~~~~~s~~g~~l~~~~-d~~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~d--------  150 (368)
                      .+..+++|||++++|.+- .+|     ++++|+++++.... .+. .  .....+.|.+++..+.  .....        
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i~-~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLE-R--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEE-E--ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-ccc-c--ccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            455678899999998765 222     89999988765422 221 1  1112455665544333  21110        


Q ss_pred             -CCCCCCcEEEEeCCCCcE--EEEEe-c--CCceeEEEEeeCccEEE---e---CCc--EEEEEcCCCe--------EEE
Q 017642          151 -PQYPLNKVMIWDDHQSRC--IGELS-F--RSEVRSVKLRRDRIIVV---L---EQK--IFVYNFADLK--------LLH  208 (368)
Q Consensus       151 -~~~~~~~i~vwd~~~~~~--~~~~~-~--~~~v~~~~~~~~~~~l~---~---d~~--i~vwd~~~~~--------~~~  208 (368)
                       .......|+.+.+.+...  +..+. .  ...+..+..+.++++++   .   +..  +.+.|+....        ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence             001124688888776532  33333 2  23466777889998876   1   333  4555653321        111


Q ss_pred             EEeccCCCeeEEEEecCCCeEEEEee-cCCCCeEEEEecCc---ceeeee-eccCcceEEEEECCCCCEEEEEe-CCCc-
Q 017642          209 QIETIANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYAS---KRTKFI-MAHDSRIACFALTQDGQLLATSS-TKGT-  281 (368)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~~~l~~~-g~~dg~i~i~~~~~---~~~~~~-~~~~~~i~~v~~sp~g~~l~s~~-~dg~-  281 (368)
                      .+........ . +..+++.+++.+. +..++.|..-+...   .....+ ..+...+..-.+...+.+|+... .++. 
T Consensus       282 ~~~~~~~~~~-~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         282 LIDNFEGEYD-Y-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             EECSSSSCEE-E-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             eecccccceE-E-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            2222222222 2 2234444444431 11234443322221   111223 33444444333333445555443 4442 


Q ss_pred             EEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEE-EE-e--CCCeEEEEEccCCCCC
Q 017642          282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA-VS-S--DKGTVHVFNLKVNSGS  338 (368)
Q Consensus       282 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~-s--~dg~i~iwd~~~~~~~  338 (368)
                      .|+++++.+++....+..  ..+.|..+...++...+. +. +  .-.+++-+|+.+++..
T Consensus       360 ~l~v~~~~~~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         360 TLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             EEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             EEEEEECCCCcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            288999988776544433  345566665555555433 22 2  3478999999887653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.68  E-value=0.2  Score=44.79  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |. |.-||+.+++.+-....   ..++.+-.++-.|.+++.|+.||.++.+|.++++..
T Consensus       453 G~-l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQ-IKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EE-EEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ce-EEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            45 77788888887766543   222222233446778888999999999999999865

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.47  E-value=0.24  Score=43.84  Aligned_cols=69  Identities=14%  Similarity=0.293  Sum_probs=46.6

Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCC-EEEEEeC--------------------CCeE
Q 017642          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSD--------------------KGTV  327 (368)
Q Consensus       269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~--------------------dg~i  327 (368)
                      .|.+++.|+.||. ++-+|.++|+.+-+++... ...-.-+.+..||+ +|++...                    .+.|
T Consensus       468 agglVF~G~~dg~-l~A~Da~tGe~LW~~~l~~-~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l  545 (560)
T d1kv9a2         468 AGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQS-GIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRL  545 (560)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEE
T ss_pred             CCCEEEEECCCCc-EEEEECCCCcEeEEEECCC-CccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEE
Confidence            4567888999999 9999999999999888632 11111256667886 4443322                    1368


Q ss_pred             EEEEccCCCCCC
Q 017642          328 HVFNLKVNSGSA  339 (368)
Q Consensus       328 ~iwd~~~~~~~~  339 (368)
                      .+|.|.-..+.+
T Consensus       546 ~~F~L~g~~~~~  557 (560)
T d1kv9a2         546 LVFALDGKAQLP  557 (560)
T ss_dssp             EEEEETCCCCCC
T ss_pred             EEEEeCCCCCCC
Confidence            888887555443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.86  E-value=0.37  Score=39.62  Aligned_cols=185  Identities=14%  Similarity=0.195  Sum_probs=103.7

Q ss_pred             eEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEee----C--cc-EEE-e---C--CcEEEEEcC-CCeE
Q 017642          141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----D--RI-IVV-L---E--QKIFVYNFA-DLKL  206 (368)
Q Consensus       141 ~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~----~--~~-~l~-~---d--~~i~vwd~~-~~~~  206 (368)
                      ..++++....     +-|.+||+ .|+.+..+. .+.+..+..-.    +  .. +++ .   +  ..|.+|.+. ....
T Consensus        40 ~SlI~gTdK~-----~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          40 NSKLITTNKK-----SGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GCEEEEEETT-----SCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             ccEEEEEcCc-----CCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            3344444444     66999997 487777664 45566665442    1  22 222 2   2  257778774 2223


Q ss_pred             EEEEecc-------CCCeeEEEE--ecCCCeEEEEeecCCCCeEEEEecC----c----ceeeeeeccCcceEEEEECCC
Q 017642          207 LHQIETI-------ANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYA----S----KRTKFIMAHDSRIACFALTQD  269 (368)
Q Consensus       207 ~~~~~~~-------~~~v~~~~~--~~~~~~~~l~~~g~~dg~i~i~~~~----~----~~~~~~~~~~~~i~~v~~sp~  269 (368)
                      +..+...       ...+..+|+  ++....+++++ ...+|.+..|...    +    ..++.+. -...+..|.+...
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv-~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde  190 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMV-TGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE  190 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEE-ECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEE-EcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC
Confidence            3333221       123556666  45544444444 4568887765432    1    2222332 3456889999998


Q ss_pred             CCEEEEEeCCCcEEEEEECCC-----CceeEeeEeccCcccEEEEEEec--CCC-EEEEEe-CCCeEEEEEccCC
Q 017642          270 GQLLATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFSS--NAQ-WLAVSS-DKGTVHVFNLKVN  335 (368)
Q Consensus       270 g~~l~s~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~l~~sp--~~~-~l~s~s-~dg~i~iwd~~~~  335 (368)
                      ...|+.+-++.. |..++..-     +..+....+....+.+..|+.-.  ++. +|++.+ .+++..|||...+
T Consensus       191 ~~~LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         191 YGSLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTEEEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCcEEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            889999988876 76666541     12222222222345677777643  333 555444 6788999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.7  Score=40.98  Aligned_cols=55  Identities=13%  Similarity=0.323  Sum_probs=40.8

Q ss_pred             CcEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCCeEEEEEccCCCCC
Q 017642          280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS  338 (368)
Q Consensus       280 g~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~  338 (368)
                      |. |.-+|+.+|+.+-+...+   .++..-..+-.|.++++|+.||.++.+|.++++..
T Consensus       466 G~-l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             Ce-EEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            45 777888888888777642   23333234456778888999999999999999875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.59  E-value=0.57  Score=41.46  Aligned_cols=66  Identities=17%  Similarity=0.343  Sum_probs=45.1

Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCceeEeeEeccCcccEEE--EEEecCCC-EEEEEeC----------------CCeEEE
Q 017642          269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS--LAFSSNAQ-WLAVSSD----------------KGTVHV  329 (368)
Q Consensus       269 ~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~v~~--l~~sp~~~-~l~s~s~----------------dg~i~i  329 (368)
                      .|.+|++|+.||. ++.+|.++|+.+.+++...   .+..  +.|..||+ |++..+.                .+.|.+
T Consensus       487 agglVF~G~~dg~-l~A~Da~TGe~LW~~~~~~---~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~  562 (573)
T d1kb0a2         487 AGNVVFQGTADGR-LVAYHAATGEKLWEAPTGT---GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYT  562 (573)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEECSS---CCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEE
T ss_pred             cCCEEEEECCCCe-EEEEECCCCcEeEEEECCC---CccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence            5678888999999 9999999999998887632   1211  55667887 4433221                235778


Q ss_pred             EEccCCCCC
Q 017642          330 FNLKVNSGS  338 (368)
Q Consensus       330 wd~~~~~~~  338 (368)
                      |.|.-..+.
T Consensus       563 F~l~g~~~~  571 (573)
T d1kb0a2         563 FVVGGKARM  571 (573)
T ss_dssp             EEETCBCCC
T ss_pred             EEeCCcCCC
Confidence            877655443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.69  Score=38.36  Aligned_cols=174  Identities=10%  Similarity=0.084  Sum_probs=99.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCeEEEEEecCC---------CcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcE
Q 017642           88 LLHISFNQDHGCFAAGTDHGFRIYNCDPF---------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV  158 (368)
Q Consensus        88 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i  158 (368)
                      ..-++.++...++++|+..+++|..++..         .........   -..+..++|+.+.+++..+        +.+
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~---ip~v~~vafs~d~l~v~~~--------~~l  107 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE---IPDVIFVCFHGDQVLVSTR--------NAL  107 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTTEEEEEEETTEEEEEES--------SEE
T ss_pred             cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC---CCCeEEEEeeCCEEEEEeC--------CCE
Confidence            44678888888888888778888775321         111111111   1247788898887666543        568


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEEeeCccEEE-eCCcEEEEEcCCCeEEEEEe-----ccCCCeeEEEEecCCCeEEE
Q 017642          159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIE-----TIANPKGLCAVSQGVGSLVL  231 (368)
Q Consensus       159 ~vwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l  231 (368)
                      ..++...-....... ....+..+.++|....++ .++.+.++++.+++......     .-.+.+.+++|++.|..+++
T Consensus       108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         108 YSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             EEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             EEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            888876654444433 566788999998876666 78999999998876433221     11234555666555544322


Q ss_pred             EeecCCCCeEEE--EecCcceeeeeeccCcceEEEEECCCCCEEEEE
Q 017642          232 VCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATS  276 (368)
Q Consensus       232 ~~~g~~dg~i~i--~~~~~~~~~~~~~~~~~i~~v~~sp~g~~l~s~  276 (368)
                         +. .+...+  .......+.........+.+|.|-.+..++++-
T Consensus       188 ---~~-g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 ---WR-NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ---EE-TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ---eC-CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence               21 111111  111111111111233467889998766665544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.89  E-value=1.2  Score=39.39  Aligned_cols=139  Identities=10%  Similarity=0.113  Sum_probs=80.7

Q ss_pred             CcEEEEeCCCCcEEEEEec-C----CceeEEEEeeCccEEE--------eCCcEEEEEcCCCeEEEEEeccCC-------
Q 017642          156 NKVMIWDDHQSRCIGELSF-R----SEVRSVKLRRDRIIVV--------LEQKIFVYNFADLKLLHQIETIAN-------  215 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~--------~d~~i~vwd~~~~~~~~~~~~~~~-------  215 (368)
                      +.|.-.|.++|+.+..... .    ..++.--.-.++.+++        .+|.|+-+|+++|+.+..+.....       
T Consensus       125 g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  204 (571)
T d2ad6a1         125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccc
Confidence            8899999999998877651 1    1222222223455554        267899999999999887643210       


Q ss_pred             ------------------------------Ce-eEEEEecCCCeEEEEeecC---------------CCCeEEEEecCcc
Q 017642          216 ------------------------------PK-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASK  249 (368)
Q Consensus       216 ------------------------------~v-~~~~~~~~~~~~~l~~~g~---------------~dg~i~i~~~~~~  249 (368)
                                                    .+ ...++.+....+++.+ +.               .+..+.++..+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~t-g~~~p~~~~~r~g~n~~s~svvAld~~TG~  283 (571)
T d2ad6a1         205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGM  283 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCC
T ss_pred             ccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeec-ccccCccccccccccccccceeeeeccchh
Confidence                                          01 1245556555444333 21               1233444656666


Q ss_pred             eeeeeeccCc---------ceEEEEECCCCC---EEEEEeCCCcEEEEEECCCCceeEe
Q 017642          250 RTKFIMAHDS---------RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQE  296 (368)
Q Consensus       250 ~~~~~~~~~~---------~i~~v~~sp~g~---~l~s~~~dg~~i~iwd~~~~~~~~~  296 (368)
                      .+-.+..+..         ......+..+|+   .++.++.+|. +.++|..+|+.+..
T Consensus       284 ~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~-l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         284 AKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEE
T ss_pred             heecccccCccccccccccccceeeeeccCccccceeeccccce-EEEEecCCCcEeee
Confidence            6555443211         111122223454   5678888999 99999999988754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.44  E-value=1.2  Score=37.59  Aligned_cols=203  Identities=9%  Similarity=0.039  Sum_probs=104.9

Q ss_pred             CceeEEEEEEeCCeEEEEe----cCCCCCCCCCcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eC-------
Q 017642          128 GGIGVVEMLFRCNILALVG----GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LE-------  193 (368)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~s----~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d-------  193 (368)
                      +...+..+.+++++..++-    +|.|    -..|+++|+.+++.+...-.......++|.+|+..++   .+       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e----~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSD----WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCS----CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCc----hheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccc
Confidence            3444455677777755542    2222    2579999999998765332222346788999988776   11       


Q ss_pred             ---------CcEEEEEcCCCeE--EEEEeccCC--CeeEEEEecCCCeEEEEeecCCCCeEEEEecC--cc---------
Q 017642          194 ---------QKIFVYNFADLKL--LHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SK---------  249 (368)
Q Consensus       194 ---------~~i~vwd~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~--~~---------  249 (368)
                               ..|+.+.+.+...  ...+.....  .+..+..+.+++.+++......+....+|...  ..         
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  278 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence                     2588888866432  233333332  34456778898886665433334443343221  10         


Q ss_pred             eeeeeeccCcceEEEEECCCCCEEEEEeC---CCcEEEEEECCCCce--eEeeEeccCcccEEEEEEecCCCEEEEE-eC
Q 017642          250 RTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVS-SD  323 (368)
Q Consensus       250 ~~~~~~~~~~~i~~v~~sp~g~~l~s~~~---dg~~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~  323 (368)
                      ....+........-+. +.++.+++....   ++. |...++.+...  ...+-.. +...+..-.+...+.+|+.. ..
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~-L~~~~~~~~~~~~w~~vi~~-~~~~~~~~~~~~~~~~lvl~~~~  355 (430)
T d1qfma1         279 WVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYR-LINIDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCYLH  355 (430)
T ss_dssp             CEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCE-EEEEETTBCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEEEE
T ss_pred             eeEeecccccceEEEe-cCCceeecccCcccccce-eEEecCCCCccccceEEecc-cCcceeeeEEEEECCEEEEEEEc
Confidence            0111222222233332 223334333332   355 66667665432  2233321 33445444444445555544 45


Q ss_pred             CC--eEEEEEccCCCC
Q 017642          324 KG--TVHVFNLKVNSG  337 (368)
Q Consensus       324 dg--~i~iwd~~~~~~  337 (368)
                      ++  .|+++++.+++.
T Consensus       356 ~~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         356 DVKNTLQLHDLATGAL  371 (430)
T ss_dssp             TTEEEEEEEETTTCCE
T ss_pred             CCEeEEEEEECCCCcE
Confidence            54  488899877654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.18  E-value=0.36  Score=43.06  Aligned_cols=80  Identities=11%  Similarity=0.013  Sum_probs=56.2

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEEE---eCCcEEEEEcCCCeEEEEEeccCCCe-eEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l  231 (368)
                      |.|.-||+.+++.+-...+...+..-.++-.+.+++   .||.++.+|.++|+.+.++....... .-+.+..+|+..++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEE
Confidence            789999999999988877555554434444444443   69999999999999999986543322 23667778876554


Q ss_pred             Eeec
Q 017642          232 VCPG  235 (368)
Q Consensus       232 ~~~g  235 (368)
                      +.+|
T Consensus       533 v~~G  536 (596)
T d1w6sa_         533 IYYG  536 (596)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            4434

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=1.9  Score=33.58  Aligned_cols=65  Identities=12%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             CCCEEEEEeCCC-----cEEEEEECCCCceeEeeEeccCcccEEEEEEecCCCEEEEEeCCC-----eEEEEEccCCC
Q 017642          269 DGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS  336 (368)
Q Consensus       269 ~g~~l~s~~~dg-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~~  336 (368)
                      ++++++.|+.++     . +.++|..+.+... +........-.+++. -++++++.|+.++     .|.+||+++.+
T Consensus       195 ~~~i~i~GG~~~~~~~~~-~~~~~~~~~~~~~-~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNS-VERYDVETETWTF-VAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eeeEEEecCccccccccc-eeeeeecceeeec-ccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            456666665443     3 6778876655432 221111111112332 3678888776543     37889988754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.17  E-value=2.5  Score=34.46  Aligned_cols=142  Identities=11%  Similarity=0.208  Sum_probs=81.6

Q ss_pred             eCccEEE-e--CCcEEEEEcCCCeEEEEEeccCCCeeEEEEec----CCCeEEEEe-ecCCCC--eEEEEecCc--ceee
Q 017642          185 RDRIIVV-L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ----GVGSLVLVC-PGLQKG--QVRVEHYAS--KRTK  252 (368)
Q Consensus       185 ~~~~~l~-~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~~-~g~~dg--~i~i~~~~~--~~~~  252 (368)
                      |+..+++ .  .+-|++||+ +|+.++.+.  .+.++.+.+..    .++...+++ +.-.++  .|.+|....  ..+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3455555 3  345999998 488777764  34555555432    333332332 222223  455555442  2233


Q ss_pred             eeecc-------CcceEEEEE--CCC-CC-EEEEEeCCCcEEEEEECC---CC----ceeEeeEeccCcccEEEEEEecC
Q 017642          253 FIMAH-------DSRIACFAL--TQD-GQ-LLATSSTKGTLVRIFNTL---DG----TLLQEVRRGADRAEIYSLAFSSN  314 (368)
Q Consensus       253 ~~~~~-------~~~i~~v~~--sp~-g~-~l~s~~~dg~~i~iwd~~---~~----~~~~~~~~~~~~~~v~~l~~sp~  314 (368)
                      .+...       ...+..+++  ++. |. ++++...+|. +..|.+.   .+    +.++.+..   ...+..+.+...
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~-v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGE-FEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCce-EEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCC
Confidence            22211       123566666  664 54 5666677887 8888763   23    34445553   457899999999


Q ss_pred             CCEEEEEeCCCeEEEEEcc
Q 017642          315 AQWLAVSSDKGTVHVFNLK  333 (368)
Q Consensus       315 ~~~l~s~s~dg~i~iwd~~  333 (368)
                      ...|..+-++..|+.++++
T Consensus       191 ~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             TTEEEEEETTTEEEEEESS
T ss_pred             CCcEEEecCccceEEEEec
Confidence            8999988877666555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.42  E-value=3.6  Score=34.80  Aligned_cols=58  Identities=12%  Similarity=-0.066  Sum_probs=38.6

Q ss_pred             CCceeEEEEeeCccEEE-e--CCcEEEEEcCCCeEEEEEe--------ccCCCeeEEEEecC---CCeEEEE
Q 017642          175 RSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQIE--------TIANPKGLCAVSQG---VGSLVLV  232 (368)
Q Consensus       175 ~~~v~~~~~~~~~~~l~-~--d~~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~---~~~~~l~  232 (368)
                      -...++|+|.||+++++ .  .|.|++++..+++......        ........++++|+   ...+++.
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            35678999999999888 3  5899999987765433221        11234457899885   3444554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.32  E-value=0.35  Score=43.03  Aligned_cols=80  Identities=13%  Similarity=-0.020  Sum_probs=56.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEEeeCccEE-E--eCCcEEEEEcCCCeEEEEEeccCCCe-eEEEEecCCCeEEE
Q 017642          156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-V--LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVL  231 (368)
Q Consensus       156 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~--~d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l  231 (368)
                      |.|.-+|+.+|+.+-.+....++..-.++-.+.++ +  .||.++.+|.++|+.+..++...... .-+.+..+|+..++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            67999999999999888855555443344444444 4  59999999999999999987544322 23677788876544


Q ss_pred             Eeec
Q 017642          232 VCPG  235 (368)
Q Consensus       232 ~~~g  235 (368)
                      +.+|
T Consensus       546 i~ag  549 (582)
T d1flga_         546 VTVG  549 (582)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            4434

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.26  E-value=4.9  Score=32.99  Aligned_cols=137  Identities=14%  Similarity=0.131  Sum_probs=71.6

Q ss_pred             CceeEEEEeeCccEEEeCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceeeeee
Q 017642          176 SEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM  255 (368)
Q Consensus       176 ~~v~~~~~~~~~~~l~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~~~~  255 (368)
                      ..|..++|+.+...+..++.+..++...-...........++..+.+.|.  ...++.   .++.+.++.........+.
T Consensus        87 p~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~---~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          87 PDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILN---SVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEE---TTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeeCCEEEEEeCCCEEEEEeeccccccccccccccccceecCCc--eeEEEe---cCCCEEEEEeccCcccccc
Confidence            36888999877544447888999988664433333334445555665553  333332   3566666444332221111


Q ss_pred             ------ccCcceEEEEECCCCCEEEEEeCCCcEEEEE-ECCCCceeEeeEeccCcccEEEEEEecCCCEEEEE
Q 017642          256 ------AHDSRIACFALTQDGQLLATSSTKGTLVRIF-NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS  321 (368)
Q Consensus       256 ------~~~~~i~~v~~sp~g~~l~s~~~dg~~i~iw-d~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~  321 (368)
                            .-.+.+.+++|++.|+.++++..++  ..+- ++.....+.....  ....|.+|.|-.+..++++-
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~--~q~k~~i~~~~~~~~p~~--~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE--MEKQFEFSLPSELEELPV--EEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCHHHHTSCT--TTSEEEEEEESSSSEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCCCc--eeeccCCCCccccCCCcC--CCcceeEEEEecCceEEEEE
Confidence                  1134567777777777776664332  2221 1111111100001  23468889998776666654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.01  E-value=3.4  Score=30.82  Aligned_cols=168  Identities=10%  Similarity=0.066  Sum_probs=87.8

Q ss_pred             EEEEEecCCCcceEEEcccCCceeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEEEe----------cCCc
Q 017642          108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----------FRSE  177 (368)
Q Consensus       108 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----------~~~~  177 (368)
                      +.+-++......  ..+.......+.++.++....++.+++.|      ...+|-++.|+......          ....
T Consensus        84 i~~~Nlk~~GEE--~~i~spk~vRI~S~~yddk~vvF~Gased------~~~LYviegGklrkL~~vPpFsFVtDI~~d~  155 (313)
T d2hu7a1          84 LFKVNTSRPGEE--QRLEAVKPMRILSGVDTGEAVVFTGATED------RVALYALDGGGLRELARLPGFGFVSDIRGDL  155 (313)
T ss_dssp             EEEEETTSTTCE--EECTTSCSBEEEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEEEESSCEEEEEEETTE
T ss_pred             EEEEccCCCCee--eEecCCceEEEEEeeecCceEEEecccCC------ceEEEEEeCCceeeeccCCCcceEEeccCCe
Confidence            444444432333  34442344889999999999999998884      67777766775443322          1223


Q ss_pred             eeEEEEeeCcc---EEE--eCCcEEEEEcCCCeEEEEEeccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcceee
Q 017642          178 VRSVKLRRDRI---IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK  252 (368)
Q Consensus       178 v~~~~~~~~~~---~l~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~~~~  252 (368)
                      |..+.+-..+.   +++  ..|.+++++-..|..-.........| .-.+-.-++..+          |. .+...+...
T Consensus       156 I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsyw----------it-~D~~s~~ye  223 (313)
T d2hu7a1         156 IAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREARL----------VT-VDPRDGSVE  223 (313)
T ss_dssp             EEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEE----------EE-ECTTTCCEE
T ss_pred             EEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeEccCcee-eeccCCCCceEE----------EE-EecccCcee
Confidence            33443332211   111  24555555554443332222222222 111111122111          11 222222222


Q ss_pred             eee-------c-cCcceEEEEECCCCCEEEEEeCCCcEEEEEECCCCceeEeeE
Q 017642          253 FIM-------A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR  298 (368)
Q Consensus       253 ~~~-------~-~~~~i~~v~~sp~g~~l~s~~~dg~~i~iwd~~~~~~~~~~~  298 (368)
                      .++       . ....|+-+-+.|++++++.+-.||. -++|.  +|+.+..-+
T Consensus       224 rve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~-s~lF~--nGk~in~p~  274 (313)
T d2hu7a1         224 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFI--DGERVEAPQ  274 (313)
T ss_dssp             ECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEE--TTEEECCCS
T ss_pred             eeecCcccceeecceEEEeeeeCCCCcEEEEEecCCc-hheee--cceEecCCC
Confidence            211       1 2235777889999999999999999 89996  677665443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=81.86  E-value=9.3  Score=29.33  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=32.8

Q ss_pred             eeEEEEEEeCCeEEEEecCCCCCCCCCcEEEEeCCCCcEEEE-EecCCceeEEEEeeCccEEEeCCcEEEEEcC
Q 017642          130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA  202 (368)
Q Consensus       130 ~~~~~~~~~~~~~~~~s~~~d~~~~~~~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~d~~i~vwd~~  202 (368)
                      ..+..++-.....+++.   |     |+|..|-.+..-.+.. ......|..+..-.....++.|+.++.|...
T Consensus        26 ~~i~~va~G~~h~~al~---d-----G~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al~dg~v~~wG~~   91 (273)
T d1jtdb_          26 SGVDAIAGGYFHGLALK---G-----GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGN   91 (273)
T ss_dssp             SSEEEEEECSSEEEEEE---T-----TEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECC
T ss_pred             CCcEEEEccCCEEEEEE---C-----CEEEEEeCCCCCceeeeecccccceEEecCCCceeeeeeeeeeccCCC
Confidence            34566655444443332   3     7888886543321111 1123445555543333333378888888753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=80.31  E-value=13  Score=29.84  Aligned_cols=118  Identities=8%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             CcEEEEeCCCCcE----EEEEe--cCCceeEEEEeeCccEEEe-C-----------------CcEEEEEcCCCeEEEEEe
Q 017642          156 NKVMIWDDHQSRC----IGELS--FRSEVRSVKLRRDRIIVVL-E-----------------QKIFVYNFADLKLLHQIE  211 (368)
Q Consensus       156 ~~i~vwd~~~~~~----~~~~~--~~~~v~~~~~~~~~~~l~~-d-----------------~~i~vwd~~~~~~~~~~~  211 (368)
                      .+|.+|++.....    +.++.  ......++.+..++.+++. |                 +...+|....++......
T Consensus       124 ~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~  203 (340)
T d1v04a_         124 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE  203 (340)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE
T ss_pred             ceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC
Confidence            5788877654321    22222  2345788998888887772 1                 234555554444333232


Q ss_pred             ccCCCeeEEEEecCCCeEEEEeecCCCCeEEEEecCcc-eeee--eeccCcceEEEEECC-CCCEEEEE
Q 017642          212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKF--IMAHDSRIACFALTQ-DGQLLATS  276 (368)
Q Consensus       212 ~~~~~v~~~~~~~~~~~~~l~~~g~~dg~i~i~~~~~~-~~~~--~~~~~~~i~~v~~sp-~g~~l~s~  276 (368)
                       .-..-+.+++++|++.++++.+  ..+.|+++..... ....  ...-....-.+.+.+ +|.+.+.+
T Consensus       204 -~l~~pNGI~~s~d~~~lyVa~t--~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         204 -GFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             -EESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             -CCCccceeEECCCCCEEEEEeC--CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence             2344567999999998777653  4677887544432 2211  112334567788876 45555444