Citrus Sinensis ID: 017643

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFRKASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYGHSH
cEEEEEcccHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHccccccEEEEEccHHHHcccccccccccccHHHHHHHHcHHHHcccccEEEEEcccEEEEcccHHHHHccccccEEEEEccccccccccccccccccHHHHHHcccccccccccccHHccHHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHcccEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHccccccccccc
ccEEEEHHHHHHHHHHHHHHcHHHccccHHHHHHHHccccccEccccccccccccccHHHccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEccHHHHHcccccccEEcccHHccccccccccccccccHHHHHHcccccccHEccccEEEEHHHHHHccHHHHHHHHHHHHHccEEEEccccccEEEEEccccccccccHcEcccccccccccccccccccEEEEEEccccccEEEccccccccccHcccccccccccc
MLWIMRLSGFFSAAMVMIVlspslqsfppaeairsshldsylrlpskvspidastrfsfrkasvfrnadecgstsynvngggasvcdpsLVHVAITLDVEYLRGSIAAVHSILqhstcpenifFHFLVSDTNLETLVrstfpqlkfkvyyfdpEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTtslgsrtigapeychanfskyftatfwsdkrfsatfngrkpcyfntgVVVIDLVKWRRVGYTRRIERWMEIQKSdriyelgslppfLLVFAGhvapiehrwnqhglggdnvrgscrnlhpgpvsllhwsgsgkpwlrldsrrpcpldalwapydlyghsh
MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPskvspidastrfSFRKASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTslgsrtigapEYCHANFSKYFTATFWSDKRFSATfngrkpcyfntgvvvidlvkwrrvgytrriERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALwapydlyghsh
MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFRKASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYGHSH
*LWIMRLSGFFSAAMVMIVLSPSL****************YLR***********TRFSFRKASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLY****
*LWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLD*YLRLPSKVSPIDASTRFSFRKASVF***********************SLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYG***
MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFRKASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYGHSH
MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFRKASVFRNADECGSTSY*****GASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYGHS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFRKASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYGHSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
Q8VYF4361 Probable galacturonosyltr yes no 0.972 0.991 0.819 1e-177
Q9FWY9361 Probable galacturonosyltr no no 0.972 0.991 0.735 1e-160
O04253346 Probable galacturonosyltr no no 0.929 0.988 0.763 1e-160
O04536390 Probable galacturonosyltr no no 0.836 0.789 0.686 1e-128
O48684393 Probable galacturonosyltr no no 0.836 0.783 0.650 1e-123
Q9LHD2365 Probable galacturonosyltr no no 0.836 0.843 0.625 1e-119
Q9M8J2351 Probable galacturonosyltr no no 0.807 0.846 0.605 1e-115
Q0V7R1345 Probable galacturonosyltr no no 0.834 0.889 0.635 1e-112
Q9S7G2341 Probable galacturonosyltr no no 0.817 0.882 0.598 1e-109
Q9LN68351 Probable galacturonosyltr no no 0.853 0.894 0.620 1e-107
>sp|Q8VYF4|GATL7_ARATH Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1 Back     alignment and function desciption
 Score =  621 bits (1602), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 300/366 (81%), Positives = 324/366 (88%), Gaps = 8/366 (2%)

Query: 1   MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFR 60
           MLWIMR SG FSAA+V+IVLSPSLQSFPPAEAIRSSHLD+YLR PS   P     RFSFR
Sbjct: 1   MLWIMRFSGLFSAALVIIVLSPSLQSFPPAEAIRSSHLDAYLRFPSSDPP---PHRFSFR 57

Query: 61  KASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPE 120
           KA VFRNA              + VC+PSLVHVAITLD EYLRGSIAAVHSIL+HS+CPE
Sbjct: 58  KAPVFRNA-----ADCAAADIDSGVCNPSLVHVAITLDFEYLRGSIAAVHSILKHSSCPE 112

Query: 121 NIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLA 180
           ++FFHFLVS+T+LE+L+RSTFP+LK KVYYFDPEIVR LISTSVRQALEQPLNYARNYLA
Sbjct: 113 SVFFHFLVSETDLESLIRSTFPELKLKVYYFDPEIVRTLISTSVRQALEQPLNYARNYLA 172

Query: 181 DLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRF 240
           DLLEPCVRRVIYLDSDL+VVDDIAKLW T LGS+TIGAPEYCHANF+KYFT  FWSD+RF
Sbjct: 173 DLLEPCVRRVIYLDSDLIVVDDIAKLWMTKLGSKTIGAPEYCHANFTKYFTPAFWSDERF 232

Query: 241 SATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAG 300
           S  F+GRKPCYFNTGV+V+DL +WRRVGYT  IE+WMEIQKSDRIYELGSLPPFLLVFAG
Sbjct: 233 SGAFSGRKPCYFNTGVMVMDLERWRRVGYTEVIEKWMEIQKSDRIYELGSLPPFLLVFAG 292

Query: 301 HVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAP 360
            VAPIEHRWNQHGLGGDNVRGSCR+LHPGPVSLLHWSGSGKPW RLDSRRPCPLD LWAP
Sbjct: 293 EVAPIEHRWNQHGLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWFRLDSRRPCPLDTLWAP 352

Query: 361 YDLYGH 366
           YDLYGH
Sbjct: 353 YDLYGH 358
May be involved in pectin and/or xylans biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q9FWY9|GATL5_ARATH Probable galacturonosyltransferase-like 5 OS=Arabidopsis thaliana GN=GATL5 PE=2 SV=1 Back     alignment and function description
>sp|O04253|GATL6_ARATH Probable galacturonosyltransferase-like 6 OS=Arabidopsis thaliana GN=GATL6 PE=2 SV=1 Back     alignment and function description
>sp|O04536|GATL9_ARATH Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1 Back     alignment and function description
>sp|O48684|GATL8_ARATH Probable galacturonosyltransferase-like 8 OS=Arabidopsis thaliana GN=GATL8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHD2|GATLA_ARATH Probable galacturonosyltransferase-like 10 OS=Arabidopsis thaliana GN=GATL10 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8J2|GATL4_ARATH Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1 Back     alignment and function description
>sp|Q0V7R1|GATL3_ARATH Probable galacturonosyltransferase-like 3 OS=Arabidopsis thaliana GN=GATL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7G2|GATL2_ARATH Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LN68|GATL1_ARATH Probable galacturonosyltransferase-like 1 OS=Arabidopsis thaliana GN=GATL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
224068414367 glycosyltransferase, CAZy family GT8 [Po 0.989 0.991 0.849 0.0
224128416368 predicted protein [Populus trichocarpa] 0.994 0.994 0.820 1e-179
449436453367 PREDICTED: probable galacturonosyltransf 0.997 1.0 0.801 1e-178
356534929359 PREDICTED: probable galacturonosyltransf 0.964 0.988 0.822 1e-177
22331906361 putative galacturonosyltransferase-like 0.972 0.991 0.819 1e-175
356500226357 PREDICTED: probable galacturonosyltransf 0.967 0.997 0.818 1e-175
225437483450 PREDICTED: probable galacturonosyltransf 0.986 0.806 0.785 1e-173
7362746357 putative protein [Arabidopsis thaliana] 0.961 0.991 0.817 1e-173
297817602354 hypothetical protein ARALYDRAFT_486764 [ 0.961 1.0 0.817 1e-172
449469050367 PREDICTED: probable galacturonosyltransf 0.994 0.997 0.790 1e-172
>gi|224068414|ref|XP_002302739.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222844465|gb|EEE82012.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/365 (84%), Positives = 338/365 (92%), Gaps = 1/365 (0%)

Query: 1   MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFR 60
           MLWI+R SGFFSAA+VMI+LSPS QSFPPAEAI SS+LD +LR P  +SP D+ T+ SFR
Sbjct: 1   MLWILRFSGFFSAALVMIILSPSFQSFPPAEAIHSSNLDGHLRFPLLLSPADSLTQLSFR 60

Query: 61  KASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPE 120
           K+++FRNADECG + +  + G  SVC PSLVHVAITLDVEYLRGS+AAVHSILQHS CPE
Sbjct: 61  KSTIFRNADECGFSDHQ-SRGKTSVCYPSLVHVAITLDVEYLRGSVAAVHSILQHSMCPE 119

Query: 121 NIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLA 180
           N+FFHFLVS+TNLE+LVRSTFPQLKFKVYYFDPEIVR+LISTSVRQALEQPLNYARNYLA
Sbjct: 120 NVFFHFLVSETNLESLVRSTFPQLKFKVYYFDPEIVRSLISTSVRQALEQPLNYARNYLA 179

Query: 181 DLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRF 240
           DLLEPCV+RVIYLDSDLVVVDDIAKLWTT+LGSR IGAPEYCHANF+KYFTA FWSDKRF
Sbjct: 180 DLLEPCVKRVIYLDSDLVVVDDIAKLWTTNLGSRIIGAPEYCHANFTKYFTADFWSDKRF 239

Query: 241 SATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAG 300
           S TF GRKPCYFNTGV+VIDLVKWR  GYT+RIERWMEIQKS RIYELGSLP +LLVFAG
Sbjct: 240 SGTFRGRKPCYFNTGVMVIDLVKWRWAGYTKRIERWMEIQKSHRIYELGSLPSYLLVFAG 299

Query: 301 HVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAP 360
           HVAPIEHRWNQHGLGGDNVRGSCR+LHPGPVSLLHWSGSGKPWLRLDS++PCPLDALWAP
Sbjct: 300 HVAPIEHRWNQHGLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWLRLDSKQPCPLDALWAP 359

Query: 361 YDLYG 365
           YDLYG
Sbjct: 360 YDLYG 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128416|ref|XP_002320324.1| predicted protein [Populus trichocarpa] gi|222861097|gb|EEE98639.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436453|ref|XP_004136007.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Cucumis sativus] gi|449505333|ref|XP_004162438.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534929|ref|XP_003536003.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Glycine max] Back     alignment and taxonomy information
>gi|22331906|ref|NP_191825.2| putative galacturonosyltransferase-like 7 [Arabidopsis thaliana] gi|75161472|sp|Q8VYF4.1|GATL7_ARATH RecName: Full=Probable galacturonosyltransferase-like 7 gi|18175835|gb|AAL59936.1| unknown protein [Arabidopsis thaliana] gi|20465549|gb|AAM20257.1| unknown protein [Arabidopsis thaliana] gi|23397213|gb|AAN31889.1| unknown protein [Arabidopsis thaliana] gi|332646856|gb|AEE80377.1| putative galacturonosyltransferase-like 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356500226|ref|XP_003518934.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Glycine max] Back     alignment and taxonomy information
>gi|225437483|ref|XP_002274175.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|7362746|emb|CAB83116.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817602|ref|XP_002876684.1| hypothetical protein ARALYDRAFT_486764 [Arabidopsis lyrata subsp. lyrata] gi|297322522|gb|EFH52943.1| hypothetical protein ARALYDRAFT_486764 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449469050|ref|XP_004152234.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Cucumis sativus] gi|449515897|ref|XP_004164984.1| PREDICTED: probable galacturonosyltransferase-like 7-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2081670361 GATL7 "galacturonosyltransfera 0.972 0.991 0.825 2.2e-167
TAIR|locus:2024740361 GATL5 "galacturonosyltransfera 0.972 0.991 0.738 1.6e-148
TAIR|locus:2132218346 GATL6 "galacturonosyltransfera 0.929 0.988 0.737 6.5e-138
TAIR|locus:2020638390 LGT8 "glucosyl transferase fam 0.836 0.789 0.686 1.8e-119
TAIR|locus:2032357393 LGT9 [Arabidopsis thaliana (ta 0.836 0.783 0.650 3.1e-115
TAIR|locus:2205314345 GATL3 "galacturonosyltransfera 0.877 0.936 0.616 2.2e-112
TAIR|locus:2095420365 GATL10 "galacturonosyltransfer 0.932 0.939 0.581 2e-111
TAIR|locus:2082450351 GATL4 "galacturonosyltransfera 0.807 0.846 0.605 5.1e-106
TAIR|locus:2016432351 PARVUS "AT1G19300" [Arabidopsi 0.853 0.894 0.623 1.7e-105
TAIR|locus:2101724341 GATL2 "galacturonosyltransfera 0.817 0.882 0.601 4.7e-103
TAIR|locus:2081670 GATL7 "galacturonosyltransferase-like 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
 Identities = 302/366 (82%), Positives = 330/366 (90%)

Query:     1 MLWIMRLSGFFSAAMVMIVLSPSLQSFPPAEAIRSSHLDSYLRLPSKVSPIDASTRFSFR 60
             MLWIMR SG FSAA+V+IVLSPSLQSFPPAEAIRSSHLD+YLR PS   P     RFSFR
Sbjct:     1 MLWIMRFSGLFSAALVIIVLSPSLQSFPPAEAIRSSHLDAYLRFPSSDPP---PHRFSFR 57

Query:    61 KASVFRNADECGSTSYNVNGGGASVCDPSLVHVAITLDVEYLRGSIAAVHSILQHSTCPE 120
             KA VFRNA +C +   +++ G   VC+PSLVHVAITLD EYLRGSIAAVHSIL+HS+CPE
Sbjct:    58 KAPVFRNAADCAAA--DIDSG---VCNPSLVHVAITLDFEYLRGSIAAVHSILKHSSCPE 112

Query:   121 NIFFHFLVSDTNLETLVRSTFPQLKFKVYYFDPEIVRNLISTSVRQALEQPLNYARNYLA 180
             ++FFHFLVS+T+LE+L+RSTFP+LK KVYYFDPEIVR LISTSVRQALEQPLNYARNYLA
Sbjct:   113 SVFFHFLVSETDLESLIRSTFPELKLKVYYFDPEIVRTLISTSVRQALEQPLNYARNYLA 172

Query:   181 DLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRF 240
             DLLEPCVRRVIYLDSDL+VVDDIAKLW T LGS+TIGAPEYCHANF+KYFT  FWSD+RF
Sbjct:   173 DLLEPCVRRVIYLDSDLIVVDDIAKLWMTKLGSKTIGAPEYCHANFTKYFTPAFWSDERF 232

Query:   241 SATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAG 300
             S  F+GRKPCYFNTGV+V+DL +WRRVGYT  IE+WMEIQKSDRIYELGSLPPFLLVFAG
Sbjct:   233 SGAFSGRKPCYFNTGVMVMDLERWRRVGYTEVIEKWMEIQKSDRIYELGSLPPFLLVFAG 292

Query:   301 HVAPIEHRWNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAP 360
              VAPIEHRWNQHGLGGDNVRGSCR+LHPGPVSLLHWSGSGKPW RLDSRRPCPLD LWAP
Sbjct:   293 EVAPIEHRWNQHGLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWFRLDSRRPCPLDTLWAP 352

Query:   361 YDLYGH 366
             YDLYGH
Sbjct:   353 YDLYGH 358
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2024740 GATL5 "galacturonosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132218 GATL6 "galacturonosyltransferase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020638 LGT8 "glucosyl transferase family 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032357 LGT9 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205314 GATL3 "galacturonosyltransferase-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095420 GATL10 "galacturonosyltransferase-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082450 GATL4 "galacturonosyltransferase-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016432 PARVUS "AT1G19300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101724 GATL2 "galacturonosyltransferase-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04253GATL6_ARATH2, ., 4, ., 1, ., -0.76340.92930.9884nono
Q9FWY9GATL5_ARATH2, ., 4, ., 1, ., -0.73580.97280.9916nono
Q8VYF4GATL7_ARATH2, ., 4, ., 1, ., -0.81960.97280.9916yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 2e-69
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 9e-39
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 1e-27
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-24
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 9e-23
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 3e-22
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 2e-21
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 4e-21
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 1e-20
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 2e-20
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 5e-20
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 3e-19
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 2e-16
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 2e-14
cd06431280 cd06431, GT8_LARGE_C, LARGE catalytic domain has c 6e-05
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 4e-04
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 0.001
PRK15171334 PRK15171, PRK15171, lipopolysaccharide 1,3-galacto 0.002
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information 
 Score =  217 bits (556), Expect = 2e-69
 Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 16/260 (6%)

Query: 92  HVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFL---VSDTNLETLVRSTFPQLKF-K 147
            + + LD  Y+ G+   + S+L H++ P ++ FH L   VS+ N E L        +   
Sbjct: 1   VIVLALDDNYVLGAGVLIKSLLLHNSDPLHLLFHILTDDVSEENREKLNALGSQVSEVDV 60

Query: 148 VYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLW 207
           + + D E++  L    + +     LNYAR YLADL  P   +++YLD+D++V+ D+ +L+
Sbjct: 61  LEFSDIEMLSYLTLQLLLKKYWSLLNYARLYLADLF-PKYDKILYLDADIIVLGDLDELF 119

Query: 208 TTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRV 267
              LG +   A E              W  +  SA      PCYFN GV+VI+L KWR  
Sbjct: 120 DIDLGGKVAAAVEDF--------DRYPWFKEALSAELGIPPPCYFNAGVLVINLKKWREE 171

Query: 268 GYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNLH 327
             T ++  W+   K+  + +LG      +VF G V P+  R+N HGLG  +     R L 
Sbjct: 172 NLTEKLIEWL--NKNGGLLKLGDQDILNIVFKGKVKPLPPRYNVHGLGYYS-YKKRRKLI 228

Query: 328 PGPVSLLHWSGSGKPWLRLD 347
           P    ++H+ G  KPW  L 
Sbjct: 229 PENPKVIHYIGPTKPWHDLA 248

This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. Length = 248
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>gnl|CDD|185093 PRK15171, PRK15171, lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.97
PLN00176333 galactinol synthase 99.97
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.91
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.33
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 98.81
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.37
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 96.62
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 95.18
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 92.31
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 91.15
PF03414337 Glyco_transf_6: Glycosyltransferase family 6; Inte 89.59
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 88.04
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 85.96
PLN03181453 glycosyltransferase; Provisional 83.37
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information 
Probab=100.00  E-value=4.4e-50  Score=378.61  Aligned_cols=234  Identities=32%  Similarity=0.612  Sum_probs=193.6

Q ss_pred             eeEEEEeCccchHhHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHHHH----hhCCCcceEEEEeChhhhhhccchh---
Q 017643           91 VHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETLVR----STFPQLKFKVYYFDPEIVRNLISTS---  163 (368)
Q Consensus        91 i~I~~~~D~~yl~~~~v~i~Sil~~~~~~~~i~fhvl~~~~~~~~l~~----~~f~~l~i~~~~~d~~~~~~~is~~---  163 (368)
                      +|||+++| ||+ ++++++.|++.|++++++++|||++++.+.+.+.+    ....+.+++++.++...+.+.....   
T Consensus         1 ~hiv~~~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~   78 (257)
T cd06429           1 IHVVIFSD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLM   78 (257)
T ss_pred             CCEEEEec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhh
Confidence            69999999 999 68888899999998778999999999998655432    2233678999999876654432211   


Q ss_pred             -------------hhhhhcCchhhHHHhhhhhhccccCcEEEEecceeeecChHHHHhcccCCCeeeeeccccccccccc
Q 017643          164 -------------VRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYF  230 (368)
Q Consensus       164 -------------~~~~~~s~~~y~Rl~l~~llp~~v~RVLYLD~D~IV~~DI~eL~~~dl~g~~iaAv~d~~~~f~~~~  230 (368)
                                   .+..++++++|+||++|+++| +++||||||+|+||++||++||++|++|+++||++|         
T Consensus        79 ~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d---------  148 (257)
T cd06429          79 QLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---------  148 (257)
T ss_pred             hhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh---------
Confidence                         134578899999999999999 599999999999999999999999999999999763         


Q ss_pred             ccccccccccccccCCCCCcccccceEEEecHHHHHhhHHHHHHHHHHHccCC--CccCCCCchHHHHHhccCeeecccc
Q 017643          231 TATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSD--RIYELGSLPPFLLVFAGHVAPIEHR  308 (368)
Q Consensus       231 ~~~~w~~~~l~~~~~~~~~~yFNSGVmLidL~kwR~~~~~~ki~~~~~~~~~~--~l~~~~DQd~LN~vf~g~i~~L~~~  308 (368)
                                          ||||||||||+++||+.++++++++|++.+...  ..+.++|||+||++|.|+++.||++
T Consensus       149 --------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~~~~~L~~~  208 (257)
T cd06429         149 --------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYGLTSPLDPS  208 (257)
T ss_pred             --------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccCeeEECChH
Confidence                                899999999999999999999999999866542  3456789999999999999999999


Q ss_pred             cccccCCCCCcccccccCCCCCcEEEeCCCCCCCCccCCCCCCCchhHhhHhhh
Q 017643          309 WNQHGLGGDNVRGSCRNLHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYD  362 (368)
Q Consensus       309 wN~~~l~~~~~~~~~~~l~~~~~~IIHf~G~~KPW~~~~~~~~~~~~~lW~~Y~  362 (368)
                      ||+++++++....  .+ ...+++||||+|+.|||+..+.   .+++++||+|.
T Consensus       209 wN~~~l~~~~~~~--~~-~~~~~~IIHy~G~~KPW~~~~~---~~~~~~w~~yl  256 (257)
T cd06429         209 WHVRGLGYNYGIR--PQ-DIKAAAVLHFNGNMKPWLRTAI---PSYKELWEKYL  256 (257)
T ss_pred             HcccCCccccccc--cc-ccCCcEEEEECCCCCCcCCCCC---ChHHHHHHHHh
Confidence            9999777543211  11 1247899999999999998764   36899999996

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1ss9_A311 Crystal Structural Analysis Of Active Site Mutant Q 4e-08
1g9r_A311 Crystal Structure Of Galactosyltransferase Lgtc In 5e-08
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 35/189 (18%)
Query: 174 YARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSK----Y 229
           YAR  L + +  C  +V+YLD D++V D +  LW T LG   +GA   C   F +    Y
Sbjct: 84  YARLKLGEYIADC-DKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---CIDLFVERQEGY 139
Query: 230 FTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELG 289
                 +D  +          YFN GV++I+L KWRR    +    W+E  K    Y+  
Sbjct: 140 KQKIGMADGEY----------YFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDE 189
Query: 290 SLPPFLLVFAGHVAPIEHRWN----QHGLGGDNVRGSCRNLHP---------GPVSLLHW 336
            +   L  F G V     R+N     +    +  R + R+  P          PV++ H+
Sbjct: 190 DILNGL--FKGGVCYANSRFNFMPTNYAFMAN--RFASRHTDPLYRDRTNTVMPVAVSHY 245
Query: 337 SGSGKPWLR 345
            G  KPW R
Sbjct: 246 CGPAKPWHR 254
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 4e-62
3tzt_A276 Glycosyl transferase family 8; structural genomics 7e-49
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 3e-04
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  200 bits (511), Expect = 4e-62
 Identities = 61/271 (22%), Positives = 95/271 (35%), Gaps = 33/271 (12%)

Query: 91  VHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFL---VSDTNLETLVRSTFP-QLKF 146
           + +    D  Y      A  S+         I FH L   +S+ N   +  +        
Sbjct: 1   MDIVFAADDNYAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEANRAAVAANLRGGGGNI 59

Query: 147 KVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKL 206
           +    +PE         +         YAR  L + +     +V+YLD D++V D +  L
Sbjct: 60  RFIDVNPEDFAGF---PLNIRHISITTYARLKLGEYI-ADCDKVLYLDIDVLVRDSLTPL 115

Query: 207 WTTSLGSRTIGA-PEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWR 265
           W T LG   +GA  +        Y      +D             YFN GV++I+L KWR
Sbjct: 116 WDTDLGDNWLGASIDLFVERQEGYKQKIGMADGE----------YYFNAGVLLINLKKWR 165

Query: 266 RVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRN 325
           R    +    W+E  K    Y+   +     +F G V     R+N        +     +
Sbjct: 166 RHDIFKMSSEWVEQYKDVMQYQDQDILNG--LFKGGVCYANSRFNFMPTNYAFMANWFAS 223

Query: 326 LHPGP-----------VSLLHWSGSGKPWLR 345
            H  P           V++ H+ G  KPW R
Sbjct: 224 RHTDPLYRDRTNTVMPVAVSHYCGPAKPWHR 254
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.97
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.96
1o7q_A289 N-acetyllactosaminide alpha-1,3- galactosyltransfe 88.04
3ioh_A298 Histo-blood group ABO system transferase; GTA, cis 85.42
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=1.1e-48  Score=372.30  Aligned_cols=256  Identities=16%  Similarity=0.242  Sum_probs=182.4

Q ss_pred             CceeEEEEeCccchHhHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHH--HHhh--CCCcceEEEEeChhhhhhccchhh
Q 017643           89 SLVHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETL--VRST--FPQLKFKVYYFDPEIVRNLISTSV  164 (368)
Q Consensus        89 ~~i~I~~~~D~~yl~~~~v~i~Sil~~~~~~~~i~fhvl~~~~~~~~l--~~~~--f~~l~i~~~~~d~~~~~~~is~~~  164 (368)
                      ..|||++|+|++|+++++|+++||++|+++ ++++|||++++++.+..  +++.  -.+.+++++.++.+.+++...   
T Consensus         4 m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~---   79 (276)
T 3tzt_A            4 MADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKV---   79 (276)
T ss_dssp             -CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC------------
T ss_pred             eeEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCcc---
Confidence            469999999999999999999999999985 68999999999875432  2221  124578888888765554322   


Q ss_pred             hhhhcCchhhHHHhhhhhhccccCcEEEEecceeeecChHHHHhcccCCCeeeeecccccc-cccccccccccccccccc
Q 017643          165 RQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHAN-FSKYFTATFWSDKRFSAT  243 (368)
Q Consensus       165 ~~~~~s~~~y~Rl~l~~llp~~v~RVLYLD~D~IV~~DI~eL~~~dl~g~~iaAv~d~~~~-f~~~~~~~~w~~~~l~~~  243 (368)
                       ..+.++.+|+||++|+++|++++||||||+|+||++||++||++|++|+.+||++||... +.+.    .+   ..+  
T Consensus        80 -~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~----~~---~~~--  149 (276)
T 3tzt_A           80 -TDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANN----VN---RIR--  149 (276)
T ss_dssp             -----CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------------
T ss_pred             -ccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHH----HH---Hhc--
Confidence             235678999999999999977999999999999999999999999999999999988542 1111    11   111  


Q ss_pred             cCCCCCcccccceEEEecHHHHHhhHHHHHHHHHHHccCCCccCCCCchHHHHHhccCeeeccc-ccccccCCCCCc---
Q 017643          244 FNGRKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEH-RWNQHGLGGDNV---  319 (368)
Q Consensus       244 ~~~~~~~yFNSGVmLidL~kwR~~~~~~ki~~~~~~~~~~~l~~~~DQd~LN~vf~g~i~~L~~-~wN~~~l~~~~~---  319 (368)
                      + +...+||||||||||+++||+.+++++++++++.++. ++ .++|||+||.+|.|+++.||+ +||++. ++...   
T Consensus       150 l-~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~-~~-~~~DQd~LN~~f~~~~~~Lp~~~wN~~~-~~~~~~~~  225 (276)
T 3tzt_A          150 L-GTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHM-NL-LLPDQDILNAMYGDRIYPLDDLIYNYDA-RNYSSYLI  225 (276)
T ss_dssp             -------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEEEHHHHSEET-TCHHHHHH
T ss_pred             C-CCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccc-cc-cCCChhHHHHHHhCCEEECCchheeeec-ccchhhhc
Confidence            1 1234899999999999999999999999999986543 22 368999999999999999999 999985 22110   


Q ss_pred             ccc-cccC--CCCCcEEEeCCCCCCCCccCCCCCCCchhHhhHhhhhcC
Q 017643          320 RGS-CRNL--HPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYG  365 (368)
Q Consensus       320 ~~~-~~~l--~~~~~~IIHf~G~~KPW~~~~~~~~~~~~~lW~~Y~~~~  365 (368)
                      ... ..+.  ...+++||||+|+.|||+.....   +++++||+|.++.
T Consensus       226 ~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~---~~~~~w~~Y~~~~  271 (276)
T 3tzt_A          226 RSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRN---KFTSLYKHYMSLT  271 (276)
T ss_dssp             HTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCS---TTHHHHHHHHHHH
T ss_pred             cccchhhhhhhccCCeEEEECCCCCCcCCCCCC---chHHHHHHHHHHH
Confidence            000 0000  11357999999999999988653   5999999998764
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ... Back     alignment and structure
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 1e-32
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 2e-10
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  121 bits (303), Expect = 1e-32
 Identities = 61/273 (22%), Positives = 94/273 (34%), Gaps = 31/273 (11%)

Query: 91  VHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFL---VSDTNLETLVRST-FPQLKF 146
           + +    D  Y      A  S+         I FH L   +S+ N   +  +        
Sbjct: 1   MDIVFAADDNYAAYLCVAAKSVEAAHP-DTEIRFHVLDAGISEANRAAVAANLRGGGGNI 59

Query: 147 KVYYFDPEIVRNLISTSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKL 206
           +    +PE                   YAR  L +       +V+YLD D++V D +  L
Sbjct: 60  RFIDVNPEDFAGFPLNIRHI---SITTYARLKLGEY-IADCDKVLYLDIDVLVRDSLTPL 115

Query: 207 WTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNGRKPCYFNTGVVVIDLVKWRR 266
           W T LG   +GA         + +       K+     +G    YFN GV++I+L KWRR
Sbjct: 116 WDTDLGDNWLGASIDLFVERQEGY-------KQKIGMADGE--YYFNAGVLLINLKKWRR 166

Query: 267 VGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNVRGSCRNL 326
               +    W+E  K    Y          +F G V     R+N        +     + 
Sbjct: 167 HDIFKMSSEWVEQYKDVMQY--QDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASR 224

Query: 327 HP-----------GPVSLLHWSGSGKPWLRLDS 348
           H             PV++ H+ G  KPW R  +
Sbjct: 225 HTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCT 257
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.96
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 96.35
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 96.11
d1xhba2328 Polypeptide N-acetylgalactosaminyltransferase 1, N 89.23
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=1.3e-45  Score=348.25  Aligned_cols=256  Identities=22%  Similarity=0.299  Sum_probs=195.1

Q ss_pred             eeEEEEeCccchHhHHHHHHHHHhhcCCCCcEEEEEEeCCCCHHHH--HHhhC--CCcceEEEEeChhhhhhccchhhhh
Q 017643           91 VHVAITLDVEYLRGSIAAVHSILQHSTCPENIFFHFLVSDTNLETL--VRSTF--PQLKFKVYYFDPEIVRNLISTSVRQ  166 (368)
Q Consensus        91 i~I~~~~D~~yl~~~~v~i~Sil~~~~~~~~i~fhvl~~~~~~~~l--~~~~f--~~l~i~~~~~d~~~~~~~is~~~~~  166 (368)
                      ||||+|+|++|+.+++|+++||++|++. ++++||+++++.+.+..  +++..  ...+++++.++...+......   .
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~---~   76 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLN---I   76 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSCCC---C
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhcccccc---c
Confidence            7999999999999999999999998874 68999999999875532  32222  234788888887665543211   2


Q ss_pred             hhcCchhhHHHhhhhhhccccCcEEEEecceeeecChHHHHhcccCCCeeeeecccccccccccccccccccccccccCC
Q 017643          167 ALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDIAKLWTTSLGSRTIGAPEYCHANFSKYFTATFWSDKRFSATFNG  246 (368)
Q Consensus       167 ~~~s~~~y~Rl~l~~llp~~v~RVLYLD~D~IV~~DI~eL~~~dl~g~~iaAv~d~~~~f~~~~~~~~w~~~~l~~~~~~  246 (368)
                      .+.++++|+||+++++||+ ++||||||+|+||++||++||+++++++.+||+.|+......     .|. ...+  + .
T Consensus        77 ~~~s~~~y~Rl~l~~~lp~-~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~-----~~~-~~~~--~-~  146 (282)
T d1ga8a_          77 RHISITTYARLKLGEYIAD-CDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQE-----GYK-QKIG--M-A  146 (282)
T ss_dssp             TTCCGGGGGGGGHHHHCCS-CSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTST-----THH-HHTT--C-C
T ss_pred             cccCHHHHHHHHHhhhCCc-cceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhh-----hhH-HHhC--C-C
Confidence            3567899999999999994 999999999999999999999999999999998876432111     011 1111  1 2


Q ss_pred             CCCcccccceEEEecHHHHHhhHHHHHHHHHHHccCCCccCCCCchHHHHHhccCeeecccccccccCCCCCc----cc-
Q 017643          247 RKPCYFNTGVVVIDLVKWRRVGYTRRIERWMEIQKSDRIYELGSLPPFLLVFAGHVAPIEHRWNQHGLGGDNV----RG-  321 (368)
Q Consensus       247 ~~~~yFNSGVmLidL~kwR~~~~~~ki~~~~~~~~~~~l~~~~DQd~LN~vf~g~i~~L~~~wN~~~l~~~~~----~~-  321 (368)
                      .+.+||||||||+|+++||+.+++++++++++.+...  ...+||++||.+|+|++..||.+||++..++...    .. 
T Consensus       147 ~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~  224 (282)
T d1ga8a_         147 DGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDV--MQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMANWFASR  224 (282)
T ss_dssp             TTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTT--CSSTHHHHHHHHHTTSEEEECGGGSBCHHHHHTCC----CS
T ss_pred             CCCceeecceeeechhhhhhhhHHHHHHHHHHhcccC--cccCchhHHHHHhcCCEEeCCHHHeeccccccccccccccc
Confidence            4578999999999999999999999999999865432  2468999999999999999999999874221100    00 


Q ss_pred             ----cccc--CCCCCcEEEeCCCCCCCCccCCCCCCCchhHhhHhhhhcC
Q 017643          322 ----SCRN--LHPGPVSLLHWSGSGKPWLRLDSRRPCPLDALWAPYDLYG  365 (368)
Q Consensus       322 ----~~~~--l~~~~~~IIHf~G~~KPW~~~~~~~~~~~~~lW~~Y~~~~  365 (368)
                          ..++  ....+++||||+|+.|||++....   ++.+.|++|....
T Consensus       225 ~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~---~~~~~~~~~~~~~  271 (282)
T d1ga8a_         225 HTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTA---WGAERFTELAGSL  271 (282)
T ss_dssp             CCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCS---TTTHHHHHHHTTC
T ss_pred             cchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCC---hhHHHHHHHHHhh
Confidence                0001  112568999999999999987653   4778899888754
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure