Citrus Sinensis ID: 017649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccEEEEEcccccccEEEEccccccccccccccEEEEEEccEEEEEEccccccccEEEEccccccccHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEcccccccEEEEEcccEEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHcEEEcccHHHccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLKLYLRRKlqndnvipstttdNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTicnselrplgtglypVISIinhsclpnavlVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYlftctcprciklgqfddiQESAIlegyrckddgcsgfllrdsddkgftcqqcglvrsKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLtipvyqrvypqfhpllglqyytcgklewflGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Flexible Loop (DISEMBL)
MLKLYLRRklqndnvipstttdNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLlrdsddkgftCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAqaeasyklsskde
Low Complexity Region (SEG)
MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Disordered region (IsUnstruct)
*****L***LQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL****************
Disordered Region (DISOPRED)
MLKLYLRRKLQNDN***STTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE********K******
Disordered Region (DISEMBL)
MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA*************
Disordered Region (DISPRO)
MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q7XJS0	480	Histone-lysine N-methyltr	yes	no	0.983	0.754	0.651	1e-144
Q9H7B4	428	Histone-lysine N-methyltr	no	no	0.635	0.546	0.303	2e-26
Q9CWR2	428	Histone-lysine N-methyltr	yes	no	0.641	0.551	0.287	2e-26
Q0P585	433	N-lysine methyltransferas	yes	no	0.864	0.734	0.255	4e-26
Q8R5A0	433	N-lysine methyltransferas	no	no	0.858	0.729	0.236	4e-26
Q7M6Z3	433	N-lysine methyltransferas	no	no	0.828	0.704	0.235	6e-26
Q9NRG4	433	N-lysine methyltransferas	no	no	0.858	0.729	0.256	1e-25
C3RZA1	433	N-lysine methyltransferas	no	no	0.858	0.729	0.253	1e-25
E1C5V0	436	N-lysine methyltransferas	no	no	0.866	0.731	0.231	6e-25
Q5BJI7	435	N-lysine methyltransferas	yes	no	0.869	0.735	0.243	2e-23

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/362 (65%), Positives = 302/362 (83%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEKQ+LLYAQ+ANLVNLILQ+P 
Sbjct: 114 MVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPS 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA
Sbjct: 174 VDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRA 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           + ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C RC   G+  DI+ESAILEGYR
Sbjct: 234 MDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           C ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K     S  + Q  +
Sbjct: 294 CANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAPTSPSAEDKQAAI 353

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
             YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+EAL YC+L +PVYQRVYP  H
Sbjct: 354 ELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWREALNYCRLIVPVYQRVYPATH 413

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG ++PFMKEL  KLEEA+AEAS
Sbjct: 414 PLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGISTPFMKELSAKLEEARAEAS 473

Query: 361 YK 362
           YK
Sbjct: 474 YK 475

Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)

Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229

Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 266

Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 267 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 317

Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct: 318 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 368

Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 369 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 136/275 (49%), Gaps = 39/275 (14%)

Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP +S++NHSC PN  +VF G   ++RAV+ +
Sbjct: 170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREI 229

Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC    Q  D               
Sbjct: 230 EAGEELTICYLDMLMTSEERRKQLRDQYCFECDCIRC----QTQD--------------- 270

Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D+D          ++   E+I K   EV    KK   L +    ++V++  +
Sbjct: 271 -------KDAD----------MLTGDEQIWK---EVQESLKKIEELKAHWKWEQVLALCQ 310

Query: 245 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304
            I           ++  ++  +  +   + L   +EAL Y   T+  Y+  +P  HP+ G
Sbjct: 311 AIINSNSNRLPDINIYQLKVLDCAMDACINLGMLEEALFYAMRTMEPYRIFFPGSHPVRG 370

Query: 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
           +Q    GKL+   G    A+K++  A +I+++THG
Sbjct: 371 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMKVTHG 405

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0P585|SMYD2_BOVIN N-lysine methyltransferase SMYD2 OS=Bos taurus GN=SMYD2 PE=2 SV=1

 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 31/349 (8%)

Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLILQWPEISINE 65
           R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +   +  E   N+
Sbjct: 111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDND 170

Query: 66  -IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
            +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +
Sbjct: 171 SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEI 230

Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G EV  SYI+    T  R   L++ Y FTC C  C         ++ A +E  R  +D
Sbjct: 231 HPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD-----KDKAKVE-IRKLND 284

Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                 +RD            +VR    + +           +  L  C   QE +S   
Sbjct: 285 PPKAETIRD------------MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSC-- 330

Query: 245 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304
                   ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   + 
Sbjct: 331 --------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKHYPLYSLNVA 382

Query: 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
             +   G+L   L +     +++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 383 SMWLKLGRLYMGLENKAAGERALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q8R5A0|SMYD2_MOUSE N-lysine methyltransferase SMYD2 OS=Mus musculus GN=Smyd2 PE=1 SV=1

 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 158/351 (45%), Gaps = 35/351 (9%)

Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
           R L    + P  T     L V    +H+  +D EK+ L+ + IA L       L++P+ S
Sbjct: 111 RILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS 170

Query: 63  INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
              +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 171 --SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            +  G EV  SYI+    T  R   L++ Y FTC C  C                     
Sbjct: 229 EIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECT-------------------- 268

Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
                    +D D      ++       E I+ +      + ++        +  E++  
Sbjct: 269 --------TKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEI 320

Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
            ++ ++    ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 321 CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380

Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
           +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7M6Z3|SMYD2_RAT N-lysine methyltransferase SMYD2 OS=Rattus norvegicus GN=Smyd2 PE=2 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 155/339 (45%), Gaps = 34/339 (10%)

Query: 19  TTTDNYSLVEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLA 74
           T ++    V    +H+  +D EK+ L+ + IA L       L++P+ S   +   F+++ 
Sbjct: 123 TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVN 180

Query: 75  CNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISY 134
           CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SY
Sbjct: 181 CNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSY 240

Query: 135 IETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDS 194
           I+    T  R   L++ Y FTC C  C                              +D 
Sbjct: 241 IDLLYPTEDRNDRLRDSYFFTCECRECT----------------------------TKDK 272

Query: 195 DDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 254
           D      ++       E I+ +      + ++        +  E++   ++ ++    ++
Sbjct: 273 DKAKVEIRKLSNPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVF 332

Query: 255 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 314
              +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L 
Sbjct: 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392

Query: 315 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
             L +     K++ +A+ I+ I HG + P++ E+  ++E
Sbjct: 393 MGLENKAAGEKALKKAIAIMEIAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 35/351 (9%)

Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
           R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +     L +P+  
Sbjct: 111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDN- 169

Query: 63  INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
            + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 170 -DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            +  G EV  SYI+    T  R   L++ Y FTC C  C         ++ A +E  R  
Sbjct: 229 EIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD-----KDKAKVE-IRKL 282

Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
            D      +RD            +VR    + +           +  L  C   QE +S+
Sbjct: 283 SDPPKAEAIRD------------MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSS 330

Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
                     ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 331 ----------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLN 380

Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
           +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 381 VASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|C3RZA1|SMYD2_PIG N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=SMYD2 PE=2 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 163/351 (46%), Gaps = 35/351 (9%)

Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
           R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +     L++P+  
Sbjct: 111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDS- 169

Query: 63  INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
            + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 170 -DSLVVLFAQVNCNGFTIEDEELSHLGSXIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            +  G EV  SYI+    T  R   L++ Y FTC C  C         ++ A +E  R  
Sbjct: 229 EIHPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD-----KDKAKVE-IRKL 282

Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
           +D      +RD            +VR    + +           +  L  C   QE +S 
Sbjct: 283 NDPPKAEAIRD------------MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSC 330

Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
                     ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 331 ----------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKHYPLYSLN 380

Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
           +   +   G+L   L +     +++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 381 VASMWLKLGRLYMGLENKAAGERALRKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|E1C5V0|SMYD2_CHICK N-lysine methyltransferase SMYD2 OS=Gallus gallus GN=SMYD2 PE=3 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 157/350 (44%), Gaps = 31/350 (8%)

Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLILQWPEISINE 65
           R L    + P  T     L V+   +H+  +D EK+ L+   IA L +   +  E   N 
Sbjct: 114 RILAKQKIHPERTQSEKLLAVKEFESHLDKLDNEKRELIQNDIAALHHFYSKHMEYPDNA 173

Query: 66  -IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
            +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAV+ +
Sbjct: 174 ALVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVKEI 233

Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G EV  SYI+    T  R   L++ Y FTC C  C                       
Sbjct: 234 EPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCDCRECT---------------------- 271

Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                 +++ D +    ++     S E ++ +      + ++           E++   +
Sbjct: 272 ------MKEKDKEKLKIRKLNDPPSAEAVRDMIKYARNVIEEFRRAKHYKPPSELLEICE 325

Query: 245 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304
           +       ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   + 
Sbjct: 326 LSLDKMGAVFEDSNVYMLHMMYQAMGVCLYVQDWEGALRYGQKIIRPYSKHYPSYSLNVA 385

Query: 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 354
             +   G+L   L +     K++ +A+ I+ + HG + P++ E+  +LE+
Sbjct: 386 SMWLKLGRLYMALENRPAGDKALKKAIAIMEVAHGKDHPYISEIKKELED 435

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q5BJI7|SMY2A_DANRE N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 164/361 (45%), Gaps = 41/361 (11%)

Query: 2   LKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID-EKQLLLYAQIANLVNLI---LQ 57
           ++L  R  L+  +    T ++    +  L AH+  +D EK  +    IA L +     L 
Sbjct: 106 VRLVARIILKQKHQTERTPSERVLTLRELEAHLDKLDNEKNEMNDTDIAALHHFYSRHLD 165

Query: 58  WPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAV 117
           +P+ +   + E  +++ CN  TI + EL  LG+ L+P ++++NHSC PN ++ ++G +A 
Sbjct: 166 FPDNAA--LTELIAQVNCNGFTIEDEELSHLGSALFPDVALMNHSCSPNVIVTYKGTVAE 223

Query: 118 VRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILE 177
           VRAVQ +    E+  SYI+    T  R + LK+ Y F C C  C                
Sbjct: 224 VRAVQEINPEEEIFNSYIDLLYPTEDRIERLKDSYFFNCDCKECTS-------------- 269

Query: 178 GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQ 237
             + KD+            K    Q+  +   +EEIK++     I ++  +       H 
Sbjct: 270 --KSKDEA-----------KMEIRQKLSIPPEEEEIKQMV----IYARNVIEEFRRAKHY 312

Query: 238 EVVSTYKMIEKLQKK----LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 293
           +  S    I +L  +    ++   +V ++    + + + + ++DW  A+ Y +  I  Y 
Sbjct: 313 KTPSELLEICELSMEKMGAIFAETNVYMLHMMYQAMGVCLYMQDWDGAMKYGEKIIHPYS 372

Query: 294 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
             YP +   +   Y   G+L   L      +K++ +A+ I+ I HG + P++ E+  ++E
Sbjct: 373 VHYPPYSLNVASMYLKLGRLYLGLEKRTQGVKALKKALAIMDIAHGKDHPYIDEIKKEME 432

Query: 354 E 354
           E
Sbjct: 433 E 433

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
302141868	480	unnamed protein product [Vitis vinifera]	0.997	0.764	0.769	1e-174
255545512	482	protein with unknown function [Ricinus c	0.997	0.761	0.771	1e-173
225459467	477	PREDICTED: histone-lysine N-methyltransf	0.989	0.763	0.766	1e-172
356507670	484	PREDICTED: histone-lysine N-methyltransf	0.967	0.735	0.745	1e-160
449445136	482	PREDICTED: histone-lysine N-methyltransf	1.0	0.763	0.722	1e-159
224082230	458	SET domain protein [Populus trichocarpa]	0.937	0.753	0.722	1e-156
356518519	401	PREDICTED: LOW QUALITY PROTEIN: histone-	0.961	0.882	0.722	1e-154
357461631	511	Histone-lysine N-methyltransferase ASHR1	0.978	0.704	0.658	1e-152
297836508	483	hypothetical protein ARALYDRAFT_319740 [	0.989	0.753	0.662	1e-145
30680137	480	histone-lysine N-methyltransferase ASHR1	0.983	0.754	0.651	1e-143

>gi|302141868|emb|CBI19071.3| unnamed protein product [Vitis vinifera]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 283/368 (76%), Positives = 335/368 (91%), Gaps = 1/368 (0%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M+KLY+RRKLQ++ ++P+T  DNY+LVEALV+H++DIDEKQL+LYAQ+ANLVNLILQWP+
Sbjct: 114 MVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEKQLVLYAQMANLVNLILQWPD 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIINHSCLPN+VLVFE RLAVVRA
Sbjct: 174 INVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEERLAVVRA 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           VQH+PKG EVLISYIETAGST+TRQKALKEQYLFTCTCPRC ++GQ+DDIQESAILEGYR
Sbjct: 234 VQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPRCRRMGQYDDIQESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           CKDD C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+  LS K   ++S  ++ E  
Sbjct: 294 CKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASELKPLSDKA-TMSSSSHYVEAT 352

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
           S YKMIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ AL YC+LTIPVYQRVYP FH
Sbjct: 353 SIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRAALTYCKLTIPVYQRVYPGFH 412

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PLLGLQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGTN+PFMKEL+ KLEEA+AEAS
Sbjct: 413 PLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGTNTPFMKELLFKLEEARAEAS 472

Query: 361 YKLSSKDE 368
           +K SSKD+
Sbjct: 473 HKRSSKDK 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545512|ref|XP_002513816.1| protein with unknown function [Ricinus communis] gi|223546902|gb|EEF48399.1| protein with unknown function [Ricinus communis]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 283/367 (77%), Positives = 329/367 (89%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M++L +RRKLQ++ +I ST TDNY LVEALVAHM DIDEKQL+LYAQ+ANLVNLIL+WP+
Sbjct: 114 MVRLLIRRKLQSEKIISSTATDNYDLVEALVAHMKDIDEKQLVLYAQMANLVNLILRWPD 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           ++I EIAENFSKLACNAHTIC+SELRPLGTGLYPV+SIINHSCLPNAVLVF+GRLAVV  
Sbjct: 174 VNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVVSIINHSCLPNAVLVFDGRLAVVHT 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           VQH+PKG+EVLISYIETAGSTMTRQKALK+QY FTCTCPRCIK+G  DDIQESAILEGYR
Sbjct: 234 VQHIPKGSEVLISYIETAGSTMTRQKALKQQYFFTCTCPRCIKMGLLDDIQESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           CKD+ C+GFLLRDSDD+GF CQQCGL+RSKEE+KK A+E+   S K     S GN QE V
Sbjct: 294 CKDNRCNGFLLRDSDDRGFICQQCGLLRSKEEVKKSAAEIKATSDKASKSISSGNLQEAV 353

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
           S YK+IEKLQ+KL HPFS +LMQTREKL+K+LMELEDW EAL+YC+LTIPVYQRVYP+FH
Sbjct: 354 SIYKLIEKLQRKLCHPFSTSLMQTREKLLKMLMELEDWGEALSYCKLTIPVYQRVYPEFH 413

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PLLGLQY++CGKLEW LGDTE AIKS+T+A+++LRITHGT +PFMKEL++KLEEA+AE S
Sbjct: 414 PLLGLQYFSCGKLEWLLGDTEAAIKSLTKALDVLRITHGTKTPFMKELMMKLEEARAEVS 473

Query: 361 YKLSSKD 367
           Y  +S D
Sbjct: 474 YLRASND 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459467|ref|XP_002284386.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Vitis vinifera]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 282/368 (76%), Positives = 332/368 (90%), Gaps = 4/368 (1%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M+KLY+RRKLQ++ ++P+T  DNY+LVEALV+H++DIDEKQL+LYAQ+ANLVNLILQWP+
Sbjct: 114 MVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEKQLVLYAQMANLVNLILQWPD 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIINHSCLPN+VLVFE RLAVVRA
Sbjct: 174 INVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEERLAVVRA 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           VQH+PKG EVLISYIETAGST+TRQKALKEQYLFTCTCPRC ++GQ+DDIQESAILEGYR
Sbjct: 234 VQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPRCRRMGQYDDIQESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           CKDD C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+  LS K    +S     +  
Sbjct: 294 CKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASELKPLSDKATMSSS----SQAT 349

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
           S YKMIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ AL YC+LTIPVYQRVYP FH
Sbjct: 350 SIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRAALTYCKLTIPVYQRVYPGFH 409

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PLLGLQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGTN+PFMKEL+ KLEEA+AEAS
Sbjct: 410 PLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGTNTPFMKELLFKLEEARAEAS 469

Query: 361 YKLSSKDE 368
           +K SSKD+
Sbjct: 470 HKRSSKDK 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507670|ref|XP_003522587.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Glycine max]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/357 (74%), Positives = 309/357 (86%), Gaps = 1/357 (0%)

Query: 11  QNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENF 70
           QND +IPST  DNY+LVEALVAHMSDI E+QL+LYAQ+ANLVN IL+WP I+I EIAENF
Sbjct: 129 QNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILEWPGINIKEIAENF 188

Query: 71  SKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEV 130
           SK ACNAHTIC+SELRP+GTGLYPVISIINHSCLPN+VLVFEG  A+VRAVQH+P G EV
Sbjct: 189 SKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEV 248

Query: 131 LISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFL 190
           LISYIETA STMTRQKALKEQYLFTCTCPRC K+GQ+DDIQESAILEGY+CK + C GFL
Sbjct: 249 LISYIETAESTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFL 308

Query: 191 LRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 250
           LR +D KGF CQ CGL+R KEEIK+I +E+ +LS+   +  S   +QE +S YK IEKLQ
Sbjct: 309 LRTTDGKGFQCQGCGLIRDKEEIKRITTEIKLLSEDA-SKPSATYYQEAISIYKRIEKLQ 367

Query: 251 KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 310
            +L+HP S+NLM TREK++K LMELE W EALAYC+LTIP YQRVYP  HPL GLQYYTC
Sbjct: 368 TELFHPLSINLMHTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTC 427

Query: 311 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKD 367
           GKLEW+LGDTE A+KS+T+AV+ILRITHGTN+PFMK+L++KLEEA+ EASYK SSK+
Sbjct: 428 GKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARTEASYKFSSKE 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445136|ref|XP_004140329.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus] gi|449502473|ref|XP_004161650.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/368 (72%), Positives = 313/368 (85%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M+KL++RRKLQ++ VIP   TDNY LVE L+ HMS IDEKQL+LYAQ+  LVN ILQWP 
Sbjct: 114 MIKLFIRRKLQSEKVIPMAATDNYKLVEELIDHMSGIDEKQLVLYAQMGTLVNFILQWPG 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           +++ EIA NFSKLACNAHTIC+SELRPLGTGLYPVISIINHSCLPNAVLVFEGR AVVRA
Sbjct: 174 MNVKEIAVNFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRTAVVRA 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           VQH+P GAEV ISYIETAGSTMTRQK LKE YLFTCTC RC+K+ Q D+I+ESAILEGYR
Sbjct: 234 VQHIPAGAEVSISYIETAGSTMTRQKTLKENYLFTCTCSRCVKVAQEDEIKESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           C++D C GFLLR+SDD GFTCQQCGLVRSKE+IK IAS++  +S +     S  ++ E +
Sbjct: 294 CRNDQCDGFLLRNSDDTGFTCQQCGLVRSKEDIKNIASKIKSISDEASTSLSSQSYAEAL 353

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
             Y+ +EKLQ+ L HP+S++LMQTREKL+KI MELE+W +AL YC+LTI VYQ++YP  H
Sbjct: 354 FMYEKVEKLQRILCHPYSISLMQTREKLLKISMELENWTKALTYCKLTISVYQKLYPGIH 413

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PLLGLQ+YTCGKLEW LG TE+AIKS T+A +ILRITHGTNS FMKEL+LKLEEA+AEAS
Sbjct: 414 PLLGLQFYTCGKLEWLLGHTEDAIKSYTKAFDILRITHGTNSSFMKELLLKLEEARAEAS 473

Query: 361 YKLSSKDE 368
           YKLSS D+
Sbjct: 474 YKLSSTDD 481

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082230|ref|XP_002306611.1| SET domain protein [Populus trichocarpa] gi|222856060|gb|EEE93607.1| SET domain protein [Populus trichocarpa]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/368 (72%), Positives = 312/368 (84%), Gaps = 23/368 (6%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M++LYLRRKLQN+                      D+DEKQL+LYAQ+ANLV+ ILQWPE
Sbjct: 114 MVRLYLRRKLQNE---------------------MDLDEKQLVLYAQMANLVHFILQWPE 152

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPV+SIINHSC+PNAVL FEG+ +VVRA
Sbjct: 153 INLKEIAENFSKLACNAHTICDCELRPLGTGLYPVVSIINHSCMPNAVLTFEGKSSVVRA 212

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           V+H+P+GAEV I+YI+TAGSTMTRQKALKEQY FTCTCPRCIK+  +DDIQESAILEGYR
Sbjct: 213 VEHIPEGAEVSIAYIDTAGSTMTRQKALKEQYFFTCTCPRCIKV--YDDIQESAILEGYR 270

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           CKDD C+GFLLRDS+DKGF CQ CGL RSKEE+K+I  E+  +S K L  TS GNH+EV+
Sbjct: 271 CKDDRCNGFLLRDSEDKGFICQTCGLRRSKEEVKRIVCEITAISDKKLKSTSPGNHEEVI 330

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
           S YKMIEKLQ +L HPFS++LM+T+E+L+KILMEL DW+EALAYC+LTI  YQRVYP+ H
Sbjct: 331 SLYKMIEKLQMELCHPFSISLMRTQEELLKILMELGDWREALAYCRLTITGYQRVYPEPH 390

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PLLGLQYYTCGK+EW LG TE+AIKS+T AV+ILRITHGTNSPFMKEL++KL+EA AEAS
Sbjct: 391 PLLGLQYYTCGKIEWLLGYTEDAIKSLTRAVDILRITHGTNSPFMKELMMKLDEAHAEAS 450

Query: 361 YKLSSKDE 368
           Y LSSKDE
Sbjct: 451 YNLSSKDE 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518519|ref|XP_003527926.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ASHR1-like [Glycine max]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/357 (72%), Positives = 305/357 (85%), Gaps = 3/357 (0%)

Query: 11  QNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENF 70
           QND ++PST  DNY+LVEALVA+MSDI E+QL+LYA++ANLVN ILQWPEI+I EIAENF
Sbjct: 48  QNDKIVPSTAMDNYNLVEALVAYMSDITEEQLVLYAKMANLVNSILQWPEINIKEIAENF 107

Query: 71  SKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEV 130
           SK ACNAHTIC+SELRP+GTGLYPVISIINHSCLPN+VLVFEGR A+V  VQH+P G EV
Sbjct: 108 SKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVPTVQHIPTGTEV 167

Query: 131 LISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFL 190
            ISYIETAGSTMT+Q ALK    FTCTCPRC K+G++DDIQESAILEGY+CK + C GFL
Sbjct: 168 PISYIETAGSTMTQQNALKSSTXFTCTCPRCSKVGEYDDIQESAILEGYKCKSEKCGGFL 227

Query: 191 LRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 250
           L     KGF CQ CGLVR KEEIK+I +E+ +LS++ +  +S  N+QE +S YK IEKLQ
Sbjct: 228 LY---GKGFQCQGCGLVRDKEEIKRITTEIKLLSEEKIISSSTCNYQEAISIYKWIEKLQ 284

Query: 251 KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 310
            +LYHP SVNLMQ REK++K LMELE W EALAYC+LTIP YQRVYP  HPLLGLQYYTC
Sbjct: 285 TELYHPLSVNLMQNREKILKSLMELEHWAEALAYCKLTIPFYQRVYPAVHPLLGLQYYTC 344

Query: 311 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKD 367
           GKLEW+LGDT+ A+KS+ +AV+ILRITHGTN+PFMK+L++KLEEA+AEASY+LS K+
Sbjct: 345 GKLEWYLGDTDEAVKSLIKAVDILRITHGTNTPFMKDLLMKLEEARAEASYRLSPKE 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461631|ref|XP_003601097.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula] gi|355490145|gb|AES71348.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/398 (65%), Positives = 313/398 (78%), Gaps = 38/398 (9%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAH--------------------------- 33
           MLKLYLRRKLQ+  +IPST  DNY LVEALVA                            
Sbjct: 110 MLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILFIIVVLSSRAMIVEFSLLTNMSVVI 169

Query: 34  ----------MSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNS 83
                     MSDI E+QL+LYAQ+ANLV+LILQWPEI+I EIA  FSK ACNAHT+C+S
Sbjct: 170 VLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIANFFSKFACNAHTVCDS 229

Query: 84  ELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMT 143
           ELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A VRA+QH+PKG EVLISYIETAGST+T
Sbjct: 230 ELRPLGTGLYPVVSIINHSCLPNSVLVFDGREASVRALQHIPKGTEVLISYIETAGSTVT 289

Query: 144 RQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQ 203
           RQKAL+EQYLF C CP C K+GQ++D++E+AILEGYRCK++ C GFLLR +D K F CQ+
Sbjct: 290 RQKALREQYLFQCVCPLCSKVGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQE 349

Query: 204 CGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ 263
           CGLVR KEEIK+IA+E+  L ++    +S  +H E +S +KMIEKLQ KLYHPFS+NLMQ
Sbjct: 350 CGLVRDKEEIKQIATEIKFLLEEASKPSSNDSH-EAISIHKMIEKLQTKLYHPFSINLMQ 408

Query: 264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 323
           TRE ++K LM+LE W+EALAYC+LTIP+YQRVYP  HPLLGLQYYTCGKLEW+LGDTE A
Sbjct: 409 TRETILKSLMKLEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEA 468

Query: 324 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY 361
           IKS+T+AV+ILRITHGT +PF+KEL + L EA+AEAS+
Sbjct: 469 IKSLTKAVDILRITHGTKTPFVKELSMMLVEARAEASF 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836508|ref|XP_002886136.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata] gi|297331976|gb|EFH62395.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/364 (66%), Positives = 307/364 (84%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M+KLY++R LQN+ V+P T+TDNYSLVEALV+HMS+IDEKQ+LLYAQ+ANLVNLILQ+P 
Sbjct: 114 MVKLYIKRNLQNEKVLPITSTDNYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPS 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA
Sbjct: 174 VDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRA 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           + ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C RC  +G+  DI+ESAILEGYR
Sbjct: 234 MDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNVGKPHDIEESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           C ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K  A  S  N Q  +
Sbjct: 294 CSNEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAHASPSAENKQAAI 353

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
             YK IEKLQ KLYH FS+ LM+TREKL+K+LM+LE W+EAL YC+L +PVYQRVYP  H
Sbjct: 354 ELYKTIEKLQVKLYHSFSITLMRTREKLLKMLMDLEIWREALNYCRLIVPVYQRVYPATH 413

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HGT++PFMKEL  KLEEA+AEAS
Sbjct: 414 PLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGTSTPFMKELSAKLEEARAEAS 473

Query: 361 YKLS 364
           YKL+
Sbjct: 474 YKLA 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680137|ref|NP_849969.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana] gi|94707144|sp|Q7XJS0.2|ASHR1_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR1; AltName: Full=ASH1-related protein 1; AltName: Full=Protein SET DOMAIN GROUP 37 gi|145651792|gb|ABP88121.1| At2g17900 [Arabidopsis thaliana] gi|330251606|gb|AEC06700.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/362 (65%), Positives = 302/362 (83%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
           M++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEKQ+LLYAQ+ANLVNLILQ+P 
Sbjct: 114 MVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPS 173

Query: 61  ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
           + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA
Sbjct: 174 VDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRA 233

Query: 121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
           + ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C RC   G+  DI+ESAILEGYR
Sbjct: 234 MDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYR 293

Query: 181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
           C ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K     S  + Q  +
Sbjct: 294 CANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAPTSPSAEDKQAAI 353

Query: 241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
             YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+EAL YC+L +PVYQRVYP  H
Sbjct: 354 ELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWREALNYCRLIVPVYQRVYPATH 413

Query: 301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
           PL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG ++PFMKEL  KLEEA+AEAS
Sbjct: 414 PLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGISTPFMKELSAKLEEARAEAS 473

Query: 361 YK 362
           YK
Sbjct: 474 YK 475

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2827831	480	SDG37 "SET domain group 37" [A	0.983	0.754	0.651	6.4e-131
RGD|1562635	428	Smyd3 "SET and MYND domain con	0.263	0.226	0.432	5e-30
UNIPROTKB|Q9H7B4	428	SMYD3 "Histone-lysine N-methyl	0.263	0.226	0.443	6.4e-30
MGI|MGI:1916976	428	Smyd3 "SET and MYND domain con	0.263	0.226	0.432	6.4e-30
FB|FBgn0011566	468	Bzd "Buzidau" [Drosophila mela	0.937	0.737	0.261	4.4e-29
UNIPROTKB|Q0P585	433	SMYD2 "N-lysine methyltransfer	0.418	0.355	0.350	2.1e-27
MGI|MGI:1915889	433	Smyd2 "SET and MYND domain con	0.413	0.351	0.352	2.7e-27
RGD|727785	433	Smyd2 "SET and MYND domain con	0.413	0.351	0.352	5.7e-27
UNIPROTKB|F1S2Y3	431	SMYD2 "N-lysine methyltransfer	0.413	0.352	0.345	5.8e-27
UNIPROTKB|Q9NRG4	433	SMYD2 "N-lysine methyltransfer	0.418	0.355	0.343	8e-27

TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
 Identities = 236/362 (65%), Positives = 302/362 (83%)

Query:     1 MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPE 60
             M++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEKQ+LLYAQ+ANLVNLILQ+P 
Sbjct:   114 MVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEKQMLLYAQMANLVNLILQFPS 173

Query:    61 ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 120
             + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA
Sbjct:   174 VDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRA 233

Query:   121 VQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYR 180
             + ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C RC   G+  DI+ESAILEGYR
Sbjct:   234 MDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYR 293

Query:   181 CKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVV 240
             C ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K     S  + Q  +
Sbjct:   294 CANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAPTSPSAEDKQAAI 353

Query:   241 STYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH 300
               YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+EAL YC+L +PVYQRVYP  H
Sbjct:   354 ELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWREALNYCRLIVPVYQRVYPATH 413

Query:   301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS 360
             PL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG ++PFMKEL  KLEEA+AEAS
Sbjct:   414 PLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGISTPFMKELSAKLEEARAEAS 473

Query:   361 YK 362
             YK
Sbjct:   474 YK 475

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
 Identities = 42/97 (43%), Positives = 67/97 (69%)

Query:    65 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
             ++ E F+K+ CN+ TICN+E++ +G GLYP +S++NHSC PN  +VF G   ++RAV+ +
Sbjct:   170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREI 229

Query:   125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
               G E+ I Y++   ++  R+K L++QY F C C RC
Sbjct:   230 EAGEELTICYLDMLMTSEERRKQLRDQYCFECDCIRC 266

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISO

UNIPROTKB|Q9H7B4 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
 Identities = 43/97 (44%), Positives = 67/97 (69%)

Query:    65 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
             ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct:   170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229

Query:   125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
               G E+ I Y++   ++  R+K L++QY F C C RC
Sbjct:   230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 266

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISS

MGI|MGI:1916976 Smyd3 "SET and MYND domain containing 3" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
 Identities = 42/97 (43%), Positives = 67/97 (69%)

Query:    65 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
             ++ E F+K+ CN+ TICN+E++ +G GLYP +S++NHSC PN  +VF G   ++RAV+ +
Sbjct:   170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREI 229

Query:   125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
               G E+ I Y++   ++  R+K L++QY F C C RC
Sbjct:   230 EAGEELTICYLDMLMTSEERRKQLRDQYCFECDCIRC 266

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0011566 Bzd "Buzidau" [Drosophila melanogaster (taxid:7227)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 96/367 (26%), Positives = 179/367 (48%)

Query:     1 MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDI--DEKQLL-LYAQIANLVNLILQ 57
             + +L LR +   D +    T         L++H ++I  D  +L  L +  A L +++ +
Sbjct:   115 LCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAEIKNDPMRLEHLDSLHAVLTDMMAE 174

Query:    58 WPEISIN--EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRL 115
              P    N  E+   + +L  N   I ++E+  + T +Y  +SI +HSC PNAV  FEG  
Sbjct:   175 SPSTVPNKTELMSIYGRLITNGFNILDAEMNSIATAIYLGVSITDHSCQPNAVATFEGNE 234

Query:   116 AVVRAVQHVP--KGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQES 173
               V A++ +     +++ ISYI+   +   R+  LKE Y F C C +C       D +ES
Sbjct:   235 LHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCT------DAKES 288

Query:   174 AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSC 233
               +    C +  C   +  D ++    C +C    S + ++   +E   L++  L     
Sbjct:   289 KEMLAALCPNRNCGAGISVDRNN----CPRCDAGISPK-LRNAFNEAMTLTRHNLENMKD 343

Query:   234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 293
               + +V      ++K Q  ++HP +V  ++T +   +  +E+  W +AL Y Q  +P ++
Sbjct:   344 VAYLDVCKV--CLDK-QTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFR 400

Query:   294 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKL 352
             + +  ++PLLGL +   GK++ + G ++ A+  + EA  IL +THG +   + E L + +
Sbjct:   401 KYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHRLLTEQLYMLV 460

Query:   353 EEAQAEA 359
              +A+ EA
Sbjct:   461 LQARQEA 467

GO:0006413 "translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q0P585 SMYD2 "N-lysine methyltransferase SMYD2" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
 Identities = 55/157 (35%), Positives = 86/157 (54%)

Query:     8 RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLILQWPEISINE 65
             R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +   +  E   N+
Sbjct:   111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDND 170

Query:    66 -IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
              +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +
Sbjct:   171 SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEI 230

Query:   125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
               G EV  SYI+    T  R   L++ Y FTC C  C
Sbjct:   231 HPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 267

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0002039 "p53 binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1915889 Smyd2 "SET and MYND domain containing 2" [Mus musculus (taxid:10090)]

 Score = 244 (91.0 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 56/159 (35%), Positives = 87/159 (54%)

Query:     8 RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANL---VNLILQWPEIS 62
             R L    + P  T     L V    +H+  +D EK+ L+ + IA L    +  L++P+ S
Sbjct:   111 RILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS 170

Query:    63 INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
                +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct:   171 --SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query:   123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
              +  G EV  SYI+    T  R   L++ Y FTC C  C
Sbjct:   229 EIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECREC 267

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000993 "RNA polymerase II core binding" evidence=IDA

GO:0002039 "p53 binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO

GO:0018027 "peptidyl-lysine dimethylation" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IDA

RGD|727785 Smyd2 "SET and MYND domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
 Identities = 56/159 (35%), Positives = 86/159 (54%)

Query:     8 RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
             R L    + P  T     L V    +H+  +D EK+ L+ + IA L       L++P+ S
Sbjct:   111 RILAKQKMHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKHLEFPDHS 170

Query:    63 INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
                +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct:   171 --SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query:   123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
              +  G EV  SYI+    T  R   L++ Y FTC C  C
Sbjct:   229 EIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECREC 267

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISO;ISS

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO;ISS

GO:0016571 "histone methylation" evidence=ISO

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO;ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISO;ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISO;ISS

UNIPROTKB|F1S2Y3 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 55/159 (34%), Positives = 88/159 (55%)

Query:     8 RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
             R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +     L++P+  
Sbjct:   109 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDS- 167

Query:    63 INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
              + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct:   168 -DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 226

Query:   123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
              +  G EV  SYI+    T  R   L++ Y FTC C  C
Sbjct:   227 EIHPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 265

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0018027 "peptidyl-lysine dimethylation" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000993 "RNA polymerase II core binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9NRG4 SMYD2 "N-lysine methyltransferase SMYD2" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 8.0e-27, Sum P(2) = 8.0e-27
 Identities = 54/157 (34%), Positives = 85/157 (54%)

Query:     8 RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLILQWPEISINE 65
             R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +   +      N+
Sbjct:   111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDND 170

Query:    66 -IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
              +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +
Sbjct:   171 SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEI 230

Query:   125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRC 161
               G EV  SYI+    T  R   L++ Y FTC C  C
Sbjct:   231 KPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 267

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IMP

GO:0018026 "peptidyl-lysine monomethylation" evidence=IDA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0002039 "p53 binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XJS0	ASHR1_ARATH	2, ., 1, ., 1, ., 4, 3	0.6519	0.9836	0.7541	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
pfam00856	113	pfam00856, SET, SET domain	6e-09
smart00317	124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	7e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	9e-05

>gnl|CDD|216155 pfam00856, SET, SET domain

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 78  HTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLIS 133
            +  +SE     TGL  V   INHSC PN  + F     G   VVRA++ +  G E+ I 
Sbjct: 52  LSRLDSEYDIDATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTID 111

Query: 134 Y 134
           Y
Sbjct: 112 Y 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 89  GTGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYI 135
                 +   INHSC PN  L+F         V+ A++ +  G E+ I Y 
Sbjct: 68  ARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYG 118

Putative methyl transferase, based on outlier plant homologues. Length = 124

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 319
           +L      L  +L  L D+ EAL   +  + +  R   + HP          +L   LGD
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGD 61

Query: 320 TENAIKSMTEAVEILR 335
            + A++ + +A+ +  
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
KOG2084	482	consensus Predicted histone tail methylase contain	99.86
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.48
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.45
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.38
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.23
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	99.08
KOG2589	453	consensus Histone tail methylase [Chromatin struct	98.87
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.44
PRK15359	144	type III secretion system chaperone protein SscB;	98.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.36
KOG0553	304	consensus TPR repeat-containing protein [General f	98.34
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.31
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.25
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.22
PRK10803	263	tol-pal system protein YbgF; Provisional	98.2
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.14
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.09
KOG4442	729	consensus Clathrin coat binding protein/Huntingtin	98.07
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.04
COG2940	480	Proteins containing SET domain [General function p	98.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.0
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.0
PF13512	142	TPR_18: Tetratricopeptide repeat	97.94
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.94
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.86
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.83
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.78
KOG1080	1005	consensus Histone H3 (Lys4) methyltransferase comp	97.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.72
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.7
PF12688	120	TPR_5: Tetratrico peptide repeat	97.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.61
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.6
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.56
PRK11189	296	lipoprotein NlpI; Provisional	97.54
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	97.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.5
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.44
PF13371	73	TPR_9: Tetratricopeptide repeat	97.41
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.36
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.33
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.32
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.29
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.25
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.21
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.18
PRK15331	165	chaperone protein SicA; Provisional	97.16
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.16
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.14
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.08
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.08
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.0
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.99
KOG4234	271	consensus TPR repeat-containing protein [General f	96.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.97
KOG1082	364	consensus Histone H3 (Lys9) methyltransferase SUV3	96.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.85
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.82
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.79
PRK04841	903	transcriptional regulator MalT; Provisional	96.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.66
PRK12370	553	invasion protein regulator; Provisional	96.65
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.62
PF12688	120	TPR_5: Tetratrico peptide repeat	96.61
PRK12370	553	invasion protein regulator; Provisional	96.59
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.56
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.53
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.37
KOG1141	1262	consensus Predicted histone methyl transferase [Ch	96.36
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	96.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.33
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.28
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.2
PRK10803	263	tol-pal system protein YbgF; Provisional	96.17
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.12
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.06
KOG1126	638	consensus DNA-binding cell division cycle control	96.01
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.0
PRK14574	822	hmsH outer membrane protein; Provisional	95.97
KOG1125	579	consensus TPR repeat-containing protein [General f	95.97
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.94
KOG1337	472	consensus N-methyltransferase [General function pr	95.94
PRK04841	903	transcriptional regulator MalT; Provisional	95.92
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.89
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.83
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.72
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.64
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.63
PRK11189	296	lipoprotein NlpI; Provisional	95.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.49
PRK15359	144	type III secretion system chaperone protein SscB;	95.44
KOG1085	392	consensus Predicted methyltransferase (contains a	95.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.31
KOG0547	606	consensus Translocase of outer mitochondrial membr	95.28
KOG0547	606	consensus Translocase of outer mitochondrial membr	95.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.16
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.13
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.09
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.05
PF13371	73	TPR_9: Tetratricopeptide repeat	94.99
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.9
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.85
KOG2076	895	consensus RNA polymerase III transcription factor	94.79
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.71
KOG1126	638	consensus DNA-binding cell division cycle control	94.69
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.61
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.61
KOG4555	175	consensus TPR repeat-containing protein [Function	94.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.24
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.95
KOG1125	579	consensus TPR repeat-containing protein [General f	93.92
KOG0553	304	consensus TPR repeat-containing protein [General f	93.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.83
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.8
KOG2376	652	consensus Signal recognition particle, subunit Srp	93.75
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.75
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	93.72
KOG2076	895	consensus RNA polymerase III transcription factor	93.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.59
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	93.58
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.36
KOG1129	478	consensus TPR repeat-containing protein [General f	93.32
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.31
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	93.17
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.03
KOG2003	840	consensus TPR repeat-containing protein [General f	92.98
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.93
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.81
KOG2003	840	consensus TPR repeat-containing protein [General f	92.81
KOG3060	289	consensus Uncharacterized conserved protein [Funct	92.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.5
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.47
PRK14574	822	hmsH outer membrane protein; Provisional	92.3
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.24
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	92.07
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	92.05
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	91.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	91.9
KOG1585	308	consensus Protein required for fusion of vesicles	91.81
KOG1586	288	consensus Protein required for fusion of vesicles	91.71
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.59
KOG1128	777	consensus Uncharacterized conserved protein, conta	91.17
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.07
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	90.84
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	90.8
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.76
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	90.55
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	90.5
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.45
PF13428	44	TPR_14: Tetratricopeptide repeat	90.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.98
KOG1338	466	consensus Uncharacterized conserved protein [Funct	89.94
PF13428	44	TPR_14: Tetratricopeptide repeat	89.81
PLN03077	857	Protein ECB2; Provisional	89.78
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	89.5
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	89.09
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.78
PF13512	142	TPR_18: Tetratricopeptide repeat	88.14
KOG1081	463	consensus Transcription factor NSD1 and related SE	88.03
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	88.01
KOG0508	615	consensus Ankyrin repeat protein [General function	87.98
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	87.96
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	87.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	87.62
PLN03218	1060	maturation of RBCL 1; Provisional	87.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	86.88
KOG4555	175	consensus TPR repeat-containing protein [Function	86.7
KOG0508	615	consensus Ankyrin repeat protein [General function	86.14
KOG1129	478	consensus TPR repeat-containing protein [General f	86.14
PRK14720	906	transcript cleavage factor/unknown domain fusion p	85.84
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.8
COG4783	484	Putative Zn-dependent protease, contains TPR repea	85.79
PRK14720	906	transcript cleavage factor/unknown domain fusion p	85.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	85.4
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	85.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	85.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	84.84
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.79
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.76
PF13431	34	TPR_17: Tetratricopeptide repeat	84.62
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	84.58
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	84.25
PLN03218	1060	maturation of RBCL 1; Provisional	84.22
PRK15331	165	chaperone protein SicA; Provisional	84.17
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	84.03
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	83.78
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	83.62
PLN02789	320	farnesyltranstransferase	83.34
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.94
PF13431	34	TPR_17: Tetratricopeptide repeat	82.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	82.66
COG3947	361	Response regulator containing CheY-like receiver a	82.55
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	82.06
KOG1585	308	consensus Protein required for fusion of vesicles	81.72
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	80.98
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	80.9
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	80.74
KOG3785	557	consensus Uncharacterized conserved protein [Funct	80.63
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	80.55
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	80.39
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	80.15
PLN03077	857	Protein ECB2; Provisional	80.12

>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]

Probab=99.86  E-value=5.4e-20  Score=184.48  Aligned_cols=285  Identities=27%  Similarity=0.420  Sum_probs=216.0

Q ss_pred             HHHHHHHHhhhhccccccccCCCC----ceeEEEccccccccCCCccCcEEEEeCCEEEEEEccCCCCCC-eeEEeccCC
Q 017649           63 INEIAENFSKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EVLISYIET  137 (368)
Q Consensus        63 ~~~~~~~~~~~~~N~~~i~~~~~~----~~g~~lyp~~s~~nHsC~PN~~~~~~~~~~~~~a~~~i~~ge-el~~~Y~~~  137 (368)
                      ...+..++..+..+++.+.+....    .+|.|+||..+++||||.||+...|++....+++...+.+++ +|+++|++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~  248 (482)
T KOG2084|consen  169 ADCISKLFPSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDP  248 (482)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeeccc
Confidence            344566777777888887766544    499999999999999999999999999999999999998887 999999999


Q ss_pred             CCCHHHHHHHHhcCCCeEeeccccCCcCcCCcchhhhhhhcCccCCCCCccceeecCCC---CccccCCCCCCCCHHHHH
Q 017649          138 AGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDD---KGFTCQQCGLVRSKEEIK  214 (368)
Q Consensus       138 ~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~---~~~~C~~C~~~~~~~~~~  214 (368)
                      .+++..|++.|+..|+|.|.|++|.+|+     +...+..+++|..++|.+.+.+....   ..|.|..|........+.
T Consensus       249 ~~~~~~r~~~l~~~~~f~c~c~rc~d~~-----~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  323 (482)
T KOG2084|consen  249 LLSTASRQKQLRQSKLFSCQCPRCLDPT-----ELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVV  323 (482)
T ss_pred             ccCHHHHHHHHhhccceeeecCCCCCCC-----ccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHH
Confidence            9999999999999999999999999864     23456778999999998776654433   489999999988877666


Q ss_pred             HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----------hhhHHHHHHH
Q 017649          215 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----------LEDWKEALAY  284 (368)
Q Consensus       215 ~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----------~g~~~~Al~~  284 (368)
                      .........  .+   ...+.    ....+.+........++.+.........+..++..          ...+..+..+
T Consensus       324 ~~~~~~~~~--~~---~~~~~----~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~  394 (482)
T KOG2084|consen  324 ESREELQNE--LL---DAFSD----LLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLNL  394 (482)
T ss_pred             HHHHHHHhh--cc---ccCCh----hhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHh
Confidence            555443321  00   01111    11112222233445666666555444444444432          2345566666


Q ss_pred             H--HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649          285 C--QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  361 (368)
Q Consensus       285 ~--~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~  361 (368)
                      +  ...+.+++.+.|..++..+...+.++.....+++...+++.......++....+.+++........+.........
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (482)
T KOG2084|consen  395 FECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGP  473 (482)
T ss_pred             hhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhh
Confidence            6  8889999999999999999999999999999898889999999999999999999999888887777666554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.48  E-value=9e-13  Score=130.95  Aligned_cols=134  Identities=15%  Similarity=0.151  Sum_probs=124.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+..+|+|++|+.+++.++++..+.+|..|+.+..+...+|.+|+.++++.+|+.++++++.+.+.++|+.||
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            33446677889999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      .+|..+.+||.+|...|++.+|..++++|++|.+..+|..||.+...+..+..+
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~  334 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI  334 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998877666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.45  E-value=1.5e-12  Score=129.35  Aligned_cols=132  Identities=18%  Similarity=0.272  Sum_probs=126.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .|..+...+++.+|+.+|++++.+.+.++|+.|+.++.++.+|+.+|...|+|++|..+|+++++++++++|..||.++.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            56667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      .+.+++.++...+++++|+.++++|++|+...+|++|+.+..+...|..+..
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~  378 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL  378 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987753

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.38  E-value=1.6e-12  Score=110.08  Aligned_cols=61  Identities=39%  Similarity=0.616  Sum_probs=49.9

Q ss_pred             ccccccccCCCCceeEEEccccccccCCCccCcEEEEe----CCEEEEEEccCCCCCCeeEEecc
Q 017649           75 CNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLISYI  135 (368)
Q Consensus        75 ~N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~~~~~~----~~~~~~~a~~~i~~geel~~~Y~  135 (368)
                      ..............+.++||.++++||||.|||.+.|+    +..++++|.|+|++||||++||+
T Consensus        98 ~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG  162 (162)
T PF00856_consen   98 SDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG  162 (162)
T ss_dssp             HEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred             eeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence            33333333444567899999999999999999999998    78999999999999999999996

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.23  E-value=3.2e-11  Score=90.32  Aligned_cols=77  Identities=22%  Similarity=0.349  Sum_probs=72.5

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      |+.++.++.+++.+|..+|+|++|++++++++++ .+.+|+.||.++..+.++|.++..+|++++|++++++|++|.+
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            6788999999999999999999999999999999 8888999999999999999999999999999999999999876

...

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=99.08  E-value=8.2e-11  Score=94.50  Aligned_cols=45  Identities=33%  Similarity=0.512  Sum_probs=39.7

Q ss_pred             EEEccccccccCCCccCcEEEEeCC----EEEEEEccCCCCCCeeEEec
Q 017649           90 TGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISY  134 (368)
Q Consensus        90 ~~lyp~~s~~nHsC~PN~~~~~~~~----~~~~~a~~~i~~geel~~~Y  134 (368)
                      ..++|.++++||||.||+...+...    .+.++|+|+|++||||+++|
T Consensus        68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            4478999999999999999876532    59999999999999999998

Putative methyl transferase, based on outlier plant homologues

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]

Probab=98.87  E-value=1.8e-09  Score=99.98  Aligned_cols=82  Identities=24%  Similarity=0.379  Sum_probs=63.7

Q ss_pred             hhccccccccCCCCceeEEEc-cccccccCCCccCcEEEEeC-CEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhc
Q 017649           73 LACNAHTICNSELRPLGTGLY-PVISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE  150 (368)
Q Consensus        73 ~~~N~~~i~~~~~~~~g~~ly-p~~s~~nHsC~PN~~~~~~~-~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~  150 (368)
                      -..|-|+|.-+....- ..|| -.++++||+|.|||..+-.| +++.|+++|||+||||||.-|++.+.+.         
T Consensus       174 ~g~nDFSvmyStRk~c-aqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG~---------  243 (453)
T KOG2589|consen  174 GGGNDFSVMYSTRKRC-AQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFGE---------  243 (453)
T ss_pred             ccCCceeeeeecccch-hhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccCC---------
Confidence            3467788765543322 3344 35689999999999887777 7899999999999999999999988763         


Q ss_pred             CCCeEeeccccCCcC
Q 017649          151 QYLFTCTCPRCIKLG  165 (368)
Q Consensus       151 ~~~F~C~C~~C~~~~  165 (368)
                       ..-.|.|..|...+
T Consensus       244 -~N~~CeC~TCER~g  257 (453)
T KOG2589|consen  244 -NNEECECVTCERRG  257 (453)
T ss_pred             -CCceeEEeeccccc
Confidence             23589999999853

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.71  E-value=2.2e-07  Score=80.14  Aligned_cols=127  Identities=16%  Similarity=0.038  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .......+......|++++|+..+++++.+.     +++.....++.+++.++...|++++|+.++++++.+. ..++..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~  108 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQA  108 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHH
Confidence            3445566777778899999999999987752     3444556688999999999999999999999999763 233455


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      +..+|..+..+|..+..+|++++|+..+.+|+.+++...|.+|+.+.++..-+
T Consensus       109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~  161 (168)
T CHL00033        109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL  161 (168)
T ss_pred             HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            66777777788887779999999999999999999999999998776665544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.58  E-value=8.8e-07  Score=70.83  Aligned_cols=114  Identities=15%  Similarity=0.087  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      ..+..+..+...|++++|++.+..++..     +|.++....+...++.++...|++++|+.+++.++..+     |.++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~   73 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSP   73 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCC
Confidence            4566677778899999999999888653     45666667778889999999999999999999888643     5677


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  350 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~  350 (368)
                      .....++.+|.++..+|++++|+.++.++++.     .|+++.+.+...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~  117 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK  117 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence            66777899999999999999999999999886     577777666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.44  E-value=1.5e-06  Score=64.69  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHh
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  294 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~  294 (368)
                      ..+...+..+...|++++|++.+++++.+ ...+++.|+.++.+..+++.++..+|++++|+++++++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            34566777788999999999999999999 66789999999999999999999999999999999999998874

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.40  E-value=1.6e-05  Score=66.78  Aligned_cols=114  Identities=12%  Similarity=0.100  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|...+..++..        ++.-..++..++.++..+|++++|+..+.+++..     .|.+ 
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~-   91 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASH-   91 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC-
Confidence            3445677788999999999999887653        2334567788999999999999999999999863     3444 


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                        ...++++|.++..+|++++|+..+.+|+.     ..|+++.+..+........
T Consensus        92 --~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         92 --PEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             --cHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence              46679999999999999999999999987     4688887776666554443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.36  E-value=3.2e-05  Score=65.27  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  297 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g  297 (368)
                      +.+..++..|-.+...|++++|.++++.+..     +.|.   ...-..+|+.++..+|+|++|++.+.+++.     +.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-----~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~   99 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTI-----YDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK   99 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence            4566778888889999999999999987643     3333   344577899999999999999999998875     44


Q ss_pred             CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      +++|.   .++++|..+...|+.++|++.|+.|+.+..     ++|....+..+.+....
T Consensus       100 ~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363        100 IDAPQ---APWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHH
Confidence            67774   479999999999999999999999998763     66777777766555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=1e-05  Score=74.35  Aligned_cols=122  Identities=18%  Similarity=0.224  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  297 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g  297 (368)
                      ...+.+-.+..+++..++|++|+..|.+++.     |.|.++.+.   -+=|.+|.++|.++.|++=|+.++.       
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyy---cNRAAAy~~Lg~~~~AVkDce~Al~-------  143 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYY---CNRAAAYSKLGEYEDAVKDCESALS-------  143 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHH---HHHHHHHHHhcchHHHHHHHHHHHh-------
Confidence            3445566677778888999999999998876     456676553   4567889999999999999999986       


Q ss_pred             CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhh
Q 017649          298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL  363 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~  363 (368)
                       ..|.....|-+||.++..+|++++|+..|+||++|     -|+.+.++.-+   .-++..+....
T Consensus       144 -iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL---~~Ae~~l~e~~  200 (304)
T KOG0553|consen  144 -IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNL---KIAEQKLNEPK  200 (304)
T ss_pred             -cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHH---HHHHHHhcCCC
Confidence             45777788899999999999999999999999974     56777665544   44444444444

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.31  E-value=2.7e-06  Score=91.00  Aligned_cols=128  Identities=18%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      ......+|.+.++.+ .-+.+.....+++.-|+.+...+..|+.++..+|++++|+.+++++.-+.+++.|.+||.+...
T Consensus       939 gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen  939 GQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred             hhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence            334456677887877 6666777778888889999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          307 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      +.+++...+..+....|...+.+|..+....+|++||.+.-+..+++.+
T Consensus      1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred             hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence            9999999999999999999999999999999999999998887766665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.28  E-value=1e-06  Score=57.11  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=28.8

Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      ++..+.+||.++..+|++++|+.++++|+.+.+..+|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            457889999999999999999999999999999999999993

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.25  E-value=1.2e-05  Score=69.56  Aligned_cols=129  Identities=15%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .......+..+...|++++|+..+++++...     +.......+..+++.++...|++++|+.++++++...... +..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~  108 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSA  108 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHH
Confidence            3445667777788899999999999887653     2233345678899999999999999999999988753211 122


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                      +..+|..+..+|.....++++++|+..+.+|+++++...+.++..+.++..-+..
T Consensus       109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  163 (172)
T PRK02603        109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT  163 (172)
T ss_pred             HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence            2334555555555555667789999999999999999998888877777766544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.22  E-value=1.9e-06  Score=55.75  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ++.++++|+.+|...|++++|+.++++++.++++++|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            356789999999999999999999999999999999999994

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.20  E-value=3e-05  Score=71.85  Aligned_cols=114  Identities=15%  Similarity=0.119  Sum_probs=91.7

Q ss_pred             HHHHHHh-hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          224 SKKTLAL-TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       224 ~~~a~~~-~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ++.|..+ ...|++++|+..|+.++..     +|++.....++..|+.+|...|++++|+.++++++..+     |.||.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~  215 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPK  215 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcc
Confidence            3334443 4568999999999888764     57777778889999999999999999999988888654     68999


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ....++++|.++..+|++++|...|+++++.+     |+++........|
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL  260 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL  260 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence            99999999999999999999999999887643     4555555555444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.19  E-value=3.3e-05  Score=74.88  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +...|...+..|++++|+..+.+++.+     .|.+   ..++.+++.+|..+|++++|+..+++++...     |.+  
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~--   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIELD-----PSL--   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCC--
Confidence            455677788999999999999998864     3444   4567889999999999999999999998742     333  


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                       +..++.+|.++..+|++++|+..|++|+.+     .|+++.....+..+
T Consensus        70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~  113 (356)
T PLN03088         70 -AKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLIKEC  113 (356)
T ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence             456889999999999999999999999973     46777665555444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.14  E-value=8.7e-05  Score=61.00  Aligned_cols=109  Identities=20%  Similarity=0.305  Sum_probs=83.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|...+++++..     +|.+   ..+...++.++..+|++++|..++++++..        +|.
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~   83 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DPD   83 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCC
Confidence            455666677889999999998887653     3433   456778999999999999999999988764        233


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ....++.+|.++...|++++|+.+++++++.     .|+.+....+...+
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~  128 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERA  128 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHH
Confidence            4556788999999999999999999999985     35666555555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.09  E-value=6e-05  Score=67.63  Aligned_cols=138  Identities=15%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             CccccCCCCCCCCHHHH--------HHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHH
Q 017649          197 KGFTCQQCGLVRSKEEI--------KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL  268 (368)
Q Consensus       197 ~~~~C~~C~~~~~~~~~--------~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~L  268 (368)
                      ..|.|+.||........        +.+...+..... ...+....++++|+..|..++-. ..+.+..+...+.+...+
T Consensus        47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~-~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl  124 (214)
T PF09986_consen   47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWK-PRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL  124 (214)
T ss_pred             eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence            35899999976554433        222222222221 11344445788999988877654 345566677888889999


Q ss_pred             HHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC-C----hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          269 IKILMELEDWKEALAYCQLTIPVYQRVYPQF-H----PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       269 a~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~-h----p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      |-+|..+|+-+....+++++++.|+..|-.. .    ..-...++-+|.+...+|++++|..++.+.+..-..
T Consensus       125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            9999999998888889999999888776522 2    233567888999999999999999999998864433

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=3.3e-06  Score=84.85  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             ceeEEEccccc-cccCCCccCcEE---EEeC-CEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           87 PLGTGLYPVIS-IINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        87 ~~g~~lyp~~s-~~nHsC~PN~~~---~~~~-~~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      .|....+-..| ++||||+|||.+   +..| .++=+.|.++|++|||||+.|-....+
T Consensus       184 ~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYG  242 (729)
T KOG4442|consen  184 YIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYG  242 (729)
T ss_pred             eecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccccc
Confidence            46667777666 679999999964   3333 356788999999999999999654433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.04  E-value=2.6e-05  Score=77.77  Aligned_cols=96  Identities=22%  Similarity=0.228  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      +..+.|..+.+.|+..+|+..|.+++.+.     |+|   .+++++|+.+|+++|.+++|..+++++++++        |
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~--------p  385 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVF--------P  385 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------h
Confidence            44566777888899999999999888753     333   4578899999999999999999999988754        6


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+-...+||.+|-.+|++.+|+..|++|++|
T Consensus       386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            67778889999999999999999999998876

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=98.00  E-value=3e-06  Score=85.33  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=58.9

Q ss_pred             cccccccCCCccCcEEEEeCC----EEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeeccccCC
Q 017649           94 PVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIK  163 (368)
Q Consensus        94 p~~s~~nHsC~PN~~~~~~~~----~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~  163 (368)
                      ....++||||.||+.....+.    .+.++|++||.+||||+..|.........+...+...+...|.|.+|..
T Consensus       404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (480)
T COG2940         404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSH  477 (480)
T ss_pred             cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCC
Confidence            345689999999998876543    7889999999999999999988776655566778888999999999986

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.00  E-value=8.9e-05  Score=67.16  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ...+..+..+...|++++|+..+++++..     .|.++....++..++.++...|++++|+..+++++...     |.+
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~  103 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNH  103 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCC
Confidence            34566677778899999999999887653     46677777788999999999999999999999988643     466


Q ss_pred             hHHHHHHhhhhhHhhhc--------CChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~--------g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      |.....++.+|.++...        |++++|++.+++++..     -|+++...+.+
T Consensus       104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~  155 (235)
T TIGR03302       104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAK  155 (235)
T ss_pred             CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHH
Confidence            66666677888887765        7889999999998764     45555444443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.00  E-value=0.00023  Score=65.31  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....|......|++++|+..++.++.     .+|..+....+...|+.++...+++++|+.++++.+..+     |.||
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~  103 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP  103 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCC
Confidence            456677788889999999999998876     356677777888899999999999999999999998755     7899


Q ss_pred             HHHHHHhhhhhHhhhcC---------------ChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  360 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g---------------~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~  360 (368)
                      .+...++.+|..+..++               +...+.+.+..--++++.-  |++++..+....|..+...|.
T Consensus       104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHH
Confidence            99999999998764443               1122222222222233333  577888888887777755443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.94  E-value=0.00016  Score=59.98  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+...|...+..|+|.+|++.++.+...     +|.....-++...|+.+|...++|++|+.-+++.+.     +-|.||
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp   81 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCC
Confidence            4667777888999999999998887653     466777778899999999999999999999888876     457999


Q ss_pred             HHHHHHhhhhhHhhhcCC
Q 017649          302 LLGLQYYTCGKLEWFLGD  319 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~  319 (368)
                      .+..+++..|..+..+..
T Consensus        82 ~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   82 NVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CccHHHHHHHHHHHHHhh
Confidence            999999999988887765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.94  E-value=0.00056  Score=60.88  Aligned_cols=126  Identities=21%  Similarity=0.231  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ...+...|...+..|++.+|+..++.+...     .|.++....+...++.++...|+|.+|+..+++.+..+     |.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            356778888899999999999999988764     57788888999999999999999999999988888654     57


Q ss_pred             ChHHHHHHhhhhhHhhhcCC-----------hHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649          300 HPLLGLQYYTCGKLEWFLGD-----------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  360 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~-----------~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~  360 (368)
                      ||.+...++.+|..+..+.+           ..+|...+++.++     -=|+++++.+...+|..+...+.
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~-----~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK-----RYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH-----H-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH-----HCcCchHHHHHHHHHHHHHHHHH
Confidence            89998999999988765431           2234444333332     23788999988888887765544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.90  E-value=8.3e-05  Score=56.19  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=60.0

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  312 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  312 (368)
                      +|++++|+..+++++.....     ++ -......+|.+|..+|+|++|+.++++ +..-     +.++   ...+.+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~~---~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSNP---DIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCHH---HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCCH---HHHHHHHH
Confidence            57899999999998875421     22 223455689999999999999999888 2211     2333   33345599


Q ss_pred             HhhhcCChHHHHHHHHHH
Q 017649          313 LEWFLGDTENAIKSMTEA  330 (368)
Q Consensus       313 l~~~~g~~~eA~~~l~kA  330 (368)
                      .+..+|++++|++.|++|
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999986

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.86  E-value=0.00013  Score=72.97  Aligned_cols=114  Identities=16%  Similarity=0.209  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~  298 (368)
                      ..+++.+.+....++|++++|..+|++++..        .+....+.++|+.+|-.+|++++|+..++.++.+       
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-------  417 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-------  417 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-------
Confidence            3456667777788888999999998888764        3456777888999998899999998888888753       


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                       .|..+.++.++|..|-.+|+..+|+..|.+|+.+        .|.+.+.-.+|+.+.
T Consensus       418 -~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  418 -KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY  466 (966)
T ss_pred             -CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence             4667777788888887888888888887777764        344445555554443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.83  E-value=0.00026  Score=59.35  Aligned_cols=95  Identities=20%  Similarity=0.129  Sum_probs=64.0

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      .+..|..+...|++++|...++.++...     ++......++..|+.++...|++++|+..+..         .+..+.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~  116 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAF  116 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcch
Confidence            3445666777888888888888776531     22222334556688888888888888777644         122333


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      .+.....+|.++...|++++|+..|++|+
T Consensus       117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  117 KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            44556677888888888888888888774

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.78  E-value=0.00014  Score=52.45  Aligned_cols=63  Identities=29%  Similarity=0.442  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcC-ChHHHHHHHHHHHHh
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI  333 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~kAl~i  333 (368)
                      .+...+|..+...|+|++|+.++.++++.        +|.-...++++|.++..+| ++.+|+..+++|+++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            45678899999999999999999999985        2444457899999999999 799999999999875

...

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]

Probab=97.77  E-value=1.9e-05  Score=84.30  Aligned_cols=42  Identities=31%  Similarity=0.507  Sum_probs=34.9

Q ss_pred             cccccCCCccCcEEE---EeC-CEEEEEEccCCCCCCeeEEeccCC
Q 017649           96 ISIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEVLISYIET  137 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~---~~~-~~~~~~a~~~i~~geel~~~Y~~~  137 (368)
                      +.+|||||.|||...   .+| .++++.|.|+|.+|||||-.|-..
T Consensus       940 Ar~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~  985 (1005)
T KOG1080|consen  940 ARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFP  985 (1005)
T ss_pred             hheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccc
Confidence            568999999999653   344 479999999999999999999543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.72  E-value=0.00078  Score=59.37  Aligned_cols=92  Identities=13%  Similarity=0.100  Sum_probs=47.9

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..+++++..     +|.+   ..+...++.++...|++++|++++++++..     .+.++   
T Consensus        36 ~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~---   99 (234)
T TIGR02521        36 QLALGYLEQGDLEVAKENLDKALEH-----DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG---   99 (234)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---
Confidence            3444455566666666666655432     1222   234445566666666666666666655542     11222   


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ..++++|.++...|++++|+.++.++++
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~  127 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE  127 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            2344555555555555555555555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.0012  Score=61.80  Aligned_cols=125  Identities=15%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      |..+...+++++|...|.++.....+ .+ +.......+...+.+|... ++.+|+.++++++++|...  ......+..
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~-~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~  116 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEK-LG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKC  116 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence            33455778999999999999887665 22 2345567777888887666 9999999999999999633  455566889


Q ss_pred             HhhhhhHhhhc-CChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          307 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       307 l~~La~l~~~~-g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      +.++|.++... |++++|+.+|++|.++++..-  ..-...+...++..+..+
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHH
Confidence            99999999998 999999999999999999873  222345566666655443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.70  E-value=0.00042  Score=61.72  Aligned_cols=96  Identities=11%  Similarity=0.060  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ...+..+..+..+|++..|.+.++++++.        ++....+...+|.+|...|+-+.|-+.+++++.        .+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~   99 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LA   99 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cC
Confidence            34455667788889999998888888764        344455666788888888888888888888775        45


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      |.-|-.++|.|-.++.+|++++|..+|.+|+.
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            66666777777777777777777777777664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.69  E-value=0.00079  Score=54.66  Aligned_cols=100  Identities=20%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      .++.|..+...|+.++|+.+|++++..     +.......++.-.++..+..+|++++|+.+.+..+.    -+|.+. .
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~-~   73 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDE-L   73 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc-c
Confidence            466777888999999999999998763     333445567788899999999999999999988764    234322 2


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      -+.....++..+..+|+.+||+..+-.++.
T Consensus        74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   74 NAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222334477788999999999999888774

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.61  E-value=0.00061  Score=50.20  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=71.9

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..++.++..     .|.+.   .+...++.++...+++++|++++.+++...     +.++   
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---   68 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA---   68 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---
Confidence            4455566788999999998887654     23232   556789999999999999999998887642     2333   


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..++.+|.++...|++++|..++.+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            56788999999999999999999998764

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.002  Score=61.80  Aligned_cols=108  Identities=14%  Similarity=0.207  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh--cccCCccc-----cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK--KLYHPFSV-----NLMQTREKLIKILMELEDWKEALAYCQLTIP  290 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~--~~l~~~h~-----~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~  290 (368)
                      .......+.+..++..|+|..|...|++++....  ....+.-.     ....++.|||.++..+++|.+|+.+|.++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            4444555667788899999999999999877532  22222211     2235778999999999999999999999987


Q ss_pred             hHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          291 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       291 ~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                           ..+.|+   ..+|+=|+++..+|+++.|+..|++|+++
T Consensus       286 -----~~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  286 -----LDPNNV---KALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             -----cCCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence                 345554   67899999999999999999999999973

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.56  E-value=0.00041  Score=49.44  Aligned_cols=59  Identities=22%  Similarity=0.357  Sum_probs=50.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .++..+...|+|++|++.+++++..        +|.-...++.+|.++..+|++++|+.++++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4788899999999999999998863        3667788899999999999999999999999864

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.54  E-value=0.00095  Score=63.01  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ...+..+..+...|++++|+..+.+++++     .|+   ...++.+++.++...|++++|++.++++++.     .|++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~  131 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALAL-----RPD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTY  131 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC
Confidence            34556677778889999999999888764     344   3567889999999999999999999998863     2333


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                         ...+.++|.++...|++++|+..+++++++
T Consensus       132 ---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        132 ---NYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence               456789999999999999999999999873

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=97.51  E-value=0.00091  Score=72.24  Aligned_cols=121  Identities=17%  Similarity=0.082  Sum_probs=107.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      ...+...|...+.+++.+..-.+++.||.++.+..++..++...++++.|+++.+.++...++++|+.+..++..+..+|
T Consensus      1027 ~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a 1106 (1236)
T KOG1839|consen 1027 AVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALA 1106 (1236)
T ss_pred             hccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHH
Confidence            33345556666667776666678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          312 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      .+....+.+..|..+.+.++.|+...+|++|+.+++...-+
T Consensus      1107 ~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~ 1147 (1236)
T KOG1839|consen 1107 RLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWL 1147 (1236)
T ss_pred             HHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHH
Confidence            99999999999999999999999999999999998876554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.0008  Score=61.53  Aligned_cols=100  Identities=19%  Similarity=0.162  Sum_probs=87.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +++.|-.+...|+|.+|...|...+..     .|+...+..++..|++++..+|+|+.|...+..++..|     |.||-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            566677778889999999999887764     57888999999999999999999999999988887744     57787


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .--.+++||.+...+|+.++|...|++..+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            778899999999999999999999998775

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.50  E-value=0.0031  Score=55.50  Aligned_cols=94  Identities=12%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|++.+++++..      +.++........++.++...|++++|..++.+++...     +.++   .
T Consensus       105 ~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~---~  170 (234)
T TIGR02521       105 YGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----PQRP---E  170 (234)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCh---H
Confidence            344455677888888887777642      1122334456678888888889998888888877632     2333   3


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .+..+|.++...|++++|+.++++++++
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667888999999999999999998886

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.48  E-value=0.0049  Score=55.66  Aligned_cols=121  Identities=17%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh--------hhHHHHHHHHHhhhhhHHh
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQR  294 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~--------g~~~~Al~~~~~~l~~~e~  294 (368)
                      ....+..+...|++++|+..++++++.     .|+++....+...++.++...        |++++|++.+++++..+  
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--  145 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--  145 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--
Confidence            355667778889999999999988764     466777666777888888765        88999999988887542  


Q ss_pred             hcCCCChHHH--------------HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          295 VYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       295 ~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                         |.++...              .....+|.++...|++.+|+..++++++..     |++|...+....+..+...
T Consensus       146 ---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       146 ---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLK  215 (235)
T ss_pred             ---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHH
Confidence               2333221              123467888999999999999999998753     3346555555555555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.44  E-value=0.0085  Score=50.11  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ....+..+......++...+...++.+...     +|+.+.-..+.-.++..+...|++++|...++.++..     .++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d   80 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD   80 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence            344455555555678888777666665542     4556566677888999999999999999999988872     245


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~k  329 (368)
                      .....+..+.||.++..+|++++|+..+.+
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            566678889999999999999999999855

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.41  E-value=0.00043  Score=50.45  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=58.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          268 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       268 La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      |..+|...++|++|++++++++..        +|.-...++..|.++..+|++.+|+..+.++++     .+|+++....
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-----~~p~~~~~~~   67 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALE-----LSPDDPDARA   67 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH-----HCCCcHHHHH
Confidence            456789999999999999998874        344446678899999999999999999999994     5667777666


Q ss_pred             HHHHH
Q 017649          348 LILKL  352 (368)
Q Consensus       348 l~~~L  352 (368)
                      +..+|
T Consensus        68 ~~a~l   72 (73)
T PF13371_consen   68 LRAML   72 (73)
T ss_pred             HHHhc
Confidence            66554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.37  E-value=0.0025  Score=66.40  Aligned_cols=92  Identities=11%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..+++++..     .|+++   .++..++.++...|++++|+.+++++++..        |...
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~  433 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALKL-----NSEDP---DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFI  433 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCH
Confidence            3444455566666666666665443     23332   344556666666666666666666665431        1222


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ..+.++|.++..+|++++|+..+++|+.
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~  461 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKK  461 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2344455555555555555555555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.36  E-value=0.0025  Score=59.71  Aligned_cols=108  Identities=17%  Similarity=0.147  Sum_probs=81.0

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ..|......+++++|+..++++..+....  ......+.+...++.+|... |++++|+++++++++.|+.--  .....
T Consensus        79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a  154 (282)
T PF14938_consen   79 EEAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSA  154 (282)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhH
Confidence            34455556669999999999998876431  22334578889999999998 999999999999999998542  33334


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      ...+.++|.++..+|+|++|++.|++.......
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            567779999999999999999999998875543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.33  E-value=0.0029  Score=65.91  Aligned_cols=93  Identities=18%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..+++++.+        ++....++..++.++..+|++++|+.+++++++.     .|.++   
T Consensus       336 ~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---  399 (615)
T TIGR00990       336 LRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP---  399 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---
Confidence            3444556789999999999988764        2334556778899999999999999999998764     34454   


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..++.+|.++...|++++|+..+++|+++
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            45788999999999999999999999875

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.32  E-value=0.0069  Score=50.55  Aligned_cols=124  Identities=20%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc--------------cccHHHHHHHHHHHHHhhhhHHHHHHHH
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------------SVNLMQTREKLIKILMELEDWKEALAYC  285 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~--------------h~~l~~~~~~La~~~~~~g~~~~Al~~~  285 (368)
                      +..+...+......|+...++..+++++.+.+.-+-+.              +...+.+...++..+...|++++|+.++
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34444455555566788888888888888765432222              1122345566777778889999999999


Q ss_pred             HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC-CchHHHHHHH
Q 017649          286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILK  351 (368)
Q Consensus       286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~-hp~~~~l~~~  351 (368)
                      ++++...        |.--..+..+-.++...|+..+|+..|++..+.+...+|-+ +|.+..+...
T Consensus        86 ~~~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~  144 (146)
T PF03704_consen   86 QRALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE  144 (146)
T ss_dssp             HHHHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred             HHHHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence            9988632        22223445566778899999999999999999999999976 4455555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.32  E-value=0.00091  Score=65.49  Aligned_cols=72  Identities=15%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          257 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       257 ~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .++....++.+++.+|..+|+|++|+..+++++++     .|+++.....++++|.+|..+|++++|+..|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            36677788999999999999999999999999985     4677776678999999999999999999999999996

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.29  E-value=0.0021  Score=50.89  Aligned_cols=84  Identities=17%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                      ++...++..+...|++++|++++.+++..     .|.++.....++.+|.++...|++.+|+.++++++...     |++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            34567888899999999999999988753     24666667788999999999999999999999998643     566


Q ss_pred             chHHHHHHHHHHHH
Q 017649          343 PFMKELILKLEEAQ  356 (368)
Q Consensus       343 p~~~~l~~~L~~~~  356 (368)
                      +.+..+...+..+.
T Consensus        73 ~~~~~~~~~~~~~~   86 (119)
T TIGR02795        73 PKAPDALLKLGMSL   86 (119)
T ss_pred             CcccHHHHHHHHHH
Confidence            55545455544443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.28  E-value=0.0017  Score=55.79  Aligned_cols=68  Identities=15%  Similarity=-0.024  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      -...+..++.++...|++++|+..+++++.+.     +.++..+..+.++|.++...|++++|+..+++|+.+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34566778889999999999999999998762     456677789999999999999999999999999987

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.25  E-value=0.0081  Score=53.27  Aligned_cols=112  Identities=7%  Similarity=0.017  Sum_probs=79.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH-Hhhhh--HHHHHHHHHhhhhhHHhhcCCCC
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~-~~~g~--~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ...+..+...|++++|+..+++++++     .|+++   .++..++.++ ...|+  .++|.+.+++++..     .|.+
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~---~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~  143 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQL-----RGENA---ELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE  143 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC
Confidence            34455677889999999999988764     35444   4456778764 56677  58999998888862     2444


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      +   ..++.+|..+...|++++|+.+++++++..    +++.+...-+ ..++.++
T Consensus       144 ~---~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~----~~~~~r~~~i-~~i~~a~  191 (198)
T PRK10370        144 V---TALMLLASDAFMQADYAQAIELWQKVLDLN----SPRVNRTQLV-ESINMAK  191 (198)
T ss_pred             h---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCccHHHHH-HHHHHHH
Confidence            4   567999999999999999999999998754    3444443333 5554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.21  E-value=0.0075  Score=58.62  Aligned_cols=96  Identities=14%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-hHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLL  303 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h-p~~  303 (368)
                      -.+......|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++.     .|... ...
T Consensus        40 ~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~  106 (389)
T PRK11788         40 FKGLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQR  106 (389)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHH
Confidence            3344455667777787777776653     2332   34566677777777888888777776654     12222 223


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..+|.++...|++++|+.++.++++.
T Consensus       107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  136 (389)
T PRK11788        107 LLALQELGQDYLKAGLLDRAEELFLQLVDE  136 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence            456677777777777777777777777653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.21  E-value=0.013  Score=53.23  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+.+++......|++.+|++.++.+..     -||..+..-++.-.++.++...+++++|+.+..+.+.    .| |.|
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~----ly-P~~  104 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR----LY-PTH  104 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hC-CCC
Confidence            3466667777788999999999988763     4777777788888999999999999999998777665    33 588


Q ss_pred             hHHHHHHhhhhhHhhhc-----CChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649          301 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  361 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~-----g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~  361 (368)
                      |.....++-.|..+...     .+...+...+....+.+.+-  |+++++.+...++..+...|-.
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~  168 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAG  168 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHH
Confidence            99888888887776543     23344455555555555555  7888998888888776654443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.18  E-value=0.0087  Score=58.17  Aligned_cols=94  Identities=12%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC-CChHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHPLLGL  305 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~-~hp~~~~  305 (368)
                      +..+...|++++|+..+++++..        ++....++..++.++...|+|++|++.+++++...    |. .+...+.
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~  181 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAH  181 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHH
Confidence            33444555555555555554332        11122334455555555555555555555444321    11 1112233


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .+..+|.++...|++++|+.+++++++
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~  208 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALA  208 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            344455555555555555555555544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.16  E-value=0.011  Score=50.33  Aligned_cols=107  Identities=9%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~  298 (368)
                      .+..+...|-.+..+|++++|..+|+-+-     ++.+.++..   ...|+.++..+++|++|+..+..+...     ..
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~  102 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTL-----LK  102 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc-----cc
Confidence            55667778888999999999999987543     355555544   467999999999999999988776543     23


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      ++|..   .+..|.-+..+|+..+|+..|+.|++      .++|+.+++
T Consensus       103 ~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~  142 (165)
T PRK15331        103 NDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRA  142 (165)
T ss_pred             CCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHH
Confidence            44432   57789999999999999999999988      355655544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.16  E-value=0.0039  Score=53.76  Aligned_cols=71  Identities=13%  Similarity=0.043  Sum_probs=60.5

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ++.-...+..++..+...|++++|+.++++++...     +.++..+..+..+|.++..+|++++|+..+.+|+++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44556678889999999999999999999998753     344455678899999999999999999999999986

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.16  E-value=0.0057  Score=64.21  Aligned_cols=96  Identities=10%  Similarity=-0.026  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+...|....+.|.+++|..+++.++.+        .|....++.+++.++...+++++|+..+++++..        .
T Consensus        87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~  150 (694)
T PRK15179         87 LFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------G  150 (694)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------C
Confidence            33444556667778888888888777653        2334455667777777777777777776666542        2


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      |.-+..++.+|.++..+|++++|+..|++++.
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            33334556666666667777777777766664

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.14  E-value=0.0017  Score=46.22  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      ..|..+...|++++|+..++.+++.        ++.-..++..++.++..+|++++|+.+++++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3466678899999999999988653        2445667888999999999999999999998864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.08  E-value=0.0097  Score=62.51  Aligned_cols=116  Identities=12%  Similarity=0.034  Sum_probs=75.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|+..+++++.+     .|.++   .+...++.++...|++++|+..+++++..     .|.++ 
T Consensus       287 ~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~-----~P~~~-  352 (656)
T PRK15174        287 VTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE-----KGVTS-  352 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cccch-
Confidence            344566667778888888888777653     34443   34566888888888888888887776652     23332 


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                        .....+|.++...|++++|+..|++++++--..+.   +.+.+....+.+...
T Consensus       353 --~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~  402 (656)
T PRK15174        353 --KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQIS  402 (656)
T ss_pred             --HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHH
Confidence              33445577788888888888888888876544432   223344445544433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.08  E-value=0.0087  Score=65.32  Aligned_cols=93  Identities=12%  Similarity=0.016  Sum_probs=61.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|+..+++++.+     .|+++   .++.+++.++...|++++|++++++++..     .|+++   .
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~---~  678 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDP---A  678 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---H
Confidence            344455556666666666665543     34443   45667777777777777777777777652     23444   4


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .++++|.++..+|++++|+..+++|+++-
T Consensus       679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        679 LIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56788888888888888888888887644

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.00  E-value=0.0054  Score=64.42  Aligned_cols=99  Identities=9%  Similarity=-0.077  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .+...+.+..+...+++++|+..+++++..        .+.-...+..++.++..+|++++|.+++++++.        .
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~  183 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------Q  183 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------c
Confidence            345566777888889999999998887753        344456678899999999999999999998875        3


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ||.-...+..+|.++...|+.++|...|++|++..
T Consensus       184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            45555677889999999999999999999999753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.99  E-value=0.0061  Score=43.73  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV  291 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~  291 (368)
                      .....+..+...|++++|+..+++++..     .|++   ..++.+++.++..+| ++++|+++++++++.
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~---~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNN---AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTH---HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            3456677788999999999999998875     3444   457889999999999 899999999998864

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.98  E-value=0.027  Score=49.38  Aligned_cols=106  Identities=16%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      ..++..+......++..|+|++|.+.|..++.++-...-   -...-++.+-+.+.+.++.|+.|+.-|.++|++.    
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~----  164 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELN----  164 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC----
Confidence            345556666777888999999999999999887532111   1122345667778899999999999999999743    


Q ss_pred             CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                          |..-.++..=|.+|-...++++|+.-|++.+++
T Consensus       165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                445555667788999999999999999887763

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.97  E-value=0.0068  Score=64.56  Aligned_cols=103  Identities=18%  Similarity=0.042  Sum_probs=75.5

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh-----------
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV-----------  291 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~-----------  291 (368)
                      +...+..+..+|++++|+..+++++..     .|.   ...++..++.++...|+|++|+.++++++..           
T Consensus        25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~   96 (899)
T TIGR02917        25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPN---DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL   96 (899)
T ss_pred             HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence            455566677888999999888887753     233   3456777888899999999998888876542           


Q ss_pred             ----------------HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          292 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       292 ----------------~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                                      +....+...+..+..+..+|..+...|++++|+..|++++++
T Consensus        97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  154 (899)
T TIGR02917        97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI  154 (899)
T ss_pred             HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                            122223455666677788888888889999999998888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]

Probab=96.93  E-value=0.00058  Score=66.39  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             EEEccccc-cccCCCccCcEEE--EeCC------EEEEEEccCCCCCCeeEEeccCCCC
Q 017649           90 TGLYPVIS-IINHSCLPNAVLV--FEGR------LAVVRAVQHVPKGAEVLISYIETAG  139 (368)
Q Consensus        90 ~~lyp~~s-~~nHsC~PN~~~~--~~~~------~~~~~a~~~i~~geel~~~Y~~~~~  139 (368)
                      ...+...+ ++||||.||+.+.  |.+.      .+.+.|+++|++|+|+|..|+....
T Consensus       266 a~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~  324 (364)
T KOG1082|consen  266 AKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK  324 (364)
T ss_pred             hhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence            34445544 7799999999775  3332      4688999999999999999997765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.91  E-value=0.0026  Score=45.55  Aligned_cols=66  Identities=12%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             HhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          273 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      +..|+|++|++++++++...     |.++   ...+.+|.++...|++++|...+.++..     ..|++|.+..++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-----p~~~---~~~~~la~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-----PDNP---EARLLLAQCYLKQGQYDEAEELLERLLK-----QDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-----TTSH---HHHHHHHHHHHHTT-HHHHHHHHHCCHG-----GGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCcCHHHHHHHHhc
Confidence            56799999999999988642     2333   4457899999999999999999888775     23445666665544

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.85  E-value=0.015  Score=61.05  Aligned_cols=93  Identities=11%  Similarity=0.078  Sum_probs=69.2

Q ss_pred             HHHHHhhhcCChHH----HHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          225 KKTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       225 ~~a~~~~~~g~~~e----A~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+..+...|++++    |+..+++++..     .|+   ...++..++.++...|++++|+.++++++..     .|.+
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~  317 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDL  317 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC
Confidence            34555667778775    67777776653     243   3466778899999999999999998888863     3444


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +   .....+|.++...|++++|+..+++++..
T Consensus       318 ~---~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        318 P---YVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             H---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4   44667899999999999999999888874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.82  E-value=0.01  Score=56.99  Aligned_cols=95  Identities=15%  Similarity=0.164  Sum_probs=73.6

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|...+++++.+     .|.+   ..+...++.++...|++++|+.++++.+.....    .......
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~  187 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGH  187 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHH
Confidence            344556889999999999988764     3434   345677899999999999999999998875532    2222345


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .+..+|.++..+|++++|+..++++..
T Consensus       188 ~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         188 NWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            677899999999999999999999853

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.036  Score=51.97  Aligned_cols=133  Identities=14%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-  297 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-  297 (368)
                      .+..+.+.+..++..|=++.|..+|..+...        -..--.++..|..+|-...+|++|++..++....    -| 
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q  173 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQ  173 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCc
Confidence            4455666677777777777777776654331        1123457788888998889999998887765532    22 


Q ss_pred             CCChHHHHHHhhhhhHhhhcCChHHHHH---------------------------HHHHHHHhhccccCCCCchHHHHHH
Q 017649          298 QFHPLLGLQYYTCGKLEWFLGDTENAIK---------------------------SMTEAVEILRITHGTNSPFMKELIL  350 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~---------------------------~l~kAl~i~~~~~G~~hp~~~~l~~  350 (368)
                      ++...++.-+=+||..+....+.+.|+.                           .+.+|++.++...-.++.++.++..
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence            3344455555555554443333333333                           3444555556666678889999999


Q ss_pred             HHHHHHHHHhhhh
Q 017649          351 KLEEAQAEASYKL  363 (368)
Q Consensus       351 ~L~~~~~el~~~~  363 (368)
                      +|..+..++.+..
T Consensus       254 ~L~~~Y~~lg~~~  266 (389)
T COG2956         254 MLYECYAQLGKPA  266 (389)
T ss_pred             HHHHHHHHhCCHH
Confidence            9999988776543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.74  E-value=0.024  Score=61.70  Aligned_cols=109  Identities=10%  Similarity=0.099  Sum_probs=87.9

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      +......|++++|...+++++..... .++.+. ...+...++.++...|++++|..+++++++..+...++.++..+..
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~-~g~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  575 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQ-HDVYHY-ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL  575 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhh-hcchHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            33456788999999999888876554 333333 3456788999999999999999999999999888766677766666


Q ss_pred             HhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          307 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      +..+|.+++..|++++|...+.+++.+.+..
T Consensus       576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence            7788999999999999999999999987743

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.66  E-value=0.0092  Score=53.32  Aligned_cols=95  Identities=13%  Similarity=0.047  Sum_probs=76.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .|..+...|..+.|.+.|++++.+     +|.+   ..+++|-+.-+..+|++++|..++++++.      -|.-+....
T Consensus        75 ~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~  140 (250)
T COG3063          75 RAHYYQKLGENDLADESYRKALSL-----APNN---GDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSD  140 (250)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHhc-----CCCc---cchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcch
Confidence            455567888889999999988764     4444   44577888888889999999999888775      456667777


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .+-|+|.....+|+...|+.+|++|+++.
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            88999999999999999999999998754

>PRK12370 invasion protein regulator; Provisional

Probab=96.65  E-value=0.026  Score=58.07  Aligned_cols=91  Identities=15%  Similarity=0.012  Sum_probs=55.4

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|+..+++++++     .|+++   .++..++.++...|++++|+.++++++..     .|.++..  
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~~~--  408 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLL-----SPISA---DIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTRAAA--  408 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChhh--
Confidence            344455667788888887777653     34443   34566777788888888888887777653     2333322  


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                       .+.++.++...|++++|+..+++++.
T Consensus       409 -~~~~~~~~~~~g~~eeA~~~~~~~l~  434 (553)
T PRK12370        409 -GITKLWITYYHTGIDDAIRLGDELRS  434 (553)
T ss_pred             -HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence             12233344456677777776666653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.027  Score=56.23  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=78.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      .+..+.|.+|...++.++.....++ +..+...-+..+|+.+|..++.+++|+.++++++...        |.-...+-.
T Consensus       424 ay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~as  494 (611)
T KOG1173|consen  424 AYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHAS  494 (611)
T ss_pred             eehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHH
Confidence            3345578899999988875443333 3333556678899999999999999999999998632        222344567


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  350 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~  350 (368)
                      +|-++..+|.++.|+++|.||+.+     -|+...+.+++.
T Consensus       495 ig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~  530 (611)
T KOG1173|consen  495 IGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence            788899999999999999999964     345555555443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.61  E-value=0.026  Score=45.79  Aligned_cols=64  Identities=16%  Similarity=0.013  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      +...++.++-.+|+.++|+.++++++.     .|...+...-.+..+|..+..+|++++|+..+++++.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456788889999999999999999987     4666666677888999999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=96.59  E-value=0.0089  Score=61.50  Aligned_cols=84  Identities=12%  Similarity=0.042  Sum_probs=66.3

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhH
Q 017649          234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  313 (368)
Q Consensus       234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l  313 (368)
                      +++++|...+++++++     .|+++   .++..++.++...|++++|+.++++++..     .|+++.   .++.+|.+
T Consensus       318 ~~~~~A~~~~~~Al~l-----dP~~~---~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~  381 (553)
T PRK12370        318 NAMIKAKEHAIKATEL-----DHNNP---QALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWN  381 (553)
T ss_pred             hHHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH
Confidence            3467777777776653     45444   45667888999999999999999999873     455554   56888999


Q ss_pred             hhhcCChHHHHHHHHHHHHh
Q 017649          314 EWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       314 ~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +...|++++|+..+++|+++
T Consensus       382 l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999999875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.56  E-value=0.058  Score=52.16  Aligned_cols=129  Identities=16%  Similarity=0.044  Sum_probs=98.1

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      ..-.|+++.|++.|+..+.+... ++.. ..-++.-+.|+..|.-+.++.+|+.|..+-+.+.+.+-  +-.--+-+++.
T Consensus       245 hiflg~fe~A~ehYK~tl~LAie-lg~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwS  320 (639)
T KOG1130|consen  245 HIFLGNFELAIEHYKLTLNLAIE-LGNR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWS  320 (639)
T ss_pred             hhhhcccHhHHHHHHHHHHHHHH-hcch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHH
Confidence            34457899999999988776433 3332 23356678899999999999999999999888877552  22234568899


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhhc
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS  364 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~~  364 (368)
                      ||..+..+|..+.|+.+.++++++......+.-..|  ...+|.+..+++.++.|
T Consensus       321 Lgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT--ar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  321 LGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT--ARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh--hhhhhHHHHHHhCCCcc
Confidence            999999999999999999999998887765554443  24467778888888776

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.53  E-value=0.031  Score=61.08  Aligned_cols=94  Identities=11%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      ..|++++|+..+++++..     .|   . ..++.+++.++..+|++++|+..+++++..     .|+++   ..++++|
T Consensus       588 ~~Gr~~eAl~~~~~AL~l-----~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG  650 (987)
T PRK09782        588 IPGQPELALNDLTRSLNI-----AP---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALG  650 (987)
T ss_pred             hCCCHHHHHHHHHHHHHh-----CC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Confidence            447888888888777653     23   2 456778899999999999999999888763     34555   5678999


Q ss_pred             hHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          312 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      .++...|++++|+..+++|+++     .|+++....
T Consensus       651 ~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~  681 (987)
T PRK09782        651 YALWDSGDIAQSREMLERAHKG-----LPDDPALIR  681 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            9999999999999999999874     566664443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.40  E-value=0.16  Score=40.90  Aligned_cols=113  Identities=16%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-----cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-----NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-----~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .+++....|-|++|..-++++....+.+ ++.-.     .=.-++..|+.++..+|+|++++.-..+++-.+.+. |.-|
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srti-P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL~   92 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTI-PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GELH   92 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS--TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccC-ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-cccc
Confidence            4555667788999999999988875443 33211     123356678899999999999999999888776554 6677


Q ss_pred             hHHHHH----HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCC
Q 017649          301 PLLGLQ----YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  340 (368)
Q Consensus       301 p~~~~~----l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~  340 (368)
                      -.-|..    .++=|..+..+|+.++|++.|+.|-+.+.-.-|.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            666543    3455777888999999999999999987665553

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.37  E-value=0.03  Score=62.75  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-----------HHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-----------MQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l-----------~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      ....+..+...|++++|+..++++++..     |.+...           ......++.++...|++++|+.++++++..
T Consensus       306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        306 LGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455667778899999999999987653     222211           112234577788899999999999999875


Q ss_pred             HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          292 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       292 ~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                          . |.+   ...++.||.++..+|++++|+..|++|+++
T Consensus       381 ----~-P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        381 ----D-NTD---SYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             ----C-CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                2 233   356788999999999999999999999975

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]

Probab=96.36  E-value=0.0018  Score=66.47  Aligned_cols=56  Identities=29%  Similarity=0.438  Sum_probs=40.6

Q ss_pred             cccccCCCccCcEE--EEeCC------EEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeecc
Q 017649           96 ISIINHSCLPNAVL--VFEGR------LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP  159 (368)
Q Consensus        96 ~s~~nHsC~PN~~~--~~~~~------~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~  159 (368)
                      +.++||||+||..+  +|.+.      .+.+.+.+-|++|+|||-.|........        .+-..|.|.
T Consensus      1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~--------~keL~C~CG 1253 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVA--------TKELTCHCG 1253 (1262)
T ss_pred             hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccc--------cceEEEecC
Confidence            35789999999976  45432      3567789999999999999975543332        334678774

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=96.35  E-value=0.0028  Score=66.88  Aligned_cols=39  Identities=36%  Similarity=0.609  Sum_probs=32.1

Q ss_pred             ccccCCCccCcEE---EEeC-CEEEEEEccCCCCCCeeEEecc
Q 017649           97 SIINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYI  135 (368)
Q Consensus        97 s~~nHsC~PN~~~---~~~~-~~~~~~a~~~i~~geel~~~Y~  135 (368)
                      -.+||||.|||..   ..+| -++.|.|+|||++||||+..|-
T Consensus      1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred             cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecc
Confidence            3669999999954   3344 3788999999999999999983

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.33  E-value=0.011  Score=42.12  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=42.5

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  292 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~  292 (368)
                      ...|++++|+..+++++..     .|++   ..++..++.+|...|++++|..++.+++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-----NPDN---PEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-----TTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4678999999999998764     3433   4556789999999999999999998887643

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.28  E-value=0.055  Score=57.61  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIP  290 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~  290 (368)
                      .+...++.+|...|++++|+.+++++++
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4455666666667777777776666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.20  E-value=0.018  Score=55.56  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      +--|+|++|+...+.-+.+.+. +|. ....-++..+|+.+++-+|+|+.|.+++++++.....+  .+-.+-+...|.|
T Consensus       206 YlLGdf~~ai~~H~~RL~ia~e-fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSL  281 (639)
T KOG1130|consen  206 YLLGDFDQAIHFHKLRLEIAQE-FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSL  281 (639)
T ss_pred             eeeccHHHHHHHHHHHHHHHHH-hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHh
Confidence            3447899999888776666433 443 33445778899999999999999999999998766544  3445567888999


Q ss_pred             hhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          311 GKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      |..|.-+.+++.|+.|..+-+.|.+
T Consensus       282 gNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  282 GNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999777654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.17  E-value=0.042  Score=50.94  Aligned_cols=84  Identities=14%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             HHHHHHH-HHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc
Q 017649          265 REKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  343 (368)
Q Consensus       265 ~~~La~~-~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp  343 (368)
                      ....+.. +...|+|++|+..++..+..+     |+++.....++.+|.++...|++++|+..|++++..+     |+||
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~  214 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSP  214 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCc
Confidence            3344443 356799999999988887655     4677777889999999999999999999999988644     6788


Q ss_pred             hHHHHHHHHHHHHHH
Q 017649          344 FMKELILKLEEAQAE  358 (368)
Q Consensus       344 ~~~~l~~~L~~~~~e  358 (368)
                      ...+.+-++..+..+
T Consensus       215 ~~~dAl~klg~~~~~  229 (263)
T PRK10803        215 KAADAMFKVGVIMQD  229 (263)
T ss_pred             chhHHHHHHHHHHHH
Confidence            888877777665543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.079  Score=51.23  Aligned_cols=123  Identities=12%  Similarity=0.145  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      ..++..-+.+...+.+|++.+|-+.|..++.+     .|+|. ....++.+.+.+...+|+..+|+.-|..++.+     
T Consensus       247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-----  316 (486)
T KOG0550|consen  247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-----  316 (486)
T ss_pred             HHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-----
Confidence            34445556677788999999999999888764     45555 44577889999999999999999999998864     


Q ss_pred             CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                         .+.+...+..-|..+..++++++|+..+++|++.-.-  -..+..+++....|...
T Consensus       317 ---D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  317 ---DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKS  370 (486)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHh
Confidence               4677788888899999999999999999999985443  22344455555555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.14  E-value=0.094  Score=56.20  Aligned_cols=94  Identities=15%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....|..+...|++++|+..+++++..     .|.++.   +...++.++...|++++|+.++++++..     .|.++.
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~~---a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~  118 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQNDD---YQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN  118 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH
Confidence            344556677889999999999988764     344433   3457888999999999999999888764     244444


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                          ++.+|.++...|++++|+..+++|+++
T Consensus       119 ----~~~la~~l~~~g~~~~Al~~l~~al~~  145 (765)
T PRK10049        119 ----LLALAYVYKRAGRHWDELRAMTQALPR  145 (765)
T ss_pred             ----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                677899999999999999999998873

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.12  E-value=0.048  Score=49.57  Aligned_cols=91  Identities=20%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+...+..|++.+|+..++++..     +.|++.   ++++.++.+|...|++++|-.-+.++++..     +..|..  
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~-----l~p~d~---~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~~--  170 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAAR-----LAPTDW---EAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPSI--  170 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhc-----cCCCCh---hhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCchh--
Confidence            34456788999999999888754     345454   457789999999999999998888888743     455644  


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                       +.|||.++.-.|+++.|++++.+|..
T Consensus       171 -~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         171 -ANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             -hhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence             58999999999999999999998763

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.06  E-value=0.037  Score=62.07  Aligned_cols=56  Identities=16%  Similarity=0.068  Sum_probs=32.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      .+..+...|++++|+..+++++..     .|.++   .++..++.+|...|++++|++++++++
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~-----~P~~~---~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTR-----EPGNA---DARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            344455666777777777666543     23332   345566666666666666666655443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.01  E-value=0.0046  Score=62.55  Aligned_cols=62  Identities=15%  Similarity=0.179  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .+++.|+.+|.+++.++.|.-++++++++        .|.=.+.+-.+|.++...|+.++|+.++++|..
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            45666666666777777776666666653        233334455667777777777777777777764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.00  E-value=0.045  Score=50.91  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ...|......|+.++|+..++++++.     .|.++.+   +..++.+++..|+++++.+.........     +.+|.+
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~  216 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL  216 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH
Confidence            34555567889999999999998874     4555554   5668888899999998766655544332     344433


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  346 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~  346 (368)
                         +..+|.++..+|++++|+.++++++.     ..|++|.+.
T Consensus       217 ---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~  251 (280)
T PF13429_consen  217 ---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWL  251 (280)
T ss_dssp             ---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHH
T ss_pred             ---HHHHHHHhcccccccccccccccccc-----ccccccccc
Confidence               35678889999999999999999875     355666553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.97  E-value=0.049  Score=58.41  Aligned_cols=94  Identities=7%  Similarity=0.002  Sum_probs=50.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ..+.+.....+|++++|+..++++++.     .|.++..+.   .++.++...|++++|+.++++++      .|.  |.
T Consensus        37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~------~p~--n~  100 (822)
T PRK14574         37 QYDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ------SSM--NI  100 (822)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc------cCC--CC
Confidence            344445556778888887777776653     233321111   45555555666666666666555      111  11


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      -...+..+|.++...|++.+|+..|+++++
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~  130 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLK  130 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            112233345566666666666666666554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.97  E-value=0.02  Score=57.26  Aligned_cols=95  Identities=19%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      ...|+|+.|++-|+.++.     ..|++..   +.+.|+..+....+.++|+.-|+++++..        |...-..++|
T Consensus       441 ~ls~efdraiDcf~~AL~-----v~Pnd~~---lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNl  504 (579)
T KOG1125|consen  441 NLSGEFDRAVDCFEAALQ-----VKPNDYL---LWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNL  504 (579)
T ss_pred             hcchHHHHHHHHHHHHHh-----cCCchHH---HHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhh
Confidence            345688888888887764     3455554   47889999999899999999999998744        3344456999


Q ss_pred             hhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649          311 GKLEWFLGDTENAIKSMTEAVEILRITHGTN  341 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~  341 (368)
                      |..+.++|-|.||+++|-.|+.+-+...+..
T Consensus       505 gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~  535 (579)
T KOG1125|consen  505 GISCMNLGAYKEAVKHLLEALSMQRKSRNHN  535 (579)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence            9999999999999999999999999976644

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.94  E-value=0.085  Score=49.56  Aligned_cols=96  Identities=10%  Similarity=0.039  Sum_probs=72.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ..+.|.......+++.|..++++++..        ++...++--.++.+....|+|++|++.++.+++       .++--
T Consensus       183 yCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~y  247 (389)
T COG2956         183 YCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE-------QNPEY  247 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHH
Confidence            344555666667888888888887653        344455556688899999999999776655543       45555


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ++..+-.|...|..+|+.++++.++.++.+.
T Consensus       248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            6677788888999999999999999998863

>KOG1337 consensus N-methyltransferase [General function prediction only]

Probab=95.94  E-value=0.0095  Score=60.06  Aligned_cols=88  Identities=22%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             CHHHHHHHHhhhhccccccccCC-----CCceeEEEccccccccCCCccCcEEEE-eCCEEEEEEccCCCCCCeeEEecc
Q 017649           62 SINEIAENFSKLACNAHTICNSE-----LRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQHVPKGAEVLISYI  135 (368)
Q Consensus        62 ~~~~~~~~~~~~~~N~~~i~~~~-----~~~~g~~lyp~~s~~nHsC~PN~~~~~-~~~~~~~~a~~~i~~geel~~~Y~  135 (368)
                      +-+...-.++.+.+.+|......     ...--.++.|.+-++||+|.+.....+ .+..+.+++.++|.+|+||+|+|+
T Consensus       198 ~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG  277 (472)
T KOG1337|consen  198 TFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYG  277 (472)
T ss_pred             chHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecC
Confidence            33445566666777777654331     112347889999999999999333332 234789999999999999999999


Q ss_pred             CCCCCHHHHHHHHhcCCCeE
Q 017649          136 ETAGSTMTRQKALKEQYLFT  155 (368)
Q Consensus       136 ~~~~~~~~R~~~L~~~~~F~  155 (368)
                      +...      ..|...|||.
T Consensus       278 ~~~N------~eLL~~YGFv  291 (472)
T KOG1337|consen  278 PKSN------AELLLHYGFV  291 (472)
T ss_pred             CCch------HHHHHhcCCC
Confidence            9433      4567799997

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.92  E-value=0.11  Score=56.51  Aligned_cols=110  Identities=15%  Similarity=0.019  Sum_probs=83.5

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+......|++++|...+.+++......-++.++....+...++.++...|++++|...+++++...+...+   ....
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---~~~~  612 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---QQQL  612 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---hHHH
Confidence            3455567889999999999998887655433333333344556788888899999999999999998774432   2344


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ..+..+|.++...|++++|...+.++..+....
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            566789999999999999999999998876553

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.19  Score=50.68  Aligned_cols=124  Identities=19%  Similarity=0.143  Sum_probs=79.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh-------------
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV-------------  291 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~-------------  291 (368)
                      ++|=-.+..++.++|+..+.        .+.+....++   .-=|+++..+|+|++|++.|+.++..             
T Consensus        84 EKAYc~Yrlnk~Dealk~~~--------~~~~~~~~ll---~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl  152 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLK--------GLDRLDDKLL---ELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL  152 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHh--------cccccchHHH---HHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            33333445555666655544        2233333333   33567788889999999988876311             


Q ss_pred             ----------HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649          292 ----------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  359 (368)
Q Consensus       292 ----------~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el  359 (368)
                                .....|...-..--.+||.|.++...|+|.+|++.|++|++|.+.++-.+..--.++...|.-+.-++
T Consensus       153 ~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl  230 (652)
T KOG2376|consen  153 LAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL  230 (652)
T ss_pred             HHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence                      11222222222445789999999999999999999999999999887766555555666665554333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.83  E-value=0.1  Score=37.74  Aligned_cols=62  Identities=26%  Similarity=0.385  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ...++..+...|++++|+.++++++...    | .++   ..++.+|.++...|++++|++.+.+++.+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   64 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD----P-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD   64 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC----C-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4568888999999999999998887642    2 333   567889999999999999999999998853

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.80  E-value=0.031  Score=59.03  Aligned_cols=92  Identities=11%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      +..+...|++.+|..++.++.+....        ...+.-|||.+|..+|+|..|+++++..+.   +.|+.+.+.+   
T Consensus       653 giVLA~kg~~~~A~dIFsqVrEa~~~--------~~dv~lNlah~~~e~~qy~~AIqmYe~~lk---kf~~~~~~~v---  718 (1018)
T KOG2002|consen  653 GIVLAEKGRFSEARDIFSQVREATSD--------FEDVWLNLAHCYVEQGQYRLAIQMYENCLK---KFYKKNRSEV---  718 (1018)
T ss_pred             hhhhhhccCchHHHHHHHHHHHHHhh--------CCceeeeHHHHHHHHHHHHHHHHHHHHHHH---HhcccCCHHH---
Confidence            44566778899999999888664321        223466899999999999999999988775   5566666655   


Q ss_pred             HhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          307 YYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       307 l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      +..||+++...|++.+|..++.+|..
T Consensus       719 l~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  719 LHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            56789999999999999999988875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.12  Score=51.48  Aligned_cols=109  Identities=24%  Similarity=0.209  Sum_probs=82.4

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      .++....++.|+|+.|+..|-.++.+    -+++|+.    +.+=..+|..+|+|.+|+.=..+.++        ..|.-
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l----~p~nhvl----ySnrsaa~a~~~~~~~al~da~k~~~--------l~p~w   69 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIML----SPTNHVL----YSNRSAAYASLGSYEKALKDATKTRR--------LNPDW   69 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHcc----CCCccch----hcchHHHHHHHhhHHHHHHHHHHHHh--------cCCch
Confidence            34555678999999999999877643    3444543    23455678899999999987777665        34777


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      +..|+.+|..+..+|++++|+..|.+.++.        .|....+...|.++.
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAY  114 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhh
Confidence            788999999999999999999999998862        344556666666665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.23  Score=49.56  Aligned_cols=109  Identities=19%  Similarity=0.172  Sum_probs=85.1

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..++..|+|.+|+..|-+++..        +|.-..++.|.|-+|..+|.+..|+.-|+..++.        +|...
T Consensus       363 ~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~  426 (539)
T KOG0548|consen  363 EKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFI  426 (539)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHH
Confidence            4456678889999999999886653        2444556788999999999999999999988875        77777


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      ..+..-|.++..+.+|.+|+..|++|++.=        |.-.++...+..+.+
T Consensus       427 kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  427 KAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHH
Confidence            778888999999999999999999988632        555555555555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.046  Score=54.67  Aligned_cols=70  Identities=21%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      ++.++-+....+.|.+|..+++.++...+.+.+.- +.-.-.+.+||-++..++++++|+.++++|+..-.
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            34456566667899999999999998777776632 23333558999999999999999999999996443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.65  E-value=0.018  Score=35.90  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=25.4

Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      ++.+||.++..+|++++|+.+|++|+.+-.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            367899999999999999999999986543

>TIGR00540 hemY_coli hemY protein

Probab=95.64  E-value=0.079  Score=52.32  Aligned_cols=72  Identities=11%  Similarity=-0.041  Sum_probs=53.0

Q ss_pred             CCccccHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          255 HPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       255 ~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~--~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      +|+++. ...++.++.++...|+|++|.+++++  +++.     .|++..    +..+|.+++.+|+.++|..++++++.
T Consensus       329 ~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~~----~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 VDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAND----LAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566664 45677889999999999999998884  4432     222222    33779999999999999999999887


Q ss_pred             hhcc
Q 017649          333 ILRI  336 (368)
Q Consensus       333 i~~~  336 (368)
                      .+-.
T Consensus       399 ~~~~  402 (409)
T TIGR00540       399 LMLA  402 (409)
T ss_pred             HHhc
Confidence            6543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.63  E-value=0.17  Score=54.28  Aligned_cols=97  Identities=10%  Similarity=-0.072  Sum_probs=72.3

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhh---c-----ccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQK---K-----LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~---~-----~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .+...|++++|+..++.+....-   .     .-.|+ .....+...++.++...|++++|++.+++++..    . |.+
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----~-P~n  392 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN----A-PGN  392 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C-CCC
Confidence            34577899999999887765421   0     11122 223456678899999999999999998888754    2 344


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      +   ..++.+|.++...|++++|++.+++|+.+.
T Consensus       393 ~---~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        393 Q---GLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            4   467899999999999999999999998754

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.61  E-value=0.19  Score=47.33  Aligned_cols=95  Identities=15%  Similarity=0.007  Sum_probs=69.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+.+++++     .|++   ..++.+++.++...|++++|++.+++++..     .|.+|
T Consensus       100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~  166 (296)
T PRK11189        100 AYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTY---NYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP  166 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence            3455666778889999999999988764     3443   446788999999999999999999998863     35566


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+..+    .+....++.++|+..+.++...
T Consensus       167 ~~~~~~----~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        167 YRALWL----YLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHH----HHHHccCCHHHHHHHHHHHHhh
Confidence            432221    1233467899999999876643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.49  E-value=0.044  Score=50.99  Aligned_cols=94  Identities=21%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|+++++..+++......     |.++.+   ...++.++..+|+.++|+.++++++.     ..|.+|..  
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~--  250 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLW--  250 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHH--
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----cccccccc--
Confidence            4445677788888777766654432     445544   45689999999999999999999775     33566654  


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                       +..+|.++...|+.++|..++++|+.-++
T Consensus       251 -~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  251 -LLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             -HHHHHHHHT--------------------
T ss_pred             -ccccccccccccccccccccccccccccC
Confidence             56889999999999999999999987654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.49  E-value=0.85  Score=40.39  Aligned_cols=127  Identities=17%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-----------hhHHHHHHHHHhhhh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP  290 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-----------g~~~~Al~~~~~~l~  290 (368)
                      ..+..+......|++.+|+..+++.+.     .+|.|+.+-.+...++.++..+           +...+|+..++..+.
T Consensus        44 A~l~la~a~y~~~~y~~A~~~~~~fi~-----~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   44 AQLMLAYAYYKQGDYEEAIAAYERFIK-----LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH-----H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            445667778889999999999988765     4788998888888888876543           233466666666654


Q ss_pred             hHHhhcCCCChHHH--------------HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          291 VYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       291 ~~e~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                          .|| +++-..              ..-+.+|+.|...|.+..|+..++.+++-+     |+.+...+.+..|.+..
T Consensus       119 ----~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y  188 (203)
T PF13525_consen  119 ----RYP-NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAY  188 (203)
T ss_dssp             ----H-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHH
T ss_pred             ----HCc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence                444 333322              223344888888999999998888877643     45566777777777776


Q ss_pred             HHHhhhh
Q 017649          357 AEASYKL  363 (368)
Q Consensus       357 ~el~~~~  363 (368)
                      .++....
T Consensus       189 ~~l~~~~  195 (203)
T PF13525_consen  189 YKLGLKQ  195 (203)
T ss_dssp             HHTT-HH
T ss_pred             HHhCChH
Confidence            6655443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.44  E-value=0.044  Score=45.83  Aligned_cols=66  Identities=12%  Similarity=-0.004  Sum_probs=53.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      .++.++...|++++|+.++++++..        .|.-...++.+|.++..+|++++|+..|.+|+.+     .|+++..
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a   94 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEP   94 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHH
Confidence            5688889999999999999998753        2334466799999999999999999999999974     4555544

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]

Probab=95.43  E-value=0.0084  Score=54.71  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             cccccCCCccCcEEE---EeCC-EEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           96 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~---~~~~-~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      ..+||||=.+|+...   .+|. .+++.|.++|.+||||+-.|+|....
T Consensus       334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSke  382 (392)
T KOG1085|consen  334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKE  382 (392)
T ss_pred             hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchh
Confidence            358999999999653   3453 58999999999999999999997643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.42  E-value=0.087  Score=42.87  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .....++..+...|++++|.+++++++..     .+.+   ...+..+|.++..+|++.+|+..+++++.+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678889999999999999998887663     2333   456788999999999999999999999885

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.37  E-value=0.035  Score=34.59  Aligned_cols=30  Identities=17%  Similarity=0.362  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQ  293 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e  293 (368)
                      ++.+|+.+|..+|+|++|++++++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            357899999999999999999999886554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.34  E-value=0.032  Score=33.93  Aligned_cols=30  Identities=33%  Similarity=0.504  Sum_probs=26.4

Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ..++++|.++..+|++++|+..+++|+++-
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            468899999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.32  E-value=0.22  Score=44.02  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=66.6

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  312 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  312 (368)
                      .++.++++..+++.+..     .|.   -...+..|+.+|...|++++|+..+++++..     .|+++.   .+..+|.
T Consensus        52 ~~~~~~~i~~l~~~L~~-----~P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~---~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA-----NPQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAE---LYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHH
Confidence            34455666555555442     233   3557888999999999999999999988863     344444   4577788


Q ss_pred             Hh-hhcCC--hHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          313 LE-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       313 l~-~~~g~--~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      ++ ...|+  +++|...+.+|+.     ..|+++.....+
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~-----~dP~~~~al~~L  150 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALA-----LDANEVTALMLL  150 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHH-----hCCCChhHHHHH
Confidence            64 56677  5999999999987     355665554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.31  E-value=0.033  Score=33.66  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=26.1

Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ..++.+|.++..+|++++|+..+++|+.+-
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            457899999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.28  E-value=0.092  Score=51.84  Aligned_cols=101  Identities=22%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      |+.+..+++|++|++.|..+..+.. ..|--++..+-..+...-+..-.+++..|+.++++++++        .|.--.+
T Consensus       469 AeiLtDqqqFd~A~k~YD~ai~LE~-~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A  539 (606)
T KOG0547|consen  469 AEILTDQQQFDKAVKQYDKAIELEP-REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQA  539 (606)
T ss_pred             HHHHhhHHhHHHHHHHHHHHHhhcc-ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHH
Confidence            5567788899999999998887642 222223222222222111222238999999999999863        4555677


Q ss_pred             HhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          307 YYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      +-.||.+...+|+.++|+++++++...-+-
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999999876553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.17  E-value=0.2  Score=49.58  Aligned_cols=119  Identities=15%  Similarity=0.171  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      ......+-++...++.+|+|++|++.|..++.+.     |+.+..   +.|.+.+|..+|+|++-++.|.++++      
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF---YsNraAcY~~lgd~~~Vied~TkALE------  177 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF---YSNRAACYESLGDWEKVIEDCTKALE------  177 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhh------
Confidence            4556667778888999999999999999988753     222222   56789999999999999999999986      


Q ss_pred             CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC-chHHHHHHHH
Q 017649          297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILKL  352 (368)
Q Consensus       297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h-p~~~~l~~~L  352 (368)
                        ..|.....+++=|.++-.+|++.+|+.-+ .++-|++-.-+... |+....+.+.
T Consensus       178 --l~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~  231 (606)
T KOG0547|consen  178 --LNPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQ  231 (606)
T ss_pred             --cCcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHH
Confidence              45788888999999999999999997643 24455555544443 3333344443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.16  E-value=0.085  Score=51.97  Aligned_cols=66  Identities=14%  Similarity=0.042  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      ....+.+..+...|++++|+..+++++++     .|++.....++++++.+|..+|++++|++.++++++.
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34556677788999999999999998875     4666655567899999999999999999999999986

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.13  E-value=0.2  Score=45.23  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      ....++...+|..|+..|.+++.+        +|..+....+=+..++...+|+.+..-|+++++.        .|..+.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~vk   79 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNLVK   79 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHHHH
Confidence            334445555788888888777653        3333444566677888899999999999999873        466778


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ..+-||........+.+|++.|.+|++.++..
T Consensus        80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            88889999999999999999999999887643

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.09  E-value=0.37  Score=45.78  Aligned_cols=101  Identities=12%  Similarity=0.121  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh
Q 017649          216 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV  295 (368)
Q Consensus       216 ~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~  295 (368)
                      ++.....+-+....++.+|+|++|+.-|.+...     +.|+|+.+   ..+-|.+|..+..|..|..-|..++..-+..
T Consensus        93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen   93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            344444556677789999999999999987654     45666654   3456778999999999988888887644322


Q ss_pred             cCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          296 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       296 ~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                              ..+|..=|.+-..+|...||.+-++.+++
T Consensus       165 --------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  165 --------VKAYSRRMQARESLGNNMEAKKDCETVLA  193 (536)
T ss_pred             --------HHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence                    23344445555566777788777777765

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.05  E-value=0.19  Score=38.70  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             HhhhhHHHHHHHHHhhhhhHHhhcCCCC-hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          273 MELEDWKEALAYCQLTIPVYQRVYPQFH-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~h-p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ...|||..|++.+.+..+....-....+ ......+.++|.++...|.+++|+..+++|+++.+..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4568999999999998887765544442 2356778899999999999999999999999998876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.99  E-value=0.19  Score=36.11  Aligned_cols=63  Identities=14%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .+..++++++|++.+++++..     +|.++   ..+...+.++..+|+|.+|++.+.++++.     .|+++...
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~   66 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALEL-----DPDDP---ELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDAR   66 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHh-----Ccccc---hhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence            346788999999999888764     44444   44667899999999999999999998853     34555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.46  Score=46.80  Aligned_cols=90  Identities=21%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +-|+++.+   ...|+++|.++++.++|+..+.+++..-.        .-+..++.||+++-+++++++|..++++-++.
T Consensus       427 ~kPnDsRl---w~aLG~CY~kl~~~~eAiKCykrai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  427 LKPNDSRL---WVALGECYEKLNRLEEAIKCYKRAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             cCCCchHH---HHHHHHHHHHhccHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45666544   45689999999999999999888876332        14678999999999999999999999999998


Q ss_pred             hccccCCCCchHHHHHHHHHHH
Q 017649          334 LRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       334 ~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      .. .-|...|.+.....-|+.=
T Consensus       496 ~~-~eg~~~~~t~ka~~fLA~~  516 (559)
T KOG1155|consen  496 SE-LEGEIDDETIKARLFLAEY  516 (559)
T ss_pred             HH-hhcccchHHHHHHHHHHHH
Confidence            74 3477777777766666543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.85  E-value=0.43  Score=35.42  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      ..+++.-+++.+.+.++|+..+++++.....     ......+...|+.+|.+.|.|.+++++..+=+++.+..-
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445555667777889999999999876432     335677888899999999999999999888777776553

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=94.79  E-value=0.36  Score=50.87  Aligned_cols=100  Identities=18%  Similarity=0.096  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      ..+++.++..|..++..|++++|..++..+++.        ++....+...|+.+|...|+.++|+.....+-     .+
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-----HL  202 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-----HL  202 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-----hc
Confidence            345677888888889999999999999888764        23334567778888888888887766433221     22


Q ss_pred             CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      -|..+   -.+..+|.+...+|.+.+|+-.|.+|+.
T Consensus       203 ~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  203 NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            23333   2345556666666666666666666654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.71  E-value=0.47  Score=44.32  Aligned_cols=112  Identities=16%  Similarity=0.127  Sum_probs=78.5

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhhHHh------hcCCCChHH
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQR------VYPQFHPLL  303 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~~e~------~~g~~hp~~  303 (368)
                      ..+|+++.|..++.++........+..-..+....++++.-....+ +++.|..+.++++++++.      ..+......
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4678999999999988776543333334466778888888888888 999999999999999755      222233345


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      ...+..|+.++...+..+...+ -.++++.++..+|. ||.
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~  122 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPE  122 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcH
Confidence            6677788888887776654333 45566666667664 443

It is also involved in sporulation [].

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.69  E-value=0.057  Score=54.87  Aligned_cols=88  Identities=19%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      +.-+++++.|++.+++++.+        ++....++.-++.=+....+|++|..+++.++.+--+.|        .++|-
T Consensus       431 fSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYG  494 (638)
T KOG1126|consen  431 FSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYG  494 (638)
T ss_pred             hhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHh
Confidence            34467899999999888654        222334455567777778899999999999886543333        45678


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHh
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ||.+|..+++++.|+-+|++|++|
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcC
Confidence            889999999999888888887764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.61  E-value=0.065  Score=32.44  Aligned_cols=30  Identities=37%  Similarity=0.526  Sum_probs=27.2

Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ..++.+|.++..+|++++|..++++|+++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            467899999999999999999999999864

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.61  E-value=0.42  Score=47.25  Aligned_cols=93  Identities=17%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      +..|...+..|.+++|++.+..+++     ..|+|+.+..   ..+.+++..++.++|.+.+++++...    | +.|  
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~---~~~~i~~~~nk~~~A~e~~~kal~l~----P-~~~--  374 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLE---LAGDILLEANKAKEAIERLKKALALD----P-NSP--  374 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHhcC----C-Ccc--
Confidence            3445555666777777777666543     3577777654   46778999999999999999988632    3 334  


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                       +...++|..+...|++.+|+..+.+.+.
T Consensus       375 -~l~~~~a~all~~g~~~eai~~L~~~~~  402 (484)
T COG4783         375 -LLQLNLAQALLKGGKPQEAIRILNRYLF  402 (484)
T ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence             4457889999999999999998887664

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.40  E-value=1.2  Score=36.60  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      -++..+.+.|+.+.|++.|.+++.+.     |   ....++++-++++.-+|+-++|++-..++++..    |+--...-
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~-----P---~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtac  115 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLA-----P---ERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTAC  115 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhc-----c---cchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHH
Confidence            34555668899999999998887642     2   235678899999999999999999888888643    55544445


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+..=|.+|..+|+.+.|+.-|+.|.++
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            66777799999999999999999998864

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.24  E-value=0.93  Score=48.37  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=89.1

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc--ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h--~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+.|.-.+..|++.+|...+..++.....+..++.  ..-+.+.++|+.++-.+++++.|.+.|+.++.        .||
T Consensus       456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp  527 (1018)
T KOG2002|consen  456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHP  527 (1018)
T ss_pred             HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCc
Confidence            34555566778888998888888776443333332  22355689999999999999999999988875        678


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      .+.-.+..||......+...+|..++.+++++     ...+|....++..+.-.
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~  576 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLK  576 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHh
Confidence            88888888987777888999999999999874     34567777777655433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.11  E-value=0.36  Score=46.15  Aligned_cols=75  Identities=11%  Similarity=0.005  Sum_probs=60.0

Q ss_pred             cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+.++........++.++...|++++|...++++++.     .|.+   ...+..+|.++...|++++|+.++.+++..
T Consensus       106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            34566766777778888999999999999999998873     2333   456788899999999999999999999886


Q ss_pred             hcc
Q 017649          334 LRI  336 (368)
Q Consensus       334 ~~~  336 (368)
                      ...
T Consensus       178 ~~~  180 (355)
T cd05804         178 WDC  180 (355)
T ss_pred             cCC
Confidence            543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.00  E-value=0.66  Score=44.46  Aligned_cols=123  Identities=13%  Similarity=0.177  Sum_probs=86.5

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc-CCCChH-HHHHHh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFHPL-LGLQYY  308 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~-g~~hp~-~~~~l~  308 (368)
                      ..-+.|+++++.++.+.+.....-++  ..-+++.-.|+..+..+.|+++|+-+..+++++...+- +..|.- ....++
T Consensus       133 lgls~fq~~Lesfe~A~~~A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  133 LGLSVFQKALESFEKALRYAHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            34456777777777777654322111  11235566788999999999999999999999887664 555544 478899


Q ss_pred             hhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          309 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       309 ~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      .++..+..+|+..+|.++-++|.++.- .+|..- .....+.-+.++.+
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~klal-~~Gdra-~~arc~~~~aDIyR  257 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKLAL-QHGDRA-LQARCLLCFADIYR  257 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH-HhCChH-HHHHHHHHHHHHHH
Confidence            999999999999999999999998654 446543 33333344455543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.95  E-value=0.23  Score=42.14  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=58.7

Q ss_pred             ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcccc
Q 017649          259 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  338 (368)
Q Consensus       259 ~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~  338 (368)
                      ...+...+.++..+...|++++|..+++-+..        ..|.....+++||.++..+|++++|+..|.+|..+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            55677788899999999999999998776653        23444567899999999999999999999999863     


Q ss_pred             CCCCch
Q 017649          339 GTNSPF  344 (368)
Q Consensus       339 G~~hp~  344 (368)
                      .|++|.
T Consensus        99 ~~ddp~  104 (157)
T PRK15363         99 KIDAPQ  104 (157)
T ss_pred             CCCCch
Confidence            456653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.92  E-value=0.17  Score=50.86  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC-Ch---HHHHHHhhh
Q 017649          235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HP---LLGLQYYTC  310 (368)
Q Consensus       235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~-hp---~~~~~l~~L  310 (368)
                      +.++|++.|.+++.++        |...+++++|+..|+.+|.|++|++|+..+|.+-++-.... .|   ...+.+.++
T Consensus       479 ~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~  550 (579)
T KOG1125|consen  479 RSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL  550 (579)
T ss_pred             ccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence            6789999999998863        44678899999999999999999999999999988754422 22   345555555


Q ss_pred             hhHh
Q 017649          311 GKLE  314 (368)
Q Consensus       311 a~l~  314 (368)
                      +-+.
T Consensus       551 als~  554 (579)
T KOG1125|consen  551 ALSA  554 (579)
T ss_pred             HHHH
Confidence            4443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.86  E-value=0.15  Score=47.41  Aligned_cols=61  Identities=11%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  292 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~  292 (368)
                      -++|..+.+-|.++.|++-++.++.+        ++...+++..|+.+|..+|++++|++.++++|++.
T Consensus       119 cNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld  179 (304)
T KOG0553|consen  119 CNRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD  179 (304)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence            35777888889999999999888765        55667788899999999999999999999998743

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.85  E-value=0.89  Score=39.72  Aligned_cols=100  Identities=12%  Similarity=0.084  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ++..+..+..+.+-|++.||+..|++++.   .++.. +   ..++-.++++....+++.+|...++.+.+.-. -.-..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qals---G~fA~-d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~p  160 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALS---GIFAH-D---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSP  160 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhc---cccCC-C---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCC
Confidence            34455567778888999999999988764   23332 2   23345688899999999999877666544210 00112


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      |+     +.-+|..+..+|++.+|+..++.|++
T Consensus       161 d~-----~Ll~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         161 DG-----HLLFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             Cc-----hHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            22     33468889999999999999998886

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.83  E-value=0.66  Score=42.44  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                      ......+..+...|+|++|++.++.++.    .+| .+|......+.+|.++...+++.+|+..+++.++..     |+|
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~  102 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH  102 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence            3345567777788999999999888876    344 557777889999999999999999999999988643     666


Q ss_pred             chHHHHHHHHH
Q 017649          343 PFMKELILKLE  353 (368)
Q Consensus       343 p~~~~l~~~L~  353 (368)
                      |.+-...=++.
T Consensus       103 ~~~~~a~Y~~g  113 (243)
T PRK10866        103 PNIDYVLYMRG  113 (243)
T ss_pred             CchHHHHHHHH
Confidence            66655444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.80  E-value=0.33  Score=47.76  Aligned_cols=98  Identities=5%  Similarity=-0.032  Sum_probs=69.5

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh---------------
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------  291 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~---------------  291 (368)
                      +......|++++|...+++..+     ..|+|+..   +..++.+|...|+|++|++++.+..+.               
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a  231 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA  231 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4455678899999988877654     34666644   556788999999999998665544421               


Q ss_pred             H-------------------HhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          292 Y-------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       292 ~-------------------e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      +                   -+-+|..+|...-....+|..+...|+.++|.+.++++++
T Consensus       232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            0                   0123334444455667788999999999999999999876

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=0.8  Score=46.39  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHh-----------------------hcccCCccccHHHHHHHHHHHHHhhhhHHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQ-----------------------KKLYHPFSVNLMQTREKLIKILMELEDWKEAL  282 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~-----------------------~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al  282 (368)
                      .|+.++..|+|++|.++|+.+.+-.                       .+..+..--.......|.|.+++..|+|.+|+
T Consensus       116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~  195 (652)
T KOG2376|consen  116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAI  195 (652)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHH
Confidence            4566778888888888887763210                       01111112235567788999999999999999


Q ss_pred             HHHHhhhhhHHhhcCCCC-------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          283 AYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       283 ~~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      +.++.++.+.++.+-...       -.+......|+-++..+|+.+||...|...+
T Consensus       196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            999999887766554221       2355666778888999999999999776644

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.75  E-value=1.3  Score=44.74  Aligned_cols=139  Identities=17%  Similarity=0.146  Sum_probs=98.9

Q ss_pred             CCCHHHHHHHHHHHHH--------HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhH
Q 017649          207 VRSKEEIKKIASEVNI--------LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW  278 (368)
Q Consensus       207 ~~~~~~~~~~~~~~~~--------l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~  278 (368)
                      ..+.....+++.....        ++..+.....+|+.++|++.++++...... +..-+   .-....++-.++.+++|
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~---~l~~~El~w~~~~~~~w  321 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLH---HLCYFELAWCHMFQHDW  321 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHH---HHHHHHHHHHHHHHchH
Confidence            3445555555554433        345566667889999999999987643221 22222   22456788889999999


Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCCh-------HHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~-------~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      ++|.++..+..+.-       .=..+...|-.|..+..+|+.       ++|..++.++-....+.-|..-|.=+-+..+
T Consensus       322 ~~A~~~f~~L~~~s-------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK  394 (468)
T PF10300_consen  322 EEAAEYFLRLLKES-------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRK  394 (468)
T ss_pred             HHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHH
Confidence            99999988877622       224677778888888899988       8999999999999998888888866666666


Q ss_pred             HHHHH
Q 017649          352 LEEAQ  356 (368)
Q Consensus       352 L~~~~  356 (368)
                      ++.-.
T Consensus       395 ~~~~~  399 (468)
T PF10300_consen  395 AQKYE  399 (468)
T ss_pred             HHHHH
Confidence            65443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=0.42  Score=47.06  Aligned_cols=94  Identities=17%  Similarity=0.180  Sum_probs=62.7

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH----HhhcCC-------CChH
Q 017649          234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY----QRVYPQ-------FHPL  302 (368)
Q Consensus       234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~----e~~~g~-------~hp~  302 (368)
                      +++++|+..+++++++        |+..+.+..-++.-|+.+.+-..|++-+++++++.    +..||-       .-|.
T Consensus       344 ~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             HhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            3567777777777664        55566666677777777777777777777777653    333331       1122


Q ss_pred             HHH---------------HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          303 LGL---------------QYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       303 ~~~---------------~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      .+.               .+..||..|..+++.++|++-|++|+..-.
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence            222               233468888899999999999999986443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.71  E-value=0.48  Score=50.00  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .-+.+.|..++..|++.+|+.++..+....    +..+   ..+...+|.+|..+|.+++|++++.+++..     -|+|
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~----~~~~---~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~  482 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITNRE----GYQN---AFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APDN  482 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhcCc----cccc---hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCc
Confidence            345677888899999999999887664321    1112   556788999999999999999999998863     2455


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~k  329 (368)
                      .   -....|+.++..+|+.++|...+.+
T Consensus       483 ~---D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  483 L---DARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             h---hhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            4   4467888999999999966655444

>TIGR00540 hemY_coli hemY protein

Probab=93.65  E-value=2.7  Score=41.42  Aligned_cols=108  Identities=9%  Similarity=-0.051  Sum_probs=58.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+......|+++.|.+...+..+.     .|. +.+  ..-..+.++...|++++|.+++.++.+    ..|....
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~-----~~~-~~~--~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l  153 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADH-----AAE-PVL--NLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNI  153 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhc-----CCC-CHH--HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCch
Confidence            3344455556778888888777655432     111 111  122356666677777777777776542    2332222


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      .+   ....+.++...|++++|...+++..+.     .|+||.+..+.
T Consensus       154 ~~---~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll  193 (409)
T TIGR00540       154 LV---EIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLA  193 (409)
T ss_pred             HH---HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            22   122366666677777777766665542     36666544433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.59  E-value=0.51  Score=46.42  Aligned_cols=61  Identities=16%  Similarity=0.083  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      +..++.++...++|++|.+++++++..     .|..+.    +..||.++..+|+.++|..++++++...
T Consensus       331 ~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~----~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        331 WSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYD----YAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            444666666667777777766666653     122221    2346666667777777777777666543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=93.58  E-value=1.1  Score=47.43  Aligned_cols=89  Identities=15%  Similarity=-0.012  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh-ccccC----
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL-RITHG----  339 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~-~~~~G----  339 (368)
                      ...|..++...|+++.|....++.++     .+|.+   ...+..|+.+|...|+.++|.+++++..+.- .+..|    
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~-----~~p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i  568 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYG-----MGPEK---LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI  568 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhC-----CCCCC---CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence            44455555555555555554444332     12222   2356677889999999999999988766432 11111    


Q ss_pred             -------------CCCchHHHHHHHHHHHHHHHhh
Q 017649          340 -------------TNSPFMKELILKLEEAQAEASY  361 (368)
Q Consensus       340 -------------~~hp~~~~l~~~L~~~~~el~~  361 (368)
                                   ..||...++..+|..+..++..
T Consensus       569 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  603 (697)
T PLN03081        569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE  603 (697)
T ss_pred             EECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence                         3499999999888888766643

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.36  E-value=2.5  Score=37.16  Aligned_cols=98  Identities=13%  Similarity=0.004  Sum_probs=65.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      .+..|..+.+.+++++|+..++.++..-.     +...-.-+...|+.+...+|.+++|+..+....         ++--
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w  157 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESW  157 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccH
Confidence            34556667788888888877776653211     111222345668889999999999977644322         2222


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .+.....-|.++...|+..+|+..|++|+...
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            23333445889999999999999999999865

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.32  E-value=0.14  Score=48.32  Aligned_cols=27  Identities=11%  Similarity=0.128  Sum_probs=13.5

Q ss_pred             hhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          308 YTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       308 ~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .|+|......++++-++.-+++|+...
T Consensus       362 ~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  362 CNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             hhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            344444445555555555555555433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.31  E-value=1.5  Score=39.94  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc---cCCccccHH-------HHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL---YHPFSVNLM-------QTREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~---l~~~h~~l~-------~~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      +..+..+...++..|+|.+|...|..++...+.+   --|..+..+       -.+-|.++++...|+|-+++++|..++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            3456677888899999999999998876643322   123333332       245677888889999999999998887


Q ss_pred             hhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          290 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       290 ~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .        -||.-..+||.=|++....-+..+|..-+.++++
T Consensus       258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~  292 (329)
T KOG0545|consen  258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE  292 (329)
T ss_pred             h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence            5        4566678899999999999999999999999886

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.18  E-value=0.24  Score=46.28  Aligned_cols=80  Identities=23%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             HHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcC-ChHHHHHHHHHHHHhhcc--ccCCCCchHHHH
Q 017649          272 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKEL  348 (368)
Q Consensus       272 ~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~kAl~i~~~--~~G~~hp~~~~l  348 (368)
                      ...+|+++.|..++.++-.......|..--.++..+++.|+-....+ ++++|..++++|+++++.  ..+..||...++
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35679999999998887776654445555567889999999999999 999999999999999876  245667777665


Q ss_pred             HHH
Q 017649          349 ILK  351 (368)
Q Consensus       349 ~~~  351 (368)
                      ...
T Consensus        83 r~~   85 (278)
T PF08631_consen   83 RLS   85 (278)
T ss_pred             HHH
Confidence            543

It is also involved in sporulation [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=93.17  E-value=0.35  Score=36.05  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT  288 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~  288 (368)
                      .....|..++..|++++|+.++++ ...        ++........+|.++..+|+|++|++.++++
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            344567888899999999988876 211        2223555667899999999999999987753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.03  E-value=0.23  Score=30.00  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVY  292 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~  292 (368)
                      .+..+++.++..+|++++|+..+++++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            467789999999999999999999998754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.98  E-value=0.56  Score=46.06  Aligned_cols=98  Identities=14%  Similarity=0.065  Sum_probs=72.6

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      ....+..|++++|.+.|+.++.        ++....+++.+++-.+-.+|++++|++.+.++-.++.     ++   +-.
T Consensus       497 gn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-----nn---~ev  560 (840)
T KOG2003|consen  497 GNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-----NN---AEV  560 (840)
T ss_pred             CceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-----hh---HHH
Confidence            3345567888999888887764        3556778888888888899999999998777665553     22   345


Q ss_pred             HhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          307 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       307 l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      ++.+|.+|-.+.+...|+++|.+|..+     =|+.|-+
T Consensus       561 l~qianiye~led~aqaie~~~q~~sl-----ip~dp~i  594 (840)
T KOG2003|consen  561 LVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAI  594 (840)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHH
Confidence            677888888888899999998888653     3566644

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.94  E-value=1.4  Score=38.11  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             cccHHHHHHHHHHHHHhhhhH---HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcC----ChHHHHHHHHHH
Q 017649          258 SVNLMQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEA  330 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~---~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g----~~~eA~~~l~kA  330 (368)
                      +|.-...+++-+.++..+.++   .++.++.+.++.-++..+- -+|.....++++|.++..++    +..+|..+|++|
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            333456667777777776555   4566777777765554332 22444455677777776553    446788888888


Q ss_pred             HHhhccc--cCCCCchHHHHHHHH---HHHHHHHhhhh
Q 017649          331 VEILRIT--HGTNSPFMKELILKL---EEAQAEASYKL  363 (368)
Q Consensus       331 l~i~~~~--~G~~hp~~~~l~~~L---~~~~~el~~~~  363 (368)
                      .+-++..  .-|+.+.++..+.+-   -++.+|++.+.
T Consensus       100 ~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~  137 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            8877754  456677776655443   34466776653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.93  E-value=0.59  Score=42.97  Aligned_cols=87  Identities=23%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      .++.|.-+...|+|..|..-++..++-|     |+++.+..++|=||..++.+|++++|...|..+..    . =|+||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~-~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----D-YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----h-CCCCCC
Confidence            4666666777899999998888877654     68888999999999999999999999999998887    2 257777


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 017649          345 MKELILKLEEAQAEASY  361 (368)
Q Consensus       345 ~~~l~~~L~~~~~el~~  361 (368)
                      .-|.+-+|..+..++.+
T Consensus       214 ApdallKlg~~~~~l~~  230 (262)
T COG1729         214 APDALLKLGVSLGRLGN  230 (262)
T ss_pred             ChHHHHHHHHHHHHhcC
Confidence            77878888777655543

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.81  E-value=2.6  Score=38.42  Aligned_cols=59  Identities=20%  Similarity=0.226  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh-hcCChHHHHHHHHHHHHhhccc
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ++|...+++++++....+||.||.+.....+.+..++ ..|+.++|....++|++-....
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~  202 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            5788899999999999999999998777777777765 4799999999888877655433

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.81  E-value=0.17  Score=49.50  Aligned_cols=117  Identities=20%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHH------H-HHhhcccCCccc---cHHHHHHHHHHHHHhhhhH
Q 017649          209 SKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMI------E-KLQKKLYHPFSV---NLMQTREKLIKILMELEDW  278 (368)
Q Consensus       209 ~~~~~~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~------l-~~~~~~l~~~h~---~l~~~~~~La~~~~~~g~~  278 (368)
                      ..+.++++..++..+.++....-+.|++.+|+..-+.+      + +.+++.--|.+.   .+..++.+|++-|....-+
T Consensus       138 peek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~  217 (840)
T KOG2003|consen  138 PEEKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMT  217 (840)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHH
Confidence            35567778888888888777777888888887654332      2 112222222222   3346677777777655455


Q ss_pred             HHHHHHHHhhhhhHHhhcC-CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          279 KEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .+|+-       .|+.+.- ...|.-|..-+++|.+++...++.+|+++|+-|++
T Consensus       218 ~ealn-------tyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald  265 (840)
T KOG2003|consen  218 AEALN-------TYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD  265 (840)
T ss_pred             HHHhh-------hhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence            55544       4443332 45566677788899999999999999999988876

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.71  E-value=0.65  Score=42.37  Aligned_cols=91  Identities=20%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH----H
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL----L  303 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~----~  303 (368)
                      ....++|+--+|++.....++.+   + .+    ..+...|+.+|...|+|++|.-.+++.+-+     -|..|.    +
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F---~-~D----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-----~P~n~l~f~rl  194 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKF---M-ND----QEAWHELAEIYLSEGDFEKAAFCLEELLLI-----QPFNPLYFQRL  194 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHh---c-Cc----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----CCCcHHHHHHH
Confidence            34456677667776655554432   1 11    457788999999999999998877776532     244443    3


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      +-.+|.+|.    ..++.-|.++|.+|+++-.
T Consensus       195 ae~~Yt~gg----~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  195 AEVLYTQGG----AENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence            444444443    2456789999999998644

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.60  E-value=2  Score=35.53  Aligned_cols=74  Identities=18%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-CCC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFH  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-~~h  300 (368)
                      .....+......|++++|+..+++++..     +|.+-   .+...++.+|...|+..+|++.+++....+..-+| +.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~E---~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL-----DPYDE---EAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-H---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence            3344555567889999999998888764     34433   34567899999999999999999999999988888 455


Q ss_pred             hHH
Q 017649          301 PLL  303 (368)
Q Consensus       301 p~~  303 (368)
                      |.+
T Consensus       136 ~~~  138 (146)
T PF03704_consen  136 PET  138 (146)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.50  E-value=0.94  Score=43.92  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=54.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+.+++.+     .|.   ...++..++.++..+|+|++|+..+++++.     +.|.++
T Consensus        38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~---~~~a~~~lg~~~~~lg~~~eA~~~~~~al~-----l~P~~~  104 (356)
T PLN03088         38 LYADRAQANIKLGNFTEAVADANKAIEL-----DPS---LAKAYLRKGTACMKLEEYQTAKAALEKGAS-----LAPGDS  104 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCH
Confidence            4456677778889999999999988765     233   345677899999999999999999999886     335666


Q ss_pred             HHH
Q 017649          302 LLG  304 (368)
Q Consensus       302 ~~~  304 (368)
                      ...
T Consensus       105 ~~~  107 (356)
T PLN03088        105 RFT  107 (356)
T ss_pred             HHH
Confidence            654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.47  E-value=7.7  Score=36.32  Aligned_cols=137  Identities=15%  Similarity=0.185  Sum_probs=82.6

Q ss_pred             CHHHHHHHHHHH-----HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHH
Q 017649          209 SKEEIKKIASEV-----NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA  283 (368)
Q Consensus       209 ~~~~~~~~~~~~-----~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~  283 (368)
                      +.+++++++..+     ...+..+..+...|++.+|..++..++...     |.+   ..+.-.++.+|...|+.+.|..
T Consensus       118 Pesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~  189 (304)
T COG3118         118 PESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQA  189 (304)
T ss_pred             cHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHH
Confidence            345666665432     334556667788999999999888876642     222   3445568888888888765544


Q ss_pred             HHHh---------------hhhhHHhhc--C---------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHH------
Q 017649          284 YCQL---------------TIPVYQRVY--P---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV------  331 (368)
Q Consensus       284 ~~~~---------------~l~~~e~~~--g---------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl------  331 (368)
                      .+..               -++..++.-  |         ...|.-.-.-+.||+.+...|++++|.++|-.-+      
T Consensus       190 iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         190 ILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            3322               122222111  1         0123233445788999999999999988754322      


Q ss_pred             ----------HhhccccCCCCchHHHHHHHHHH
Q 017649          332 ----------EILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       332 ----------~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                                ++++ .+|+.||.+...+.+|..
T Consensus       270 ~d~~~Rk~lle~f~-~~g~~Dp~~~~~RRkL~s  301 (304)
T COG3118         270 EDGEARKTLLELFE-AFGPADPLVLAYRRKLYS  301 (304)
T ss_pred             cCcHHHHHHHHHHH-hcCCCCHHHHHHHHHHHH
Confidence                      2222 257777777777666654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=92.30  E-value=1.3  Score=47.84  Aligned_cols=105  Identities=12%  Similarity=-0.036  Sum_probs=74.4

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH---hhcC----C
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---RVYP----Q  298 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e---~~~g----~  298 (368)
                      .|+.+...+..++|..+++.++.-.... ++ ++.-+.....|..+|++.++|++|..+..+..+.-.   ..+|    .
T Consensus       333 ~adayl~~~~P~kA~~l~~~~~~~~~~~-~~-~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  410 (822)
T PRK14574        333 AASAYIDRRLPEKAAPILSSLYYSDGKT-FR-NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE  410 (822)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhccccc-cC-CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence            3556677778888888888875432111 11 222333456899999999999999999888775211   2233    5


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .+|........++.++...|++.+|+..+++.+.
T Consensus       411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~  444 (822)
T PRK14574        411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS  444 (822)
T ss_pred             CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6777777788888888999999999998887654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.24  E-value=0.34  Score=29.02  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVY  292 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~  292 (368)
                      .+...++.++..+|+|++|++++++++...
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            456789999999999999999999998754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=92.07  E-value=1.5  Score=41.81  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~-h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      .++...++.+.....+++|-++++.++++++..     |. -...+.....+..++...|.+.+|+.-|.+++++     
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-----  336 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-----  336 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-----
Confidence            344445566677778889999888888876532     22 2233444555777888899999999999999874     


Q ss_pred             CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649          297 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       297 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                         .|.-+..+-.=|.+|..-..|++|+.-|++|.+     +.++|...++=+.....
T Consensus       337 ---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e-----~n~sn~~~reGle~Akr  386 (504)
T KOG0624|consen  337 ---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE-----LNESNTRAREGLERAKR  386 (504)
T ss_pred             ---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHH
Confidence               344445566668888888999999999999986     34455544444433333

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.05  E-value=1.1  Score=43.68  Aligned_cols=67  Identities=7%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +|..+.+-..+|.++..-|.++.++.++++.+..+    +..     .....||.+......+++|+++|.+|+.+
T Consensus       434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----ccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            55566677778888888899999999888887654    222     34467889999999999999999999873

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=91.96  E-value=0.16  Score=51.83  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             cccccCCCccCcEEE--E-eC-CEEEEEEccCCCCCCeeEEeccC
Q 017649           96 ISIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEVLISYIE  136 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~--~-~~-~~~~~~a~~~i~~geel~~~Y~~  136 (368)
                      +-+.|||=.|||...  + .| .++-++|.|.|.+|||||..|-.
T Consensus       666 ~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY  710 (739)
T KOG1079|consen  666 IRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY  710 (739)
T ss_pred             hhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence            446799999999652  2 23 47889999999999999999953

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=91.90  E-value=2.9  Score=39.92  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~  298 (368)
                      +++..++....+...|.+..|+..|..+.+.        ++....+...-+.+|..+|+-.-|+.-+.++++.       
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-------  101 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-------  101 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-------
Confidence            3444555666777888899999888877643        3444556677788899999988888777776653       


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                       -|...-+...=|.++..+|++++|+.-+.+.++     +.|+.....+.+.+|+-+
T Consensus       102 -KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  102 -KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             -CccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhH
Confidence             244444555668888899999999999888875     455555677777666544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.81  E-value=4.5  Score=36.95  Aligned_cols=99  Identities=10%  Similarity=0.050  Sum_probs=63.0

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH-HHHhhhh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG-LQYYTCG  311 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~-~~l~~La  311 (368)
                      ..+|++|..-+.++.+-++.--.  -..-+.++...+.....+..|.+++.+++++...|-..   .+|.++ ..+-+-|
T Consensus        44 Ak~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~---GspdtAAmaleKAa  118 (308)
T KOG1585|consen   44 AKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC---GSPDTAAMALEKAA  118 (308)
T ss_pred             hccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---CCcchHHHHHHHHH
Confidence            34677776655555443321111  11235667778888888899999999999999888643   344443 3444444


Q ss_pred             hHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          312 KLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ++. ..-+.++|+.+|++++.+++..
T Consensus       119 k~l-env~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  119 KAL-ENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHh-hcCCHHHHHHHHHHHHHHHhcc
Confidence            444 4556788888888888877654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.71  E-value=2.9  Score=37.89  Aligned_cols=101  Identities=12%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~-~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .|...+..++.++|+.-++++..+++.. |.... -+.-+..|+.+|-. +.++++|+.+++++-+-|.   |......+
T Consensus        79 eA~~cykk~~~~eAv~cL~~aieIyt~~-Grf~~-aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk---~ees~ssA  153 (288)
T KOG1586|consen   79 EAANCYKKVDPEEAVNCLEKAIEIYTDM-GRFTM-AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK---GEESVSSA  153 (288)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHhh-hHHHH-HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc---chhhhhhH
Confidence            3444455567777777777777776542 11100 01222346666754 4788888888888877664   44444444


Q ss_pred             H-HHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          305 L-QYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       305 ~-~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      . .+.+.|.....+|+|.+|++.|++..
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 55677888888999999999988744

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.59  E-value=0.41  Score=30.31  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .++..|+.+....++|+.|++=+++++++.+.++|+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            3567799999999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=91.17  E-value=1.9  Score=44.86  Aligned_cols=119  Identities=13%  Similarity=0.056  Sum_probs=80.8

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH
Q 017649          198 GFTCQQCGLVRSKEEIKKIASEVNILSKKTLA-----LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL  272 (368)
Q Consensus       198 ~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~-----~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~  272 (368)
                      .|.|..=.-..+..-.++...-......+|..     ..++++|+++.+.++..+++        ++....+...++.+.
T Consensus       458 ~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~A  529 (777)
T KOG1128|consen  458 RLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAA  529 (777)
T ss_pred             hhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHH
Confidence            35565444444444444444333333334433     24567888888888877665        455677888889999


Q ss_pred             HhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          273 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       273 ~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ...++|..|++.+...+.     +-|+   -+-..+|++.+|...|+..+|...+++|+.
T Consensus       530 Lqlek~q~av~aF~rcvt-----L~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  530 LQLEKEQAAVKAFHRCVT-----LEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             HHHhhhHHHHHHHHHHhh-----cCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            999999999888776553     2244   456788999999888888888888888875

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.07  E-value=1.7  Score=41.68  Aligned_cols=100  Identities=12%  Similarity=0.077  Sum_probs=72.6

Q ss_pred             ChHHHHHHHHHHHHHhhcc-cCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649          235 NHQEVVSTYKMIEKLQKKL-YHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  312 (368)
Q Consensus       235 ~~~eA~~l~~~~l~~~~~~-l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  312 (368)
                      ++++|.-...++.++...+ ++.-|. +..-+..+++.++..+|+...|.++|+++.++.-  --++-+..+..+.-+|.
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--QHGDRALQARCLLCFAD  254 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--HhCChHHHHHHHHHHHH
Confidence            3445554445555543221 222222 2334667889999999999999999999887653  23567788888999999


Q ss_pred             HhhhcCChHHHHHHHHHHHHhhcc
Q 017649          313 LEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       313 l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      +|...|+.+.|..-|++|+.++.-
T Consensus       255 IyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             HHHhcccHhHHHHHHHHHHHHHhh
Confidence            999999999999999999987754

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.94  E-value=2.8  Score=32.07  Aligned_cols=81  Identities=14%  Similarity=0.081  Sum_probs=56.2

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~-h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      ...|++.+|++.+.+.......-..+. +.....+.-+++.+....|++++|+..+++++.+.+..  .+...++..+.-
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~   86 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSW   86 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHH
Confidence            466899999988888777644332222 22344566778899999999999999999999988865  344445555444


Q ss_pred             hhhH
Q 017649          310 CGKL  313 (368)
Q Consensus       310 La~l  313 (368)
                      +..+
T Consensus        87 ~~~l   90 (94)
T PF12862_consen   87 LANL   90 (94)
T ss_pred             HHHH
Confidence            4433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.84  E-value=1.3  Score=41.75  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHh
Q 017649          235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  314 (368)
Q Consensus       235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~  314 (368)
                      ++++|...|+.+..    .+++    ...+++.++.+.+.+|+|++|.+.+.+++..     .+.+|.   .+.+++.+.
T Consensus       182 ~~~~A~y~f~El~~----~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d---~LaNliv~~  245 (290)
T PF04733_consen  182 KYQDAFYIFEELSD----KFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPD---TLANLIVCS  245 (290)
T ss_dssp             CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHH---HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHH---HHHHHHHHH
Confidence            57788877776432    2332    3455778899999999999999998887652     255565   567888888


Q ss_pred             hhcCCh-HHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          315 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       315 ~~~g~~-~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ..+|+. +.+..++.+...     ..|+||.++++..+=
T Consensus       246 ~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~  279 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKE  279 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHH
T ss_pred             HHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHH
Confidence            899988 455556655333     368899999888653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=90.80  E-value=1.7  Score=42.67  Aligned_cols=82  Identities=17%  Similarity=0.176  Sum_probs=58.6

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      ...++..+|+.+..+++..     .|.+   ..++..-+..+...++++.|++.+++++...        |.--..++.|
T Consensus       211 l~~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~L  274 (395)
T PF09295_consen  211 LLMNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQL  274 (395)
T ss_pred             HhcCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHH
Confidence            3444556666666655532     2333   4445567777888999999999999988743        4445677889


Q ss_pred             hhHhhhcCChHHHHHHHH
Q 017649          311 GKLEWFLGDTENAIKSMT  328 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~  328 (368)
                      |++|..+|++++|+..+.
T Consensus       275 a~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  275 AECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHhcCCHHHHHHHHh
Confidence            999999999999987654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.76  E-value=0.54  Score=28.18  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQ  293 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e  293 (368)
                      ++...++.+|..+|++++|.+++++++++-.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567899999999999999999999987653

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.55  E-value=4.6  Score=39.55  Aligned_cols=106  Identities=20%  Similarity=0.258  Sum_probs=73.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH------hh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RV  295 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e------~~  295 (368)
                      .++-+...+...|+.++|+-.|+.+..+     .   |.-++.+..|...|...|.+.+|..+...++..+.      .+
T Consensus       336 alilKG~lL~~~~R~~~A~IaFR~Aq~L-----a---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL  407 (564)
T KOG1174|consen  336 ALILKGRLLIALERHTQAVIAFRTAQML-----A---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL  407 (564)
T ss_pred             HHHhccHHHHhccchHHHHHHHHHHHhc-----c---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence            3444444555667777777777665443     2   34567788899999999999998887777654442      23


Q ss_pred             cC----------------------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          296 YP----------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       296 ~g----------------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      +|                      .-.|.+..+-..+|.++...|+++++++++++++.++-
T Consensus       408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~  469 (564)
T KOG1174|consen  408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP  469 (564)
T ss_pred             hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence            33                      12344555566778888889999999999999987654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=90.50  E-value=0.72  Score=47.08  Aligned_cols=69  Identities=19%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                      .++..++..+...|++++|..++++++..-        |. ...+..+|+++...|+.++|+..+.+|+.     +.|.+
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~~  486 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPGE  486 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC
Confidence            445556666667799999999999988744        22 46788899999999999999999999986     45666


Q ss_pred             chH
Q 017649          343 PFM  345 (368)
Q Consensus       343 p~~  345 (368)
                      |.+
T Consensus       487 pt~  489 (517)
T PRK10153        487 NTL  489 (517)
T ss_pred             chH
Confidence            643

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.45  E-value=0.45  Score=30.14  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=32.2

Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  341 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~  341 (368)
                      .+..||.+....+++++|+.-|++|++|.+..+.++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999887664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.35  E-value=0.46  Score=30.80  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=28.8

Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      .++.+|.++..+|++++|++.|+++++.     .|+++..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a   37 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEA   37 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHH
Confidence            4678999999999999999999999973     4555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.98  E-value=3.6  Score=35.70  Aligned_cols=103  Identities=11%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +.+.+.-+..-|+.++|.+.|.++......     .-..+.+.-++..+.+..++|.....+..++-...+.  |.+.-.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~  111 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTS-----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWER  111 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHH
Confidence            345666677889999999999887654322     2235666778888899999999999998888877765  322111


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ......--|..+...++|.+|-..|-.+..
T Consensus       112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  112 RNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            111112224445567888888888777754

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.44  Score=45.86  Aligned_cols=81  Identities=22%  Similarity=0.192  Sum_probs=64.6

Q ss_pred             CCCHHHHHHHHhhhhcccccccc----------CCCCceeEEEccccccccCCCc-cCcEEEEeCCEEEEEEccCCCCCC
Q 017649           60 EISINEIAENFSKLACNAHTICN----------SELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA  128 (368)
Q Consensus        60 ~~~~~~~~~~~~~~~~N~~~i~~----------~~~~~~g~~lyp~~s~~nHsC~-PN~~~~~~~~~~~~~a~~~i~~ge  128 (368)
                      .++.++.+.+.+.+..-+|-|.-          .+..+.|-..-|.+-++||.=. -|+...++.+.+.+.|.|+|++|+
T Consensus       173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd  252 (466)
T KOG1338|consen  173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD  252 (466)
T ss_pred             ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence            57788888888887777776532          2234678888999999999876 677777888999999999999999


Q ss_pred             eeEEeccCCCCC
Q 017649          129 EVLISYIETAGS  140 (368)
Q Consensus       129 el~~~Y~~~~~~  140 (368)
                      |+..+|+-..++
T Consensus       253 ev~n~dg~~p~~  264 (466)
T KOG1338|consen  253 EVDNSDGLKPMG  264 (466)
T ss_pred             ccccccccCcch
Confidence            999999754443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.81  E-value=0.95  Score=29.26  Aligned_cols=35  Identities=14%  Similarity=0.038  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      +...++.+|..+|++++|++.+++++..     .|++|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a   37 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEA   37 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHH
Confidence            4667999999999999999999999873     2455543

>PLN03077 Protein ECB2; Provisional

Probab=89.78  E-value=7.1  Score=42.42  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-----hhHHh------hcC-
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI-----PVYQR------VYP-  297 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l-----~~~e~------~~g-  297 (368)
                      +...|..++|.++++......  -..|+    ...+..+..++.+.|++++|.++.++.-     .+|..      ..+ 
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~--gi~P~----~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~  672 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKY--SITPN----LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH  672 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHh--CCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence            445566666666665543221  01121    2344556666666666666666655420     00100      000 


Q ss_pred             ------------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh-hcccc----------------C-CCCchHHH
Q 017649          298 ------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRITH----------------G-TNSPFMKE  347 (368)
Q Consensus       298 ------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i-~~~~~----------------G-~~hp~~~~  347 (368)
                                  .-.|.-...+..|+.+|...|++++|.+..+.-.+. +++..                | ..||.+.+
T Consensus       673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~  752 (857)
T PLN03077        673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKE  752 (857)
T ss_pred             hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHH
Confidence                        011222234566788899999999999987665431 12212                2 45999999


Q ss_pred             HHHHHHHHHHHHh
Q 017649          348 LILKLEEAQAEAS  360 (368)
Q Consensus       348 l~~~L~~~~~el~  360 (368)
                      +..+|+.+..++.
T Consensus       753 i~~~l~~l~~~~~  765 (857)
T PLN03077        753 INTVLEGFYEKMK  765 (857)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876664

>smart00101 14_3_3 14-3-3 homologues

Probab=89.50  E-value=11  Score=34.45  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=45.0

Q ss_pred             HHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHhh
Q 017649          278 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       278 ~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~  334 (368)
                      .++|.+.++.++++...-+||.||.+.....+.+..+.. +++.++|....++|++-.
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            347788888898888888999999987777777777765 588899998777766543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=89.09  E-value=1.2  Score=33.99  Aligned_cols=54  Identities=19%  Similarity=0.106  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhH---------------HhhcCCCChHHHHHHhhhhhHh
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVY---------------QRVYPQFHPLLGLQYYTCGKLE  314 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~---------------e~~~g~~hp~~~~~l~~La~l~  314 (368)
                      =..++..++..+...|++++|++.+..++..-               =.++|+.||.+.....+|+.++
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence            34678889999999999999998776654321               1467888898888888887765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.99  E-value=0.75  Score=27.16  Aligned_cols=29  Identities=31%  Similarity=0.471  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhH
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVY  292 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~  292 (368)
                      ++..++.++...|++++|+++++++++-+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            56789999999999999999999888643

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.78  E-value=0.52  Score=27.86  Aligned_cols=28  Identities=21%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +++.+|.++..+|++++|+..+++.++-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5789999999999999999999998763

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=88.14  E-value=3  Score=34.76  Aligned_cols=51  Identities=16%  Similarity=0.124  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED  277 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~  277 (368)
                      ..++.+..++.++++++|+..+++.++     |||.|+.+--+....+-++..+..
T Consensus        49 AqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   49 AQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCCccHHHHHHHHHHHHHhh
Confidence            445667778899999999999988865     799999988887777766666543

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]

Probab=88.03  E-value=0.24  Score=49.69  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             ceeEEEccccc-cccCCCccCcEEEE----eCCEEEEEEccCCCCCCeeEEeccCC
Q 017649           87 PLGTGLYPVIS-IINHSCLPNAVLVF----EGRLAVVRAVQHVPKGAEVLISYIET  137 (368)
Q Consensus        87 ~~g~~lyp~~s-~~nHsC~PN~~~~~----~~~~~~~~a~~~i~~geel~~~Y~~~  137 (368)
                      .+..+.++..| .+||||.||+...=    ......+.|.+.|+.|+|+|.+|.-.
T Consensus       362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~  417 (463)
T KOG1081|consen  362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN  417 (463)
T ss_pred             ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence            46677788877 66999999997532    23467899999999999999999644

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=88.01  E-value=4.3  Score=42.54  Aligned_cols=92  Identities=21%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHH--HHHhhhhhHHhhcCCCChHHHH
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~--~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .....+|.+.+|.+.|..++.     +.|+|+..+   ..||.++...|+-..|..  +...++.     ++|..|   -
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~---~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~---e  755 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALA-----LDPDHVPSM---TALAELLLELGSPRLAEKRSLLSDALR-----LDPLNH---E  755 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHH---HHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCH---H
Confidence            334456677777777765553     578888764   458888998886655555  5555553     444444   4


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      .++.||.+...+|+.++|.+.|.-|++.-.
T Consensus       756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  756 AWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            688999999999999999999999987543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=87.98  E-value=0.57  Score=46.15  Aligned_cols=77  Identities=16%  Similarity=0.123  Sum_probs=67.2

Q ss_pred             HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhh
Q 017649          286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  362 (368)
Q Consensus       286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~  362 (368)
                      .+++-+.++++||.||.+.....--|-.|...|+++..+++++-|+++-+..+.|-+|.|...+..-++..+-+-++
T Consensus       319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d  395 (615)
T KOG0508|consen  319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQD  395 (615)
T ss_pred             HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhh
Confidence            46788899999999999987777778889999999999999999999999999999999998888877776655544

>smart00028 TPR Tetratricopeptide repeats

Probab=87.96  E-value=0.61  Score=26.24  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=25.2

Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .++.+|.++...|++++|+..+++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4678999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=87.71  E-value=8.6  Score=30.59  Aligned_cols=101  Identities=11%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc---cHHHHHHHHHH-HHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV---NLMQTREKLIK-ILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~---~l~~~~~~La~-~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .|..++..|++-+|+++.+......     .++.   .+......+.. .-....+-+-...|..-+++.+.+-.. -+|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence            4566788999999999988876543     2222   22222222222 122334555666788888887765543 445


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .-+..+++||+-+-..--|++++..-++++.
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            5578888887665333445555444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=87.62  E-value=4.9  Score=38.96  Aligned_cols=69  Identities=17%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .||+++   .....|+..|...+.|.+|..+++.+++.     .+.    +..+..+|.++..+|+..+|....++++-.
T Consensus       323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKL-----RPS----ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            356666   34566888899999999999998877752     222    244567888899999999999999999843


Q ss_pred             h
Q 017649          334 L  334 (368)
Q Consensus       334 ~  334 (368)
                      .
T Consensus       391 ~  391 (400)
T COG3071         391 T  391 (400)
T ss_pred             h
Confidence            3

>PLN03218 maturation of RBCL 1; Provisional

Probab=87.42  E-value=6.1  Score=44.01  Aligned_cols=56  Identities=11%  Similarity=0.011  Sum_probs=31.9

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      ...+...|++++|..++......   -+.|+    ..++..|..+|...|++++|.+++.+..
T Consensus       514 I~gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        514 IDGCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33455667777777776654332   12222    2345566666666677776666655543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=86.88  E-value=6.3  Score=41.32  Aligned_cols=79  Identities=13%  Similarity=0.032  Sum_probs=59.6

Q ss_pred             cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ++|+|+   .+...|+.-|..+++...|+++++++++.    -|.+|+.   .+.-||.+....+++.+|++...-|++-
T Consensus       473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            567777   34567888889999999999999999874    3556653   3455677888899999999999998876


Q ss_pred             hccccCCCC
Q 017649          334 LRITHGTNS  342 (368)
Q Consensus       334 ~~~~~G~~h  342 (368)
                      ....|+..|
T Consensus       543 ~~~N~~l~~  551 (799)
T KOG4162|consen  543 FGDNHVLMD  551 (799)
T ss_pred             hhhhhhhch
Confidence            555444433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=86.70  E-value=3.1  Score=34.33  Aligned_cols=58  Identities=22%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             HHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          269 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       269 a~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      +.+....|+.+.|++.+.+++...        |..+..|++=|+.+.-+|+.++|++-+.+|+++.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            345667899999999999998754        6677889999999999999999999999999854

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=86.14  E-value=0.39  Score=47.28  Aligned_cols=71  Identities=6%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             HHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh
Q 017649          245 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW  315 (368)
Q Consensus       245 ~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~  315 (368)
                      +++-+.+++++|.|+++.....--+.+|.++|+|+.++++.+.+++...+.+-|-+|.++..+...+.+..
T Consensus       320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS  390 (615)
T KOG0508|consen  320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS  390 (615)
T ss_pred             HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence            35556788999999988765555566889999999999999999999999999999999998888877764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.14  E-value=1.6  Score=41.43  Aligned_cols=97  Identities=13%  Similarity=0.010  Sum_probs=58.3

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH-------hhc------
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ-------RVY------  296 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e-------~~~------  296 (368)
                      ++-.++.+-|...|++++.+     |..++.   ...+++-+++..++++-++.-.++++....       ..|      
T Consensus       334 yfY~~~PE~AlryYRRiLqm-----G~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQM-----GAQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             cccCCChHHHHHHHHHHHHh-----cCCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            44557888899889888764     222332   234555555555555544444444432221       000      


Q ss_pred             ----------------CCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          297 ----------------PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       297 ----------------g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                                      =...+.-+-.++|||.+....|+.++|..+|..|....
T Consensus       406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence                            02445566778888888888888888888888777643

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=85.84  E-value=3.9  Score=44.35  Aligned_cols=63  Identities=14%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      ++..||.+|-.+|++++|.+.++++++.-     +.+|   ..+.++|-.+... ++++|+.++.+|+..+-
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~---~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNP---EIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccH---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            67789999999999999999988888643     4444   5578888888888 89999999999987644

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.80  E-value=2.4  Score=37.97  Aligned_cols=89  Identities=17%  Similarity=0.036  Sum_probs=65.2

Q ss_pred             hhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc-hHHHHHHHHH
Q 017649          275 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP-FMKELILKLE  353 (368)
Q Consensus       275 ~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp-~~~~l~~~L~  353 (368)
                      ...+++|++-+..++-.++ +.+..+-..|..+.++|=++..+|+.+....++++|++.++..+-.+.. ....-...+.
T Consensus        90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            3467788888888887765 3455666899999999999999999999999999999999988765543 3333333455


Q ss_pred             HHHHHHhhhhc
Q 017649          354 EAQAEASYKLS  364 (368)
Q Consensus       354 ~~~~el~~~~~  364 (368)
                      .+..||..+.+
T Consensus       169 YLigeL~rrlg  179 (214)
T PF09986_consen  169 YLIGELNRRLG  179 (214)
T ss_pred             HHHHHHHHHhC
Confidence            55555555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=85.79  E-value=5.7  Score=39.51  Aligned_cols=108  Identities=16%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHH
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  307 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l  307 (368)
                      +.+...++..+|.+.+++++.+     .|+.+   -...+++++|+..|+..+|+.+..+.+...     |+.|   ..+
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l-----~P~~~---~l~~~~a~all~~g~~~eai~~L~~~~~~~-----p~dp---~~w  411 (484)
T COG4783         348 DILLEANKAKEAIERLKKALAL-----DPNSP---LLQLNLAQALLKGGKPQEAIRILNRYLFND-----PEDP---NGW  411 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhc-----CCCcc---HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----CCCc---hHH
Confidence            3456778889999988888754     34442   335689999999999999988877655321     2223   334


Q ss_pred             hhhhhHhh-----------------hcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          308 YTCGKLEW-----------------FLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       308 ~~La~l~~-----------------~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      ..||..|.                 ..|++++|+..+.+|.+-    .+.+.|...+.-..+.++
T Consensus       412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~  472 (484)
T COG4783         412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQL  472 (484)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHH
Confidence            44444444                 446666666666666653    445566555554444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=85.70  E-value=11  Score=40.96  Aligned_cols=113  Identities=13%  Similarity=-0.027  Sum_probs=69.7

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH------------h
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------------R  294 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e------------~  294 (368)
                      +..+...+++++|+.+++..++     .+|+.   +..+..++.++...+++..|.-.  .++++..            .
T Consensus        38 i~~~~~~~~~deai~i~~~~l~-----~~P~~---i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         38 IDAYKSENLTDEAKDICEEHLK-----EHKKS---ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHH-----hCCcc---eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence            3344577899999988876544     23333   33444556677766666655443  2222111            1


Q ss_pred             hcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          295 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       295 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      ..| .++.--.+++.||..|..+|+.++|...+++++++=     |+++.+   +++++...++
T Consensus       108 ~i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a---LNn~AY~~ae  162 (906)
T PRK14720        108 KIL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI---VKKLATSYEE  162 (906)
T ss_pred             HHH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH---HHHHHHHHHH
Confidence            111 122222488999999999999999999999999754     555543   5666555444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=85.40  E-value=5.5  Score=36.45  Aligned_cols=84  Identities=18%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc--cCCCCch
Q 017649          267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPF  344 (368)
Q Consensus       267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~--~G~~hp~  344 (368)
                      .++...+..|+|.+|+...+++...-        |.=+-.++-+|-+|...|++++|..-|.+|+++.-..  .=.++-+
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~--------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm  176 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLA--------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM  176 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccC--------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence            37788888999999999988877522        2233456788999999999999999999999855322  1122333


Q ss_pred             HHHHHHHHHHHHHH
Q 017649          345 MKELILKLEEAQAE  358 (368)
Q Consensus       345 ~~~l~~~L~~~~~e  358 (368)
                      ...+...++.++..
T Consensus       177 s~~L~gd~~~A~~l  190 (257)
T COG5010         177 SLLLRGDLEDAETL  190 (257)
T ss_pred             HHHHcCCHHHHHHH
Confidence            33444444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.14  E-value=32  Score=31.91  Aligned_cols=82  Identities=16%  Similarity=0.082  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCC
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  340 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~  340 (368)
                      +..+.+..+.+.+.+|+|++|....+.+++-.     +..|.+   +-|+-.+...+|+..++..-+-.-+    +..-|
T Consensus       206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-----~~dpet---L~Nliv~a~~~Gkd~~~~~r~l~QL----k~~~p  273 (299)
T KOG3081|consen  206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-----AKDPET---LANLIVLALHLGKDAEVTERNLSQL----KLSHP  273 (299)
T ss_pred             ChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----CCCHHH---HHHHHHHHHHhCCChHHHHHHHHHH----HhcCC
Confidence            45567788889999999999999988888643     233554   4566666677788877654333222    34568


Q ss_pred             CCchHHHHHHHHHH
Q 017649          341 NSPFMKELILKLEE  354 (368)
Q Consensus       341 ~hp~~~~l~~~L~~  354 (368)
                      +||++++...+=++
T Consensus       274 ~h~~vk~~~ekeae  287 (299)
T KOG3081|consen  274 EHPFVKHLNEKEAE  287 (299)
T ss_pred             cchHHHHHHHHHHH
Confidence            99999998866443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.01  E-value=5.5  Score=36.81  Aligned_cols=121  Identities=13%  Similarity=0.191  Sum_probs=74.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      .+.-|+.+.|...++++.+.-.+ +..-... .-+..+.+.++..+.+|..|...+.+.+        ...|...+..++
T Consensus       222 ~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~-~~V~~n~a~i~lg~nn~a~a~r~~~~i~--------~~D~~~~~a~Nn  291 (366)
T KOG2796|consen  222 SMQIGDIKTAEKYFQDVEKVTQK-LDGLQGK-IMVLMNSAFLHLGQNNFAEAHRFFTEIL--------RMDPRNAVANNN  291 (366)
T ss_pred             HHhcccHHHHHHHHHHHHHHHhh-hhccchh-HHHHhhhhhheecccchHHHHHHHhhcc--------ccCCCchhhhch
Confidence            45667877777777776643222 2221111 1233455666777778887766554433        355666777888


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhhhccC
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSK  366 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~~~~~  366 (368)
                      -|.++..+|+..+|++.++.++.+.     |.|..+..+.-+|..+ -|+.|.+|.+
T Consensus       292 KALcllYlg~l~DAiK~~e~~~~~~-----P~~~l~es~~~nL~tm-yEL~Ys~~~~  342 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQLEAMVQQD-----PRHYLHESVLFNLTTM-YELEYSRSMQ  342 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC-----CccchhhhHHHHHHHH-HHHHhhhhhh
Confidence            8999999999999999999988754     3444444444444433 3555555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=84.84  E-value=5.2  Score=39.36  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=66.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      ..+++++|+.+++++.+..     |   .   +...|++++...++-.+|+++..+++.        ..|.-+..+...|
T Consensus       181 ~t~~~~~ai~lle~L~~~~-----p---e---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa  241 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERD-----P---E---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSELLNLQA  241 (395)
T ss_pred             hcccHHHHHHHHHHHHhcC-----C---c---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHHHHHHH
Confidence            3467889998888765431     2   2   223478888888888899999888883        2233356667778


Q ss_pred             hHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          312 KLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                      ..+...++++.|++..++|..+.=-.+..+.
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~  272 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVELSPSEFETWY  272 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence            8899999999999999999986544444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.79  E-value=4.7  Score=29.77  Aligned_cols=50  Identities=18%  Similarity=0.039  Sum_probs=36.4

Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc--ccCCCCchHHH-HHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKL  352 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~--~~G~~hp~~~~-l~~~L  352 (368)
                      .|+.+...|.-.-..|++++|+.+|.+|++.+..  .+|...|..++ +..++
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~   57 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKS   57 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            3566777777888999999999999999999987  55634443333 34444

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.76  E-value=20  Score=35.13  Aligned_cols=113  Identities=15%  Similarity=0.066  Sum_probs=68.4

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH--hhhhHHHHHHHHHhhhhhHHh------
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTIPVYQR------  294 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~--~~g~~~~Al~~~~~~l~~~e~------  294 (368)
                      ....+..++..++|..|..++..+...    +++...  ...+..|+..|.  +.-++.+|.++++..+.....      
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~  207 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE  207 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence            345566778889999999998887653    333322  455666776664  566778888877755532111      


Q ss_pred             --------------hcC------C--C--ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc----cccCCC
Q 017649          295 --------------VYP------Q--F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR----ITHGTN  341 (368)
Q Consensus       295 --------------~~g------~--~--hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~----~~~G~~  341 (368)
                                    ..+      .  .  .+.+...++..|.--...|+|++|+-.+-+|++.+-    ..||-+
T Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~  282 (379)
T PF09670_consen  208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGID  282 (379)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                          111      0  0  122233333334444567999999999888887543    256644

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=84.62  E-value=1.3  Score=27.07  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             ccHHHHHHHHHHHHHhhhhHHHHH
Q 017649          259 VNLMQTREKLIKILMELEDWKEAL  282 (368)
Q Consensus       259 ~~l~~~~~~La~~~~~~g~~~~Al  282 (368)
                      |.-..++.+|+.+|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            334456889999999999999986

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.58  E-value=21  Score=33.37  Aligned_cols=115  Identities=13%  Similarity=0.044  Sum_probs=72.6

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh---hhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~---g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      .+..++..|++..|...|.++.++     .|+|+.+.   ..++.++..+   .+-.++..++++++.       -+|-.
T Consensus       162 Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~---~g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~  226 (287)
T COG4235         162 LGRAYMALGRASDALLAYRNALRL-----AGDNPEIL---LGLAEALYYQAGQQMTAKARALLRQALA-------LDPAN  226 (287)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHhcCCcccHHHHHHHHHHHh-------cCCcc
Confidence            345577888999999999888754     34556553   3455555433   233456666666553       22222


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  360 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~  360 (368)
                      + -.++-||..++..|++.+|...++.-++    ...++.|-..-+...+........
T Consensus       227 i-ral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~~~~~  279 (287)
T COG4235         227 I-RALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARALAQRS  279 (287)
T ss_pred             H-HHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHhccc
Confidence            2 4567789999999999999998777665    455666655555555444444333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=84.25  E-value=6.9  Score=40.30  Aligned_cols=96  Identities=19%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .++.++.+.++.+.|...++..+.++..     +|.|...+.+   .+-.+..+|+-++|.++++..+.        +.+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~   72 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDL   72 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCc
Confidence            4556666677777787777777777762     4667766543   34456678999999999888775        223


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .-.+-+.-+|-++....+|.+|++.|+.|+.+
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~  104 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI  104 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence            33345666788999999999999999999974

>PLN03218 maturation of RBCL 1; Provisional

Probab=84.22  E-value=11  Score=42.07  Aligned_cols=56  Identities=14%  Similarity=0.059  Sum_probs=30.3

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      .+...|++++|.+++......... +.|+    ..++..|..+|.+.|++++|.++++...
T Consensus       551 a~~k~G~~deA~~lf~eM~~~~~g-i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        551 ACGQSGAVDRAFDVLAEMKAETHP-IDPD----HITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhcCC-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344556777777776665432111 1222    2344556666666666666666655543

>PRK15331 chaperone protein SicA; Provisional

Probab=84.17  E-value=5.8  Score=33.93  Aligned_cols=75  Identities=11%  Similarity=0.054  Sum_probs=58.0

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ....+......|.-+...|++++|..+++-+.-     |.+..|..   ++-||..+..++++++|+..|..|.-+-..-
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d  104 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLKND  104 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            445666777788778889999999988775442     55666664   5889999999999999999999998766544


Q ss_pred             cCC
Q 017649          338 HGT  340 (368)
Q Consensus       338 ~G~  340 (368)
                      ++|
T Consensus       105 p~p  107 (165)
T PRK15331        105 YRP  107 (165)
T ss_pred             CCc
Confidence            444

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=84.03  E-value=20  Score=36.59  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc-ccCCCC-chHHHHHHHHHHHH
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-THGTNS-PFMKELILKLEEAQ  356 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~-~~G~~h-p~~~~l~~~L~~~~  356 (368)
                      ..+++++.+++.+.+..|+..|.   .-|.-+|.-+...+++.+|+..+-+|-++++. .|+.+. .++++.+.-..++.
T Consensus       296 ~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLi  372 (618)
T PF05053_consen  296 PTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELI  372 (618)
T ss_dssp             --HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHH
Confidence            45788999999999999995554   34555777788999999999999998887764 477664 57788776666554


Q ss_pred             HHHh
Q 017649          357 AEAS  360 (368)
Q Consensus       357 ~el~  360 (368)
                      -.+.
T Consensus       373 P~~l  376 (618)
T PF05053_consen  373 PNVL  376 (618)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=83.78  E-value=3.7  Score=41.90  Aligned_cols=62  Identities=31%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHH
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA  330 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kA  330 (368)
                      ++.+...||+.|-..|++++|+++..++|+.        .|...-.++.-|+++-..|++.+|...+.+|
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~A  254 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEA  254 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999873        3555566778899999999999888876643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.62  E-value=21  Score=31.53  Aligned_cols=61  Identities=15%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~k  329 (368)
                      +.-.++..+.+.+++++|+..++.++.     ++.+.-...+.-.+||++...+|++++|++.+..
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            345688899999999999998888775     5567777788889999999999999999987764

>PLN02789 farnesyltranstransferase

Probab=83.34  E-value=23  Score=33.84  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=52.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhhHHhhcCCCC----------
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFH----------  300 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~~e~~~g~~h----------  300 (368)
                      ..++.++|+.++.+++.+     .|.|+.   +...-+.++..+| ++++|+..+.+++....+-|...|          
T Consensus        49 ~~e~serAL~lt~~aI~l-----nP~~yt---aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         49 SDERSPRALDLTADVIRL-----NPGNYT---VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             cCCCCHHHHHHHHHHHHH-----CchhHH---HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence            456778888888877654     344443   3444455555556 567777777766643322222111          


Q ss_pred             ------------------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 ------------------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 ------------------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                                        |.-..++...+-++..+|++++|+.++.+++++
T Consensus       121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence                              111122223344455567777888877777764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.99  E-value=8.7  Score=33.25  Aligned_cols=72  Identities=15%  Similarity=0.076  Sum_probs=56.5

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      .+-.++..++..|.+.||+++|++.+.++.+   ..-++.  ......+++-.+....+++..+.+++.||..+.+.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARD---YCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            4556778899999999999999999888655   222322  33455667777888889999999999999998888

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.94  E-value=16  Score=36.69  Aligned_cols=91  Identities=14%  Similarity=0.036  Sum_probs=56.4

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-----------
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-----------  300 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h-----------  300 (368)
                      ...+.+.-+++-++++++.        ++...++--|+.-  ...-..+|.++++++++.-+..+|...           
T Consensus       180 RERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            3345666666667776652        2233332222211  122356777777877777777766431           


Q ss_pred             ------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          301 ------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       301 ------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                            .........||...+.+|+.+||++.++.-++
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk  287 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK  287 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence                  11234556789999999999999999887765

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=82.80  E-value=0.73  Score=28.21  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAI  324 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~  324 (368)
                      +|.-...+++||.++...|++++|+
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3555577899999999999999986

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=82.66  E-value=6.4  Score=41.83  Aligned_cols=74  Identities=22%  Similarity=0.246  Sum_probs=50.2

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      ..-|-.++|..+|+++.+                .+-|-+.|..+|.|.+|+++.+.          .+-..+-..+++.
T Consensus       811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y  864 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY  864 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence            344556666666665532                23355568888999999886543          1223344677888


Q ss_pred             hhHhhhcCChHHHHHHHHHH
Q 017649          311 GKLEWFLGDTENAIKSMTEA  330 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kA  330 (368)
                      |+-+...++.+.|+.+|+|+
T Consensus       865 A~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhc
Confidence            88888889999999999884

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.55  E-value=11  Score=35.36  Aligned_cols=72  Identities=22%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                      ......+..|...|.+.+|++++++++.        .||.--.....|-.++...|+--+|.++|.+-.+.+++.+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            3445567788889999999999999885        56666666777777888999999999999999999999999763

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.39  E-value=1.4  Score=25.11  Aligned_cols=24  Identities=13%  Similarity=0.141  Sum_probs=20.9

Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~k  329 (368)
                      ..+.||.+++.+|+.++|+..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=82.06  E-value=27  Score=36.72  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH------Hhh--------------cccCCccccHH
Q 017649          203 QCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEK------LQK--------------KLYHPFSVNLM  262 (368)
Q Consensus       203 ~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~------~~~--------------~~l~~~h~~l~  262 (368)
                      .||.-....-++++-.-.......|+..---|+|++|.++|-.+.+      ++.              .--+.++...-
T Consensus       717 rc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e  796 (1189)
T KOG2041|consen  717 RCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKE  796 (1189)
T ss_pred             hhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHH
Confidence            4555444433444322222223344444445677777766533211      111              11133455556


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhh------------------hhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLT------------------IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI  324 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~------------------l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~  324 (368)
                      .+..+++..+.++..|++|.+|+...                  ++..-+.+|.+|+.+-    .+|......|.-++|+
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp----~~a~mf~svGMC~qAV  872 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLP----VMADMFTSVGMCDQAV  872 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHH----HHHHHHHhhchHHHHH
Confidence            77888999999999999999887652                  2334466888887653    2333333344444444


Q ss_pred             H
Q 017649          325 K  325 (368)
Q Consensus       325 ~  325 (368)
                      .
T Consensus       873 ~  873 (1189)
T KOG2041|consen  873 E  873 (1189)
T ss_pred             H
Confidence            4

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.72  E-value=12  Score=34.30  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             cCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          254 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       254 l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      |.|+-..-...+...+.+|....+|++|-..++++.+.+|.--..+|.  +.++-..|.+.-...++.|++.+++||...
T Consensus        23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA--AKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA--AKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            555555556667777788888888888888888888888765555554  344555566666666777777777777665


Q ss_pred             hccc
Q 017649          334 LRIT  337 (368)
Q Consensus       334 ~~~~  337 (368)
                      +...
T Consensus       101 Y~E~  104 (308)
T KOG1585|consen  101 YVEC  104 (308)
T ss_pred             HHHh
Confidence            5444

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=80.98  E-value=5.6  Score=39.52  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +-++|..+....+|+.|+.+|.+++++     +|+...+..   +=+.++...++|..|+.=+.++++        ..|.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~a---nRa~a~lK~e~~~~Al~Da~kaie--------~dP~   70 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFA---NRALAHLKVESFGGALHDALKAIE--------LDPT   70 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeec---hhhhhheeechhhhHHHHHHhhhh--------cCch
Confidence            344566667778999999999998874     454443322   223667888999999887777775        3377


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      ....|+.=|.....++++.+|...|++...     .-|+-|..+.
T Consensus        71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~-----l~Pnd~~~~r  110 (476)
T KOG0376|consen   71 YIKAYVRRGTAVMALGEFKKALLDLEKVKK-----LAPNDPDATR  110 (476)
T ss_pred             hhheeeeccHHHHhHHHHHHHHHHHHHhhh-----cCcCcHHHHH
Confidence            777777778888888888888888777654     2355554433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=80.90  E-value=36  Score=36.61  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCC-ccccH----HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHP-FSVNL----MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~-~h~~l----~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      |....++.++.+|..+..++...    +++ .+...    +....--+.+....|+.++|+++++.++.    .+|...+
T Consensus       422 aW~~~s~~r~~ea~~li~~l~~~----l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~~~  493 (894)
T COG2909         422 AWLLASQHRLAEAETLIARLEHF----LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEAAY  493 (894)
T ss_pred             HHHHHHccChHHHHHHHHHHHHH----hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccccc
Confidence            44456777888887777666543    222 22211    11111223345567899999999998875    3454444


Q ss_pred             H-HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          302 L-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       302 ~-~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      . ..+.+..+|.+..-.|++.+|..+.++|.++.+..
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~  530 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH  530 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence            4 56788899999999999999999999999887765

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=80.74  E-value=37  Score=33.02  Aligned_cols=81  Identities=15%  Similarity=0.288  Sum_probs=57.5

Q ss_pred             CHHHHHHHHH----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---------------------ccccHHH
Q 017649          209 SKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLMQ  263 (368)
Q Consensus       209 ~~~~~~~~~~----~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~---------------------~h~~l~~  263 (368)
                      +++.+..+++    .+.++...+..+..+|+++.|.++.++++-..++.+|+                     .|..+..
T Consensus        25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl  104 (360)
T PF04910_consen   25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL  104 (360)
T ss_pred             CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence            4455555554    46777888888889999999999999887665544333                     2444455


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      +...-+..+...|-|.-|+++|+-++
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLl  130 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLL  130 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            66666677778899999999888654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.63  E-value=10  Score=36.53  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHh
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  308 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~  308 (368)
                      .+.+..+|..|+.+++-.+...       .-.--.+...++.++..+|+|++|+..+.-+.+       .+.|. +-.-.
T Consensus        31 dfls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~v   95 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGV   95 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccch
Confidence            4557778988988876543221       111123445689999999999999887665543       11111 23346


Q ss_pred             hhhhHhhhcCChHHHHHHHHHH
Q 017649          309 TCGKLEWFLGDTENAIKSMTEA  330 (368)
Q Consensus       309 ~La~l~~~~g~~~eA~~~l~kA  330 (368)
                      +||...+.+|+|.+|...-.+|
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhC
Confidence            7888999999999998876654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=80.55  E-value=6.1  Score=41.85  Aligned_cols=61  Identities=11%  Similarity=0.031  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      +++.|+..|...|++++|++++++....   -..|++    ..+..+...+...|..++|..++.+..
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~---g~~Pd~----~T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAE---GVAPNH----VTFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            4556667777777777777776664421   111221    223333334444555555555554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=80.39  E-value=4.4  Score=30.93  Aligned_cols=50  Identities=26%  Similarity=0.304  Sum_probs=35.9

Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHH----------------hhccccCCCCchHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVE----------------ILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~----------------i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      -..+.+|..+...|++++|++.+-+.+.                ++ ..+|+.||.+..-..+|..+
T Consensus        23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f-~~lg~~~plv~~~RRkL~~l   88 (90)
T PF14561_consen   23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF-ELLGPGDPLVSEYRRKLASL   88 (90)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH-HHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH-HHcCCCChHHHHHHHHHHHH
Confidence            5668899999999999999998765442                22 23689999998888887654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=80.15  E-value=8.1  Score=37.84  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=65.1

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHH---------HHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK---------LIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~---------La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      +...++.+.|+..+++.++     ++|.|...-.+...         =+.-..+.|+|.+|.+.+..+|.+-    |.+-
T Consensus       213 ~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id----P~n~  283 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID----PSNK  283 (486)
T ss_pred             cccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC----cccc
Confidence            4455677777777777664     56666654433322         2333346688999999999888643    3333


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      -..+..|.+.|.+...+|+..+|+.--..|+.|
T Consensus       284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al~i  316 (486)
T KOG0550|consen  284 KTNAKLYGNRALVNIRLGRLREAISDCNEALKI  316 (486)
T ss_pred             chhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence            445788889999999999999998876666653

>PLN03077 Protein ECB2; Provisional

Probab=80.12  E-value=16  Score=39.80  Aligned_cols=90  Identities=16%  Similarity=0.101  Sum_probs=63.2

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      +..+...|+.++|++++++....   -+.|+...    ...+..+|...|++++|.+++....+.    +| ..|.. .+
T Consensus       561 I~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~  627 (857)
T PLN03077        561 LTGYVAHGKGSMAVELFNRMVES---GVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KH  627 (857)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc---CCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HH
Confidence            34455778889999888876532   23454333    445667888999999999988776533    23 22322 56


Q ss_pred             HhhhhhHhhhcCChHHHHHHHHH
Q 017649          307 YYTCGKLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       307 l~~La~l~~~~g~~~eA~~~l~k  329 (368)
                      +..+..++...|++++|.+++++
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~  650 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINK  650 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHH
Confidence            77788889999999999998876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		1e-27
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		1e-27
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		1e-27
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-27
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		1e-27
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		1e-27
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		3e-27
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		7e-27
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		7e-27
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		2e-26
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		2e-20

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 172 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 231
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 232 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 268
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 269 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 319
Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct: 320 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 370
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 371 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 407

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 266
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 267 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 317
Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct: 318 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 368
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 369 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 171 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 230
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 231 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 267
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 268 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 318
Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct: 319 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 206 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 265
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 266 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 302
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 303 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 353
Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct: 354 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 404
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 405 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 441

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC----------------------- 266
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 267 -----QTQDKDADMLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAMC---QAIISSNS 317
Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +  +   + L   +EAL Y   T+  Y+  +P  HP+
Sbjct: 318 --ERLP-------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 368
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A+K++  A +I+R+THG
Sbjct: 369 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 405

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 160/349 (45%), Gaps = 31/349 (8%)
Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLILQWPEISINE 65
           R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +   +  E   N+
Sbjct: 111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLEFPDND 170
Query: 66  -IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
            +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +
Sbjct: 171 SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEI 230
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G EV  SYI+    T  R   L++ Y FTC C  C         ++ A +E  R   D
Sbjct: 231 KPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD-----KDKAKVE-IRKLSD 284
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                 +RD            +VR    + +           +  L  C   QE +S+  
Sbjct: 285 PPKAEAIRD------------MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSS-- 330
Query: 245 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 304
                   ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   + 
Sbjct: 331 --------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVA 382
Query: 305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
             +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 383 SMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 158/351 (45%), Gaps = 35/351 (9%)
Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
           R L    + P  T     L V    +H+  +D EK+ L+ + IA L       L++P+ S
Sbjct: 111 RILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS 170
Query: 63  INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
              +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 171 --SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228
Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            +  G EV  SYI+    T  R   L++ Y FTC C  C                     
Sbjct: 229 EIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECT-------------------- 268
Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
                    +D D      ++       E I+ +      + ++        +  E++  
Sbjct: 269 --------TKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEI 320
Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
            ++ ++    ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 321 CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
           +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 35/351 (9%)
Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
           R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +     L +P+  
Sbjct: 111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDN- 169
Query: 63  INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
            + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 170 -DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228
Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            +  G EV  SYI+    T  R   L++ Y FTC C  C         ++ A +E  R  
Sbjct: 229 EIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD-----KDKAKVE-IRKL 282
Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
            D      +RD            +VR    + +           +  L  C   QE +S+
Sbjct: 283 SDPPKAEAIRD------------MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSS 330
Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
                     ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 331 ----------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLN 380
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
           +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 381 VASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score =  117 bits (294), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 35/351 (9%)
Query: 8   RKLQNDNVIPSTTTDNYSL-VEALVAHMSDID-EKQLLLYAQIANLVNLI---LQWPEIS 62
           R L    + P  T     L V+   +H+  +D EK+ L+ + IA L +     L +P+  
Sbjct: 111 RILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFPDN- 169
Query: 63  INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 122
            + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 170 -DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228
Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            +  G EV  SYI+    T  R   L++ Y FTC C  C         ++ A +E  R  
Sbjct: 229 EIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKD-----KDKAKVE-IRKL 282
Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
            D      +RD            +VR    + +           +  L  C   QE +S+
Sbjct: 283 SDPPKAEAIRD------------MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSS 330
Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
                     ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   
Sbjct: 331 ----------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLN 380
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 353
           +   +   G+L   L       K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 381 VASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 43/277 (15%)
Query: 65  EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 124
           ++ E F+K+ CN+ TICN+E + +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 171 DLFEAFAKVICNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 230
Query: 125 PKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDD 184
             G E+ I Y++   ++  R+K L++QY F C C RC                       
Sbjct: 231 EVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRC----------------------- 267
Query: 185 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 244
                  +D D    T  +      +E +KKI  E+    K    L  C   Q ++S+  
Sbjct: 268 -----QTQDKDADXLTGDEQVWKEVQESLKKI-EELKAHWKWEQVLAXC---QAIISSNS 318
Query: 245 MIEKLQKKLYHPFSVNLMQTR--EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
             E+L         +N+ Q +  +      + L   +EAL Y   T   Y+  +P  HP+
Sbjct: 319 --ERLP-------DINIYQLKVLDCAXDACINLGLLEEALFYGTRTXEPYRIFFPGSHPV 369
Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG 339
            G+Q    GKL+   G    A K++  A +I R+THG
Sbjct: 370 RGVQVXKVGKLQLHQGXFPQAXKNLRLAFDIXRVTHG 406

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 52/336 (15%)
Query: 31  VAHMSDIDEKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICNSE-L 85
           V H  + ++K+L +     ++   +  WP    + S+  I+  F  + CN  T+ +   L
Sbjct: 136 VEHFGEEEQKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGL 190
Query: 86  RPLGTGLYPVISIINHSCLPNAVLVFE-GRLAVVRAVQH------------VPKGAEVLI 132
           + +G G++P + ++NH C PN  ++F  G    V+++ H            + +G E+ +
Sbjct: 191 QAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTV 250
Query: 133 SYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLR 192
           SYI+    +  R++ LK+QY F C+C  C K G  DD+                  FL  
Sbjct: 251 SYIDFLHLSEERRRQLKKQYYFDCSCEHCQK-GLKDDL------------------FLAA 291
Query: 193 DSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK 252
             D K           S+E +K++        +K     S G + EVV   +   + Q+ 
Sbjct: 292 KEDPKP----------SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEP 341
Query: 253 LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK 312
           ++   ++ +++      ++L  L+ ++EA  Y +  +  Y ++Y   +  LG+     G 
Sbjct: 342 VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401
Query: 313 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 348
             W  G  E     + +A  IL +THG + P  K+L
Sbjct: 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-65
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  249 bits (636), Expect = 1e-79
 Identities = 78/356 (21%), Positives = 160/356 (44%), Gaps = 34/356 (9%)

Query: 1   MLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID-EKQLLLYAQIANLVNLILQWP 59
             ++  ++K+  +     T ++    V    +H+  +D EK+ L+ + IA L     ++ 
Sbjct: 109 TARILAKQKIHPER----TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYL 164

Query: 60  EI-SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVV 118
           E    + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA V
Sbjct: 165 EFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEV 224

Query: 119 RAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEG 178
           RAVQ +  G EV  SYI+    T  R   L++ Y FTC C  C                 
Sbjct: 225 RAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECREC----------------- 267

Query: 179 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 238
                        +D D      ++       E I+ +      + ++        +  E
Sbjct: 268 -----------TTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSE 316

Query: 239 VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 298
           ++   ++ ++    ++   +V ++    + + + + ++DW+ AL Y Q  I  Y + YP 
Sbjct: 317 LLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV 376

Query: 299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 354
           +   +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  ++E 
Sbjct: 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  233 bits (594), Expect = 3e-73
 Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 46/363 (12%)

Query: 2   LKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQ---- 57
           ++L  R   +  +  PS +   YS    L ++++ + E +     Q+       ++    
Sbjct: 103 VRLLGRVVFKLMDGAPSESEKLYSF-YDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQ 161

Query: 58  --WPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRL 115
                    ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G  
Sbjct: 162 DASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPH 221

Query: 116 AVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAI 175
            ++RAV+ +  G E+ I Y++   ++  R+K L++QY F C C RC         +++ +
Sbjct: 222 LLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQ-----TQDKDADM 276

Query: 176 LEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGN 235
           L G                                        EV    KK   L +   
Sbjct: 277 LTGDEQVWK----------------------------------EVQESLKKIEELKAHWK 302

Query: 236 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV 295
            ++V++  + I     +     ++  ++  +  +   + L   +EAL Y   T+  Y+  
Sbjct: 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362

Query: 296 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA 355
           +P  HP+ G+Q    GKL+   G    A+K++  A +I+R+THG     +++LIL LEE 
Sbjct: 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC 422

Query: 356 QAE 358
            A 
Sbjct: 423 DAN 425

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score =  214 bits (546), Expect = 2e-65
 Identities = 75/356 (21%), Positives = 143/356 (40%), Gaps = 45/356 (12%)

Query: 19  TTTDNYSLVEALVAHMSDI--DEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACN 76
            T      V+ L  H+     +E++ L       L     Q  + S+  I+  F  + CN
Sbjct: 121 LTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN 180

Query: 77  AHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGRL-------------AVVRAVQ 122
             T+ +   L+ +G G++P + ++NH C PN  ++F                   +RA+ 
Sbjct: 181 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240

Query: 123 HVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCK 182
            + +G E+ +SYI+    +  R++ LK+QY F C+C  C                     
Sbjct: 241 KISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHC--------------------- 279

Query: 183 DDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVST 242
                    +   D  F   +     S+E +K++        +K     S G + EVV  
Sbjct: 280 --------QKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKL 331

Query: 243 YKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL 302
            +   + Q+ ++   ++ +++      ++L  L+ ++EA  Y +  +  Y ++Y   +  
Sbjct: 332 CRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391

Query: 303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 358
           LG+     G   W  G  E     + +A  IL +THG + P  K+L     + + E
Sbjct: 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 40/272 (14%), Positives = 83/272 (30%), Gaps = 60/272 (22%)

Query: 123 HVPKGAEVLISYIETAGSTMTRQ---KALKEQYLFTCTCPRCIKLGQFDDIQESAILEGY 179
               G   L   + +    M ++   + L+  Y F  +      + + +  Q S +   Y
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-----PI-KTEQRQPSMMTRMY 112

Query: 180 -RCKDDGCSGFLLRDSD--DKGFTCQQCGLVRSKEEIKKIASEVNIL-------SKKTLA 229
              +D      L  D+    K    +    ++ ++ + ++    N+L        K  +A
Sbjct: 113 IEQRDR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 230 LTSCGNHQ---------------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 274
           L  C +++                  S   ++E LQK L +    N     +    I + 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLR 226

Query: 275 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWF------LGDTENAIKSM 327
           +   +  L           + Y   + LL L           F      L  T    K +
Sbjct: 227 IHSIQAELRRLLK-----SKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQV 277

Query: 328 TEAVEILRITHGTNSPFMKELILKLEEAQAEA 359
           T+ +     TH      +    + L   + ++
Sbjct: 278 TDFLSAATTTH----ISLDHHSMTLTPDEVKS 305

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 56/421 (13%), Positives = 127/421 (30%), Gaps = 125/421 (29%)

Query: 2   LKLYLRRKLQN----------DNV-IPST------------TTDNYSLVEALVA----HM 34
           ++  LRR L++           NV                 TT    + + L A    H+
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 35  SDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYP 94
           S       L   +   + +L+L++ +    ++           +        P       
Sbjct: 290 SLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPR----EVLTTN--------PR------ 328

Query: 95  VISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLF 154
            +SII  S + + +  ++         +HV    + L + IE   S++   +  + + +F
Sbjct: 329 RLSIIAES-IRDGLATWDN-------WKHV--NCDKLTTIIE---SSLNVLEPAEYRKMF 375

Query: 155 TCTCPRCIKLGQF-DDIQ-ESAILEGYRCKD---------DGCSGFLLRDSDDKGFTCQQ 203
                   +L  F       + +L                +    + L +   K  T   
Sbjct: 376 D-------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-- 426

Query: 204 CGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK----------- 252
                    I  I  E+ +  +   AL     H+ +V  Y + +                
Sbjct: 427 --------SIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 253 ----LYHPFSVNLMQTREKLIKILMELEDWKEA-LAYCQLTIPVYQRVYPQFHPLLGLQY 307
                +H  ++   +       + ++   + E  + +       +       + L  L++
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRH---DSTAWNASGSILNTLQQLKF 529

Query: 308 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKL---EEAQAEASY 361
           Y     + ++ D +   + +  A+         N   S +   L + L   +EA  E ++
Sbjct: 530 Y-----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

Query: 362 K 362
           K
Sbjct: 585 K 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	100.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	100.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	100.0
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.61
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.51
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.42
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.32
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.13
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.13
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	99.07
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	99.02
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.99
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.92
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	98.92
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.86
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	98.82
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	98.82
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	98.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.78
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.78
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	98.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.72
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.71
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	98.69
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	98.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.69
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	98.68
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	98.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.61
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.54
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.54
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.54
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.52
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.51
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.51
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.48
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.47
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.47
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.47
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.43
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	98.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.4
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.38
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.36
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.34
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.33
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.29
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.27
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.26
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.24
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.23
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.21
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.14
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.12
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.1
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.1
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.03
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.03
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.03
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.02
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.01
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.0
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.99
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.94
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.93
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.91
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.86
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.86
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.85
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	97.85
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.81
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.78
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.77
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.76
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.74
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.72
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.72
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	97.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.7
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.69
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.69
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.64
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.62
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.59
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.56
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.47
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.46
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.44
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.4
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	97.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.37
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.36
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.3
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.24
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.22
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.17
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	97.12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.12
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.09
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.01
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.01
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.98
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.94
3ray_A	237	PR domain-containing protein 11; structural genomi	96.93
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.9
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.9
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.87
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.79
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.62
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.49
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.48
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.22
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.86
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.74
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.71
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.54
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.5
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.49
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.38
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.05
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.26
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.11
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	92.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.15
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	91.55
2o8p_A	227	14-3-3 domain containing protein; signaling protei	91.46
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.43
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	90.5
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	90.28
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.61
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	88.61
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	88.54
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	88.54
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	88.25
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	85.93
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.74
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	84.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	84.56
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.81
2npm_A	260	14-3-3 domain containing protein; cell regulator p	83.5
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	83.17
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	82.7
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	82.49
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	82.05
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	82.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	82.01
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	81.88
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.03
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	81.02
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.67
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	80.53

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=100.00  E-value=5.3e-59  Score=465.48  Aligned_cols=325  Identities=22%  Similarity=0.393  Sum_probs=285.2

Q ss_pred             hhhHHhhhhcCCCcCCCCCcchhhHHHHHhcCcCCCCHHHHHHH-HHHHHHHHHHhC--CCCCCHHHHHHHHhhhhcccc
Q 017649            2 LKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLY-AQIANLVNLILQ--WPEISINEIAENFSKLACNAH   78 (368)
Q Consensus         2 ~r~~~~~~~~~~~~~~~~~~~~~~~v~~L~sh~~~~~~~~~~~~-~~~a~~~~~~l~--~~~~~~~~~~~~~~~~~~N~~   78 (368)
                      +|+|++.....+.    .+...|..|.+|++|.+++..++...+ ..++.++.. ++  ...++.++|..+++++.+|+|
T Consensus       108 lRiL~~~~~~~~~----~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~N~f  182 (490)
T 3n71_A          108 ARIMWRVEREGTG----LTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQY-WPPQSQQFSMQYISHIFGVINCNGF  182 (490)
T ss_dssp             HHHHHHHHHTTSS----BCTTCSSBGGGSCCCGGGCCHHHHHHHHHHHHHHHHH-SCTTSCCCCHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHhhccCcc----CcchhhhHHHHHHhhhhhcCchHHHHHHHHHHHHHHH-ccccccCCCHHHHHHHHHHHhccCc
Confidence            6778776544443    234567889999999999998776433 334555543 43  236889999999999999999


Q ss_pred             ccccCC-CCceeEEEccccccccCCCccCcEEEEeCC-------------EEEEEEccCCCCCCeeEEeccCCCCCHHHH
Q 017649           79 TICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGR-------------LAVVRAVQHVPKGAEVLISYIETAGSTMTR  144 (368)
Q Consensus        79 ~i~~~~-~~~~g~~lyp~~s~~nHsC~PN~~~~~~~~-------------~~~~~a~~~i~~geel~~~Y~~~~~~~~~R  144 (368)
                      +|.+.+ ..++|.||||.+|+|||||+||+.+.|+++             .++|+|+|||++||||||||++..+++.+|
T Consensus       183 ~i~~~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~~~~~~R  262 (490)
T 3n71_A          183 TLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEER  262 (490)
T ss_dssp             EEECTTSCSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSCSCHHHH
T ss_pred             ccccCCCCccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEeecCCCCCHHHH
Confidence            999876 568999999999999999999999999987             999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEeeccccCCcCcCCcchhhhhhhcCccCCCCCccceeecCCCCccccCCCCCCCCHHHHHHHHHHHHHHH
Q 017649          145 QKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILS  224 (368)
Q Consensus       145 ~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~  224 (368)
                      |+.|+++|+|.|.|.+|.++..     .+.++ ++.+                       +..++.+.+..+++.++...
T Consensus       263 ~~~L~~~~~F~C~C~~C~~~~~-----~~~~~-~~~~-----------------------~~~~s~e~v~~~l~~a~~~l  313 (490)
T 3n71_A          263 RRQLKKQYYFDCSCEHCQKGLK-----DDLFL-AAKE-----------------------DPKPSQEVVKEMIQFSKDTL  313 (490)
T ss_dssp             HHHHHHHHSSCCCCHHHHHTTT-----HHHHT-CBCS-----------------------SSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCeEeeCCCCCCCCc-----ccchh-hccc-----------------------CCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999632     22222 2211                       11345678888889999999


Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      +.+..+.++|++++|+.++++++++.++++|++|+.++.++++|+.+|..+|+|++|+.++++++++++++||++||.+|
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  360 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~  360 (368)
                      ..+++||.+|..+|++++|+.++++|++|++.++|++||.|.++.++|.++..|+.
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=100.00  E-value=5.3e-59  Score=458.76  Aligned_cols=321  Identities=22%  Similarity=0.431  Sum_probs=275.6

Q ss_pred             hhhHHhhhhcCCCcCCCCCcchhhHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhhhhccccc
Q 017649            2 LKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQW--PEISINEIAENFSKLACNAHT   79 (368)
Q Consensus         2 ~r~~~~~~~~~~~~~~~~~~~~~~~v~~L~sh~~~~~~~~~~~~~~~a~~~~~~l~~--~~~~~~~~~~~~~~~~~N~~~   79 (368)
                      +|+|++.+..++.    ++.+.+..|.+|++|.+++..++...+......+..+++.  ..++.++|.++++++.+|+|+
T Consensus       110 ~Ril~~~~~~~~~----~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~N~f~  185 (433)
T 3qww_A          110 ARILAKQKIHPER----TPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNCNGFT  185 (433)
T ss_dssp             HHHHHHHHHCCSC----CGGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHCEE
T ss_pred             HHHHHHhhhcccc----CchhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHcCCcee
Confidence            6777776655543    3456677888999999999887654433333333434432  346889999999999999999


Q ss_pred             cccCCCCceeEEEccccccccCCCccCcEEEEeCCEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeecc
Q 017649           80 ICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP  159 (368)
Q Consensus        80 i~~~~~~~~g~~lyp~~s~~nHsC~PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~  159 (368)
                      |.+++...+|.||||.+|+|||||+||+.+.|+|+.++|+|++||++||||||||++..+++.+||+.|+++|+|.|.|.
T Consensus       186 i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~  265 (433)
T 3qww_A          186 IEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECR  265 (433)
T ss_dssp             EECTTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCSH
T ss_pred             cccCCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeECC
Confidence            99988889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCcCCcchhhhhhhcCccCCCCCccceeecCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCChHHH
Q 017649          160 RCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV  239 (368)
Q Consensus       160 ~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~eA  239 (368)
                      +|.+++.      |....++++    |                  +.....+++..+.......++........|++++|
T Consensus       266 ~C~~~~~------d~~~~~~~~----~------------------~~~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA  317 (433)
T 3qww_A          266 ECTTKDK------DKAKVEVRK----L------------------SSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSEL  317 (433)
T ss_dssp             HHHHCTT------HHHHTCBCC----C------------------SSCCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             CCCCCCc------chhhhhhhh----c------------------CCCccHHHHHHHHHHHHHHHHHHHHhhhccCHHHH
Confidence            9999632      222222221    1                  11234456777776666777777766778999999


Q ss_pred             HHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCC
Q 017649          240 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD  319 (368)
Q Consensus       240 ~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~  319 (368)
                      +.++++++++.+++||++|+.++.++++|+.+|..+|+|++|+.++++++++++++||++||.+|..+++||.+|+.+|+
T Consensus       318 ~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~  397 (433)
T 3qww_A          318 LEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLEN  397 (433)
T ss_dssp             HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649          320 TENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       320 ~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                      +++|+.+|++|++|++.++|++||.+.++.++|++
T Consensus       398 ~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          398 KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES  432 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence            99999999999999999999999999999998763

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=100.00  E-value=5.5e-58  Score=451.87  Aligned_cols=316  Identities=27%  Similarity=0.461  Sum_probs=271.4

Q ss_pred             hhhHHhhhhcCCCcCCCCCcchhhHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHhhhhc
Q 017649            2 LKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWP------EISINEIAENFSKLAC   75 (368)
Q Consensus         2 ~r~~~~~~~~~~~~~~~~~~~~~~~v~~L~sh~~~~~~~~~~~~~~~a~~~~~~l~~~------~~~~~~~~~~~~~~~~   75 (368)
                      +|++++..-  +.   .+..+.|..|.+|++|.++++.++...+..++..+..+++..      ..+.+++.++++++.+
T Consensus       107 ~rill~~~~--~~---~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  181 (429)
T 3qwp_A          107 GRVVFKLMD--GA---PSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVIC  181 (429)
T ss_dssp             HHHHHHHHH--SC---CCGGGSSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhc--CC---CCchhhhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHHHh
Confidence            466776432  11   124456778999999999999877666666665566666432      2345689999999999


Q ss_pred             cccccccCCCCceeEEEccccccccCCCccCcEEEEeCCEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeE
Q 017649           76 NAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT  155 (368)
Q Consensus        76 N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~  155 (368)
                      |+|+|.+.+..++|.||||.+|+|||||.||+.+.|+|.+++|+|+|||++||||||||++..+++.+||+.|+++|+|.
T Consensus       182 N~f~i~~~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~~F~  261 (429)
T 3qwp_A          182 NSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE  261 (429)
T ss_dssp             HCEEEECTTSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHHCCC
T ss_pred             cCccccccccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccCCeE
Confidence            99999988888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccCCcCcCCcchhhhhhhcCccCCCCCccceeecCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 017649          156 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGN  235 (368)
Q Consensus       156 C~C~~C~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~  235 (368)
                      |.|.+|.++..     .+.++.               .. .                  .....++.+......+..+|+
T Consensus       262 C~C~~C~~~~~-----~~~~~~---------------~~-~------------------~~~~~~~~ll~~ie~~~~~g~  302 (429)
T 3qwp_A          262 CDCFRCQTQDK-----DADMLT---------------GD-E------------------QVWKEVQESLKKIEELKAHWK  302 (429)
T ss_dssp             CCSHHHHHTTT-----HHHHTC---------------SC-H------------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred             eeCCCCCCCcc-----cccccc---------------cc-h------------------hhhHHHHHHHHHHHHHHhhcc
Confidence            99999999631     111111               00 0                  011223444555666778899


Q ss_pred             hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh
Q 017649          236 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW  315 (368)
Q Consensus       236 ~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~  315 (368)
                      +++|++++++++++.++++|++|+.++.++++|+.+|..+|+|++|++++++++++++++||++||.+|..+++||.+|+
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~  382 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL  382 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649          316 FLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  361 (368)
Q Consensus       316 ~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~  361 (368)
                      .+|++++|+.+|++|++|++.++|++||.|.+++.+|+++.+|+.+
T Consensus       383 ~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  428 (429)
T 3qwp_A          383 HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRA  428 (429)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999874

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.61  E-value=1.7e-16  Score=143.03  Aligned_cols=82  Identities=29%  Similarity=0.420  Sum_probs=68.8

Q ss_pred             hhccccccccCCCCceeEEEccc-cccccCCCccCcEEEEe-CCEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhc
Q 017649           73 LACNAHTICNSELRPLGTGLYPV-ISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE  150 (368)
Q Consensus        73 ~~~N~~~i~~~~~~~~g~~lyp~-~s~~nHsC~PN~~~~~~-~~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~  150 (368)
                      ...|.|.+..+. ...+.++|+. ++++||||.||+...+. +.++.|+|+|+|++|||||++|++.+++          
T Consensus       154 ~~~n~f~i~~~~-~~~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~----------  222 (247)
T 3rq4_A          154 AGENDFSIMYST-RKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFG----------  222 (247)
T ss_dssp             TTTSCTTEEEET-TTTEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSS----------
T ss_pred             ccCCcEEEEecC-CcccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcC----------
Confidence            347888886543 3467899987 78999999999977654 6799999999999999999999999875          


Q ss_pred             CCCeEeeccccCCcC
Q 017649          151 QYLFTCTCPRCIKLG  165 (368)
Q Consensus       151 ~~~F~C~C~~C~~~~  165 (368)
                      .+.|.|.|.+|.+++
T Consensus       223 ~~~f~C~C~~C~~~~  237 (247)
T 3rq4_A          223 EKNEHCECHTCERKG  237 (247)
T ss_dssp             GGGTTCCCHHHHHHT
T ss_pred             CCCCEEECCCCCCCC
Confidence            468999999999863

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.51  E-value=5.3e-15  Score=134.56  Aligned_cols=85  Identities=24%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             HhhhhccccccccCCCCceeEEEccccccccCCCccCcEEEEeCC-EEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHH
Q 017649           70 FSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKAL  148 (368)
Q Consensus        70 ~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~~~~~~~~-~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L  148 (368)
                      +.....|.|.|..+.....+......++++||||.|||.+.++|. ++.++|+|||++|||||++|++..++        
T Consensus       180 ~~~~~~~dF~i~~s~~~~~a~~~g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~--------  251 (273)
T 3s8p_A          180 LLRHGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFG--------  251 (273)
T ss_dssp             HCCTTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTS--------
T ss_pred             HhhhcccccceeccccccccceecchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcC--------
Confidence            334457888876544333343344456899999999999888876 89999999999999999999998775        


Q ss_pred             hcCCCeEeeccccCCc
Q 017649          149 KEQYLFTCTCPRCIKL  164 (368)
Q Consensus       149 ~~~~~F~C~C~~C~~~  164 (368)
                        .+.|.|.|.+|.-.
T Consensus       252 --~~~f~C~C~~c~cr  265 (273)
T 3s8p_A          252 --ENNEFCECYTCERR  265 (273)
T ss_dssp             --GGGTTCCCHHHHHH
T ss_pred             --CCCeEEECCCCcCC
Confidence              35799999999764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.42  E-value=1e-12  Score=130.99  Aligned_cols=113  Identities=12%  Similarity=-0.065  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      +..+.+.|..+..+|+|++|+.++++++++.++++|++|+.++.++.+||.+|..+|+|++|+.+++++++++++++|++
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34556677788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ||.++..+..|+.++..++++++|+..|++|.+
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.34  E-value=3.9e-13  Score=108.41  Aligned_cols=54  Identities=22%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             eeEEEccccccccCCCccCcEEEEe--CCEEEEEEccCCCCCCeeEEeccCCCCCH
Q 017649           88 LGTGLYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEVLISYIETAGST  141 (368)
Q Consensus        88 ~g~~lyp~~s~~nHsC~PN~~~~~~--~~~~~~~a~~~i~~geel~~~Y~~~~~~~  141 (368)
                      -+..++|.++++||||.|||...++  +..+.++|+|+|++|||||++|++.+|..
T Consensus        57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~  112 (119)
T 1n3j_A           57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLS  112 (119)
T ss_dssp             EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred             ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence            5788999999999999999999887  45899999999999999999999998875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.32  E-value=6.3e-11  Score=106.41  Aligned_cols=139  Identities=17%  Similarity=0.180  Sum_probs=127.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++.+....++++++....+...++.+|...|++++|++++++++..++...|+.+
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34456677788899999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  359 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el  359 (368)
                      |..+..+.++|.++..+|++++|+.++++|+++.+...|+++|....+...+..+....
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ  182 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999998888888777765443

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=99.20  E-value=1.1e-11  Score=108.03  Aligned_cols=55  Identities=27%  Similarity=0.529  Sum_probs=41.1

Q ss_pred             ccccccCCCccCcEEEE---eC-CEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeec
Q 017649           95 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTC  158 (368)
Q Consensus        95 ~~s~~nHsC~PN~~~~~---~~-~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C  158 (368)
                      .++++||||.||+...+   +| ..+.++|+|+|++|||||++|.+..+..         .+.|.|.|
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~---------~~~~~C~C  182 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA---------SNKLPCNC  182 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC----------------CCBCCC
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC---------CCCceeEC
Confidence            34688999999998643   34 3789999999999999999999887642         36799998

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=1.5e-10  Score=103.96  Aligned_cols=128  Identities=14%  Similarity=0.041  Sum_probs=118.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      ....|++++|+..+++++....++.++.++....++..++.++...|++++|+.++++++...+..+|+++|..+..+..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34778999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      +|.++..+|++++|+.++++|+++.+...|+++|....+...+..+..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  138 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ  138 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888877776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.16  E-value=1.1e-09  Score=99.81  Aligned_cols=137  Identities=16%  Similarity=0.148  Sum_probs=124.5

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|+..+++++......++++++....+...++.++...|++++|++++++++...+..+|+.+|.
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (311)
T 3nf1_A           72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD  151 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH
Confidence            34456667788999999999999999888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  359 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el  359 (368)
                      .+..+..+|.++...|++++|+.++++|+++.+...|+++|....+...+..+....
T Consensus       152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  208 (311)
T 3nf1_A          152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ  208 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999998888887777665443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.13  E-value=2.3e-10  Score=112.18  Aligned_cols=97  Identities=10%  Similarity=-0.021  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+.+.+..+..+|+|++|+.++++++.+.++++|++|+.++..+.+||.+|..+|++++|+.+++++++++++.+|++|
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H  409 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH  409 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44556667778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhhHhhhc
Q 017649          301 PLLGLQYYTCGKLEWFL  317 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~  317 (368)
                      |.+...+.+|+.+...+
T Consensus       410 p~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          410 SLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999999998876543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.13  E-value=2.3e-10  Score=112.19  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      +..+.+.|..+..+|+|++|+.++++++.+.++++|++|+.++.++++||.+|..+|+|++|+.+++++++++++.+|++
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~  419 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD  419 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence            34556677888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHhhhh
Q 017649          300 HPLLGLQYYTCG  311 (368)
Q Consensus       300 hp~~~~~l~~La  311 (368)
                      ||.+.....+|.
T Consensus       420 Hp~~~~l~~~l~  431 (433)
T 3qww_A          420 HPYISEIKQEIE  431 (433)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHh
Confidence            999988777664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=1.3e-09  Score=99.45  Aligned_cols=136  Identities=15%  Similarity=0.089  Sum_probs=123.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+...+..+...|++++|+..+++++.+.....++.++....+...++.++...|++++|+.++++++...+..+|+++|
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            44556667778999999999999999988777777788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      ..+..++.+|.++...|++++|+.++++|+++.+..+|+++|....+...+..+..
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  164 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ  164 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888777766643

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=99.07  E-value=4.2e-11  Score=102.12  Aligned_cols=54  Identities=22%  Similarity=0.233  Sum_probs=44.0

Q ss_pred             cccccCCCccCcEEE--EeCC--EEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHh
Q 017649           96 ISIINHSCLPNAVLV--FEGR--LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK  149 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~--~~~~--~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~  149 (368)
                      +.++||||.|||...  +.++  ++.++|+|||++|||||++|.+.......|+..|+
T Consensus       108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~L~  165 (166)
T 3f9x_A          108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEAHPWLK  165 (166)
T ss_dssp             GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHHHHHCGGGG
T ss_pred             hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhHhhhCchhc
Confidence            467899999998664  3333  68899999999999999999999877776666654

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=99.02  E-value=1.3e-10  Score=103.65  Aligned_cols=59  Identities=24%  Similarity=0.301  Sum_probs=44.9

Q ss_pred             Ecccc-ccccCCCccCcEEEE--eC--CEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeecc
Q 017649           92 LYPVI-SIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP  159 (368)
Q Consensus        92 lyp~~-s~~nHsC~PN~~~~~--~~--~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~  159 (368)
                      .+... .++||||.||+.+.+  .+  .++.|+|+|+|++|||||++|.+..+..         ...|.|.|.
T Consensus       142 ~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~---------~~~~~C~CG  205 (222)
T 3ope_A          142 RMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV---------EKQQLCKCG  205 (222)
T ss_dssp             SEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC---------SCCCBCCCC
T ss_pred             cccccceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC---------cCCCEeeCC
Confidence            34433 478999999997654  23  3688999999999999999999877643         345777765

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=98.99  E-value=2.5e-10  Score=102.57  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=46.6

Q ss_pred             eeEEEccc-cccccCCCccCcEEEE--eC--CEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeecc
Q 017649           88 LGTGLYPV-ISIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP  159 (368)
Q Consensus        88 ~g~~lyp~-~s~~nHsC~PN~~~~~--~~--~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~  159 (368)
                      +..+.+.. +.++||||.||+.+.+  .+  .++.|+|+|+|++|||||++|....+.          ...|.|.|.
T Consensus       157 IDa~~~Gn~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~----------~~~~~C~CG  223 (232)
T 3ooi_A          157 IDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG----------NGKTVCKCG  223 (232)
T ss_dssp             EEEEEEECGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTT----------CTTCBCCCC
T ss_pred             EeccccccccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCC----------CCCcEeECC
Confidence            44444544 4578999999997743  22  468899999999999999999877653          345888874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.96  E-value=1.7e-08  Score=81.37  Aligned_cols=104  Identities=12%  Similarity=0.094  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ....+.+..+..+|++++|+..|.+++.+     .|.+   ..++.+++.+|..+|+|++|++.+++++++... .+..+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~   79 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhh
Confidence            34445667788999999999999999875     3443   556889999999999999999999999987654 45678


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +.++..++++|.++..+|++++|+.++++|+.+
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            889999999999999999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.92  E-value=2.9e-08  Score=78.78  Aligned_cols=122  Identities=11%  Similarity=0.017  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ++..+..+...|++++|+..+++++..     .|+++....+...++.++...|++++|+.++++++..     .|.++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence            345666778899999999999988764     4667766788889999999999999999999998874     356766


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  359 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el  359 (368)
                      ....++.+|.++..+|++++|+..+++++...     |+++........+..+...+
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~~~  126 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRLGQ  126 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhhh
Confidence            77889999999999999999999999999853     78888888888887765544

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=98.90  E-value=1e-09  Score=109.22  Aligned_cols=93  Identities=14%  Similarity=0.115  Sum_probs=77.7

Q ss_pred             CCCHHHHHHHHhhhhccccccccCCCCceeEEEccccccccCCCccCcE-EEEeCCEEEEEEccCCCCCCeeEEeccCCC
Q 017649           60 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAV-LVFEGRLAVVRAVQHVPKGAEVLISYIETA  138 (368)
Q Consensus        60 ~~~~~~~~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~~-~~~~~~~~~~~a~~~i~~geel~~~Y~~~~  138 (368)
                      .++.+.+...++.+.+++|.+...+....+.+++|.+.++||||.||.. +.++++.+.++|.++|++||||+|||++..
T Consensus       237 ~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~  316 (497)
T 3smt_A          237 SFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRS  316 (497)
T ss_dssp             CCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCC
T ss_pred             ccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCC
Confidence            4688889999999999999987666556789999999999999999643 344567899999999999999999999852


Q ss_pred             CCHHHHHHHHhcCCCeEeec
Q 017649          139 GSTMTRQKALKEQYLFTCTC  158 (368)
Q Consensus       139 ~~~~~R~~~L~~~~~F~C~C  158 (368)
                            ...|...|||.+.-
T Consensus       317 ------n~~Ll~~YGFv~~~  330 (497)
T 3smt_A          317 ------NAEFVIHSGFFFDN  330 (497)
T ss_dssp             ------HHHHHHHHSCCCTT
T ss_pred             ------hHHHHHHCCCCCCC
Confidence                  25677799998753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.87  E-value=5.5e-08  Score=78.29  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      +...+.+..++..|++++|++.|++++.+     .|.+   ..++.+++.+|..+|++++|+..++++++.     .|. 
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-   79 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSK-   79 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhh-
Confidence            34556777888999999999999998865     3433   456788999999999999999999999874     233 


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  346 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~  346 (368)
                        ....++++|.++..+|++++|+..|++|+++     -|+++...
T Consensus        80 --~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a~  118 (126)
T 4gco_A           80 --FIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEAR  118 (126)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred             --hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHHH
Confidence              3457899999999999999999999999985     46665443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.86  E-value=8.9e-08  Score=79.79  Aligned_cols=108  Identities=12%  Similarity=0.065  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc---CCc-------cccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPF-------SVNLMQTREKLIKILMELEDWKEALAYCQL  287 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l---~~~-------h~~l~~~~~~La~~~~~~g~~~~Al~~~~~  287 (368)
                      ..+..+.+.+..++..|++++|+..|.+++.+.....   .|.       ++....++.+++.+|..+|+|++|+.++.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456677788888999999999999999988743321   121       455667889999999999999999999999


Q ss_pred             hhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          288 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       288 ~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ++..        .|.....++.+|.++..+|++++|+..|++|+.+
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            9975        3444567899999999999999999999999987

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=98.82  E-value=9.4e-10  Score=101.69  Aligned_cols=64  Identities=28%  Similarity=0.470  Sum_probs=47.7

Q ss_pred             eeEEEccccc-cccCCCccCcEEE--EeC------CEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeec
Q 017649           88 LGTGLYPVIS-IINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTC  158 (368)
Q Consensus        88 ~g~~lyp~~s-~~nHsC~PN~~~~--~~~------~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C  158 (368)
                      +-...+...+ ++||||.||+...  |..      .++.++|+|+|++|||||++|.+.++...        ...|.|.|
T Consensus       208 IDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~~--------~~~~~C~C  279 (287)
T 3hna_A          208 IDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIK--------GKLFSCRC  279 (287)
T ss_dssp             EEEEEEECGGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHHH--------TTTCCCCC
T ss_pred             EeccccCCchheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcccccC--------CCcCEeeC
Confidence            4455666555 6699999999753  321      28999999999999999999997654321        34788988


Q ss_pred             c
Q 017649          159 P  159 (368)
Q Consensus       159 ~  159 (368)
                      .
T Consensus       280 G  280 (287)
T 3hna_A          280 G  280 (287)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=98.82  E-value=2e-09  Score=100.39  Aligned_cols=63  Identities=27%  Similarity=0.502  Sum_probs=35.0

Q ss_pred             cccccCCCccCcEEEE-eC-------CEEEEEEccCCCCCCeeEEeccCCCCCHHH-HHHHHhcCCCeEeec
Q 017649           96 ISIINHSCLPNAVLVF-EG-------RLAVVRAVQHVPKGAEVLISYIETAGSTMT-RQKALKEQYLFTCTC  158 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~~-~~-------~~~~~~a~~~i~~geel~~~Y~~~~~~~~~-R~~~L~~~~~F~C~C  158 (368)
                      +.++||||+||+.+.. .+       .++.++|+|+|++|||||++|.+..+.... .....+....|.|.|
T Consensus       221 arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~C  292 (302)
T 1ml9_A          221 TRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  292 (302)
T ss_dssp             GGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             HHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeC
Confidence            4588999999997643 22       279999999999999999999987765321 111122234577877

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=98.80  E-value=5.2e-09  Score=103.00  Aligned_cols=91  Identities=23%  Similarity=0.236  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHhhhhccccccccCC----CCceeEEEccccccccCCCccCcEEEEeCCEEEEEEccCCCCCCeeEEeccC
Q 017649           61 ISINEIAENFSKLACNAHTICNSE----LRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIE  136 (368)
Q Consensus        61 ~~~~~~~~~~~~~~~N~~~i~~~~----~~~~g~~lyp~~s~~nHsC~PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~  136 (368)
                      ++.+.....++.+.+-+|.+...+    ....+.++.|.+.++||||.||+.+.|+++.+.++|.++|++||||+|||++
T Consensus       184 ~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~  263 (449)
T 3qxy_A          184 RSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQ  263 (449)
T ss_dssp             CCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSS
T ss_pred             CcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCC
Confidence            567777777888888888764321    1246789999999999999999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHHHhcCCCeEee
Q 017649          137 TAGSTMTRQKALKEQYLFTCT  157 (368)
Q Consensus       137 ~~~~~~~R~~~L~~~~~F~C~  157 (368)
                      ..      ...|...|||...
T Consensus       264 ~~------n~~ll~~YGF~~~  278 (449)
T 3qxy_A          264 MA------NWQLIHMYGFVEP  278 (449)
T ss_dssp             CC------HHHHHHHHSCCCC
T ss_pred             CC------HHHHHHhCCCCCC
Confidence            33      2567779999874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.78  E-value=1.7e-07  Score=74.40  Aligned_cols=120  Identities=15%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+...+..+...|++++|+..+++++.+     .|.+   ..++.+++.++..+|+|++|+..+++++...        
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------   68 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------   68 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------
Confidence            45566777888999999999999998875     2333   4678889999999999999999999998752        


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      |.....++.+|.++..+|++++|+..+++|+++-...  ++.|...++...+..+...
T Consensus        69 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence            3334678999999999999999999999999875322  1234445556666655544

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=98.78  E-value=3.1e-09  Score=96.81  Aligned_cols=45  Identities=22%  Similarity=0.349  Sum_probs=37.0

Q ss_pred             cccccCCCccCcEEEE--e---CCEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           96 ISIINHSCLPNAVLVF--E---GRLAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~~--~---~~~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      +.++||||.|||...+  +   +..+.++|+|||++|||||++|.....+
T Consensus       187 aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~~  236 (261)
T 2f69_A          187 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSP  236 (261)
T ss_dssp             GGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSCC
T ss_pred             eeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcccc
Confidence            4688999999998875  2   3345899999999999999999866543

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=98.76  E-value=4.9e-09  Score=97.47  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             cccccCCCccCcEEE--EeC------CEEEEEEccCCCCCCeeEEeccCCCC
Q 017649           96 ISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETAG  139 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~--~~~------~~~~~~a~~~i~~geel~~~Y~~~~~  139 (368)
                      +.++||||+||+.+.  +.+      .++.++|+|+|++|||||++|.+..+
T Consensus       214 aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~  265 (299)
T 1mvh_A          214 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD  265 (299)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred             hheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCccc
Confidence            458899999999753  322      37999999999999999999988776

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.75  E-value=1.5e-07  Score=78.53  Aligned_cols=111  Identities=9%  Similarity=0.067  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+...+..+...|++++|+..+++++.+     .|.+   ..++.+++.+|..+|+|++|+..+++++...     |++
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----P~~  103 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-----KND  103 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----CCC
Confidence            44566777788999999999999998765     3444   4467889999999999999999999998743     455


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      |   ..++++|.++..+|++++|+..|++|+++.     |+++........|
T Consensus       104 ~---~~~~~lg~~~~~lg~~~eA~~~~~~al~l~-----~~~~~~~~A~~ll  147 (151)
T 3gyz_A          104 Y---TPVFHTGQCQLRLKAPLKAKECFELVIQHS-----NDEKLKIKAQSYL  147 (151)
T ss_dssp             C---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCHHHHHHHHHHH
Confidence            5   457899999999999999999999999863     5666444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.75  E-value=1.8e-07  Score=78.55  Aligned_cols=115  Identities=14%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---c-cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHh
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---F-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  294 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~---~-h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~  294 (368)
                      +...+.+.+..+...|++++|+..|.+++++.-.....   + .+.-..++.+++.++..+|+|++|+..+.++|+++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            44566778888889999999999999999875331000   1 1122348899999999999999999999999998655


Q ss_pred             hcCCCChHHHHHH----hhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          295 VYPQFHPLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       295 ~~g~~hp~~~~~l----~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      . +.-.|..+..+    ++.|.++..+|++++|+..|++|+++-
T Consensus        90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            5 35567777778    999999999999999999999999874

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.72  E-value=5.5e-07  Score=75.05  Aligned_cols=98  Identities=12%  Similarity=0.091  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..+...+..+...|++++|+..+++++.+.     |.+   ..++.+++.+|..+|+|++|+.++++++...        
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------   75 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVD--------   75 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Confidence            445667777889999999999999988752     333   4567889999999999999999999998752        


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      |.....++++|.++..+|++++|+..|++|+++-
T Consensus        76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3335678999999999999999999999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.71  E-value=5.3e-07  Score=73.09  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++......  ++......+...++.++...|++++|++++++++...+..  .+.
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~   85 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDR   85 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCc
Confidence            345556667778899999999999998876542  2344556788899999999999999999999999988765  455


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      +..+..+..+|.++...|++++|+.++++|+++.....  +++........+..+..
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHH
Confidence            66788899999999999999999999999999876552  34444555555555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.71  E-value=4.6e-07  Score=73.87  Aligned_cols=120  Identities=13%  Similarity=0.099  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++..     .|.++   .++..++.++...|++++|+..+++++..     .|.+
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~   85 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALM-----DINE   85 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC
Confidence            34556677788999999999999988764     34443   45678999999999999999999999874     3455


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  361 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~  361 (368)
                      |.   .++++|.++..+|++++|+..+++|+++.     |++|....+..........+..
T Consensus        86 ~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           86 PR---FPFHAAECHLQLGDLDGAESGFYSARALA-----AAQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             TH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCGGGHHHHHHHHHHHHHHHH
T ss_pred             cH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHHh
Confidence            54   46899999999999999999999999864     4667666666666655555543

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=98.69  E-value=1.3e-08  Score=84.70  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=40.2

Q ss_pred             cccccCCCcc---CcEEEEeCCEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           96 ISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        96 ~s~~nHsC~P---N~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      +.++||||.|   |+...-.+.++.++|+|+|++||||++.|.+..++
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~~~  147 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP  147 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence            4588999999   99887677899999999999999999999987765

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=98.69  E-value=1.5e-08  Score=94.24  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=36.3

Q ss_pred             ccccccCCCccCcEEE--EeC------CEEEEEEccCCCCCCeeEEeccCCC
Q 017649           95 VISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETA  138 (368)
Q Consensus        95 ~~s~~nHsC~PN~~~~--~~~------~~~~~~a~~~i~~geel~~~Y~~~~  138 (368)
                      .+.++||||.||+.+.  +.+      .++.++|+|+|++|||||++|.+..
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~  266 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKG  266 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSS
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCc
Confidence            4568999999999764  321      3789999999999999999998763

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.69  E-value=5.2e-07  Score=74.59  Aligned_cols=117  Identities=12%  Similarity=0.120  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .......+..+...|++++|+..+++++..     .|.++   .+...++.++..+|+|++|+..+++++..     .|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~   87 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS---RFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIX   87 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence            344566777888999999999999988764     34443   45678999999999999999999999874     245


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      +|   ..++++|.++..+|++++|+..|++|+++.     |++|....+......+..
T Consensus        88 ~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           88 EP---RFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             CT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHHHHH
T ss_pred             Cc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHHHHH
Confidence            55   457899999999999999999999999764     355655555555444433

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=98.68  E-value=1.4e-08  Score=94.02  Aligned_cols=49  Identities=18%  Similarity=0.231  Sum_probs=39.7

Q ss_pred             Eccc-cccccCCCccCcEEEE---eC--CEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           92 LYPV-ISIINHSCLPNAVLVF---EG--RLAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        92 lyp~-~s~~nHsC~PN~~~~~---~~--~~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      .+.. +.++||||.||+.+..   ++  .++.++|+|+|++|||||++|.+.++.
T Consensus       201 ~~GN~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~  255 (290)
T 3bo5_A          201 YIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLN  255 (290)
T ss_dssp             EEECGGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTC
T ss_pred             ecCCchheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCcccc
Confidence            3443 4588999999998643   33  479999999999999999999987764

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=98.68  E-value=9.4e-09  Score=95.61  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=35.1

Q ss_pred             cccccCCCccCcEEEEe-----CCEEEEEEccCCCCCCeeEEeccCCC
Q 017649           96 ISIINHSCLPNAVLVFE-----GRLAVVRAVQHVPKGAEVLISYIETA  138 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~~~-----~~~~~~~a~~~i~~geel~~~Y~~~~  138 (368)
                      ++++||||.|||...+.     +..+.++|+|||++|||||++|....
T Consensus       241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~  288 (293)
T 1h3i_A          241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  288 (293)
T ss_dssp             GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred             eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCC
Confidence            44789999999988762     22358999999999999999997543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.65  E-value=5.8e-07  Score=85.48  Aligned_cols=126  Identities=10%  Similarity=0.030  Sum_probs=105.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|+..+++++.+...+  ++.+....+...++.+|..+|++++|+.++.+++++++.. +...+..+.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~  185 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHH
Confidence            6777788999999999999998875543  4455678899999999999999999999999999999875 555888899


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      .++++|.++..+|++++|+.++.+|+++....  ++++....+...+..+.
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y  234 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCK  234 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998766  34555555555555554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.64  E-value=7.8e-07  Score=84.57  Aligned_cols=131  Identities=12%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+.+++.+.... +...+....+..+++.+|..+|++++|+++++++++..+..  +++
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~  220 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQP  220 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CCh
Confidence            345566777788999999999999999987653 33366778899999999999999999999999999998876  678


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      +..+..++++|.++..+|++++|+.++++|+++.+....  .|....+...+..+.
T Consensus       221 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQIH  274 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHH
Confidence            888999999999999999999999999999999876643  133344444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.63  E-value=1.9e-06  Score=67.35  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++..... .++.+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~   75 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhH
Confidence            344556667788999999999999987652     333   456788999999999999999999999987653 35667


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +.....++.+|.++...|++++|+.++++++++
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            777889999999999999999999999999985

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.61  E-value=1.7e-06  Score=74.38  Aligned_cols=119  Identities=11%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc----------HHHHHHHHHHHHHhhhhHHHHHHHH
Q 017649          216 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN----------LMQTREKLIKILMELEDWKEALAYC  285 (368)
Q Consensus       216 ~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~----------l~~~~~~La~~~~~~g~~~~Al~~~  285 (368)
                      .......+...+..+...|++++|+..+.+++.+...  .+....          ...++.+++.++..+|+|++|+.++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3445566777888889999999999999999875422  111111          1367889999999999999999999


Q ss_pred             HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      .+++..        +|.....++.+|.++..+|++++|+..+++|+.+     .|+++.....+
T Consensus       112 ~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l  162 (198)
T 2fbn_A          112 SKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred             HHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHH
Confidence            999975        2334567899999999999999999999999986     45555444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.59  E-value=1e-06  Score=71.42  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++......  .+......+..+++.++...|++++|++++++++...+..  .+++
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~  126 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI  126 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchH
Confidence            44556777888999999999999998876543  3344557788899999999999999999999999988754  3567


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      ..+..+..+|.++...|++++|+.++++|+++.+.
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999998764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.58  E-value=1.8e-06  Score=73.55  Aligned_cols=113  Identities=8%  Similarity=0.047  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++.+....  ...+....+..+++.++...|++++|++++++++...+ ..|..++
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~  104 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHH
Confidence            44556666778899999999999998876543  23556678899999999999999999999999999987 4454555


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ..+..+.++|.++..+|++++|+.++++|+++.+..
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            888999999999999999999999999999986543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.57  E-value=1.8e-06  Score=79.24  Aligned_cols=130  Identities=10%  Similarity=0.028  Sum_probs=102.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+......|++++|+..+++++.....  .++....+.+..+++.+|..+|++++|+.+++++++.++.. +.+++..+.
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~  197 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVK  197 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHH
Confidence            444556778999999999999875322  22233456678999999999999999999999999988654 568888999


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  360 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~  360 (368)
                      .++++|.++..+|++++|+.++.+|+++....  .+++....+...+..+...+.
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999987654  234445566666666555444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=1.3e-06  Score=70.32  Aligned_cols=112  Identities=16%  Similarity=0.169  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++..     .|++.....+...++.++...|+|++|+.++++++..    . +.+ 
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~-~~~-   98 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----D-GGD-   98 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----T-SCC-
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----C-ccC-
Confidence            3455666778899999999999988653     4555555778889999999999999999999998875    2 233 


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                        ...++.+|.++..+|++++|+.++++++.+     .|+++.+...+..
T Consensus        99 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  141 (148)
T 2dba_A           99 --VKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRN  141 (148)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHH
Confidence              466789999999999999999999999975     4566655444433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.55  E-value=1.9e-06  Score=81.94  Aligned_cols=130  Identities=10%  Similarity=0.090  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++.+.... +........+..+++.+|..+|+|++|+++++++++..+..  ++.
T Consensus       142 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~  218 (378)
T 3q15_A          142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QND  218 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCH
Confidence            345566777788999999999999999886543 22234678889999999999999999999999999998765  455


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      +..+..+.+||.++..+|++++|+.++++|+++.+..   .+|........+..+.
T Consensus       219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~  271 (378)
T 3q15_A          219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTL  271 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHH
Confidence            6788999999999999999999999999999998876   3344445555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.54  E-value=3.5e-06  Score=67.18  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|+|++|+.++++++...     |.  
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~--   75 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALELD-----GQ--   75 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----ch--
Confidence            3455667778899999999999998775     2333   4578889999999999999999999998742     23  


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                       ....++.+|.++..+|++++|+..+++|+++-..
T Consensus        76 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           76 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence             3457889999999999999999999999987644

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.54  E-value=1.2e-06  Score=80.34  Aligned_cols=114  Identities=19%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++.+.... +........+..+++.+|..+|+|++|+.++++++++...  ...+
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~  232 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSM  232 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcH
Confidence            345566777888999999999999999775542 2222222378899999999999999999999999998753  4566


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHH-HHHHHHHHHhhccc
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRIT  337 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA-~~~l~kAl~i~~~~  337 (368)
                      ..++..++++|.++..+|++++| ..++++|+.+.+..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            77889999999999999999999 88899999998765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.54  E-value=1e-06  Score=80.88  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=97.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+...+..+...|++++|+..+++++...... +..+.....++.+++.+|..+|+|++|++++++++++....  ..++
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~  233 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMA  233 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHH
Confidence            45566777888999999999999999876543 34667778899999999999999999999999999988754  4667


Q ss_pred             HHHHHHhhhhhHhhhcCC-hHHHHHHHHHHHHhhccc
Q 017649          302 LLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRIT  337 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~-~~eA~~~l~kAl~i~~~~  337 (368)
                      ..+..++++|.++..+|+ +++|+.++++|+.+.+..
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            789999999999999995 599999999999998855

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.52  E-value=3.3e-06  Score=64.68  Aligned_cols=108  Identities=22%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .|.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~   71 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDW   71 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----Cccc
Confidence            44566677778899999999999988764     2333   456778999999999999999999998874     2333


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                         ...++.+|.++...|++++|+..+++++++     .|+++.....+
T Consensus        72 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l  112 (118)
T 1elw_A           72 ---GKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEGL  112 (118)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHHHHHHH
Confidence               456789999999999999999999999864     45665544433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.51  E-value=1.6e-06  Score=77.87  Aligned_cols=114  Identities=13%  Similarity=0.160  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ..++..+..+...|++++|+..+++++.     ..|.++....++..++.+|..+|+|++|+..+++++..+     |.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~   85 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QID   85 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCC
Confidence            3456677788899999999999998865     357777778899999999999999999999999998754     567


Q ss_pred             hHHHHHHhhhhhHhhh--------cCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          301 PLLGLQYYTCGKLEWF--------LGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       301 p~~~~~l~~La~l~~~--------~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      |.....++.+|.++..        +|++++|+..++++++..     |+++......
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~  137 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDAT  137 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHH
Confidence            7888899999999999        999999999999999853     6666666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.51  E-value=2.1e-06  Score=81.57  Aligned_cols=112  Identities=11%  Similarity=0.004  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|++.+++++.+....  ++......++.+|+.+|..+|++++|++++++++.+.+..   .+
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~  257 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP  257 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC
Confidence            344566777888999999999999999876543  3344677889999999999999999999999999988876   44


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      |..+..++++|.++..+|++++|+.++++|+++....
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            5567889999999999999999999999999987765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.48  E-value=1.7e-06  Score=83.96  Aligned_cols=116  Identities=10%  Similarity=0.056  Sum_probs=97.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccC-CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYH-PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~-~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .+......|++++|++.+++++++.....+ ..++..+.++.+++.+|..+|++++|+.++++++.+.+...++.++..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            455667889999999999999987654333 3467788889999999999999999999999999999999999999888


Q ss_pred             HHHhhhhhHhhhc--CChHHHHHHHHHHHHhhccccCCCCchHH
Q 017649          305 LQYYTCGKLEWFL--GDTENAIKSMTEAVEILRITHGTNSPFMK  346 (368)
Q Consensus       305 ~~l~~La~l~~~~--g~~~eA~~~l~kAl~i~~~~~G~~hp~~~  346 (368)
                      ..+.++|..+...  +++++|+..|++|+++     .|++|...
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~  175 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFT  175 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHH
Confidence            8888888776654  5689999999999986     46676543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.47  E-value=2.8e-06  Score=72.37  Aligned_cols=114  Identities=11%  Similarity=0.045  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++.+... .+........+..+++.++...|++++|+.++++++...+..  .+.
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~  143 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQ  143 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cch
Confidence            34555667778899999999999999887653 333344677889999999999999999999999999887643  344


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ...+..+..+|.++..+|++++|+.++++|+++.+..
T Consensus       144 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            5567788999999999999999999999999998766

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.47  E-value=2.9e-06  Score=77.78  Aligned_cols=127  Identities=10%  Similarity=0.012  Sum_probs=94.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH-H
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-G  304 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~-~  304 (368)
                      .+..+...|++++|+..+++++......  .+....+.+..+++.+|..+|+|++|+.+++++++.++.. | ..+.. .
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~-~~~~~~~  196 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-H-DNEEFDV  196 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C-CCHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-ccccchH
Confidence            3444567788999999888887654332  2223356788999999999999999999999999988754 3 33433 3


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      ..++++|.++..+|++++|+.++++|+++...  ..++.....+...+..+...
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999998743  34455555555555555433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.47  E-value=4e-06  Score=80.25  Aligned_cols=126  Identities=14%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc--------cCCccccHHHHHHHHHHHHHhhhhHHHHHHH
Q 017649          213 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAY  284 (368)
Q Consensus       213 ~~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~--------l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~  284 (368)
                      ..........+...+..+...|++++|+..|+++++.....        ....++....++.+++.+|..+|+|++|+++
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34455566777888889999999999999999998753321        0013455667889999999999999999999


Q ss_pred             HHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          285 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       285 ~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      ++++++.        +|.....++.+|.++..+|++++|+..|++|+++     .|+++.....+..
T Consensus       296 ~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~~~l~~  349 (370)
T 1ihg_A          296 CLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred             HHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence            9999974        3444677899999999999999999999999986     3555554444333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.46  E-value=1.7e-06  Score=71.49  Aligned_cols=108  Identities=10%  Similarity=-0.063  Sum_probs=86.4

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      +..|..+...|++++|++.+++++++     .|++   ..++..++.+|...|++++|+..++++++.     .|.++  
T Consensus        35 ~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~--   99 (150)
T 4ga2_A           35 FYFAKLYYEAKEYDLAKKYICTYINV-----QERD---PKAHRFLGLLYELEENTDKAVECYRRSVEL-----NPTQK--   99 (150)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCCH--
Confidence            45677788999999999999999875     3444   457888999999999999999999999874     24444  


Q ss_pred             HHHHhhhhhHhhhcCChHHHHH-HHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIK-SMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~-~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                       ..++++|.++...|++.+|.. ++++|+++     -|+||.+..+...|
T Consensus       100 -~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~~~l~~~l  143 (150)
T 4ga2_A          100 -DLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAVYKLKEQL  143 (150)
T ss_dssp             -HHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHHHHHHHHH
Confidence             468899999999999987665 56899875     58888877666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.46  E-value=1.7e-06  Score=90.17  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=41.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      .+.+..+..+|++++|++.|++++++        ++....++.+|+.+|..+|++++|+++++++++.        .|..
T Consensus        13 ~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~   76 (723)
T 4gyw_A           13 NNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTF   76 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            33344444455555555555554433        1112333444455555555555555544444432        1222


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      +..+++||.++..+|++++|+..|++|++
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~  105 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQ  105 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            23344444444444444444444444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.45  E-value=4.8e-06  Score=79.14  Aligned_cols=132  Identities=11%  Similarity=0.065  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  297 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g  297 (368)
                      ....+...+..+...|++++|+..+++++..     .|.++ ....++..++.+|...|++++|+.++++++...+..  
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--  119 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--  119 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--
Confidence            3445666777888999999999999998875     34444 345688899999999999999999999999988776  


Q ss_pred             CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649          298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  359 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el  359 (368)
                      .++|..+..++.+|.++...|++++|+.++++|+++....  .+++....+...+..+....
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHc
Confidence            5678899999999999999999999999999999998775  24555555555555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.44  E-value=1.1e-05  Score=66.16  Aligned_cols=100  Identities=14%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  297 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g  297 (368)
                      .........+..+...|++++|+..+++++..     .|.+   ..+...++.++...|+|++|+.++.+++...     
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----   77 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELD-----   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            34556677788888999999999999998764     2333   5567889999999999999999999998752     


Q ss_pred             CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                         |.....++.+|.++..+|++++|+.++++|+.+
T Consensus        78 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           78 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence               233456889999999999999999999999975

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.44  E-value=2.7e-06  Score=76.30  Aligned_cols=126  Identities=8%  Similarity=0.068  Sum_probs=100.8

Q ss_pred             HHHHHHHhhh--------cCChHHHHHHHHHHHHHhhcccCCccccHHHHH--------------HHHHHHHHhhhhHHH
Q 017649          223 LSKKTLALTS--------CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--------------EKLIKILMELEDWKE  280 (368)
Q Consensus       223 l~~~a~~~~~--------~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~--------------~~La~~~~~~g~~~~  280 (368)
                      +...+..+..        .|++++|+..+++++..     .|.+.....+.              ..++.+|...|+|++
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  166 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA  166 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            4445556666        88999999999988764     35566665555              788999999999999


Q ss_pred             HHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhc----------CChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649          281 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL----------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL  350 (368)
Q Consensus       281 Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~----------g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~  350 (368)
                      |+..+++++..+     |.++.....++.+|.++..+          |++++|+..++++++..     |++|.+.+...
T Consensus       167 A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~  236 (261)
T 3qky_A          167 AAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEE  236 (261)
T ss_dssp             HHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHH
Confidence            999999988743     46676777889999999877          88999999999998754     88999999998


Q ss_pred             HHHHHHHHHhhhh
Q 017649          351 KLEEAQAEASYKL  363 (368)
Q Consensus       351 ~L~~~~~el~~~~  363 (368)
                      .+..+..++..-.
T Consensus       237 ~l~~~~~~~~~~~  249 (261)
T 3qky_A          237 LYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            8888877665443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.43  E-value=6.5e-06  Score=75.59  Aligned_cols=106  Identities=12%  Similarity=-0.067  Sum_probs=88.0

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  306 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~  306 (368)
                      +..+...|++++|+..+.+++.+.... + +......++.+++.+|..+|++++|+.++++++.++...  .+....+..
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~  119 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF  119 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            334567899999999999999886543 2 234557889999999999999999999999999988653  344456788


Q ss_pred             HhhhhhHhhhc-CChHHHHHHHHHHHHhhcc
Q 017649          307 YYTCGKLEWFL-GDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       307 l~~La~l~~~~-g~~~eA~~~l~kAl~i~~~  336 (368)
                      +.++|.++... |++++|+.+|++|+++...
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~  150 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence            99999999996 9999999999999998763

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=98.41  E-value=2e-07  Score=91.47  Aligned_cols=89  Identities=20%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             CCCHHHHHHHHhhhhccccccccCCCCceeEEEccccccccCCCccCc---EEEEe--------CCEEEEEEccCCCCCC
Q 017649           60 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA---VLVFE--------GRLAVVRAVQHVPKGA  128 (368)
Q Consensus        60 ~~~~~~~~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~---~~~~~--------~~~~~~~a~~~i~~ge  128 (368)
                      ..+.+.+...++.+.+.+|.+.+.    -+.++.|.+.++||+|.||.   .+.++        +..++++|.++|++||
T Consensus       158 ~~t~~~f~wA~~~v~SRaf~~~~~----~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Ge  233 (440)
T 2h21_A          158 PVTLDDFFWAFGILRSRAFSRLRN----ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  233 (440)
T ss_dssp             CCCHHHHHHHHHHHHHHCBCCC-------CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTS
T ss_pred             CCCHHHHHHHHHHhcccceeccCC----CceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCC
Confidence            357888888889999999976432    36799999999999999974   33332        2479999999999999


Q ss_pred             eeEEeccCCCCCHHHHHHHHhcCCCeEee
Q 017649          129 EVLISYIETAGSTMTRQKALKEQYLFTCT  157 (368)
Q Consensus       129 el~~~Y~~~~~~~~~R~~~L~~~~~F~C~  157 (368)
                      ||+|||++.. +    ...|...|||.+.
T Consensus       234 ei~~sYG~~~-~----N~~LL~~YGFv~~  257 (440)
T 2h21_A          234 QVYIQYDLNK-S----NAELALDYGFIEP  257 (440)
T ss_dssp             BCEECSCTTC-C----HHHHHHHSSCCCS
T ss_pred             EEEEeCCCCC-C----HHHHHHhCCCCcC
Confidence            9999999863 1    1456669999765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.41  E-value=1.1e-05  Score=62.91  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .......+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++.+++..     .+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~   78 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----Ccc
Confidence            344556677778899999999999988764     2333   456788999999999999999999999874     233


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +   ...++.+|.++...|++++|+.++++++.+
T Consensus        79 ~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           79 Y---SKAYGRMGLALSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            3   456789999999999999999999999986

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.41  E-value=5e-06  Score=65.33  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++...     +.  
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~--   82 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLE-----PT--   82 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----TT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CC--
Confidence            4455666777899999999999988753     2333   4567889999999999999999999998742     23  


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                       ....++.+|.++..+|++++|+.++++++.+
T Consensus        83 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           83 -FIKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence             3456789999999999999999999999986

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.40  E-value=9.5e-07  Score=69.41  Aligned_cols=100  Identities=12%  Similarity=0.060  Sum_probs=76.7

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  312 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  312 (368)
                      .|++++|+..+++++.+     ++.++....++.+++.+|..+|++++|+.++++++..     .|.+   ...++.+|.
T Consensus         3 ~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~   69 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNH---QALRVFYAM   69 (117)
T ss_dssp             ----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHHH
Confidence            57888999999888753     2335667788999999999999999999999999874     2344   456789999


Q ss_pred             HhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649          313 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  350 (368)
Q Consensus       313 l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~  350 (368)
                      ++..+|++++|+..+++|+..     .|++|.+.....
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~  102 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAE-----TSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Confidence            999999999999999999875     355665544433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.38  E-value=9.7e-06  Score=73.66  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .+...+..+...|++++|+..+++++..     .|.++ ....+...++.++...|++++|++++++++...+..  +++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   79 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   79 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence            3455677778899999999999998875     34444 345788899999999999999999999999988776  567


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      |..+..+..+|.++...|++++|+.++++|+++....  ++++....+...+..+...
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~  135 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHA  135 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999988765  2333344444455444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.37  E-value=9e-06  Score=76.57  Aligned_cols=135  Identities=19%  Similarity=0.132  Sum_probs=109.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++.+....  .++.....+...++.++...|++++|+.++++++......  .+++
T Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~  304 (406)
T 3sf4_A          229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRI  304 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcH
Confidence            44556667788999999999999998876542  3455667888999999999999999999999999988765  3467


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHHhhh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  362 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el~~~  362 (368)
                      ..+..+..+|.++..+|++++|+.++++|+++....  .+.+....+...+..+...+...
T Consensus       305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHh
Confidence            778899999999999999999999999999998766  23445566677777776666544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.36  E-value=1.2e-05  Score=69.96  Aligned_cols=106  Identities=10%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHH----------------HHHHHHhhhhHHHHHHH
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK----------------LIKILMELEDWKEALAY  284 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~----------------La~~~~~~g~~~~Al~~  284 (368)
                      ..++..+..+...|++++|+..+++++...     |.+   ..++..                ++.+|...|++++|+..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-----IDR---TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----HHH---HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            445667778889999999999999987752     222   233344                99999999999999999


Q ss_pred             HHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          285 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       285 ~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      +++++...     |.+   ...++.+|.++..+|++++|+..|++|+++     .|+++....
T Consensus        77 ~~~al~~~-----p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~  126 (208)
T 3urz_A           77 YKELLQKA-----PNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANI  126 (208)
T ss_dssp             HHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             HHHHHHHC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence            99998742     333   466899999999999999999999999985     466664433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.35  E-value=2.4e-06  Score=67.97  Aligned_cols=94  Identities=11%  Similarity=-0.056  Sum_probs=76.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      +..+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+..+++++..     .|.++  
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~--   85 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI--   85 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--
Confidence            44556677889999999999998764     3443   456788999999999999999999998874     34444  


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                       ..++.+|.++..+|++++|+..+++++++
T Consensus        86 -~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           86 -AVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             46789999999999999999999999864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.35  E-value=1.5e-05  Score=74.94  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +...+..+...|++++|...+++++.+....  ........+..+++.++...|++++|++++++++...+...++.+|.
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            3444556677899999999999998875542  22334566788899999999999999999999999999887788899


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      .+..+..+|.++...|++++|+.++++|+++....
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999987654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.34  E-value=7.8e-06  Score=71.90  Aligned_cols=117  Identities=17%  Similarity=0.157  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .++..+..+...|++++|+..+++++..     .|.++....++..++.+|...|+|++|+..+++++..+     |.++
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~   75 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence            4556677788899999999999998764     46666677888999999999999999999999988643     5667


Q ss_pred             HHHHHHhhhhhHhhh------------------cCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWF------------------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  353 (368)
Q Consensus       302 ~~~~~l~~La~l~~~------------------~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~  353 (368)
                      .....++.+|.++..                  +|++++|+..++++++.     -|+++...+....+.
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~  140 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLV  140 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHH
Confidence            666677888877765                  57889999999998764     367776665554443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.34  E-value=2.1e-06  Score=83.43  Aligned_cols=91  Identities=9%  Similarity=-0.077  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  339 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G  339 (368)
                      ...+++.|+.++..+|++++|++++++++++.+...+ ..+|..+..+.++|.++..+|++++|+.++++|+.+.....+
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3566788999999999999999999999999988887 568999999999999999999999999999999999998888


Q ss_pred             CCCchHHHHHHH
Q 017649          340 TNSPFMKELILK  351 (368)
Q Consensus       340 ~~hp~~~~l~~~  351 (368)
                      +.++...++...
T Consensus       130 ~~~~~~~~~~~~  141 (472)
T 4g1t_A          130 PYRIESPELDCE  141 (472)
T ss_dssp             SSCCCCHHHHHH
T ss_pred             ccchhhHHHHHH
Confidence            777655554433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.34  E-value=7.9e-06  Score=76.92  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccC-------CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~-------~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      ........+..+...|++++|+..|++++.+......       ...+....++.+++.+|..+|+|++|+.++++++..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4455667778888999999999999999876421100       001223578899999999999999999999999975


Q ss_pred             HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          292 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       292 ~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .        |.....++++|.++..+|++++|+..|++|+++
T Consensus       226 ~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          226 D--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2        334567899999999999999999999999986

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.33  E-value=8.6e-06  Score=77.38  Aligned_cols=130  Identities=11%  Similarity=0.051  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++.+....  ........++..++.+|...|++++|+.++++++......  .+++
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  300 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GERE  300 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHH
Confidence            44456667788999999999999998876542  2344566788999999999999999999999999988765  5666


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      ..+..+..+|.++..+|++++|+.++++|+.+....  .+++....+...+..+..
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~  354 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHS  354 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999987766  233444445555555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.32  E-value=1.3e-05  Score=75.42  Aligned_cols=127  Identities=16%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      +...+..+...|++++|+..+++++..     .|.++ ....++..++.++...|++++|+.++++++...+..  .++|
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~   84 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQL   84 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccH
Confidence            445666778899999999999998875     34444 346788899999999999999999999999988766  5678


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      ..+..+..+|.++...|++++|+.++.+|+++.....  +++....+...+..+...
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999887662  333444445455444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.32  E-value=5.7e-06  Score=77.50  Aligned_cols=107  Identities=13%  Similarity=0.144  Sum_probs=83.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.+|...|++++|+.++++++..        +|.
T Consensus       216 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~  279 (365)
T 4eqf_A          216 QTGLGVLFHLSGEFNRAIDAFNAALTV-----RPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI--------QPG  279 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            445566677889999999999998875     2333   456788999999999999999999999875        344


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      ....++++|.++..+|++++|+.++++|+++.....|+.|+..
T Consensus       280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  322 (365)
T 4eqf_A          280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH  322 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence            4677899999999999999999999999999988888766543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.31  E-value=2.5e-05  Score=60.12  Aligned_cols=95  Identities=21%  Similarity=0.295  Sum_probs=76.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|++.+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .+.+  
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~--   76 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN--   76 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCcc--
Confidence            444556677889999999999988764     2333   356778999999999999999999998864     2333  


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                       ...++.+|.++...|++++|+.++++++++
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence             356788999999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.29  E-value=6.3e-06  Score=85.80  Aligned_cols=104  Identities=20%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ....+.+..+...|++++|+..+++++++        ++....++.+|+.+|..+|++++|+++++++++.        +
T Consensus        44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~  107 (723)
T 4gyw_A           44 AAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------N  107 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            45566778888999999999999999875        2334667899999999999999999999999974        3


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      |..+..+++||.++..+|++++|+..|++|+++     .|+++..
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~a  147 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKL-----KPDFPDA  147 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHH
Confidence            445667899999999999999999999999985     4555533

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.27  E-value=1.4e-05  Score=73.78  Aligned_cols=111  Identities=10%  Similarity=0.020  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+.+.+..+...|++++|+..+++++.+.... + +......++.+++.+|.. |++++|++++++++++++..  ...+
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~  152 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-G-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLR  152 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChh
Confidence            34455566677899999999999998876432 2 223456788899999988 99999999999999988753  2344


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ..+..+.++|.++..+|++++|+.++++|+.+....
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            567889999999999999999999999999987654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.26  E-value=2e-05  Score=71.56  Aligned_cols=131  Identities=15%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++.+....  +.......+...++.++...|++++|+.++++++......  .+++
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  260 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchh
Confidence            34455666778899999999999998875542  3345567788999999999999999999999999888764  4567


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      ..+..+..+|.++...|++++|+.++++|+++.....  +++....+...+..+...
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~  315 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTA  315 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999999876652  233444455555555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.26  E-value=1.1e-05  Score=74.46  Aligned_cols=122  Identities=16%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHH
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  307 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l  307 (368)
                      ..+...|++++|+..+.+++.+.... + +......++.+++.+|..+|++++|+.+++++++++...  .+....+..+
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~  119 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMAL  119 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence            44667899999999999998876543 2 234567888999999999999999999999999988643  3444567899


Q ss_pred             hhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          308 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       308 ~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      .++|.++.. |++++|+.+|++|+++.... |. .+....+...+..+.
T Consensus       120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~-~~~~~~~~~~lg~~~  165 (307)
T 2ifu_A          120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ER-LRQAAELIGKASRLL  165 (307)
T ss_dssp             HHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CC-hhHHHHHHHHHHHHH
Confidence            999999998 99999999999999988753 21 223344444554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.25  E-value=3.1e-06  Score=83.83  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=84.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|++.+++++++     +|   ....++.+++.+|..+|++++|+++++++++.        +|..+
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~-----~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~   74 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIEL-----NP---SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYI   74 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHh-----CC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCH
Confidence            3445567889999999999999875     23   33677889999999999999999999999875        44556


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      ..++++|.++..+|++++|++.+++|+++     .|+++.....+
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~l  114 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKY  114 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCTTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            77899999999999999999999999986     45555444333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.24  E-value=7.8e-06  Score=74.83  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+...+..+...|++++|+..+++++..     .|.+   ..++.+++.+|..+|+|++|+.++++++..        +|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p   69 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------DG   69 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Confidence            4556677788999999999999998875     3433   456789999999999999999999999874        33


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      .....++.+|.++..+|++++|+..+++|+++--
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            4456789999999999999999999999998643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.23  E-value=4e-05  Score=70.19  Aligned_cols=111  Identities=16%  Similarity=0.109  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ..+.+.+..+...|++++|+..+++++.+.... + +......++.+++.+|... |++++|+.++++++++....  ..
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~  153 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QS  153 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CC
Confidence            445566777788899999999999999876432 1 2233467888999999996 99999999999999987632  12


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      .+..+..+.++|.++..+|++++|+.++++|+++..
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            334466789999999999999999999999998653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.21  E-value=1.5e-05  Score=67.13  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+......+++++|...+.++..+     .|.+   ..+...++.++..+|++++|++.++++++.        +|....
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~  142 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIAL-----NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIR  142 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhh
Confidence            344555677888888877777653     2333   345678999999999999999999998864        233446


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .++++|.++..+|++++|+..+++|+++
T Consensus       143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          143 AYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            7889999999999999999999999975

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.21  E-value=1.9e-05  Score=77.52  Aligned_cols=108  Identities=16%  Similarity=0.240  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc--C-----CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY--H-----PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  290 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l--~-----~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~  290 (368)
                      .........+..+...|++++|+..|++++.+.....  .     ..+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            3445667778888899999999999999987642210  0     01223367888999999999999999999999997


Q ss_pred             hHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          291 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       291 ~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..        |.....++++|.++..+|++++|+..|++|+++
T Consensus       346 ~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          346 LD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            42        333567899999999999999999999999975

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.18  E-value=4.2e-05  Score=70.33  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .....+..+...|++++|+..+++++...     |.++ ....+...++.++...|++++|+.++++++..        +
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~  302 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------E  302 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            34455777888999999999999887643     3333 33456778999999999999999999999875        2


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      |.....++.+|.++...|++++|+..+++|+++     .|+++.....+..+
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~  349 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----NENDQQIREGLEKA  349 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHH
Confidence            333457889999999999999999999999975     46666554444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.16  E-value=2.1e-05  Score=68.87  Aligned_cols=97  Identities=15%  Similarity=0.047  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-----------hhHHHHHHHHHhhhh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP  290 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-----------g~~~~Al~~~~~~l~  290 (368)
                      .....+..+...|++++|+..+++++++     .|++   ..++.+++.++..+           |++++|+..++++++
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVAR-----TPRY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            3445666777899999999999998875     2433   45678899999999           999999999999987


Q ss_pred             hHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          291 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       291 ~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .     .|.++   ..++.+|.++..+|++++|+..+++|+++-
T Consensus       113 ~-----~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          113 V-----NPRYA---PLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             H-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             h-----CcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            4     23333   556788888888899999999888888764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.15  E-value=1.6e-05  Score=60.27  Aligned_cols=94  Identities=17%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++...     +. .....
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~-~~~~~   77 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLD-----PEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVI-----ED-EYNKD   77 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CC-TTCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhC-----cCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cc-cchHH
Confidence            3445668899999999999887652     333   4567789999999999999999999988642     22 11345


Q ss_pred             HHhhhhhHhhhc-CChHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFL-GDTENAIKSMTEAVEI  333 (368)
Q Consensus       306 ~l~~La~l~~~~-g~~~eA~~~l~kAl~i  333 (368)
                      .++.+|.++..+ |++++|+.++++++..
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            688999999999 9999999999998763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.15  E-value=7.9e-05  Score=70.00  Aligned_cols=126  Identities=13%  Similarity=0.060  Sum_probs=98.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h-~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ...+......|++++|...+++++...    ++.+ .....+...++.++...|++++|.+++++++...+..  ++...
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~   91 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHY   91 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHH
Confidence            334555668899999999999887643    2222 2345677889999999999999999999999988763  23345


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      .+..+..+|.++..+|++++|+.++++|+++.....++.+|........+..+
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  144 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  144 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence            57788999999999999999999999999999988777777666555555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.14  E-value=3.5e-05  Score=71.74  Aligned_cols=122  Identities=17%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|+..+++++.+     .|.+   ..++..++.++...|++++|+.++++++..        +|.
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~  283 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSV-----RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPG  283 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            344566677889999999999988765     2333   456788999999999999999999999875        234


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC---CchHHHHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKLEEAQAEAS  360 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~---hp~~~~l~~~L~~~~~el~  360 (368)
                      ....++.+|.++..+|++++|+.++++|+.+.....|+.   ++....+...|..+...+.
T Consensus       284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            456789999999999999999999999999877664443   4555566666666655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.12  E-value=6.1e-06  Score=68.04  Aligned_cols=94  Identities=14%  Similarity=0.048  Sum_probs=71.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      +.++|++++|+..++++..        .++.-......|+.+|...|+|++|+++++++++.-     |.+   ...++.
T Consensus         7 ~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~---~~a~~~   70 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERD---PKAHRF   70 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHH
Confidence            3455677777777766532        233334455689999999999999999999999752     344   467899


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      +|.++..+|++++|+..+++|+++     .|+++.
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~  100 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVEL-----NPTQKD  100 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHh-----CCCCHH
Confidence            999999999999999999999985     455553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.11  E-value=7.2e-05  Score=65.17  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=79.4

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh-
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-  301 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp-  301 (368)
                      ....+..+...|++++|+..+++++..        ++....++..++.+|..+|++++|+.++++++...    | .++ 
T Consensus        45 ~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p-~~~~  111 (228)
T 4i17_A           45 AYNCGVCADNIKKYKEAADYFDIAIKK--------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV----P-GNAT  111 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----T-TCHH
T ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----C-CcHH
Confidence            344566677889999999999888753        23355678889999999999999999999998643    3 333 


Q ss_pred             ---HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 ---LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ---~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                         .++..++.+|.++..+|++++|+..+++|+++
T Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A          112 IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence               34567899999999999999999999999985

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.10  E-value=7.3e-05  Score=62.45  Aligned_cols=115  Identities=7%  Similarity=0.026  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHH-HHhhhhH--HHHHHHHHhhhhhHHhhcCC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDW--KEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~-~~~~g~~--~~Al~~~~~~l~~~e~~~g~  298 (368)
                      .....+..+...|++++|+..+++++.+.     |.+   ..+...++.+ +...|++  ++|+.++++++..     .|
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-----~p  112 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-----DS  112 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-----CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----CC
Confidence            44556667788999999999999988653     333   3456788888 8889998  9999999998874     23


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      .++   ..++.+|.++...|++++|+.++++|+++     .|+++....+...+..+..
T Consensus       113 ~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~i~~~~~  163 (177)
T 2e2e_A          113 NEI---TALMLLASDAFMQANYAQAIELWQKVMDL-----NSPRINRTQLVESINMAKL  163 (177)
T ss_dssp             TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTSCHHHHHHHHHHHHH
T ss_pred             CcH---HHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHHHH
Confidence            333   56789999999999999999999999874     4555666677777666544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=4.2e-05  Score=67.06  Aligned_cols=105  Identities=10%  Similarity=0.080  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ...+...+..+...|++++|+..+++++...      .+   ..++..++.++...|++++|+.++++++...... ++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~   74 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RAD   74 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccc
Confidence            4556677778889999999999999988753      12   3567789999999999999999999999876543 456


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ++..+..++.+|.++...|++++|+.++++++.+.
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  109 (258)
T 3uq3_A           75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH  109 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            77778999999999999999999999999999853

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.09  E-value=5.3e-05  Score=66.39  Aligned_cols=115  Identities=14%  Similarity=0.086  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++...     |.  
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~--  205 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-----PN--  205 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----HH--
Confidence            34456667778899999999999987652     333   4567889999999999999999999998742     33  


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                       ....++.+|.++..+|++++|+.++++|+++.....  +.|...++...|..
T Consensus       206 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          206 -FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence             346688999999999999999999999999864432  33444455555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.08  E-value=1.6e-05  Score=74.84  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc--------------HHHHHHHHHHHHHhhhhHHHH
Q 017649          216 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--------------LMQTREKLIKILMELEDWKEA  281 (368)
Q Consensus       216 ~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~--------------l~~~~~~La~~~~~~g~~~~A  281 (368)
                      .......+...+..+...|++++|+..|++++...     |.+..              ...++.+++.+|..+|+|++|
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34455667788888999999999999999988753     11110              113778999999999999999


Q ss_pred             HHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          282 LAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       282 l~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      +.++.+++..        +|.-...++++|.++..+|++++|+..|++|+.+     .|+++.....+..+
T Consensus       250 ~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-----~p~~~~a~~~L~~l  307 (338)
T 2if4_A          250 IGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-----APDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH
Confidence            9999999874        2333567899999999999999999999999865     35555544443333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.08  E-value=3e-05  Score=67.80  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=81.4

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++...     |.+  
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~--   72 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKE-----NPQD---PEALYWLARTQLKLGLVNPALENGKTLVART-----PRY--   72 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc--
Confidence            445566778899999999999988753     3443   5567889999999999999999999998742     333  


Q ss_pred             HHHHHhhhhhHhhhc-----------CChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          303 LGLQYYTCGKLEWFL-----------GDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       303 ~~~~l~~La~l~~~~-----------g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                       ...++.+|.++..+           |++++|+..+++|+++     .|+++..
T Consensus        73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~  120 (217)
T 2pl2_A           73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL  120 (217)
T ss_dssp             -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence             45678999999999           9999999999999986     4555543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.08  E-value=9e-05  Score=64.94  Aligned_cols=123  Identities=9%  Similarity=-0.010  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh------------------hhhHHHHHH
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME------------------LEDWKEALA  283 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~------------------~g~~~~Al~  283 (368)
                      .....+..+...|++++|+..++++++.     .|.++....++..++.++..                  +|++++|+.
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            4556677788899999999999998764     56777766677777777764                  579999999


Q ss_pred             HHHhhhhhHHhhcCCCChHHH--------------HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          284 YCQLTIPVYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       284 ~~~~~l~~~e~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      .+++++..+     |+++...              ...+.+|.++...|++.+|+..++++++..     |++|...+..
T Consensus       118 ~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~  187 (225)
T 2yhc_A          118 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDAL  187 (225)
T ss_dssp             HHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHH
T ss_pred             HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHH
Confidence            999888643     3444322              222577889999999999999999999864     5566666666


Q ss_pred             HHHHHHHHHH
Q 017649          350 LKLEEAQAEA  359 (368)
Q Consensus       350 ~~L~~~~~el  359 (368)
                      ..+..+..++
T Consensus       188 ~~l~~~~~~~  197 (225)
T 2yhc_A          188 PLMENAYRQM  197 (225)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            6666665443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.06  E-value=2.9e-05  Score=66.70  Aligned_cols=105  Identities=11%  Similarity=-0.024  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc-----
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-----  296 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~-----  296 (368)
                      .....+..+...|++++|+..+++++.+.     |.   ...++.+++.++..+|++++|++++++++......-     
T Consensus        39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  110 (213)
T 1hh8_A           39 ICFNIGCMYTILKNMTEAEKAFTRSINRD-----KH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK  110 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence            34556667778999999999999987652     33   346778999999999999999999999887532110     


Q ss_pred             --C-CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          297 --P-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       297 --g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                        | ..+|.....++++|.++..+|++++|+..+++|+.+.
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence              0 1456667889999999999999999999999999754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.03  E-value=0.00013  Score=62.38  Aligned_cols=94  Identities=11%  Similarity=0.042  Sum_probs=58.2

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .+..+...|++++|+..+++++..     .|.+   ..+...++.++... |++++|+.++++++.      .+.+|...
T Consensus        48 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~  113 (225)
T 2vq2_A           48 RAEIYQYLKVNDKAQESFRQALSI-----KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPY  113 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchH
Confidence            344455666666666666666543     1222   33455666777777 777777777666665      23445555


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..++.+|.++...|++++|+.++.++++.
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66667777777777777777777777653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.03  E-value=1.6e-05  Score=74.08  Aligned_cols=112  Identities=15%  Similarity=0.129  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC---C
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---Q  298 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g---~  298 (368)
                      .....+..+...|++++|+..+++++.+     .|.   ...++..++.+|...|++++|+.++++++.......+   .
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  324 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALEL-----QPG---YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  324 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence            3455666777889999999999998765     233   3466788999999999999999999999988765533   3


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  341 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~  341 (368)
                      .++.....+..+|.++..+|++++|...+.++++++...+|.+
T Consensus       325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  367 (368)
T 1fch_A          325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLP  367 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTCC
T ss_pred             ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCCC
Confidence            4566678899999999999999999999999999999888764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.03  E-value=2.8e-05  Score=62.12  Aligned_cols=86  Identities=12%  Similarity=0.094  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649          260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  339 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G  339 (368)
                      ..+.+..+|+.++...|+|++|++++.+++++        +|..+..++++|.++..+|++++|+..+++|+++-.. ..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cc
Confidence            34566778999999999999999999999975        3444567899999999999999999999999987543 33


Q ss_pred             CCCchHHHHHHHHHH
Q 017649          340 TNSPFMKELILKLEE  354 (368)
Q Consensus       340 ~~hp~~~~l~~~L~~  354 (368)
                      +.++....+...+..
T Consensus        77 ~~~~~~a~~~~~lg~   91 (127)
T 4gcn_A           77 ADYKLIAKAMSRAGN   91 (127)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            444444444444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.02  E-value=4.2e-05  Score=66.68  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+...+..+...|++++|+..+++++.+..    +.+.   .+...++.++..+|++++|+.++++++..        +|
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p   73 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------NY   73 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------Cc
Confidence            456677778899999999999999887531    1232   45666999999999999999999999852        34


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .....++.+|.++..+|++++|+..+++|+++.
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            455678999999999999999999999999753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.01  E-value=8.2e-05  Score=65.42  Aligned_cols=62  Identities=11%  Similarity=0.084  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ...++.++...|++++|++++++++.      .+.+|.....++.+|.++...|++++|+.+++++++
T Consensus       108 ~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          108 LNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33444444444444444444444443      123333344444455555555555555555555544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.00  E-value=5.5e-05  Score=58.62  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhc
Q 017649          238 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  317 (368)
Q Consensus       238 eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~  317 (368)
                      +|+..+++++.     ..|.+   ..++..++.+|...|++++|+.++++++...        |.....++.+|.++..+
T Consensus         3 ~a~~~~~~al~-----~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLA-----QGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHT-----TTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----hCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHc
Confidence            35555665543     23443   4567889999999999999999999998742        23345678999999999


Q ss_pred             CChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          318 GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       318 g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      |++++|+..+++|+++.... | +.....++...+..+...
T Consensus        67 g~~~~A~~~~~~al~~~~~~-~-~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSR-G-DQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccc-c-cHHHHHHHHHHHHHhccc
Confidence            99999999999999875432 1 122334455555555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.00  E-value=1.7e-05  Score=74.16  Aligned_cols=113  Identities=12%  Similarity=0.125  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++.+     +|.+   ..++.+++.+|..+|++++|+.++++++.......++.++
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  320 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEI-----QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV  320 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence            3445666777889999999999998775     3333   5678899999999999999999999999999887776655


Q ss_pred             HH----HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          302 LL----GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       302 ~~----~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                      ..    +..+..|+.++..+|+.+.|.....+++++++..+|.++
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~  365 (365)
T 4eqf_A          321 PHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP  365 (365)
T ss_dssp             ------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTTCC-
T ss_pred             chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcCCCC
Confidence            44    677889999999999999999999999999999999764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.99  E-value=0.00014  Score=63.96  Aligned_cols=93  Identities=9%  Similarity=-0.046  Sum_probs=59.8

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|+..+++++.      .+.++....+...++.++...|++++|+.++++++..     .+.+   ..
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~  176 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQ---PS  176 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----Cccc---HH
Confidence            34445566677777666665543      1234444556677777777777777777777776653     1223   34


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .+..+|.++..+|++++|+.+++++++
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            556777777777777777777777765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.99  E-value=6.1e-05  Score=66.88  Aligned_cols=97  Identities=10%  Similarity=0.067  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++..     .|.   ...++..++.++...|++++|++++++++...     |.+
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~  110 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAI-----RPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----PTY  110 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----ccc
Confidence            34455677778899999999999998875     333   34567889999999999999999999998752     223


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                         ...++.+|.++...|++++|+..+++++++
T Consensus       111 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A          111 ---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence               467889999999999999999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.94  E-value=0.00012  Score=56.81  Aligned_cols=93  Identities=23%  Similarity=0.309  Sum_probs=69.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..+++++..     +|.+   ..+...++.++...|++++|+.++++++..     .+.+   .
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~   69 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---A   69 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---H
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc---h
Confidence            3445566778899999888887654     2322   345667888888899999999988887753     2233   3


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..++.+|.++...|++++|+.++.+++.+
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45678888999999999999999998875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.94  E-value=0.0001  Score=67.05  Aligned_cols=102  Identities=10%  Similarity=0.036  Sum_probs=82.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-hH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PL  302 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h-p~  302 (368)
                      ...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++.......+... |.
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  234 (330)
T 3hym_B          163 LYIGLEYGLTNNSKLAERFFSQALSI-----APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK  234 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence            33556677889999999999888654     2333   456778999999999999999999999998876655433 45


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ....+..+|.++...|++++|+.++++|+++
T Consensus       235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            5678889999999999999999999999986

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.94  E-value=0.00021  Score=61.09  Aligned_cols=94  Identities=9%  Similarity=-0.029  Sum_probs=72.2

Q ss_pred             HHHHhhhc-CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          226 KTLALTSC-GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       226 ~a~~~~~~-g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .+..+... |++++|+..+++++.      .+.++....+...++.++...|++++|+.++++++..     .+.+   .
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~  147 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQF---P  147 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---H
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---c
Confidence            45556677 889998888887764      2445556677888899999999999999988888763     2233   3


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+..+|.++...|++++|+.++++++.+
T Consensus       148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          148 PAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56778898999999999999999998874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.93  E-value=6.7e-05  Score=64.35  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ...+..+..+...|++++|+..++++       +.+ +   ..+..+++.++...|++++|+.++++++...        
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAV-------QDP-H---SRICFNIGCMYTILKNMTEAEKAFTRSINRD--------   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS-------SSC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH-------cCC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Confidence            34566777788899999999988765       222 2   4578899999999999999999999998752        


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      |.....++++|.++..+|++++|+..+++|+++.
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            3334678999999999999999999999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.93  E-value=6.1e-05  Score=66.96  Aligned_cols=98  Identities=15%  Similarity=0.050  Sum_probs=68.9

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +...|..+...|++++|+..+++++..     .|.+..   +...++.++...|++++|++++++++.     .|.+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~   72 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPY---IYNRRAVCYYELAKYDLAQKDIETYFS-----KVNATKA   72 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCST---THHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCTTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh-----ccCchhH
Confidence            445566677788888888888877653     333332   355677788888888888888887776     2333333


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .+..+..+|.++...|++++|+.++++|+++
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~  103 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR  103 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            4666778888888888888888888888874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.92  E-value=0.00024  Score=58.48  Aligned_cols=94  Identities=13%  Similarity=0.041  Sum_probs=71.2

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|++++++++..     .+.+   
T Consensus        46 ~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---  109 (186)
T 3as5_A           46 LHLGIAYVKTGAVDRGTELLERSLAD-----APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPIN---  109 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHh---
Confidence            34455566788999999988887764     2332   355677888899999999999998888764     2223   


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..+|.++...|++++|+.++++++..
T Consensus       110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A          110 FNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            356788899999999999999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.91  E-value=0.00016  Score=66.39  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ++.....+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .|.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~   69 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMD   69 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence            345666777888999999999999998764     3333   456788999999999999999999999875     233


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +   ...++.+|.++...|++++|+..+++++.+
T Consensus        70 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  100 (359)
T 3ieg_A           70 F---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS  100 (359)
T ss_dssp             C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred             c---chHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            3   366889999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.91  E-value=0.00025  Score=67.89  Aligned_cols=111  Identities=17%  Similarity=0.161  Sum_probs=87.1

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~-l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ...+..+...|++++|+..+++++..     .|.++. ...++..++.++...|++++|+.++++++..        +|.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~  327 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPD  327 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Ccc
Confidence            44577778889999999999998764     344443 3567888999999999999999999998865        233


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ....++.+|.++...|++++|+..+++|+++     .|+++.....+..+
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~  372 (450)
T 2y4t_A          328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGLEKA  372 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHHHHH
Confidence            4467889999999999999999999999973     56666555444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.91  E-value=0.00015  Score=56.11  Aligned_cols=94  Identities=22%  Similarity=0.299  Sum_probs=73.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .+.+   
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---  102 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---  102 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---
Confidence            33455566788999999999887754     2333   345678999999999999999999988864     2233   


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..+|.++...|++++|+.++.+++.+
T Consensus       103 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A          103 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            345678999999999999999999999875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.86  E-value=0.00015  Score=71.48  Aligned_cols=105  Identities=12%  Similarity=0.048  Sum_probs=82.9

Q ss_pred             HHHHHHHhhhc---------CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh--------hhHHHHHHHH
Q 017649          223 LSKKTLALTSC---------GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYC  285 (368)
Q Consensus       223 l~~~a~~~~~~---------g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~--------g~~~~Al~~~  285 (368)
                      ....+..+...         |++++|+..+++++.+     .|.+   ..++..++.+|..+        |++++|++++
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            34455556666         8999999999998875     3433   45678899999999        9999999999


Q ss_pred             HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      ++++...     |.++.....++++|.++..+|++++|+..+++|+++     .|+++..
T Consensus       245 ~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a  294 (474)
T 4abn_A          245 AQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEP  294 (474)
T ss_dssp             HHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            9999762     223366788999999999999999999999999985     3555533

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.86  E-value=9.2e-05  Score=67.40  Aligned_cols=113  Identities=14%  Similarity=0.185  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h-~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .....+..+...|++++|+..+++++......-.+.. +....+...++.++...|++++|+.++++++...     +. 
T Consensus       195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~-  268 (330)
T 3hym_B          195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQ-  268 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT-
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----cc-
Confidence            3445666777889999999999999887644333222 3334577889999999999999999999998752     23 


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                        ....+..+|.++..+|++++|+.++++|+++     .|+++....
T Consensus       269 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~  308 (330)
T 3hym_B          269 --NASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVT  308 (330)
T ss_dssp             --CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHH
T ss_pred             --chHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHH
Confidence              3456789999999999999999999999864     456654433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.86  E-value=0.00026  Score=61.27  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH---
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL---  302 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~---  302 (368)
                      .+..+...|++++|+..+++++.+     .|.+   ..++..++.++...|++++|+.++++++...     |.++.   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~  126 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK-----APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLE-----ADNLAANI  126 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHH
Confidence            667778899999999999998875     3444   4567889999999999999999999988642     23332   


Q ss_pred             -HHH----------------------------HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHH
Q 017649          303 -LGL----------------------------QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  353 (368)
Q Consensus       303 -~~~----------------------------~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~  353 (368)
                       +|.                            .++.+|..+..+|++++|+..|++|+++.     |++ .....+..+.
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~-~~~~~l~~i~  200 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF-----PST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS-----CCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCH-HHHHHHHHHH
Confidence             122                            22334555556778889999999998753     332 3444555555


Q ss_pred             HHHHHH
Q 017649          354 EAQAEA  359 (368)
Q Consensus       354 ~~~~el  359 (368)
                      +++.++
T Consensus       201 ~~~~~~  206 (208)
T 3urz_A          201 RIEKEV  206 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.85  E-value=0.00018  Score=65.99  Aligned_cols=103  Identities=15%  Similarity=0.140  Sum_probs=82.3

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      ..|++++|...+++++..     .|.+   ..++.+++.++..+|+|++|..++++++..     .|++|..   ++++|
T Consensus       178 ~~~~~~eA~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~---l~~l~  241 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADK-----CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET---LINLV  241 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHH-----SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHH
T ss_pred             CchHHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Confidence            457899999999888764     3443   456788999999999999999999999864     3566654   78999


Q ss_pred             hHhhhcCChHH-HHHHHHHHHHhhccccCCCCchHHHHHHHHHHH
Q 017649          312 KLEWFLGDTEN-AIKSMTEAVEILRITHGTNSPFMKELILKLEEA  355 (368)
Q Consensus       312 ~l~~~~g~~~e-A~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~  355 (368)
                      .++..+|+..+ +..+++++++     ..|+||.+.++..+-..-
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~~d~~~~~~~f  281 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFIKEYRAKENDF  281 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHH
Confidence            99999999976 5688888875     479999999987765444

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=97.85  E-value=1.3e-05  Score=66.70  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=37.8

Q ss_pred             ccccccCCCcc---CcEEEEeCCEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           95 VISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        95 ~~s~~nHsC~P---N~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      .+.++||+|.|   |+...-.++++.++|+|+|++||||++.|++.++.
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y~~  145 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQ  145 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC----
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHHHH
Confidence            34688999965   99887788999999999999999999999988753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.85  E-value=9.5e-05  Score=58.94  Aligned_cols=68  Identities=12%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +|.......+++..|...|+|++|++++.++++.        .|.-...++++|.++..+|++++|+..+++|+++
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence            6778888999999999999999999999999864        2333467899999999999999999999999985

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.83  E-value=0.00016  Score=68.23  Aligned_cols=91  Identities=20%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+++++++++.        +|....
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~  340 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRL-----CPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA  340 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHH
Confidence            333444555666666665555443     2222   234455666666666666666666665542        233345


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      .++.+|.++...|++++|+..+++|++
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          341 AHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566777777777777777777777765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.83  E-value=0.00036  Score=63.29  Aligned_cols=99  Identities=14%  Similarity=0.012  Sum_probs=79.4

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++...     +.+  
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~--  239 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVEL-----RPDD---AQLWNKLGATLANGNRPQEALDAYNRALDIN-----PGY--  239 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC--
Confidence            444566677889999999999988764     2333   4567789999999999999999999988742     233  


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                       ...++.+|.++..+|++++|+.++++|+.+....
T Consensus       240 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          240 -VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence             4567899999999999999999999999876553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.83  E-value=0.00015  Score=72.76  Aligned_cols=96  Identities=17%  Similarity=-0.011  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|++.+++++++     .|.+   ..++.+++.+|..+|++++|+++++++++..     +.+ 
T Consensus        25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-   90 (568)
T 2vsy_A           25 AWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----PEH-   90 (568)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-
Confidence            3445566677889999999999988764     3433   5567889999999999999999999998742     333 


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                        ...++++|.++..+|++++|+..+++|+++
T Consensus        91 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           91 --PGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              457889999999999999999999999986

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.81  E-value=0.00019  Score=59.08  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|.+.+++++..     .|.+   ..+...++.++...|++++|++++++++...     +.+  
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--  143 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-----PNE--  143 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----ccc--
Confidence            344566677889999999999988765     2333   3567789999999999999999999988642     233  


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                       ...+..+|.++...|++++|..++++++++.
T Consensus       144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          144 -GKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence             4667899999999999999999999998764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.81  E-value=0.00015  Score=63.03  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=42.4

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHH
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  307 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l  307 (368)
                      ..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++..     .+.+   ...+
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~  196 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELN-----END---TEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPGH---ADAF  196 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTTC---HHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHH
Confidence            33444455555555555544321     111   223444555555555555555555554432     1122   2234


Q ss_pred             hhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          308 YTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       308 ~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ..+|.++..+|++++|+.+++++++
T Consensus       197 ~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          197 YNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHc
Confidence            5555555555555555555555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.80  E-value=5.6e-05  Score=57.51  Aligned_cols=68  Identities=25%  Similarity=0.206  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      -..++..++.+|...|+|++|+.++++++...     |.++   ..++.+|.++..+|++++|+..+++|+++...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-----PDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            34567889999999999999999999998742     3333   47889999999999999999999999987543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.78  E-value=0.00022  Score=65.24  Aligned_cols=104  Identities=13%  Similarity=0.032  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh---------
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------  291 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~---------  291 (368)
                      ......|..+...|++++|+..+++++..     .|.+   ..++..|+.++...|++++|+..+++++..         
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence            45667788888999999999999998864     3444   456888999999999999999998887542         


Q ss_pred             ------------------HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          292 ------------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       292 ------------------~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                                        +++..- .+|.-...++++|.++...|++++|+..|.+++..
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence                              111110 13444456789999999999999999999999985

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.77  E-value=0.00043  Score=60.02  Aligned_cols=94  Identities=15%  Similarity=0.027  Sum_probs=67.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ...+..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++...     +.+   
T Consensus        95 ~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---  158 (243)
T 2q7f_A           95 YGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----END---  158 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----Ccc---
Confidence            344555667788888888888776542     222   3456678888888888888888888877542     222   


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...++.+|.++...|++++|+..+++++..
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345678888888888888888888888775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.77  E-value=0.0001  Score=67.05  Aligned_cols=113  Identities=12%  Similarity=0.031  Sum_probs=88.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h-  300 (368)
                      .....+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|++++++++.......++.+ 
T Consensus       208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  279 (327)
T 3cv0_A          208 LWNKLGATLANGNRPQEALDAYNRALDI-----NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE  279 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence            3445666777889999999999988764     2333   446778999999999999999999999886644322222 


Q ss_pred             ---hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCC
Q 017649          301 ---PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  342 (368)
Q Consensus       301 ---p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~h  342 (368)
                         ......+..+|.++..+|++++|...++++++++...+|.++
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  324 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQS  324 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSSC
T ss_pred             chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHHH
Confidence               225678889999999999999999999999999988888665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.76  E-value=0.00065  Score=56.76  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=60.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH-----------
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ-----------  293 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e-----------  293 (368)
                      +.+..+...|++++|++.+++++++     .|++   ..++..++.+|..+|++++|+..+.+++....           
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKA-----DPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            3444555666777777776666553     2333   33455666666666666666665555432110           


Q ss_pred             ----------------hhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          294 ----------------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       294 ----------------~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                                      +.. ..+|.-...+..+|.++..+|++++|+..+++++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~  136 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAI-ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI  136 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence                            000 012222345677899999999999999999999876

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.75  E-value=0.00013  Score=60.94  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=68.4

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhH----------HHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW----------KEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~----------~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .|++|++.+++++++     .|   .-..++.+++.++..++++          ++|+..+++++.+-        |...
T Consensus        17 ~feeA~~~~~~Ai~l-----~P---~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--------P~~~   80 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS-----NP---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------PKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred             HHHHHHHHHHHHHHH-----CC---CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------cCcH
Confidence            356777777777654     33   3455677888888888776          47777777766532        3344


Q ss_pred             HHHhhhhhHhhhcC-----------ChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLG-----------DTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       305 ~~l~~La~l~~~~g-----------~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ..++++|.+|..+|           ++++|+.+|++|+++     -|+++.+...+...
T Consensus        81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~~  134 (158)
T 1zu2_A           81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            56788888888764           899999999999986     56777776665443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.74  E-value=0.00011  Score=61.69  Aligned_cols=103  Identities=14%  Similarity=0.075  Sum_probs=76.0

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH---------
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---------  293 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e---------  293 (368)
                      .+..+..+...|++++|+..+++++..        +|.-..++..++.++...|++++|+.++++++....         
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~   80 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA   80 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence            445566777889999999998877653        233356678899999999999999998887754310         


Q ss_pred             -----hhcCC------------CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          294 -----RVYPQ------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       294 -----~~~g~------------~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                           ...+.            .+|.-...++.+|.++...|++++|+..+++++++
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV  137 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence                 00111            13444566788999999999999999999999864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.73  E-value=0.0002  Score=70.55  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=79.6

Q ss_pred             HHHHHHHHhhhcCCh-HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          222 ILSKKTLALTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~-~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .....+..+...|++ ++|+..+++++++     .|.   ...++..++.+|...|++++|++++++++...     |. 
T Consensus       104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-  169 (474)
T 4abn_A          104 ALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----KN-  169 (474)
T ss_dssp             HHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----CC-
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-
Confidence            445566777888999 9999999998875     233   35678899999999999999999999998752     22 


Q ss_pred             hHHHHHHhhhhhHhhhc---------CChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFL---------GDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~---------g~~~eA~~~l~kAl~i  333 (368)
                         ...+.++|.++..+         |++++|+..+++|+++
T Consensus       170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  208 (474)
T 4abn_A          170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM  208 (474)
T ss_dssp             ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence               37789999999999         9999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.72  E-value=0.0003  Score=51.21  Aligned_cols=65  Identities=22%  Similarity=0.327  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+...++.++...|++++|+.++++++..     .+.+   ...++.+|.++...|++++|+.++++|+++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3456778999999999999999999999864     2333   456789999999999999999999999986

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.72  E-value=0.0001  Score=65.46  Aligned_cols=96  Identities=14%  Similarity=-0.015  Sum_probs=65.8

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..+++++..     +++......+...++.++...|++++|+++++++++..        |...
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~  108 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFSK-----VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRL  108 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT-----SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhc-----cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccH
Confidence            3444566778888888887777541     22223345667778888888888888888888877631        2223


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+..+|.++...|++++|+..+++|+++
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            45677888888888888888888777765

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=97.72  E-value=2.9e-05  Score=65.76  Aligned_cols=44  Identities=20%  Similarity=0.295  Sum_probs=37.3

Q ss_pred             cccccCCCc---cCcEEEEeCCEEEEEEccCCCCCCeeEEeccCCCC
Q 017649           96 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAG  139 (368)
Q Consensus        96 ~s~~nHsC~---PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~~  139 (368)
                      +.++||+|.   +|+...-.++++.++|+|+|++|+||++.|++.+.
T Consensus       102 mR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y~  148 (170)
T 3ep0_A          102 MTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSHN  148 (170)
T ss_dssp             GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred             eeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHHH
Confidence            367899997   89887777889999999999999999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.72  E-value=2.2e-05  Score=59.79  Aligned_cols=96  Identities=14%  Similarity=0.154  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC-
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-  299 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~-  299 (368)
                      ......+..+...|++++|+..+++++.+     .|.+   ..++.+++.++..+|++++|++++++++...    |.+ 
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~   72 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT----STAE   72 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----SSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcc
Confidence            34556677788999999999999998875     3433   4567899999999999999999999998643    322 


Q ss_pred             -ChHHHHHHhhhhhHhhhcCChHHHHHHHH
Q 017649          300 -HPLLGLQYYTCGKLEWFLGDTENAIKSMT  328 (368)
Q Consensus       300 -hp~~~~~l~~La~l~~~~g~~~eA~~~l~  328 (368)
                       ....+..++.+|.++..+|++++|+..++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence             12236678888888888887776655433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.00042  Score=66.12  Aligned_cols=128  Identities=8%  Similarity=0.065  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      +.+...+..+...|++++|.+.+.+++.....+  +.......++..++.++...|++++|+.+++.++......  ...
T Consensus        56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~  131 (434)
T 4b4t_Q           56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--Ccc
Confidence            345556666778888888888888877765432  1122233445556666666677777777777777766654  234


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                      +..+..+.+||.++...|++.+|.+++.+++.+....  .+++...++...+..
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~  183 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESK  183 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHH
Confidence            4556667777777777777777777777777665544  234444444444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.70  E-value=0.00012  Score=64.85  Aligned_cols=91  Identities=9%  Similarity=-0.053  Sum_probs=73.9

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      ...|++++|+..+++++..    .+..++....+...++.++...|++++|+.++++++..     .|.   ....++.+
T Consensus        16 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~---~~~~~~~l   83 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPD---MPEVFNYL   83 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC---CHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCC---cHHHHHHH
Confidence            3556788999988887653    12234566778899999999999999999999999874     233   34568899


Q ss_pred             hhHhhhcCChHHHHHHHHHHHHh
Q 017649          311 GKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      |.++...|++++|+.++++|+.+
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhc
Confidence            99999999999999999999986

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00028  Score=68.49  Aligned_cols=99  Identities=10%  Similarity=-0.012  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~  298 (368)
                      .+..+...+..+...|++++|+..+++++...     |+    ..++..++.++...|++++|+..+++++..     .|
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p   70 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----KP   70 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CS
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----Ch
Confidence            44567778888899999999999999988753     32    456888999999999999999999999863     23


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .   ....++.+|.++..+|++++|+..+++++.+-
T Consensus        71 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  103 (514)
T 2gw1_A           71 D---YSKVLLRRASANEGLGKFADAMFDLSVLSLNG  103 (514)
T ss_dssp             C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             H---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3   34668889999999999999999999998754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.0012  Score=62.82  Aligned_cols=118  Identities=14%  Similarity=-0.028  Sum_probs=97.5

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++.+|...++.++......  .+++..+.+...++.+|..+|+|++|..++++++.+.... +..+..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~  214 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI-YCPTQT  214 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC-CCchHH
Confidence            3445666778899999999999887765432  3466778889999999999999999999999999887665 344566


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  343 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp  343 (368)
                      .+..+..+|.++...|++.+|..++.+|++........++.
T Consensus       215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          215 VAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            78889999999999999999999999999998877666654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.68  E-value=0.00029  Score=66.41  Aligned_cols=60  Identities=25%  Similarity=0.236  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ...++.++...|++++|++++++++..        +|.....+.++|.++...|++++|+..+++|+.
T Consensus       138 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  197 (388)
T 1w3b_A          138 RSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555555555555555544432        222233444555555555555555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.64  E-value=3.6e-05  Score=76.14  Aligned_cols=108  Identities=13%  Similarity=-0.006  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|++.+++++++     +|.   ...++.+++.+|..+|++++|+++++++++.     .|.+
T Consensus        41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~  107 (477)
T 1wao_1           41 IYYGNRSLAYLRTECYGYALGDATRAIEL-----DKK---YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHD  107 (477)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC
Confidence            34556777788999999999999998865     333   3567889999999999999999999999875     2333


Q ss_pred             hHHHHHHhhhhhH--hhhcCChHHHHHHHH-----------HHHHhhccccCCCCch
Q 017649          301 PLLGLQYYTCGKL--EWFLGDTENAIKSMT-----------EAVEILRITHGTNSPF  344 (368)
Q Consensus       301 p~~~~~l~~La~l--~~~~g~~~eA~~~l~-----------kAl~i~~~~~G~~hp~  344 (368)
                      +   ..+..++.+  +..+|++++|+..++           +|+.+-....|+.++.
T Consensus       108 ~---~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  161 (477)
T 1wao_1          108 K---DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED  161 (477)
T ss_dssp             T---THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccc
Confidence            3   345566666  778899999999999           8888777778888875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.62  E-value=0.00041  Score=66.40  Aligned_cols=98  Identities=13%  Similarity=0.102  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .......+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .|.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~   92 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQL-----KMD   92 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCC
Confidence            344556677788899999999999988764     3333   566788999999999999999999998874     233


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                         ....++.+|.++..+|++++|+..+++++++
T Consensus        93 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  123 (450)
T 2y4t_A           93 ---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  123 (450)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence               3567889999999999999999999999863

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.62  E-value=0.00063  Score=67.71  Aligned_cols=111  Identities=14%  Similarity=0.059  Sum_probs=85.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~-l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      ....+..+...|++++|++.+++++......  +.++. ...++..++.+|...|++++|+++++++++..     |.++
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~  550 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TNDA  550 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCh
Confidence            3445666778899999999999888764321  22333 36778899999999999999999999988752     3443


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL  348 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l  348 (368)
                         ..+..+|.++...|++++|+.++++++++     .|+++.....
T Consensus       551 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~  589 (597)
T 2xpi_A          551 ---NVHTAIALVYLHKKIPGLAITHLHESLAI-----SPNEIMASDL  589 (597)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHHH
Confidence               66789999999999999999999999985     5666654443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.60  E-value=0.00033  Score=67.14  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=27.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIP  290 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~-~~~Al~~~~~~l~  290 (368)
                      +...|++++|+..+++++.+     .|.   -..++.+++.++..+|+ +++|+..+++++.
T Consensus       107 ~~~~g~~~~Al~~~~~al~l-----~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIEL-----NAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHh-----Ccc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            34455566666666555543     122   23344455555555554 5555555555554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00057  Score=51.66  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  341 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~  341 (368)
                      ..+...++.++...|+|++|++++++++..     .|.+   ...++++|.++..+|++++|+..+++|+++.     |+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            355678999999999999999999999875     2333   4568899999999999999999999999753     33


Q ss_pred             C---chHHHHHHHHHHHHHHHh
Q 017649          342 S---PFMKELILKLEEAQAEAS  360 (368)
Q Consensus       342 h---p~~~~l~~~L~~~~~el~  360 (368)
                      +   .........+..+...+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            3   122444445555555444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.58  E-value=0.00033  Score=54.74  Aligned_cols=83  Identities=11%  Similarity=-0.055  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      ...++..+...|+|++|+.++++++..     .|.++.....++.+|.++..+|++++|+..+++++..     .|+++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence            456888899999999999999988764     3567777788899999999999999999999999874     467765


Q ss_pred             HHHHHHHHHHHHH
Q 017649          345 MKELILKLEEAQA  357 (368)
Q Consensus       345 ~~~l~~~L~~~~~  357 (368)
                      ..+....+..+..
T Consensus        75 ~~~~~~~la~~~~   87 (129)
T 2xev_A           75 AAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            5555555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.56  E-value=0.00091  Score=54.25  Aligned_cols=100  Identities=12%  Similarity=0.000  Sum_probs=76.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++..     .|.+   ..+...++.++..+|++++|+.++++++..     .|.++
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~  115 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIEL-----DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDK  115 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH
Confidence            3445666777889999999999998775     2333   456788999999999999999999998864     23444


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      . +.....++..+...|++++|+..+.++..++.
T Consensus       116 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A          116 D-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence            3 23445566667788999999999999887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.55  E-value=0.0011  Score=65.95  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH-HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  341 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~  341 (368)
                      .++..++.+|...|++++|+++++++++.....  +.+|. ....+..+|.++...|++++|+..+++++++     +|+
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~  548 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-----STN  548 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence            456778888889999999999999888766532  33454 3678899999999999999999999999986     466


Q ss_pred             CchHHH
Q 017649          342 SPFMKE  347 (368)
Q Consensus       342 hp~~~~  347 (368)
                      ++.+..
T Consensus       549 ~~~~~~  554 (597)
T 2xpi_A          549 DANVHT  554 (597)
T ss_dssp             CHHHHH
T ss_pred             ChHHHH
Confidence            654433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.49  E-value=0.00025  Score=68.00  Aligned_cols=95  Identities=11%  Similarity=-0.024  Sum_probs=69.2

Q ss_pred             HHHHHHHhhhcCC-hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          223 LSKKTLALTSCGN-HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       223 l~~~a~~~~~~g~-~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      ....+..+...|+ +++|+..+++++.+     .|   .-..++.+++.++..+|++++|+..+++++..-        |
T Consensus       134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l-----~P---~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------P  197 (382)
T 2h6f_A          134 WHFRRVLLKSLQKDLHEEMNYITAIIEE-----QP---KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--------A  197 (382)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------T
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHH-----CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------c
Confidence            3455666677786 99999988888764     23   334567788888888888888888888887632        2


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .-...++++|.++..+|++++|+..+++|+++
T Consensus       198 ~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          198 KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            23355677888888888888888888887764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.47  E-value=0.00032  Score=58.01  Aligned_cols=75  Identities=9%  Similarity=-0.017  Sum_probs=62.5

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      +|.-..++..++.++...|++++|+.++++++..     .|.+|   ..++++|.++..+|++++|+..|++|+.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~---~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV---DYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            5556677889999999999999999999999874     34444   56889999999999999999999999985    


Q ss_pred             cCCCCchH
Q 017649          338 HGTNSPFM  345 (368)
Q Consensus       338 ~G~~hp~~  345 (368)
                       .|++|..
T Consensus       100 -~P~~~~~  106 (151)
T 3gyz_A          100 -GKNDYTP  106 (151)
T ss_dssp             -SSSCCHH
T ss_pred             -CCCCcHH
Confidence             3566544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.46  E-value=0.0008  Score=67.38  Aligned_cols=98  Identities=10%  Similarity=-0.113  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|++.+++++++     .|.+   ..++.+++.+|..+|++++|+++++++++..     +.+ 
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-  124 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDA-----APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----PEE-  124 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-
Confidence            3455666778889999999999998875     3333   5567899999999999999999999988752     233 


Q ss_pred             HHHHHHhhhhhHhhhc---CChHHHHHHHHHHHHhhc
Q 017649          302 LLGLQYYTCGKLEWFL---GDTENAIKSMTEAVEILR  335 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~---g~~~eA~~~l~kAl~i~~  335 (368)
                        ...+.++|.++..+   |++++|+..+++|++.-.
T Consensus       125 --~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          125 --PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             --HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence              45678999999999   999999999999987644

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0021  Score=62.30  Aligned_cols=116  Identities=14%  Similarity=0.075  Sum_probs=86.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh---hhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~---~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ....+..+...|++++|+..+++++......  +.......+...++.++..   .|++++|+.++++++..     .+.
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~  447 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-----DPR  447 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-----Ccc
Confidence            3455667778899999999999887754221  1111223467789999999   99999999999998874     233


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  353 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~  353 (368)
                      +   ...+..+|.++...|++++|+.++++|+++     .|+++.....+..++
T Consensus       448 ~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          448 S---EQAKIGLAQMKLQQEDIDEAITLFEESADL-----ARTMEEKLQAITFAE  493 (514)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSHHHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----ccccHHHHHHHHHHH
Confidence            3   456789999999999999999999999985     566666655554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.40  E-value=0.00036  Score=57.15  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ++.-..+...++.++...|+|++|+.++++++..     .|.++   ..++.+|.++..+|++++|+..+++|+.+    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS---RFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3445667788999999999999999999998863     23444   45689999999999999999999999985    


Q ss_pred             cCCCCchH
Q 017649          338 HGTNSPFM  345 (368)
Q Consensus       338 ~G~~hp~~  345 (368)
                       .|++|..
T Consensus        85 -~p~~~~~   91 (148)
T 2vgx_A           85 -DIXEPRF   91 (148)
T ss_dssp             -STTCTHH
T ss_pred             -CCCCchH
Confidence             4666644

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.40  E-value=0.00055  Score=56.96  Aligned_cols=88  Identities=9%  Similarity=0.091  Sum_probs=66.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          230 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       230 ~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      +...|++++|+..+++++..     .|.+   ..+...++.+|...|++++|+.++++++...     |.++   ..++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~---~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENA---ELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH-----CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCH---HHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH---HHHHH
Confidence            45667888898888887764     2333   4567889999999999999999999998754     3333   46788


Q ss_pred             hhhH-hhhcCCh--HHHHHHHHHHHHh
Q 017649          310 CGKL-EWFLGDT--ENAIKSMTEAVEI  333 (368)
Q Consensus       310 La~l-~~~~g~~--~eA~~~l~kAl~i  333 (368)
                      +|.+ +...|++  ++|+..+++++.+
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~  110 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL  110 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            9999 7789998  9999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.001  Score=51.91  Aligned_cols=64  Identities=17%  Similarity=0.021  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..++..+...|+|++|+.++.+++...     |.   -...++++|.++..+|++++|+..+++|+++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PE---DARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4556778999999999999999999998742     23   3467899999999999999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.40  E-value=0.00087  Score=55.06  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC----------ChHHHHHHhhhhhHhhhcCChHHHHHHHHH
Q 017649          260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----------HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~----------hp~~~~~l~~La~l~~~~g~~~eA~~~l~k  329 (368)
                      .....+...+..+...|+|++|+.++.+++.......+..          .|.....++++|.++..+|++++|+..+.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456677889999999999999999999999876654322          466678899999999999999999999999


Q ss_pred             HHHh
Q 017649          330 AVEI  333 (368)
Q Consensus       330 Al~i  333 (368)
                      |+.+
T Consensus        89 al~~   92 (162)
T 3rkv_A           89 VLKR   92 (162)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9886

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=97.39  E-value=0.00012  Score=63.24  Aligned_cols=43  Identities=16%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             cccccCCCc---cCcEEEEeCCEEEEEEccCCCCCCeeEEeccCCC
Q 017649           96 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA  138 (368)
Q Consensus        96 ~s~~nHsC~---PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~  138 (368)
                      +.++||+|.   +|+...-.++++.++|+|+|++|+||++.|++.+
T Consensus       132 mRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y  177 (196)
T 3dal_A          132 MRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF  177 (196)
T ss_dssp             GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             EEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence            468899997   7998877889999999999999999999998654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.39  E-value=0.0016  Score=59.64  Aligned_cols=104  Identities=13%  Similarity=0.018  Sum_probs=74.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ....+..+...|++++|++.+++++..     +|.+. .......+...+...|++++|+..++++++.    +| .+  
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~p-~~--  199 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQ-----DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----CS-PT--  199 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----SC-CC--
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----CC-Cc--
Confidence            334455677889999999999988764     34443 1222222334444568999999999998864    33 33  


Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                       ...++.+|.++..+|++++|+..+++|+.+     .|++|.+
T Consensus       200 -~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~  236 (291)
T 3mkr_A          200 -LLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET  236 (291)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence             456889999999999999999999999975     3555543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.38  E-value=0.00079  Score=65.87  Aligned_cols=96  Identities=11%  Similarity=0.153  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~  298 (368)
                      ....+...+..+...|++++|+..+++++..     .|.+   ..++..++.+|..+|++++|++.+++++..     .|
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p   90 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEI-----KP   90 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Confidence            4566778888899999999999999998865     2444   466888999999999999999999999874     23


Q ss_pred             CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          299 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       299 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      .+   ...++.+|.++..+|++++|+..++ ++
T Consensus        91 ~~---~~~~~~la~~~~~~g~~~~A~~~~~-~~  119 (537)
T 3fp2_A           91 DH---SKALLRRASANESLGNFTDAMFDLS-VL  119 (537)
T ss_dssp             TC---HHHHHHHHHHHHHHTCHHHHHHHHH-HH
T ss_pred             ch---HHHHHHHHHHHHHcCCHHHHHHHHH-HH
Confidence            33   4568899999999999999999884 44

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.37  E-value=0.0017  Score=47.02  Aligned_cols=81  Identities=17%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .|.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~   77 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA   77 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCH
Confidence            3445566677889999999999998764     2333   456778999999999999999999999874     23333


Q ss_pred             HHHHHHhhhhhHhhhcC
Q 017649          302 LLGLQYYTCGKLEWFLG  318 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g  318 (368)
                         ..+..+|.++..+|
T Consensus        78 ---~~~~~l~~~~~~~g   91 (91)
T 1na3_A           78 ---EAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---HHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHhcC
Confidence               45677777776543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.36  E-value=0.001  Score=62.33  Aligned_cols=100  Identities=8%  Similarity=-0.059  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ....+.+..+...|++++|+..+++++.+     .|.+   ..++.+++.+|..+|++++|+.++++++..     .|.+
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~  263 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCC
Confidence            45566777788899999999999999875     2333   467789999999999999999999999874     2333


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHH-HHHHHHHHHhhcc
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRI  336 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA-~~~l~kAl~i~~~  336 (368)
                      +   ..+..+|.++..+|++++| ...+++.+..+..
T Consensus       264 ~---~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          264 K---AAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3   4678999999999999998 4567776655443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.35  E-value=0.0014  Score=50.48  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  341 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~  341 (368)
                      ......++.++...|+|++|+.++.+++...     +.+   ...++.+|.++...|++++|+.++++++.+... .+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~   74 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NRED   74 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchh
Confidence            4566789999999999999999999998742     233   456789999999999999999999999987643 2444


Q ss_pred             CchHHHHHHHHHHHH
Q 017649          342 SPFMKELILKLEEAQ  356 (368)
Q Consensus       342 hp~~~~l~~~L~~~~  356 (368)
                      ++....+...+..+.
T Consensus        75 ~~~~~~~~~~la~~~   89 (131)
T 1elr_A           75 YRQIAKAYARIGNSY   89 (131)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444344444554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.33  E-value=0.0014  Score=53.97  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +......+..++.++...|+|++|+.++++++...        |.....++++|.++..+|++++|+..+++|+.+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34456677889999999999999999999998753        233567899999999999999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.30  E-value=0.0024  Score=62.38  Aligned_cols=94  Identities=18%  Similarity=0.089  Sum_probs=63.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ...+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++...     |.++  
T Consensus       280 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~--  344 (537)
T 3fp2_A          280 IFLALTLADKENSQEFFKFFQKAVDL-----NPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----PENV--  344 (537)
T ss_dssp             HHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCS--
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCH--
Confidence            34455566677777777777776653     2222   3456677778888888888888877777632     2232  


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                       ..+..+|.++...|++++|+..+++++++
T Consensus       345 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~  373 (537)
T 3fp2_A          345 -YPYIQLACLLYKQGKFTESEAFFNETKLK  373 (537)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             45667777787888888888888877765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.25  E-value=0.0021  Score=57.26  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=49.5

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  308 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~  308 (368)
                      .+++++|+..++++....          -..+...|+.+|..    .+++++|+.+++++++.       .+   ...++
T Consensus        55 ~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~  114 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCA  114 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------CC---ccHHH
Confidence            566666666666554431          23455666666666    66777776666666542       12   24566


Q ss_pred             hhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          309 TCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       309 ~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                      ++|.++..    .+++++|+.++++|++
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence            67777776    7777777777777766

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.25  E-value=0.00089  Score=69.01  Aligned_cols=94  Identities=9%  Similarity=-0.029  Sum_probs=63.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .....+..+...|++++|+..++++++.     .|.+   ..++.+++.++..+|++++|++.+++++...     |.+ 
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~-  500 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAER-----VGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----PGE-  500 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC-
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-
Confidence            3445666777889999999999888765     2333   4567889999999999999999998887642     222 


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                        ...++++|.++..+|++++ +..|++|++
T Consensus       501 --~~~~~~lg~~~~~~g~~~~-~~~~~~al~  528 (681)
T 2pzi_A          501 --LAPKLALAATAELAGNTDE-HKFYQTVWS  528 (681)
T ss_dssp             --SHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred             --hHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence              2334455555555555555 555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.24  E-value=0.0017  Score=50.33  Aligned_cols=71  Identities=13%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             CCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          255 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       255 ~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .+..+....++..++.++...|+|++|+.++++++...     +.+   ...++.+|.++...|++++|+.++++|+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34566677888999999999999999999999988642     223   567889999999999999999999999985

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.0025  Score=50.46  Aligned_cols=70  Identities=16%  Similarity=0.061  Sum_probs=60.6

Q ss_pred             ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          259 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       259 ~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +........++..+...|+|++|++++++++..     .+.++.....++.+|.++...|++++|+..+++++.+
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            344667788999999999999999999998863     3566667888999999999999999999999999986

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.22  E-value=0.0021  Score=51.61  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      ++.-......++..+...|+|++|+.++++++..     .|.++   ..++.+|.++..+|++++|+..+++|+.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3445667788999999999999999999998863     33444   55789999999999999999999999985    


Q ss_pred             cCCCCchH
Q 017649          338 HGTNSPFM  345 (368)
Q Consensus       338 ~G~~hp~~  345 (368)
                       .|++|..
T Consensus        82 -~p~~~~~   88 (142)
T 2xcb_A           82 -DINEPRF   88 (142)
T ss_dssp             -CTTCTHH
T ss_pred             -CCCCcHH
Confidence             4666644

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.18  E-value=0.003  Score=52.75  Aligned_cols=73  Identities=12%  Similarity=0.063  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC----C-ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ----F-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~----~-hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      .....+.+..+...|+|++|++.+++++..... +|.    + .|..+..+.++|.++..+|++++|+..+.+|++++.
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            344567888899999999999999999987654 221    1 133566899999999999999999999999999743

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.17  E-value=0.00072  Score=69.73  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=72.3

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      ...|++++|++.+++++...-..-...++....++..++.++..+|++++|++.++++++..     |.+   ...++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWR---WRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCC---HHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cch---HHHHHHH
Confidence            57789999999998887211111112233344567789999999999999999999998742     333   4578899


Q ss_pred             hhHhhhcCChHHHHHHHHHHHHh
Q 017649          311 GKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      |.++..+|++++|+..|++|+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999975

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=97.12  E-value=0.00027  Score=58.65  Aligned_cols=43  Identities=14%  Similarity=0.142  Sum_probs=38.5

Q ss_pred             cccccCCCc---cCcEEEEeCCEEEEEEccCCCCCCeeEEeccCCC
Q 017649           96 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA  138 (368)
Q Consensus        96 ~s~~nHsC~---PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~  138 (368)
                      +.++||+|.   +|+...-.++.+.++|+|+|++|+||++-|.+.+
T Consensus        97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y  142 (152)
T 3ihx_A           97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY  142 (152)
T ss_dssp             GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred             eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence            468899998   7998877888999999999999999999998654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.12  E-value=0.0028  Score=49.74  Aligned_cols=66  Identities=17%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ........++.++...|+|++|+.++++++...     |.+   ...++.+|.++..+|++++|+..+++|+.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLV---AVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            345667889999999999999999999988742     333   467899999999999999999999999985

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.10  E-value=0.0051  Score=47.01  Aligned_cols=76  Identities=9%  Similarity=-0.073  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      ...|+..+...|+|..|+.+++.++.....--. .-+.....+..||..+..+|++++|+.++++|+.     +.|+|+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~   81 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHH
Confidence            346899999999999999999999987642211 1234456778999999999999999999999987     4677866


Q ss_pred             HH
Q 017649          345 MK  346 (368)
Q Consensus       345 ~~  346 (368)
                      +.
T Consensus        82 ~~   83 (104)
T 2v5f_A           82 AN   83 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.09  E-value=0.0013  Score=48.95  Aligned_cols=67  Identities=27%  Similarity=0.333  Sum_probs=54.1

Q ss_pred             HHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          267 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       267 ~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      ..+..+...|+|++|+.++++++..     .|.++.  ..++.+|.++..+|++++|+..+++|+.+     .|+++..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   71 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-----EPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPAL   71 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Confidence            5677888999999999999998874     233432  16889999999999999999999999975     4566544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.01  E-value=0.0031  Score=57.76  Aligned_cols=90  Identities=13%  Similarity=0.057  Sum_probs=58.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH-H
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-G  304 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~-~  304 (368)
                      .|..+...|++++|.+++..+..     .+|.+.    +...++.++...++|++|+.+++.+..     +  .+|.. .
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~--~d~~~~~  171 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPV-----AGSEHL----VAWMKAVVYGAAERWTDVIDQVKSAGK-----W--PDKFLAG  171 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTGGG-----C--SCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh-----cCCchH----HHHHHHHHHHHcCCHHHHHHHHHHhhc-----c--CCcccHH
Confidence            34455677888888877654321     233332    556677777788888888777764432     1  14444 3


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      ...+.||.++..+|++++|+.+|++|.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            366777888888888888888888776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.01  E-value=0.0069  Score=55.43  Aligned_cols=97  Identities=11%  Similarity=-0.043  Sum_probs=73.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l-~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      +..+..+...++|++|+..++.+..      .+ ++.. ..+...|+.++..+|++++|++++++++.      |+.-|.
T Consensus       139 ~~~a~l~~~~~r~~dA~~~l~~a~~------~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~  205 (282)
T 4f3v_A          139 WMKAVVYGAAERWTDVIDQVKSAGK------WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA  205 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTGGG------CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhhc------cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc
Confidence            3444566788899999988763311      12 2222 45788999999999999999999998763      332255


Q ss_pred             -HHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          303 -LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       303 -~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                       ..-..+++|.++..+|+.++|+..|++++..
T Consensus       206 ~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          206 CARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             5567899999999999999999999999873

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.99  E-value=0.0054  Score=54.57  Aligned_cols=89  Identities=19%  Similarity=0.142  Sum_probs=70.7

Q ss_pred             HHHHHhhh----cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhc
Q 017649          225 KKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       225 ~~a~~~~~----~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      ..+..+..    .+++++|+..++++...       .   ...+..+|+.+|..    .+++++|+.+++++++.     
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----  143 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----  143 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----
Confidence            34445566    88999999999888653       1   24677889999998    99999999999988863     


Q ss_pred             CCCChHHHHHHhhhhhHhhh----cCChHHHHHHHHHHHHh
Q 017649          297 PQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       297 g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~kAl~i  333 (368)
                      +  +   ...++++|.++..    .+++++|+.++++|++.
T Consensus       144 ~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          144 N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            2  2   3467889999988    89999999999999875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.98  E-value=0.0051  Score=47.10  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=56.0

Q ss_pred             ccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          259 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       259 ~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +........++..+...|++++|+.++++++...        |.....++.+|.++...|++++|+..+.+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            3445667788999999999999999999988642        223457889999999999999999999999985

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.94  E-value=0.0031  Score=46.83  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=48.0

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHH-HHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ-TREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~-~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      +.+..+...|++++|+..+++++..     .|.+   .. ++..++.+|..+|++++|++++++++..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-----EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4556677889999999999998764     3433   34 6788999999999999999999999864

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=96.93  E-value=0.00068  Score=59.98  Aligned_cols=57  Identities=12%  Similarity=-0.004  Sum_probs=41.0

Q ss_pred             cccccCCCc---cCcEEEEeCCEEEEEEccCCCCCCeeEEeccCCCCCHHHHHHHHhcCCCeEeeccccC
Q 017649           96 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCI  162 (368)
Q Consensus        96 ~s~~nHsC~---PN~~~~~~~~~~~~~a~~~i~~geel~~~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~  162 (368)
                      +.++||+|.   +|+...-.++.+.++|+|+|++|+||++-|.+.++.          ..+-.|.++.|.
T Consensus       141 mRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y~~----------~l~~~~~~~~~~  200 (237)
T 3ray_A          141 MRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMK----------RLHSMSQETIHR  200 (237)
T ss_dssp             GGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHHHH----------HHCC--------
T ss_pred             eeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHHHH----------Hhcccccchhcc
Confidence            468899996   698888788999999999999999999999987642          233456666663

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.90  E-value=0.0016  Score=48.72  Aligned_cols=61  Identities=11%  Similarity=0.104  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...++.++...|++++|+.++++++...     +.+   ...++.+|.++..+|++++|+..+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4568889999999999999999988742     233   346789999999999999999999999976

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.90  E-value=0.007  Score=45.41  Aligned_cols=64  Identities=13%  Similarity=0.104  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ......++..+...|+|++|+.++++++...     |.+   ...++.+|.++...|++++|+..+++++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            3456778899999999999999999988642     333   356788999999999999999999999986

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.88  E-value=0.0066  Score=45.99  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..+...++.++...|++++|++++++++...     +.+   ...++.+|.++...|++++|+.++++++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            4566788999999999999999999988642     233   356789999999999999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.87  E-value=0.0074  Score=47.24  Aligned_cols=68  Identities=10%  Similarity=-0.055  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      ...++..+...|++++|+..+++++...     |.+   ...++.+|.++...|++++|+..+++|+++     .|+++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~   86 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-----PER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIA   86 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence            4567888999999999999999988732     333   456789999999999999999999999985     455554


Q ss_pred             H
Q 017649          345 M  345 (368)
Q Consensus       345 ~  345 (368)
                      .
T Consensus        87 ~   87 (121)
T 1hxi_A           87 V   87 (121)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.79  E-value=0.0021  Score=49.80  Aligned_cols=62  Identities=19%  Similarity=0.095  Sum_probs=48.0

Q ss_pred             hhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          274 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       274 ~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      .+|++++|+.++++++..     ++.+|.....++++|.++..+|++++|+..+++|+++     .|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHH
Confidence            468899999999998873     3447888899999999999999999999999999986     4555433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.77  E-value=0.0053  Score=55.84  Aligned_cols=69  Identities=14%  Similarity=-0.000  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          260 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      .-..++.+|+.++...|++++|+..+++++...    | .+ .-+..+.+||.++..+|+.++|+..+++++..+
T Consensus       217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~----p-~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~  285 (287)
T 3qou_A          217 EDAALATQLALQLHQVGRNEEALELLFGHLRXD----L-TA-ADGQTRXTFQEILAALGTGDALASXYRRQLYAL  285 (287)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-TG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----c-cc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence            344568899999999999999999999988742    2 22 124667899999999999999999999998754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.70  E-value=0.0076  Score=45.31  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  293 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e  293 (368)
                      ....+..+...|++++|+..+++++++     .|.++   .++..++.+|..+|++++|++.+++++....
T Consensus        10 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           10 RYALAQEHLKHDNASRALALFEELVET-----DPDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            445666777899999999999998875     34333   4678899999999999999999999998654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.65  E-value=0.0063  Score=51.53  Aligned_cols=88  Identities=8%  Similarity=-0.139  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ......+..+...|++++|+..+++++.+     .|.   ...++..++.+|..+|++++|+.++++++..     .|.+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~  155 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKN---NVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNN  155 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Ccc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc
Confidence            34556677788899999999999998875     333   3467788999999999999999999998865     2334


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAI  324 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~  324 (368)
                      +   ..+..++.++..+++..++.
T Consensus       156 ~---~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          156 L---DIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             H---HHHHHHHHHHHHHHHHHC--
T ss_pred             H---HHHHHHHHHHHHHHHHHHHH
Confidence            3   45677888888888777776

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.62  E-value=0.0052  Score=55.75  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..++..+...|+|++|+.++++++..        +|.....++++|.++..+|++++|+..+++|+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            455678899999999999999999999874        2334567889999999999999999999999975

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.60  E-value=0.0078  Score=50.04  Aligned_cols=67  Identities=13%  Similarity=-0.027  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ..++..++.++...|++++|+..+++++..    .|...  -...+..+|.++..+|+.++|+..|++++.-+
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~--~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKV----NLGAQ--DGEVKKTFMDILSALGQGNAIASKYRRQLYSI  174 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTTT--TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CcccC--hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            456788999999999999999999988763    22211  12456789999999999999999999998643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.59  E-value=0.0081  Score=58.63  Aligned_cols=90  Identities=6%  Similarity=-0.029  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ....+.+..+...|++++|+..+.+++.+     .|.+   ..++.+++.+|..+|+|++|+..+++++..        .
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~  381 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGL-----DSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------N  381 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            34456677788889999999999999875     2333   567889999999999999999999999874        2


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHH
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKS  326 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~  326 (368)
                      |.-...+..++.++..++++++|.+.
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345678899999999998887754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.55  E-value=0.0084  Score=51.79  Aligned_cols=30  Identities=10%  Similarity=-0.148  Sum_probs=16.0

Q ss_pred             HHHHHhhhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       303 ~~~~l~~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                      ....+++||.++..    .+++++|+.++++|.+
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            34555555555555    4455555555555544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.49  E-value=0.024  Score=51.65  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh
Q 017649          237 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  316 (368)
Q Consensus       237 ~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~  316 (368)
                      ++|+..+++++..    ++|.+   ..+...++.++...|++++|...+++++..     +|.++..  .+.++|.++..
T Consensus        81 ~~A~~~~~rAl~~----~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~  146 (308)
T 2ond_A           81 DEAANIYERAIST----LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHTT----TTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHH
Confidence            7888888877652    23443   345677888888999999999999998873     4455532  56777888888


Q ss_pred             cCChHHHHHHHHHHHHh
Q 017649          317 LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       317 ~g~~~eA~~~l~kAl~i  333 (368)
                      .|++++|+..|++|++.
T Consensus       147 ~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          147 AEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHCHHHHHHHHHHHHTS
T ss_pred             hcCHHHHHHHHHHHHhc
Confidence            88888998888888864

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.48  E-value=0.011  Score=56.20  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh--------cCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRV--------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~--------~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..++..+...|+|++|+.++++++......        ....+|.....++++|.++..+|++++|+.++++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            3456678999999999999999999999866542        11256778889999999999999999999999999985

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.24  E-value=0.039  Score=47.47  Aligned_cols=63  Identities=14%  Similarity=0.007  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhc-C-----ChHHHHHHHHHHH
Q 017649          262 MQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-G-----DTENAIKSMTEAV  331 (368)
Q Consensus       262 ~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~-g-----~~~eA~~~l~kAl  331 (368)
                      ..+..+|+.+|..    .+++++|+.+++++++     . +.++.   .+++||.++... |     ++++|+.+|++|.
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~-~~~~~---a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-----L-SRTGY---AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----T-SCTTH---HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----c-CCCHH---HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            5555555555555    4555555555555543     0 34433   456666666543 2     5667777777666


Q ss_pred             Hh
Q 017649          332 EI  333 (368)
Q Consensus       332 ~i  333 (368)
                      +.
T Consensus       196 ~~  197 (212)
T 3rjv_A          196 LE  197 (212)
T ss_dssp             HH
T ss_pred             Hc
Confidence            53

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.22  E-value=0.0095  Score=55.64  Aligned_cols=95  Identities=7%  Similarity=-0.137  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      ...+.+..+...|++++|+..+++++.+     .|.+   ..++.+++.+|..+|+|++|+.++++++...     |.++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-----p~~~  298 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTE-----EEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYA-----PDDK  298 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCH
Confidence            3456677788899999999999998875     3333   5678899999999999999999999998753     3343


Q ss_pred             HHHHHHhhhhhHh-hhcCChHHHHHHHHHHHH
Q 017649          302 LLGLQYYTCGKLE-WFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       302 ~~~~~l~~La~l~-~~~g~~~eA~~~l~kAl~  332 (368)
                         ..+..|+.+. ...+..+++...|.+++.
T Consensus       299 ---~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          299 ---AIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             --------------------------------
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence               3445666663 344666777778877765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.14  E-value=0.094  Score=39.69  Aligned_cols=75  Identities=7%  Similarity=-0.096  Sum_probs=56.9

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      -++.+..++..|+|..|+..++.++.....--. .......++..|+.++..+|++++|+.+.++++.     +.|.|+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~   81 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHH
Confidence            345566778899999999999999876432110 1234567789999999999999999999999886     3567765


Q ss_pred             H
Q 017649          303 L  303 (368)
Q Consensus       303 ~  303 (368)
                      .
T Consensus        82 ~   82 (104)
T 2v5f_A           82 A   82 (104)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.98  E-value=0.04  Score=41.90  Aligned_cols=63  Identities=11%  Similarity=-0.029  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  293 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e  293 (368)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++....
T Consensus        22 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           22 RFTLGKTYAEHEQFDAALPHLRAALDF-----DPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            445666777899999999999998865     2333   45678899999999999999999999988654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.94  E-value=0.099  Score=43.01  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=66.9

Q ss_pred             cHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhhhHHhhcCCCCh-HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          260 NLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g---~~~~Al~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      ...++..+++.++...+   ++.+++.+++.++..-       +| ..--.+|.||..+..+|+|++|+.++++++++  
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            34677888888888865   8889999888877632       35 34567899999999999999999999999974  


Q ss_pred             cccCCCCchHHHHHHHHHHHH
Q 017649          336 ITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       336 ~~~G~~hp~~~~l~~~L~~~~  356 (368)
                         -|+|+....+...+++..
T Consensus       101 ---eP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A          101 ---EPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             ---CTTCHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHH
Confidence               578888888777765543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.91  E-value=0.049  Score=49.54  Aligned_cols=98  Identities=10%  Similarity=-0.067  Sum_probs=58.9

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH-------------h-
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ-------------R-  294 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e-------------~-  294 (368)
                      .....|++++|...|++++.     ++|.++..  +..+++.++...|++++|...+++++..-.             . 
T Consensus       108 ~~~~~~~~~~A~~~~~~al~-----~~p~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          108 YEESRMKYEKVHSIYNRLLA-----IEDIDPTL--VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT-----SSSSCTHH--HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHh-----ccccCccH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34456788888888887765     24444421  456677777777777777777777654210             0 


Q ss_pred             hcCC-------------CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          295 VYPQ-------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       295 ~~g~-------------~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..|.             .+|.-...+..+|.++..+|++++|+..|++|+..
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            0000             01122334456677777778888888888888764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.86  E-value=0.061  Score=43.01  Aligned_cols=85  Identities=15%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .+...+..++|++.++++.+.          ....+..+|+.+|..    .+++++|+++++++.+.       .+   .
T Consensus        34 ~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~   93 (138)
T 1klx_A           34 VSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---Q   93 (138)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---H
T ss_pred             HHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC---H
Confidence            344445677788888877653          124677889999988    78999999999998762       23   3


Q ss_pred             HHHhhhhhHhhh----cCChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWF----LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~----~g~~~eA~~~l~kAl~i  333 (368)
                      ..+++||.++..    .+++++|+.++++|.+.
T Consensus        94 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           94 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            567899999988    89999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.74  E-value=0.059  Score=40.28  Aligned_cols=82  Identities=9%  Similarity=0.012  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhhh---HHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649          263 QTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  339 (368)
Q Consensus       263 ~~~~~La~~~~~~g~---~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G  339 (368)
                      ..+..++.++...++   .++|..++++++.     .-|.++   ..++.+|.++...|++++|+.+++++++.     .
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-----~dp~~~---rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-----~   73 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-----LEPYNE---AALSLIANDHFISFRFQEAIDTWVLLLDS-----N   73 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-----HCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTC-----C
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----HCcCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Confidence            345556666654444   6899999999887     234444   55677899999999999999999998863     3


Q ss_pred             CCCchHHHHHHHHHHHHH
Q 017649          340 TNSPFMKELILKLEEAQA  357 (368)
Q Consensus       340 ~~hp~~~~l~~~L~~~~~  357 (368)
                      |+.|....+...+++++.
T Consensus        74 p~~~~~~~i~~~I~~A~~   91 (93)
T 3bee_A           74 DPNLDRVTIIESINKAKK   91 (93)
T ss_dssp             CTTCCHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHh
Confidence            336666677777766654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.71  E-value=0.13  Score=42.78  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=71.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhc---ccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~---~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      +.+....+...|-|+.|+-+...++.+...   ++.|  ..-.+++..+|.++...|+|.+|..++++++...+.+.-..
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp--~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP--PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            334444556778899998888877665422   2222  12346677899999999999999999999998876432111


Q ss_pred             C-----------------hHHHHHHhhhhhHhhhcCChHHHHHHHH
Q 017649          300 H-----------------PLLGLQYYTCGKLEWFLGDTENAIKSMT  328 (368)
Q Consensus       300 h-----------------p~~~~~l~~La~l~~~~g~~~eA~~~l~  328 (368)
                      .                 +.-.-..|++|..+..++++++|+..++
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence            0                 1112466889999999999999988754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.54  E-value=0.16  Score=48.47  Aligned_cols=123  Identities=7%  Similarity=0.037  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhc-ccCCc-c------------ccHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKK-LYHPF-S------------VNLMQTREKLIKILMELEDWKEALAYCQ  286 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~-~l~~~-h------------~~l~~~~~~La~~~~~~g~~~~Al~~~~  286 (368)
                      +.+...+......|+.++|...+..++.+.+. .|... .            ...+.+...++.++...|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34444444445667888888888888887543 22211 1            1122345556777778899999998887


Q ss_pred             hhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC-CchHHHHHHH
Q 017649          287 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILK  351 (368)
Q Consensus       287 ~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~-hp~~~~l~~~  351 (368)
                      .++..        ||..-..+..|-.++...|+..+|+..|++.-+.+...+|-+ .|.+.++...
T Consensus       196 ~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~  253 (388)
T 2ff4_A          196 ALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  253 (388)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            77542        233223344555567889999999999999999999999976 4566665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.86  E-value=0.42  Score=45.64  Aligned_cols=107  Identities=18%  Similarity=0.055  Sum_probs=84.1

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH-
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-  303 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~-  303 (368)
                      ..+.-+...|+|.+|.+++.+++.-..++ + +...++.+.-.-.++|..++++.++..++..+..+...++  .||.+ 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~  179 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKL-D-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQ  179 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTS-S-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcc-c-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHH
Confidence            45566789999999999998887765543 2 2456677777788899999999999999999988877665  66765 


Q ss_pred             HHHHhhhhhHhh-hcCChHHHHHHHHHHHHhhc
Q 017649          304 GLQYYTCGKLEW-FLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       304 ~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i~~  335 (368)
                      |.....-|.++. ..++|.+|-.+|-+|..-+.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            555556677777 79999999999999976554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.50  E-value=0.24  Score=48.04  Aligned_cols=48  Identities=19%  Similarity=0.081  Sum_probs=25.8

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIP  290 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~  290 (368)
                      .+++++|+..++++...       .+   ..+...|+.+|..    .+++++|+.+++++.+
T Consensus        92 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK-------GL---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            55666666666665432       11   2334455555555    4566666666655543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.49  E-value=0.074  Score=44.12  Aligned_cols=48  Identities=8%  Similarity=0.063  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-----------hHHHHHHHHHhhhhh
Q 017649          236 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----------DWKEALAYCQLTIPV  291 (368)
Q Consensus       236 ~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-----------~~~~Al~~~~~~l~~  291 (368)
                      +++|+..+++++++        ++....++.+|+.+|..+|           +|++|++++++++++
T Consensus        62 ~~eAi~~le~AL~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           62 IQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            45888888888765        3445667889999998875           899999999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.38  E-value=0.29  Score=47.51  Aligned_cols=92  Identities=11%  Similarity=0.003  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhh----cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhH
Q 017649          221 NILSKKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVY  292 (368)
Q Consensus       221 ~~l~~~a~~~~~----~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~  292 (368)
                      ......+..+..    .+++++|+..++++.+.       .+   ..+...|+.+|..    .+++++|+++++++.+. 
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  108 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-  108 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            334444444555    78999999999988653       12   4567889999998    89999999999998752 


Q ss_pred             HhhcCCCChHHHHHHhhhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          293 QRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       293 e~~~g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                            .++   ..++.||.++..    .+++++|+.++++|.+
T Consensus       109 ------~~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A          109 ------GLP---QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             ------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence                  233   445667777776    6777788888777765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.05  E-value=0.66  Score=45.40  Aligned_cols=55  Identities=13%  Similarity=0.015  Sum_probs=36.8

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649          229 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  290 (368)
Q Consensus       229 ~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~  290 (368)
                      .....|++++|..++++++.+     +|.++.  .+...++..+...|++++|.+++++++.
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHS-----SSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHHHHHHHhCc-----cccCch--HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            344568888998888888763     343321  2455666667777777777777777664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.72  E-value=0.16  Score=40.42  Aligned_cols=77  Identities=10%  Similarity=-0.002  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHh
Q 017649          235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  314 (368)
Q Consensus       235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~  314 (368)
                      ++++|++.++++.+.-       ++.-   .  |+.+|...+.+++|+++++++.+.       .++   ..+++||.++
T Consensus        10 d~~~A~~~~~~aa~~g-------~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~---~a~~~Lg~~y   67 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-------EMFG---C--LSLVSNSQINKQKLFQYLSKACEL-------NSG---NGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-------CTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-------CHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHHH
Confidence            5677888887775431       2221   1  888888888899999999998763       333   6789999999


Q ss_pred             hh----cCChHHHHHHHHHHHHh
Q 017649          315 WF----LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       315 ~~----~g~~~eA~~~l~kAl~i  333 (368)
                      ..    .+++++|+.++++|.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC
Confidence            88    88999999999999863

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=93.40  E-value=0.49  Score=46.35  Aligned_cols=87  Identities=11%  Similarity=0.052  Sum_probs=62.3

Q ss_pred             cCChH-------HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          233 CGNHQ-------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       233 ~g~~~-------eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .|+++       +|+..+++++..    ..|.+   ..+...++.++...|++++|...+++++..     +|.+|.  .
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~----~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAIST----LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--L  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTT----TCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHH--H
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHH----hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCch--H
Confidence            68876       777777766531    22333   455677888899999999999999998873     455443  3


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .+..+|.++...|++++|+..|++|++.
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            5566677777778888888888888763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.33  E-value=0.55  Score=43.27  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=65.6

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh-----cCCCChHHHHHHhh
Q 017649          235 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-----YPQFHPLLGLQYYT  309 (368)
Q Consensus       235 ~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~-----~g~~hp~~~~~l~~  309 (368)
                      ++++|...|+.+...    + |. ......+.+   +++.+|+|++|.+.++.++..+-.+     ..+++|.+   +.+
T Consensus       193 ~~q~A~~~f~El~~~----~-p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~---LaN  260 (310)
T 3mv2_B          193 TATSNFYYYEELSQT----F-PT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF---LAN  260 (310)
T ss_dssp             TTTHHHHHHHHHHTT----S-CS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH---HHH
T ss_pred             cHHHHHHHHHHHHHh----C-CC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH---HHH
Confidence            788888888775332    2 21 111122222   7899999999999888666554221     12556655   566


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      +..+...+|+  +|..++.++.+     .-|+||.+.++..+
T Consensus       261 ~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          261 QITLALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQEI  295 (310)
T ss_dssp             HHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHHH
T ss_pred             HHHHHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHHH
Confidence            6667777787  88888888876     35999999998866

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.26  E-value=0.28  Score=54.04  Aligned_cols=95  Identities=9%  Similarity=-0.009  Sum_probs=67.4

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH---------
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---------  293 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e---------  293 (368)
                      ....+..+.+.|++++|...|.++                .....++.++..+|++++|++.++++....-         
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            445677788888999998888764                2455688889999999999999988754321         


Q ss_pred             --------hhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          294 --------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       294 --------~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                              ...|-.-..-+..+..++..|...|.+++|+.++++|+.+
T Consensus      1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             hhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                    0112111111234557788888999999999999999653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.16  E-value=0.4  Score=46.33  Aligned_cols=86  Identities=16%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             HHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh----hhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          227 TLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----EDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       227 a~~~~~~g---~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~----g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      +..+...|   ++++|+..++++...     ++   .......+|+.+|...    +++++|+++++++.        +.
T Consensus       183 g~~~~~~g~~~~~~~A~~~~~~aa~~-----g~---~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--------~g  246 (452)
T 3e4b_A          183 ATVYQKKQQPEQQAELLKQMEAGVSR-----GT---VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--------PG  246 (452)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHT-----TC---SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--------GG
T ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHC-----CC---HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--------CC
Confidence            33444456   677777777666542     11   1222334566666443    46666666666553        12


Q ss_pred             ChHHHHHHhhhhhH-h--hhcCChHHHHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKL-E--WFLGDTENAIKSMTEAV  331 (368)
Q Consensus       300 hp~~~~~l~~La~l-~--~~~g~~~eA~~~l~kAl  331 (368)
                      +|   ..+++||.+ +  ...+++++|+.+|++|.
T Consensus       247 ~~---~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          247 YP---ASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             ST---HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             CH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            22   344555555 2  34556666666666655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.11  E-value=0.44  Score=35.34  Aligned_cols=63  Identities=10%  Similarity=-0.116  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          236 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       236 ~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      ..+|..++++++..        ++.-.+++..++..+...|+|.+|+.+++++++.    .|+ .|.+......+.
T Consensus        25 ~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~----~p~-~~~~~~i~~~I~   87 (93)
T 3bee_A           25 TDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS----NDP-NLDRVTIIESIN   87 (93)
T ss_dssp             CHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC----CCT-TCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-CccHHHHHHHHH
Confidence            68999999998874        3444567778999999999999999999998863    344 555544444433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=92.88  E-value=0.21  Score=48.45  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHh
Q 017649          215 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  294 (368)
Q Consensus       215 ~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~  294 (368)
                      ..-..+......|..+...|++++|++.++++.          +   ..+...+..++...|+|+.|......++     
T Consensus       143 ~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----  204 (449)
T 1b89_A          143 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHIV-----  204 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred             HHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence            333444555667778888899999999888761          1   3455677888999999999965544311     


Q ss_pred             hcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          295 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       295 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                          .||.-   +..+..+|...|++++|+.++++++.+=
T Consensus       205 ----~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le  237 (449)
T 1b89_A          205 ----VHADE---LEELINYYQDRGYFEELITMLEAALGLE  237 (449)
T ss_dssp             ----TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred             ----hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence                34443   3357778889999999999999998543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.62  E-value=0.39  Score=53.01  Aligned_cols=96  Identities=16%  Similarity=0.061  Sum_probs=65.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhh--c-cc------C-----CccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQK--K-LY------H-----PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~--~-~l------~-----~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      .|..+...|.+++|..+|+++.....  . ++      .     ........+...+|.++...|+|++|++.+.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            45566777888888877776421100  0 00      0     012233456778889999999999998887664   


Q ss_pred             HHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          292 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       292 ~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                             ++|   ..++++|..+..+|++++|+++|..|....
T Consensus      1132 -------dD~---say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1132 -------DDP---SSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             -------CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence                   222   345678889999999999999999888754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.15  E-value=0.85  Score=37.88  Aligned_cols=70  Identities=20%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-----------------cccHHHHHHHHHHHHHhhhhHHH
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-----------------SVNLMQTREKLIKILMELEDWKE  280 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~-----------------h~~l~~~~~~La~~~~~~g~~~~  280 (368)
                      .+.+.+.-.|+.++.+|+|..|...|++++...+.+.-..                 -..=.+++..++.+|..++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            3456677788889999999999999999988765432111                 11123688999999999999999


Q ss_pred             HHHHHHh
Q 017649          281 ALAYCQL  287 (368)
Q Consensus       281 Al~~~~~  287 (368)
                      |+.+.+.
T Consensus       141 Ai~~Le~  147 (167)
T 3ffl_A          141 AIAILDG  147 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=91.55  E-value=1.1  Score=43.07  Aligned_cols=80  Identities=14%  Similarity=0.036  Sum_probs=51.1

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-----hHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----DWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-----~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      ...+++++|+..++++.+..          ...+..+|+.+|. .|     ++++|+.+++++.        +.+|   .
T Consensus       262 ~~~~d~~~A~~~~~~Aa~~g----------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~---~  319 (452)
T 3e4b_A          262 PELGDVEQMMKYLDNGRAAD----------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREV---A  319 (452)
T ss_dssp             GGGCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCH---H
T ss_pred             CCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCH---H
Confidence            35678888888887765321          2345667777776 44     7888888877765        2233   4


Q ss_pred             HHhhhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       306 ~l~~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                      .+++||.++..    ..++++|+.+|++|.+
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            55666766654    2366777777776654

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=91.46  E-value=1.4  Score=38.41  Aligned_cols=61  Identities=8%  Similarity=-0.018  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh-hcCChHHHHHHHHHHHHhhcc
Q 017649          276 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       276 g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      |+-+.|...++.+.++...-+||.||.+.....|.+..+. .++..++|..+.++|+++.+.
T Consensus       139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~  200 (227)
T 2o8p_A          139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL  200 (227)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            5567889999999999988899999998666666766665 578999999999999997643

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.43  E-value=1.8  Score=41.53  Aligned_cols=103  Identities=6%  Similarity=-0.113  Sum_probs=76.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      .+.|.-+...|++++|.+.+.++......   +  ...+.+.-.+..++...++|..+..+..++.....   ...+|.+
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~  206 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAIS---T--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWER  206 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTC---C--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC---h--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHH
Confidence            34566677889999999999987765432   2  34567777888899999999999999988866543   3344544


Q ss_pred             -HHHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          304 -GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       304 -~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                       +.....-|.+++..++|.+|-.+|..+...+
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             4455556888889999999999998876544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.00  E-value=0.86  Score=41.58  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh-----hhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          237 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       237 ~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~-----g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      .+|..+.++++++     .| +..-..++..|+.+|...     |+.++|.+++++++.+-    |...+   ...+..|
T Consensus       180 ~~A~a~lerAleL-----DP-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~i---d~~v~YA  246 (301)
T 3u64_A          180 HAAVMMLERACDL-----WP-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHDP---DHHITYA  246 (301)
T ss_dssp             HHHHHHHHHHHHH-----CT-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTCS---HHHHHHH
T ss_pred             HHHHHHHHHHHHh-----CC-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCCc---hHHHHHH
Confidence            4555556666554     22 222355788899999885     99999999999999743    21113   3456667


Q ss_pred             hHhhh-cCChHHHHHHHHHHHHh
Q 017649          312 KLEWF-LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       312 ~l~~~-~g~~~eA~~~l~kAl~i  333 (368)
                      ..+.. .|++++|..++++|+.+
T Consensus       247 ~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          247 DALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCHHHHHHHHHHHHcC
Confidence            77777 59999999999999984

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=90.50  E-value=0.98  Score=36.99  Aligned_cols=72  Identities=10%  Similarity=-0.022  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhc
Q 017649          221 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  296 (368)
Q Consensus       221 ~~l~~~a~~~~~~g---~~~eA~~l~~~~l~~~~~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~  296 (368)
                      +..++.|..+...+   ++++++.+++.+++..       ++ .--.+++.|+..+.++|+|++|.+++++++++-    
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie----  101 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE----  101 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence            34455566665555   5668888887776532       12 335678899999999999999999999998743    


Q ss_pred             CCCChHHH
Q 017649          297 PQFHPLLG  304 (368)
Q Consensus       297 g~~hp~~~  304 (368)
                       |.|++..
T Consensus       102 -P~n~QA~  108 (152)
T 1pc2_A          102 -PQNNQAK  108 (152)
T ss_dssp             -TTCHHHH
T ss_pred             -CCCHHHH
Confidence             5666543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=90.28  E-value=0.16  Score=49.24  Aligned_cols=54  Identities=9%  Similarity=0.029  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +...++..+...|.|++|..++.++                ..+.+||..+..+|++++|++.+++|..+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~  177 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST  177 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence            6778888888999999998888865                35678899999999999999999998433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.61  E-value=4.4  Score=31.91  Aligned_cols=83  Identities=12%  Similarity=0.057  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHHHHhhhh---HHHHHHHHHhhhhhHHhhcCCCCh-HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          260 NLMQTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       260 ~l~~~~~~La~~~~~~g~---~~~Al~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      ....+..++|.++....+   ..+++.+++       .++...+| ..--.+|.||..+..+|+|.+|+.++...+++  
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe-------~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLE-------ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHH-------HHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------HHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--
Confidence            446778888888876543   334554444       44444556 45567889999999999999999998888763  


Q ss_pred             cccCCCCchHHHHHHHHHH
Q 017649          336 ITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       336 ~~~G~~hp~~~~l~~~L~~  354 (368)
                         -|+++-...+...+++
T Consensus       104 ---eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A          104 ---EPQNNQAKELERLIDK  119 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHH
Confidence               4667666666666544

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=88.61  E-value=7.9  Score=34.21  Aligned_cols=55  Identities=9%  Similarity=-0.037  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i  333 (368)
                      +.|...++.+.++...-+||.||.+.....+.+..+.. ++..++|..+-++|++-
T Consensus       148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~  203 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD  203 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46777888888888889999999987777777777665 78999999988877653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=88.54  E-value=1.3  Score=41.87  Aligned_cols=63  Identities=14%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          262 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       262 ~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..++..++.++...|++++|+.+.++++..-     + +   ...+..+|.++...|++++|+..|.+|+.+
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3345556666777799999999999999863     2 2   345678899999999999999999999974

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=88.54  E-value=8.3  Score=34.40  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhhhhHHhhc--CCCChHHHHHHhhhhhHhh-hcCChHHHHHHHHHHHHh
Q 017649          279 KEALAYCQLTIPVYQRVY--PQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~--g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i  333 (368)
                      +.|.+.++.+.++...-+  ||.||.+.....|.+..|. .++..++|..+-++|++-
T Consensus       169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            467778888888888889  9999998777777877776 479999999999999876

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=88.25  E-value=2.5  Score=37.09  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i  333 (368)
                      +.|...++.+.++...-+||.||.+.....+.+..+.. ++..++|..+-++|++-
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~  202 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  202 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46777888999988888999999987777777777665 79999999988877753

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=85.93  E-value=4.1  Score=36.28  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i  333 (368)
                      +.|...++.+.++...-+||.||.+.....+.+..+.. ++..++|..+-++|++-
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~  228 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  228 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46677888888888889999999987777777777765 68999999988877653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.74  E-value=12  Score=36.02  Aligned_cols=103  Identities=10%  Similarity=-0.034  Sum_probs=73.1

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCC-ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH-HH
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHP-FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL  305 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~-~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~-~~  305 (368)
                      ..+...|++.+|.+++..+..-   ..+. +....+...-..+++|...+||.+|..+..++....-..  +.+|.+ +.
T Consensus       145 ~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~  219 (445)
T 4b4t_P          145 EIKKEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLE  219 (445)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHH
Confidence            3455779999999988876532   1222 233445666677888999999999999888865433222  345554 56


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      .+...|.++...++|.+|-.+|.++.+...
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~  249 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQTDA  249 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence            666779999999999999999998876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.33  E-value=25  Score=33.20  Aligned_cols=106  Identities=16%  Similarity=0.082  Sum_probs=72.3

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHH--HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ--TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~--~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      +..+.-++++..+++-..    ......++  +-..|+..|...|+|.+|++...+++.-+.+.-.  ...+.-.+..-.
T Consensus        73 ~~~~~~~~~~~~~~~~a~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~lle~  146 (394)
T 3txn_A           73 AGTGIEVQLCKDCIEWAK----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQLLES  146 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHH
Confidence            344444555555544221    11222333  3347999999999999999999999888876532  233444455557


Q ss_pred             hHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          312 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      +++..++++.++...|.+|..+....+  .||.+..
T Consensus       147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a  180 (394)
T 3txn_A          147 KTYHALSNLPKARAALTSARTTANAIY--CPPKVQG  180 (394)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHH
Confidence            888999999999999999999887654  5665543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=84.99  E-value=2.9  Score=38.40  Aligned_cols=58  Identities=9%  Similarity=-0.095  Sum_probs=42.2

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      .+..+...|++++|++++.+.+..     +| +...+.++-.+++++..+|+.+.|.+.+++..
T Consensus       106 la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B          106 LATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344455679999999988876431     12 24567777889999999999999988876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=84.56  E-value=9.9  Score=37.79  Aligned_cols=88  Identities=15%  Similarity=0.052  Sum_probs=52.6

Q ss_pred             hhcCC-hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhh----------HHHHHHHHHhhhhhHHhhcCCC
Q 017649          231 TSCGN-HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED----------WKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       231 ~~~g~-~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~----------~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      ...|+ .++|++.+.+++.+     .|.++   .+.+.-+.++..+|+          +++|++++.+++....+-    
T Consensus        39 ~~~~~~~eeal~~~~~~l~~-----nP~~~---taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~----  106 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGA-----NPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS----  106 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----
T ss_pred             HHcCCCCHHHHHHHHHHHHH-----CchhH---HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----
Confidence            34444 46778888887764     34444   344444555555666          889999988888633222    


Q ss_pred             ChHHHHHHhhhhhHhhhcC--ChHHHHHHHHHHHHhh
Q 017649          300 HPLLGLQYYTCGKLEWFLG--DTENAIKSMTEAVEIL  334 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g--~~~eA~~~l~kAl~i~  334 (368)
                          ..+++.-+-++...|  ++++|+..+.+|+++-
T Consensus       107 ----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d  139 (567)
T 1dce_A          107 ----YGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (567)
T ss_dssp             ----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence                223333344444556  4577777777777653

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.81  E-value=19  Score=33.33  Aligned_cols=62  Identities=8%  Similarity=0.049  Sum_probs=31.9

Q ss_pred             hhhcCCh---HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH
Q 017649          230 LTSCGNH---QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  293 (368)
Q Consensus       230 ~~~~g~~---~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e  293 (368)
                      ....|+|   -||-++++.+.....+  ...+...+.++..-+..+.+.|++.-|.+++...+++|+
T Consensus        22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~--~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~   86 (336)
T 3lpz_A           22 RIAEGQPEEQYEAAQETRLVAARYSK--QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFR   86 (336)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCccccHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence            3455666   6666666555443211  122333444455555555555666666665555555554

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=83.50  E-value=4.8  Score=35.85  Aligned_cols=55  Identities=20%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHhh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~  334 (368)
                      +.|...++.+.++. .-+||.||.+.....+.+..|.. ++..++|..+-++|++-.
T Consensus       173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  228 (260)
T 2npm_A          173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA  228 (260)
T ss_dssp             HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            46777888888888 88999999987777777777765 799999999888877643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=83.17  E-value=8.7  Score=37.53  Aligned_cols=91  Identities=7%  Similarity=-0.030  Sum_probs=65.5

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHH
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  307 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l  307 (368)
                      ..+...|++++|.++++.....   -+.|+    ..+++.|...|...|++++|.+++....+   .-..|+.    ..+
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~---g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~G~~Pd~----~ty  178 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAF---GIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVE---SEVVPEE----PEL  178 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHT---TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCCCCH----HHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHc---CCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCCH----HHH
Confidence            3455678999999998876542   13332    45677899999999999999998887654   2122332    345


Q ss_pred             hhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          308 YTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       308 ~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ..|-..+...|+.++|..+|++-.+
T Consensus       179 ~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          179 AALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            6677778899999999999888544

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=82.70  E-value=15  Score=34.94  Aligned_cols=74  Identities=11%  Similarity=0.129  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc-cCCC-CchHHHHHHHHHHHH
Q 017649          280 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTN-SPFMKELILKLEEAQ  356 (368)
Q Consensus       280 ~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~-~G~~-hp~~~~l~~~L~~~~  356 (368)
                      .++.++.+++.+.++.|+..|.   .-|.-+|.-+...+++.||+..+-.|-++++.. |..+ ..+++|.++-..++.
T Consensus       297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneli  372 (550)
T 3u84_A          297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVI  372 (550)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHhh
Confidence            3788999999999999998775   445667888889999999999999988877643 5444 467888776655554

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=82.49  E-value=20  Score=34.11  Aligned_cols=78  Identities=10%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             HHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc-ccCCCC-chHHHHHHHHHHHHH
Q 017649          280 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI-THGTNS-PFMKELILKLEEAQA  357 (368)
Q Consensus       280 ~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~-~~G~~h-p~~~~l~~~L~~~~~  357 (368)
                      .+++++.+++.+.++.|...|.   .-+.-+|--+...+++.+|+..+-+|-+++.. .|+.+. .+++++..-..++.-
T Consensus       282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanelip  358 (489)
T 4gq4_A          282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDVIP  358 (489)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTHHH
T ss_pred             CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHhhh
Confidence            3678899999999999998883   44555677778889999999999998887764 466554 577777766666654


Q ss_pred             HHh
Q 017649          358 EAS  360 (368)
Q Consensus       358 el~  360 (368)
                      .+.
T Consensus       359 ~~l  361 (489)
T 4gq4_A          359 NLL  361 (489)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=82.05  E-value=22  Score=33.22  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             HHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc-cCCC-CchHHHHHHHHHHHHH
Q 017649          281 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTN-SPFMKELILKLEEAQA  357 (368)
Q Consensus       281 Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~-~G~~-hp~~~~l~~~L~~~~~  357 (368)
                      ++.++.+++.+.++.|+..|.   .-+.-+|.-+...+++.||+..+-+|-++.+.. |..+ ..++++..+-..++.=
T Consensus       276 ~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneliP  351 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDLIP  351 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhh
Confidence            788999999999999998775   445667888889999999999999988876643 5544 4577777665555543

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=82.03  E-value=3.6  Score=36.72  Aligned_cols=55  Identities=11%  Similarity=0.063  Sum_probs=44.3

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEI  333 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i  333 (368)
                      +.|...++.+.++...-+||.||.+.....+.+..|.. ++..++|..+-++|++-
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            46777888899988888999999987777777777665 79999999987777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=82.01  E-value=6.2  Score=39.28  Aligned_cols=90  Identities=10%  Similarity=-0.089  Sum_probs=60.0

Q ss_pred             HHhhhcC--ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          228 LALTSCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       228 ~~~~~~g--~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..-+  +++++++.+.+++++     +|.+   .++...-+.++...| .++++++++.++++.        +|.-.
T Consensus       115 w~l~~l~~~~~~~el~~~~k~l~~-----d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~  178 (567)
T 1dce_A          115 WLLSRLPEPNWARELELCARFLEA-----DERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNY  178 (567)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCH
T ss_pred             HHHHHcccccHHHHHHHHHHHHhh-----cccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCc
Confidence            3344456  678999998888775     2333   345555666677778 899999999998863        23333


Q ss_pred             HHHhhhhhHhhhc--------------CChHHHHHHHHHHHHh
Q 017649          305 LQYYTCGKLEWFL--------------GDTENAIKSMTEAVEI  333 (368)
Q Consensus       305 ~~l~~La~l~~~~--------------g~~~eA~~~l~kAl~i  333 (368)
                      .+++..+.++..+              +++++|++++.+|+.+
T Consensus       179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            4444555554442              5678999999999874

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=81.88  E-value=3.8  Score=35.95  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh-hcCChHHHHHHHHHHHHh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i  333 (368)
                      +.|...++.+.++...-+||.||.+.....+.+..+. .++..++|...-++|++-
T Consensus       150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~  205 (236)
T 3iqu_A          150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE  205 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677788888888888999999998777777777766 468999999988877653

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.03  E-value=5.5  Score=28.82  Aligned_cols=54  Identities=19%  Similarity=0.105  Sum_probs=38.1

Q ss_pred             HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc--ccCCCCchHHHHHHHHHHHH
Q 017649          303 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~--~~G~~hp~~~~l~~~L~~~~  356 (368)
                      .|+.+.+-|.-.-..|++++|..+|.+|++.+..  .+.++...-..+..++.+-.
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~   65 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYK   65 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3455555666677889999999999999998775  35666654444666665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=81.02  E-value=10  Score=38.50  Aligned_cols=91  Identities=13%  Similarity=0.046  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhh--hHHhhcC-CCChHHHHHHhh---------hh-hHhhhcCChHHHHHHHHH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIP--VYQRVYP-QFHPLLGLQYYT---------CG-KLEWFLGDTENAIKSMTE  329 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~--~~e~~~g-~~hp~~~~~l~~---------La-~l~~~~g~~~eA~~~l~k  329 (368)
                      .....||..+...|+++.|.+.+.++-+  ....++- ...+.....+-.         .| .++..+|++++|+++|.+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            4567899999999999999998887522  2222211 122222111111         12 244557999999998765


Q ss_pred             ------HHHhhccccCCCCchHHHHHHHHHH
Q 017649          330 ------AVEILRITHGTNSPFMKELILKLEE  354 (368)
Q Consensus       330 ------Al~i~~~~~G~~hp~~~~l~~~L~~  354 (368)
                            |+.+. .+||+++..+.++..+..+
T Consensus       762 ~~~~~~A~~lA-~~~~~~~~~i~~~~~~~~~  791 (814)
T 3mkq_A          762 SQRFSEAAFLG-STYGLGDNEVNDIVTKWKE  791 (814)
T ss_dssp             TTCHHHHHHHH-HHTTCCHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHH-HHhCCChHHHHHHHHHHHH
Confidence                  55544 4578877555666655543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.67  E-value=32  Score=31.35  Aligned_cols=123  Identities=10%  Similarity=-0.004  Sum_probs=78.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ..+.......|+|-||.++++.+.....+  -..+...+.....-+..+.+.|++.-|.+++...++++++.--+...  
T Consensus        17 l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~--~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~--   92 (312)
T 2wpv_A           17 LQRFENKIKAGDYYEAHQTLRTIANRYVR--SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD--   92 (312)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH--
T ss_pred             HHHHHHHhhccChHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH--
Confidence            33344455779999999998887665422  12344566777778888888999999999999999999875333332  


Q ss_pred             HHHHhhhhhHhhhcCC-hHHHHHHHHHHHHhhccccCC--CCchHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRITHGT--NSPFMKELILK  351 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~-~~eA~~~l~kAl~i~~~~~G~--~hp~~~~l~~~  351 (368)
                       ....+|..+...... -.+-.+++.+|+......-|.  .||....+...
T Consensus        93 -~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~  142 (312)
T 2wpv_A           93 -ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS  142 (312)
T ss_dssp             -HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence             244455555544221 223466788888777655332  37765555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=80.53  E-value=9.1  Score=30.08  Aligned_cols=40  Identities=18%  Similarity=0.071  Sum_probs=30.9

Q ss_pred             cccCCccc-cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          252 KLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       252 ~~l~~~h~-~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      .++..+++ .--..++.||..+.++|+|.+|.+++..++++
T Consensus        63 ~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           63 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34444334 44567888999999999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d2h2ja2	261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	7e-06
d2f69a2	171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	6e-05

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 36  DIDEKQLLLYAQIANLVNLILQWPEISINEIA--ENFSKLACNAHTICNSELRPLGTGLY 93
                +  +  +   L   I+   +    +    ++F        +   S LR     + 
Sbjct: 127 TTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVV 186

Query: 94  PVISIINHSCLPNAVLVF-----------EGRLAVVRAVQHVPKGAEVLISY 134
           P+  +INHS                       L  +++   V  G +V I Y
Sbjct: 187 PMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 7/117 (5%)

Query: 54  LILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLY--PVISIINHSCLPNA---- 107
           + +   E+   + A N + L+ +  T+ +          Y   +    NHS  PN     
Sbjct: 55  VRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDM 114

Query: 108 -VLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIK 163
            V    G +  +R ++ V    E+ ++Y               E Y       +  +
Sbjct: 115 FVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQ 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.39
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.12
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	99.11
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	98.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.83
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.81
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.8
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.71
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.55
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	98.48
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.3
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.27
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.23
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.15
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.12
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.9
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.87
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.83
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.42
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.16
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.09
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.04
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.83
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.79
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.5
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.03
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.85
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.58
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	91.42
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	90.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.8
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	88.89
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.48
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	88.14
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	87.72
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	82.76
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	82.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	82.21
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	81.37
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	80.1

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.39  E-value=6.2e-14  Score=125.95  Aligned_cols=88  Identities=20%  Similarity=0.186  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHhhhhccccccccCCCCceeEEEccccccccCCCccCcEEEEeC-----------CEEEEEEccCCCCCC
Q 017649           60 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEG-----------RLAVVRAVQHVPKGA  128 (368)
Q Consensus        60 ~~~~~~~~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~nHsC~PN~~~~~~~-----------~~~~~~a~~~i~~ge  128 (368)
                      .++.+.....++.+.+++|.+.+    +.|.++||.++++||||.||+...+++           ..++|+|+|+|++||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~----~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GE  232 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  232 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC-------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTS
T ss_pred             ccCHHHHHHHHHHhhcccccccc----cccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCC
Confidence            46778888888989999997643    468899999999999999999887753           468999999999999


Q ss_pred             eeEEeccCCCCCHHHHHHHHhcCCCeEe
Q 017649          129 EVLISYIETAGSTMTRQKALKEQYLFTC  156 (368)
Q Consensus       129 el~~~Y~~~~~~~~~R~~~L~~~~~F~C  156 (368)
                      ||||||+... +.    ..|...|||.+
T Consensus       233 EI~isYG~~~-~n----~~ll~~yGFv~  255 (261)
T d2h2ja2         233 QVYIQYDLNK-SN----AELALDYGFIE  255 (261)
T ss_dssp             BCEECSCSSC-CH----HHHHHHSSCCC
T ss_pred             EEEEecCCCC-CH----HHHHHhCCCCC
Confidence            9999998543 22    34666899976

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.12  E-value=1.3e-09  Score=89.48  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=108.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC----ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhh---
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP----FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV---  295 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~----~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~---  295 (368)
                      ....+...+..|+|++|+..|++++.+.......    ++.....++.+++.+|..+|+|++|+..+.+++..+.+.   
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            4455777788999999999999999986553211    123345678899999999999999999999999988765   


Q ss_pred             cCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHHH
Q 017649          296 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  359 (368)
Q Consensus       296 ~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~el  359 (368)
                      .+..++.....++++|.++..+|++++|+..|++|+++.....| ..+....++..+.+....|
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHc
Confidence            34556777888999999999999999999999999999887765 4456666676666665554

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=99.11  E-value=1.8e-11  Score=96.63  Aligned_cols=51  Identities=24%  Similarity=0.170  Sum_probs=43.6

Q ss_pred             EEEccccccccCCCccCcEEEEe--CCEEEEEEccCCCCCCeeEEeccCCCCC
Q 017649           90 TGLYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEVLISYIETAGS  140 (368)
Q Consensus        90 ~~lyp~~s~~nHsC~PN~~~~~~--~~~~~~~a~~~i~~geel~~~Y~~~~~~  140 (368)
                      .-..+.++++||||.|||...+.  +..+.++|+|+|++||||+++|++.+|.
T Consensus        59 ~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dYg~~yw~  111 (119)
T d2g46a1          59 AMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWL  111 (119)
T ss_dssp             EECCSTTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCCCSSSCC
T ss_pred             ceecCCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEecChhHhc
Confidence            33456678999999999998776  4578999999999999999999988774

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.8e-08  Score=78.47  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ....+.+..++..|+|++|+..|.+++.+     +|.+   ..++.+++.+|..+|+|++|++.+.+++++... .+..+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~   75 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHH
Confidence            34456677788999999999999999875     4444   457889999999999999999999999987654 56678


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +.++..+..+|.++..++++++|+.++.+|+..
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            889999999999999999999999999999863

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=98.87  E-value=5.4e-10  Score=101.30  Aligned_cols=63  Identities=25%  Similarity=0.469  Sum_probs=34.9

Q ss_pred             cccccCCCccCcEEEE--eC------CEEEEEEccCCCCCCeeEEeccCCCCCH-HHHHHHHhcCCCeEeec
Q 017649           96 ISIINHSCLPNAVLVF--EG------RLAVVRAVQHVPKGAEVLISYIETAGST-MTRQKALKEQYLFTCTC  158 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~~--~~------~~~~~~a~~~i~~geel~~~Y~~~~~~~-~~R~~~L~~~~~F~C~C  158 (368)
                      +.++||||.||+.+..  .+      .++.++|+|+|++|||||++|.+..++. .+.....+....|.|.|
T Consensus       213 aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         213 TRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             hheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceeeC
Confidence            5688999999997643  22      3688999999999999999999876543 33334445456788887

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.5e-08  Score=77.52  Aligned_cols=112  Identities=21%  Similarity=0.178  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      +..+.+++..+...|++++|+..|.+++..     .|.   -..++.++|.+|..+|++++|+..+.+++...     |.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~   69 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----PD   69 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc---chhhhhcccccccccccccccchhhhhHHHhc-----cc
Confidence            455677888899999999999999999864     233   35578899999999999999999999999643     34


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ++   ..++++|.++..+|++++|+..+++|+++     -|++|.+..-+..+
T Consensus        70 ~~---~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~l  114 (117)
T d1elwa_          70 WG---KGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEGLQNM  114 (117)
T ss_dssp             CH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH
T ss_pred             hh---hHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            44   46899999999999999999999999963     46776655544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-08  Score=80.10  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  297 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g  297 (368)
                      +++..+..++..++..|+|++|+..|++++.+     .|.   -..++.+++.++..+|++++|+..++++++.-     
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-----   74 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   74 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc-----chh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-----
Confidence            45566778888999999999999999999875     333   45667899999999999999999999999752     


Q ss_pred             CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHH
Q 017649          298 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  350 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~  350 (368)
                         |.....++.+|.++..+|++++|+..+++|+.+     .|+++.....+.
T Consensus        75 ---p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~~~~~l~  119 (159)
T d1a17a_          75 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQ  119 (159)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHH
T ss_pred             ---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHH
Confidence               444466899999999999999999999999875     566666554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=4.7e-08  Score=82.04  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      +.+.+.+..++..|+|++|+..|.+++.+     .|.+   ..++.++|.+|..+|+|++|+.++.+++.+        .
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------C
Confidence            45667778889999999999999998875     2443   567889999999999999999999999864        3


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      |.....++++|.++..+|++++|+..|++|+.+-..
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            444567899999999999999999999999987543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.82  E-value=1e-07  Score=77.60  Aligned_cols=120  Identities=11%  Similarity=0.055  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc--------cccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 017649          217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------SVNLMQTREKLIKILMELEDWKEALAYCQLT  288 (368)
Q Consensus       217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~--------h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~  288 (368)
                      ..++..+.+.+..++..|+|.+|+..|.+++..........        ....+.++.+++.+|..+|+|.+|++++.++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            35566677788889999999999999999987653322211        1123457788999999999999999999999


Q ss_pred             hhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHH
Q 017649          289 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  349 (368)
Q Consensus       289 l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~  349 (368)
                      +..        +|.-...++++|.++..+|++++|+..|++|+++     .|+++.+...+
T Consensus        94 l~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~n~~~~~~l  141 (153)
T d2fbna1          94 LKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSY  141 (153)
T ss_dssp             HHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred             ccc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            863        3444568999999999999999999999999987     46776554433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.81  E-value=8e-08  Score=79.43  Aligned_cols=121  Identities=15%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC-------ccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 017649          218 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP-------FSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  290 (368)
Q Consensus       218 ~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~-------~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~  290 (368)
                      ..+..+.+.+..++..|+|.+|+..|.+++.........       .+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            456677788889999999999999999998765332221       2334556778899999999999999999999986


Q ss_pred             hHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          291 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       291 ~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      .        +|.-...++++|.++..+|++++|+..|.+|+.+     .|+++.....+..
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~  140 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARLQIFM  140 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence            4        3444577899999999999999999999999874     4666655444333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.3e-07  Score=78.41  Aligned_cols=123  Identities=12%  Similarity=0.113  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-------cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 017649          217 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-------SVNLMQTREKLIKILMELEDWKEALAYCQLTI  289 (368)
Q Consensus       217 ~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~-------h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l  289 (368)
                      +..+..+.+.+..++..|++++|+..|.+++..........       +.....++.+++.+|..+|+|++|+.++.+++
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            34566677888889999999999999999988643221111       22344567789999999999999999999999


Q ss_pred             hhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHH
Q 017649          290 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  352 (368)
Q Consensus       290 ~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L  352 (368)
                      ..     -|.+   ...++.+|.++..+|++++|+..|++|+++     .|+++.+...+..+
T Consensus        90 ~~-----~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          90 EL-----DSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQLAVC  139 (170)
T ss_dssp             HH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHH
T ss_pred             hc-----cccc---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            75     2344   456899999999999999999999999985     57787766555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.71  E-value=1.6e-07  Score=77.38  Aligned_cols=125  Identities=14%  Similarity=0.163  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc--------cCCccccHHHHHHHHHHHHHhhhhHHHHHHHH
Q 017649          214 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAYC  285 (368)
Q Consensus       214 ~~~~~~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~--------l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~  285 (368)
                      ..+......+...+..+...|++.+|+..|.+++......        ....++....++.+++.++..+|+|++|+..+
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  100 (169)
T d1ihga1          21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence            3444445556667777889999999999998887643211        11224556678889999999999999999999


Q ss_pred             HhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          286 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       286 ~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      .++++.        +|.-...++.+|.++..+|++++|+..|++|+++     .|+++.+...+..
T Consensus       101 ~~al~~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~~~~~l~~  153 (169)
T d1ihga1         101 LEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLK  153 (169)
T ss_dssp             HHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred             hhhhhh--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence            999864        2344467899999999999999999999999985     4566554443333

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.8e-09  Score=86.74  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=35.3

Q ss_pred             ccccccCCCccCcEEEE--e---CCEEEEEEccCCCCCCeeEEeccCCC
Q 017649           95 VISIINHSCLPNAVLVF--E---GRLAVVRAVQHVPKGAEVLISYIETA  138 (368)
Q Consensus        95 ~~s~~nHsC~PN~~~~~--~---~~~~~~~a~~~i~~geel~~~Y~~~~  138 (368)
                      .+.++||||.|||....  .   +..+.++|+|+|++|||||++|+...
T Consensus        98 ~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dYG~~~  146 (171)
T d2f69a2          98 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  146 (171)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCS
T ss_pred             cceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEeCCCC
Confidence            35689999999997532  2   24678999999999999999998543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4e-07  Score=71.27  Aligned_cols=108  Identities=12%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh---hhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          227 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       227 a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~---~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      +..+.+.+++++|++.|++++.+        ++....++.++|.+++.   .+++.+|+.++++++..      ...|..
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~   71 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchH
Confidence            34556677899999999998875        33445678899999975   56777888887776641      122445


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  353 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~  353 (368)
                      ...+++||.++..+|++++|++++++|+++     .|+|+....+...+.
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHHHHHHHHHHH
Confidence            568899999999999999999999999985     488887766665543

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.48  E-value=4.2e-08  Score=87.67  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=34.2

Q ss_pred             cccccCCCccCcEEE--EeC------CEEEEEEccCCCCCCeeEEeccCC
Q 017649           96 ISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIET  137 (368)
Q Consensus        96 ~s~~nHsC~PN~~~~--~~~------~~~~~~a~~~i~~geel~~~Y~~~  137 (368)
                      +.++||||.||+.+.  +.+      ..+.|.|+|+|++|||||++|++.
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~  262 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA  262 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTT
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCC
Confidence            347799999999763  322      258899999999999999999864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.43  E-value=5.9e-07  Score=68.88  Aligned_cols=92  Identities=12%  Similarity=-0.027  Sum_probs=76.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ++.+..+...|++.+|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++.+        +|.-
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~   83 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKD   83 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccc-----cccc---chhhhhhhhhhhhhhhHHHhhccccccccc--------cccc
Confidence            34556677899999999999998765     3444   567788999999999999999999999874        3444


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAV  331 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl  331 (368)
                      ...++.||.++..+|++++|++.+++.+
T Consensus        84 ~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5678999999999999999999999875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.6e-06  Score=75.23  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  299 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~  299 (368)
                      .......+..+...|++++|+..+++++.+     .|++   ..++.++|.+|..+|++++|++.+++++..-     |.
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~  103 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----PT  103 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-----hh
Confidence            445667788888999999999999999875     3444   4568899999999999999999999999742     33


Q ss_pred             ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          300 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       300 hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +   ...++++|.++..+|++++|++.+++|+++
T Consensus       104 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         104 Y---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             C---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             h---hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3   356889999999999999999999999876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=2.6e-06  Score=71.02  Aligned_cols=125  Identities=7%  Similarity=-0.003  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc--------------cccHHHHHHHHHHHHHhhhhHHHHHHH
Q 017649          219 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------------SVNLMQTREKLIKILMELEDWKEALAY  284 (368)
Q Consensus       219 ~~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~--------------h~~l~~~~~~La~~~~~~g~~~~Al~~  284 (368)
                      .++.+.+.+......|++++|+..|.+++.+...-+-+.              ....+.+..+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            455666777778899999999999999988754321111              122446778899999999999999999


Q ss_pred             HHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC-CchHHHHHHH
Q 017649          285 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILK  351 (368)
Q Consensus       285 ~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~-hp~~~~l~~~  351 (368)
                      +++++..        +|.--..+..++.++..+|++.+|+..|+++.+.+...+|-+ .|.+..+...
T Consensus        90 ~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~  149 (179)
T d2ff4a2          90 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  149 (179)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            9999873        344446678899999999999999999999999999999987 4445554433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.3e-06  Score=62.54  Aligned_cols=87  Identities=9%  Similarity=-0.073  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCc
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  343 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp  343 (368)
                      ....++.++...|+|.+|+.++++++..... .+..++..+..+.+||.++..+|++++|+.++++|+++     -|+|+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~~~   80 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcCCH
Confidence            3457899999999999999999999987764 34556678899999999999999999999999999986     47776


Q ss_pred             hHHHHHHHHHHHHHHH
Q 017649          344 FMKELILKLEEAQAEA  359 (368)
Q Consensus       344 ~~~~l~~~L~~~~~el  359 (368)
                      .   ...++...++.+
T Consensus        81 ~---a~~Nl~~~~~~l   93 (95)
T d1tjca_          81 R---ANGNLKYFEYIM   93 (95)
T ss_dssp             H---HHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHh
Confidence            4   455555555544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=8.8e-06  Score=72.48  Aligned_cols=127  Identities=13%  Similarity=-0.000  Sum_probs=100.0

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...++|++|++.|.++..+....  .+++..+.++.+++.+|..+|++++|+++++++++++...  ......+
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~  117 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGA  117 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHH
Confidence            34455668889999999999999886553  3355678899999999999999999999999999998765  4555567


Q ss_pred             HHHhhhhhHhhh-cCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  357 (368)
Q Consensus       305 ~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~  357 (368)
                      ..+.++|.++.. .|++++|+.++++|+++....  .+.+....+..++..+..
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~  169 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKA  169 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHH
Confidence            788899998854 699999999999999988765  233445556666665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-06  Score=72.41  Aligned_cols=96  Identities=17%  Similarity=0.145  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      -.+++++......|+|++|++.+.+       + .+.++   .+..+++.+|..+|++++|++.+.++++.        .
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~-------i-~~~~~---~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------d   66 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSA-------V-QDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINR--------D   66 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT-------S-SSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh-------c-CCCCH---HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------h
Confidence            3566778888899999999887753       2 23343   46789999999999999999999999974        2


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      |..+..++++|.++..+|++++|++.+++|+....
T Consensus        67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            44467889999999999999999999999997543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.7e-06  Score=73.95  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=87.3

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      ..+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+++++++++.     -|.+   +
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~  240 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSV-----RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL-----QPGY---I  240 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---H
T ss_pred             hhHHHHHHHHHHhhhhccccccccc-----cccc---ccchhhhhhcccccccchhHHHHHHHHHHH-----hhcc---H
Confidence            3455567889999999999988754     2333   456788999999999999999999999874     2344   4


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCC---CchHHHHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKLEEAQAEA  359 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~---hp~~~~l~~~L~~~~~el  359 (368)
                      ..++++|.++..+|++++|+..|++|+++.....++.   ......+...+..+...+
T Consensus       241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~  298 (323)
T d1fcha_         241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML  298 (323)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHc
Confidence            5688999999999999999999999999877655543   333344444454444433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.1e-05  Score=69.57  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=102.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~-h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      .|......|++++|+..+++++...    +.+ ......++..++.++...|++++|+.++++++......  +.++..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~   91 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYAL   91 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHHH
Confidence            4666789999999999999987642    222 23345678889999999999999999999999887653  5677788


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHH
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  356 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~  356 (368)
                      ..+..++.++...|++.+|...+.+|+.+.....++.++....+...+..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  143 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  143 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999988888877666655554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-05  Score=66.51  Aligned_cols=113  Identities=10%  Similarity=-0.005  Sum_probs=86.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH-------hh
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ-------RV  295 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e-------~~  295 (368)
                      ..+.+..+...|++++|++.|++++++        ++....+..+++.++..+|++++|+..+++++...+       ..
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            456777788999999999999999875        234466788999999999999999999999986432       11


Q ss_pred             cC-CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHH
Q 017649          296 YP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  346 (368)
Q Consensus       296 ~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~  346 (368)
                      .| .....-+-.++++|.++..+|++++|+..+.+|+.+-.   .++|....
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~---~~~~~~~~  159 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS---EPRHSKID  159 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---SGGGGHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CcchHHHH
Confidence            22 22223356788999999999999999999999987543   34555443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-05  Score=72.63  Aligned_cols=109  Identities=18%  Similarity=0.201  Sum_probs=73.2

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHH
Q 017649          226 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  305 (368)
Q Consensus       226 ~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~  305 (368)
                      .+..+...|++.+|++.++.+...     .|   ........++.++...|++++|+++++++++.        +|..+.
T Consensus       277 l~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~  340 (388)
T d1w3ba_         277 LANALKEKGSVAEAEDCYNTALRL-----CP---THADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA  340 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhcc-----CC---ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence            344455556666666666555432     12   22345566777888888888888888887753        344456


Q ss_pred             HHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHHHHHHHHHHHH
Q 017649          306 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  358 (368)
Q Consensus       306 ~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~L~~~~~e  358 (368)
                      .++++|.++..+|++++|+..+++|+++     -|+++   +....|..+..+
T Consensus       341 ~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~---~a~~~lg~~~~~  385 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA---DAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTTCH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH
Confidence            7889999999999999999999999875     34554   344555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=7.6e-05  Score=66.12  Aligned_cols=114  Identities=16%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-hhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~-~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      .+.+.+..+...|++++|++.+++++.+....  ........+...++.+|.. .|++++|++++++++++++..  ...
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~  154 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSV  154 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence            44555666778899999999999998876543  2344556778889988854 699999999999999988754  445


Q ss_pred             hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649          301 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  339 (368)
Q Consensus       301 p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G  339 (368)
                      +..+..+.++|.++..+|++++|+..++++..+......
T Consensus       155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            667888999999999999999999999999987765533

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.2e-05  Score=72.38  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHH
Q 017649          225 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  304 (368)
Q Consensus       225 ~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~  304 (368)
                      +.|......|++++|++.++++++.     .|.++   .++..++.+|..+|++++|+.+++++++.        +|...
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~   67 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ-----EPDNT---GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLA   67 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            3456677889999999999998764     35554   45678999999999999999999999864        23334


Q ss_pred             HHHhhhhhHhhhcCChHHHHHHHHHHHHhh
Q 017649          305 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       305 ~~l~~La~l~~~~g~~~eA~~~l~kAl~i~  334 (368)
                      ..++.+|.++..+|++++|+..+.++....
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~   97 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK   97 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhccccccccccccccccc
Confidence            678899999999999999999999988743

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3e-05  Score=69.04  Aligned_cols=96  Identities=10%  Similarity=-0.043  Sum_probs=79.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          224 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       224 ~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      ++.+..+...|++++|+..++++++.     .|.+   ..++..++.++...|++++|+.++.++++..     |.+   
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---   86 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKH---MEAWQYLGTTQAENEQELLAISALRRCLELK-----PDN---   86 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHhhhccc-----ccc---
Confidence            45566778999999999999998753     3444   5678889999999999999999999998742     333   


Q ss_pred             HHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          304 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                      ...++.+|.++...|++++|+..+.+++.+..
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             ccccccccccccccccccccccchhhHHHhcc
Confidence            45678899999999999999999999987543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=0.00022  Score=62.72  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=99.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCCh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  301 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp  301 (368)
                      .+...+..+...|++++|+..+++++.+...  .+..+..+.+...++.++...|++..|...+.+++.......++.++
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~  130 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  130 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh
Confidence            3444566677889999999999999887543  24456677888899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccC
Q 017649          302 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  339 (368)
Q Consensus       302 ~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G  339 (368)
                      ..+..+..+|.++...|++++|...+.++.........
T Consensus       131 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_         131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999999988776533

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=7.5e-05  Score=54.86  Aligned_cols=83  Identities=7%  Similarity=-0.083  Sum_probs=64.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      .++.+..+..+|++.+|+..+++++++.... ....+....++.+|+.++..+|++++|++++++++++     -|+|+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~~~~   81 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcCCHH
Confidence            3456667789999999999999998875432 2334567789999999999999999999999999975     367764


Q ss_pred             HHHHHhhhhhHh
Q 017649          303 LGLQYYTCGKLE  314 (368)
Q Consensus       303 ~~~~l~~La~l~  314 (368)
                         .+.+++.+.
T Consensus        82 ---a~~Nl~~~~   90 (95)
T d1tjca_          82 ---ANGNLKYFE   90 (95)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHHHH
Confidence               455555444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.70  E-value=0.00012  Score=58.59  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=69.0

Q ss_pred             HHHHHH--HHHHHhhhhHHHHHHHHHhhhhhHHhhcCC----CChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          263 QTREKL--IKILMELEDWKEALAYCQLTIPVYQRVYPQ----FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       263 ~~~~~L--a~~~~~~g~~~~Al~~~~~~l~~~e~~~g~----~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      .+...+  +..+...|+|++|+..+++++++.+.....    .++..+..+.++|.++..+|++++|+..+.+|+.+...
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            344444  556778899999999999999988765331    24456788999999999999999999999999998876


Q ss_pred             ccC---CCCchHHHHHHHHHHHH
Q 017649          337 THG---TNSPFMKELILKLEEAQ  356 (368)
Q Consensus       337 ~~G---~~hp~~~~l~~~L~~~~  356 (368)
                      ...   ..++........+..+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~  110 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALAL  110 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHH
Confidence            533   33444444444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00024  Score=54.88  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCch
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  344 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~  344 (368)
                      ..+++..+...|+|++|+.++.++++.        +|.-...++++|.++..+|++++|+..+.+|+++-....+ .++.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~~   77 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYRQ   77 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH-HHHH
Confidence            456888999999999999999999975        2333457899999999999999999999999987555433 2333


Q ss_pred             HHHHHHHHHHH
Q 017649          345 MKELILKLEEA  355 (368)
Q Consensus       345 ~~~l~~~L~~~  355 (368)
                      ...+...+..+
T Consensus        78 ~a~~~~~lg~~   88 (128)
T d1elra_          78 IAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333334333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=0.00031  Score=55.65  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhh----------hhHHHHHHHHHhhhhhHHhhcCCCChHH
Q 017649          234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----------EDWKEALAYCQLTIPVYQRVYPQFHPLL  303 (368)
Q Consensus       234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~----------g~~~~Al~~~~~~l~~~e~~~g~~hp~~  303 (368)
                      +.|++|+..+++++.+     .|+++   .++.+++.++..+          +.+++|+..+++++++        .|.-
T Consensus        11 ~~fe~A~~~~e~al~~-----~P~~~---~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------~P~~   74 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKS-----NPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             ccHHHHHHHHHHHHhh-----CCcch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------cchh
Confidence            3578888888888764     35555   4566778777654          4456677777777653        2333


Q ss_pred             HHHHhhhhhHhhhcCC-----------hHHHHHHHHHHHHhhccccCCCCchHHHHHHH
Q 017649          304 GLQYYTCGKLEWFLGD-----------TENAIKSMTEAVEILRITHGTNSPFMKELILK  351 (368)
Q Consensus       304 ~~~l~~La~l~~~~g~-----------~~eA~~~l~kAl~i~~~~~G~~hp~~~~l~~~  351 (368)
                      ...++++|.++..+|+           +++|...|++|++     .-|+++.+...+..
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-----l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-----EQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-----cCCCHHHHHHHHHH
Confidence            4567788888876653           3555555666654     34677777655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.0003  Score=60.04  Aligned_cols=68  Identities=12%  Similarity=-0.021  Sum_probs=58.5

Q ss_pred             cccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          258 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       258 h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...-..++..++.+|..+|+|++|+..+++++.+     -|++|   ..++++|.++..+|++++|+..+++|+++
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCCH---HHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            3445677889999999999999999999999974     24444   45889999999999999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00029  Score=57.88  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          264 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       264 ~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .+-..+..+...|+|++|+.++.+++..-        |..+..+.++|.++..+|++++|+..+.+|+++
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            34567889999999999999999999752        344577899999999999999999999999865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.16  E-value=0.0012  Score=49.47  Aligned_cols=78  Identities=10%  Similarity=-0.024  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchH
Q 017649          266 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  345 (368)
Q Consensus       266 ~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~  345 (368)
                      ..++..+...|++.+|+..+++++...     |.+   ...++.+|.++...|++++|+..+++|+++     .|+++  
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~--   84 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKE-----PER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI--   84 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccc-----ccc---chhhhhhhhhhhhhhhHHHhhccccccccc-----ccccc--
Confidence            467888999999999999999998642     334   477899999999999999999999999986     34444  


Q ss_pred             HHHHHHHHHHHHHH
Q 017649          346 KELILKLEEAQAEA  359 (368)
Q Consensus       346 ~~l~~~L~~~~~el  359 (368)
                       +....|..+....
T Consensus        85 -~a~~~la~~y~~~   97 (112)
T d1hxia_          85 -AVHAALAVSHTNE   97 (112)
T ss_dssp             -HHHHHHHHHHHHH
T ss_pred             -cchHHHHHHHHHC
Confidence             3444454444433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0015  Score=58.31  Aligned_cols=65  Identities=8%  Similarity=-0.087  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          261 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       261 l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..+++.++..+|++++|++++.+++..        +|.-...++++|.++..+|++++|+..+.+|+++
T Consensus       111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             hhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3445555566666666666666666665542        2223355666677777777777777777777664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0017  Score=51.56  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          266 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       266 ~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ...+..|...|+|++|+.++++++..        +|.-...++++|.++..+|++++|+..+++|+++
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL   73 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence            34577888999999999999999974        3555678899999999999999999999999986

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0012  Score=58.99  Aligned_cols=87  Identities=13%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh-hHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  309 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g-~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~  309 (368)
                      ..++++++|++.+.+++.+        +|.-..+..+.+.++..+| ++++|+.++.+++..        +|.-...+++
T Consensus        54 ~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~  117 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHH  117 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHH
Confidence            3455666677666666653        2223344555666666654 366676666666653        2333445566


Q ss_pred             hhhHhhhcCChHHHHHHHHHHHHh
Q 017649          310 CGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       310 La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      +|.++..+|++++|+..+.+|+++
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhh
Confidence            666666667777777766666655

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.83  E-value=0.0038  Score=50.08  Aligned_cols=71  Identities=8%  Similarity=0.052  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCC-------ChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~-------hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ......+..+...|+|.+|+.++.+++...+..++..       .+.....+.++|.++..+|++.+|+..+.+|+.+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            3455678888999999999999999998876655532       2335567778999999999999999999999976

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0013  Score=62.84  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=60.4

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhh
Q 017649          231 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  310 (368)
Q Consensus       231 ~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~L  310 (368)
                      ...|++++|+..+.+++...          ..++..+|+.++...|+|++|+.++++++..        .|..|..+++|
T Consensus       131 ~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~L  192 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQL  192 (497)
T ss_dssp             ------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHH
Confidence            34455555555554443321          2356778999999999999999999999975        47778889999


Q ss_pred             hhHhhhcCChHHHHHHHHHHHHh
Q 017649          311 GKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      |.++...|+..+|+.+|.||+.+
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Confidence            99999999999999999999854

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.002  Score=48.57  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          266 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       266 ~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ..-+..+...|+|++|+.++.+++..        .|.-...+.++|.++..+|++++|+..+.+|+.+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh
Confidence            34678889999999999999999863        2444567899999999999999999999999975

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0048  Score=49.67  Aligned_cols=71  Identities=14%  Similarity=0.045  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC-------hHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHh
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      ......+..+...|+|++|+..+++++..+....+..+       +.....+.++|.++..+|++++|+.++.+|+.+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            34456788899999999999999999987665444333       334556778999999999999999999999986

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.76  E-value=0.0047  Score=53.81  Aligned_cols=100  Identities=15%  Similarity=0.001  Sum_probs=68.5

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHH--------------
Q 017649          228 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ--------------  293 (368)
Q Consensus       228 ~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e--------------  293 (368)
                      .....+|++++|+..+++.++.        +|.-...+..|+.+|...|+|++|+..++++++...              
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3456889999999999988764        334455688999999999999999988887664310              


Q ss_pred             ------hhc-C------CCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhc
Q 017649          294 ------RVY-P------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  335 (368)
Q Consensus       294 ------~~~-g------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~  335 (368)
                            ..+ +      ..+|.-...+...+.++...|+.++|...+.+|.+..-
T Consensus        76 a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence                  000 0      12233334444556666677888888888887776543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.28  E-value=0.0082  Score=47.92  Aligned_cols=84  Identities=10%  Similarity=0.028  Sum_probs=60.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChH
Q 017649          223 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  302 (368)
Q Consensus       223 l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~  302 (368)
                      ..+.+..+...|++++|+..+.+++++     .|.+   ..++..++.+|..+|++++|++.+++++++     .|.++.
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~-----~p~~---~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~  146 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEI-----DPSN---TKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKA  146 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhh-----hhhh---hhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH
Confidence            345566777889999999999998754     3444   466889999999999999999999999974     345555


Q ss_pred             HHHHHhhhhhHhhhcCChHH
Q 017649          303 LGLQYYTCGKLEWFLGDTEN  322 (368)
Q Consensus       303 ~~~~l~~La~l~~~~g~~~e  322 (368)
                      +   ...|+.+.....+..+
T Consensus       147 ~---~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         147 I---QAELLKVKQKIKAQKD  163 (169)
T ss_dssp             H---HHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHH
Confidence            4   3344445444444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.99  E-value=0.024  Score=44.44  Aligned_cols=71  Identities=8%  Similarity=-0.083  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCC
Q 017649          221 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  300 (368)
Q Consensus       221 ~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~h  300 (368)
                      ....+.|..+...|++++|+..+.+++.+     +|.+   ..++..++.++..+|+|++|+..+++++.+.     |.+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~-----~p~~---~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~n  134 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNN  134 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccc-----cchh---hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-----CCC
Confidence            34556788888999999999999998864     3444   5688999999999999999999999998753     566


Q ss_pred             hHHH
Q 017649          301 PLLG  304 (368)
Q Consensus       301 p~~~  304 (368)
                      +.+-
T Consensus       135 ~~~~  138 (153)
T d2fbna1         135 LDIR  138 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.057  Score=43.56  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcC-C
Q 017649          220 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-Q  298 (368)
Q Consensus       220 ~~~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g-~  298 (368)
                      +......+..+...|++++|+..+++++..     +|.+   -.++..|+.++..+|++.+|++.+++....+..-+| .
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~-----~P~~---e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFE-----HPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            344556677788999999999999988764     3443   456778999999999999999999999998888788 3


Q ss_pred             CChHH
Q 017649          299 FHPLL  303 (368)
Q Consensus       299 ~hp~~  303 (368)
                      ..|.+
T Consensus       139 P~~~l  143 (179)
T d2ff4a2         139 PGPTL  143 (179)
T ss_dssp             CCHHH
T ss_pred             cCHHH
Confidence            35554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.03  E-value=0.068  Score=40.44  Aligned_cols=81  Identities=15%  Similarity=0.004  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhh---hhHHHHHHHHHhhhhhHHhhcCCCChH-HHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccc
Q 017649          262 MQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  337 (368)
Q Consensus       262 ~~~~~~La~~~~~~---g~~~~Al~~~~~~l~~~e~~~g~~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~  337 (368)
                      .+++-+.|.++...   .++.+++.+++.++..        +|. .--.++.||..+..+|++++|+.++.+++++    
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence            57777888877743   6777888887766531        232 2367899999999999999999999999984    


Q ss_pred             cCCCCchHHHHHHHHHHH
Q 017649          338 HGTNSPFMKELILKLEEA  355 (368)
Q Consensus       338 ~G~~hp~~~~l~~~L~~~  355 (368)
                       -|+|.....+...+++.
T Consensus       103 -eP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1         103 -ERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             -CTTCHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHH
Confidence             68888888877776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.04  Score=41.54  Aligned_cols=65  Identities=9%  Similarity=0.008  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          221 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       221 ~~l~~~a~~~~~~g---~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      +..++.|..+...+   ++++|+.++++++..     .| ++....++.+||.+|..+|+|++|++++++++++
T Consensus        34 ~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-----~~-~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          34 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GS-KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-----cC-CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            34455566555433   455677777765432     12 2334567889999999999999999999999974

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.58  E-value=0.047  Score=47.90  Aligned_cols=86  Identities=8%  Similarity=-0.169  Sum_probs=62.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      ..+..+++...+.+.+...     |.+..   ....++.++...|++.+|+..+.+++        ..+|.....++.+|
T Consensus       220 ~l~~~~~a~~~~~~~l~~~-----~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~p~~~~~~~~l~  283 (334)
T d1dcea1         220 FTDPNDQSAWFYHRWLLGR-----AEPLF---RCELSVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLM  283 (334)
T ss_dssp             HHCSSCSHHHHHHHHHHSC-----CCCSS---SCCCCHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred             HhcchhHHHHHHHHHHHhC-----cchhh---HHHHHHHHHHHHhhHHHHHHHHHHHH--------hhCchHHHHHHHHH
Confidence            3455566766666655432     11111   12245666777889999988877665        46788889999999


Q ss_pred             hHhhhcCChHHHHHHHHHHHHh
Q 017649          312 KLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .++...|++++|++++++|+++
T Consensus       284 ~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         284 RALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999886

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.53  E-value=0.11  Score=45.50  Aligned_cols=85  Identities=9%  Similarity=0.025  Sum_probs=54.2

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhh--hHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhh
Q 017649          234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  311 (368)
Q Consensus       234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g--~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La  311 (368)
                      |.+.+|+..+++++..     +|.   -..+...++.++...+  ++++|+..+.+++..    .|..++   ...+.+|
T Consensus        87 ~~~~~al~~~~~~l~~-----~pk---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~---~~~~~~~  151 (334)
T d1dcea1          87 ALVKAELGFLESCLRV-----NPK---SYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFH---CWDYRRF  151 (334)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-----CCC---cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----Cchhhh---hhhhHHH
Confidence            3455666666665543     333   3344566666666554  588888888888764    233222   2345667


Q ss_pred             hHhhhcCChHHHHHHHHHHHHh
Q 017649          312 KLEWFLGDTENAIKSMTEAVEI  333 (368)
Q Consensus       312 ~l~~~~g~~~eA~~~l~kAl~i  333 (368)
                      .++...+.+++|+..+++++.+
T Consensus       152 ~~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         152 VAAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             HHHHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHHhccccHHHHHHHHHHHHc
Confidence            8888888899998888887764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.58  Score=43.44  Aligned_cols=62  Identities=16%  Similarity=0.069  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  291 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~  291 (368)
                      .+...+..+...|++++|+..|++++.+        +|....++++||.++...|++.+|+.++.+++.+
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            3455566677889999999999998875        3445567899999999999999999999998853

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.48  E-value=0.24  Score=42.36  Aligned_cols=64  Identities=14%  Similarity=0.003  Sum_probs=50.7

Q ss_pred             HHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHHhhccccCCCCchHHHH
Q 017649          272 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL  348 (368)
Q Consensus       272 ~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~i~~~~~G~~hp~~~~l  348 (368)
                      .+..|++++|+..++++++        .+|.-...+..||.++...|++++|+..|++++++     .|+++.....
T Consensus         6 aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~~~~~~   69 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQ   69 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHHHH
Confidence            4567999999999999886        34555567899999999999999999999999875     3555544433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.42  E-value=0.33  Score=37.11  Aligned_cols=49  Identities=10%  Similarity=0.058  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhh-----------HHHHHHHHHhhhh
Q 017649          234 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-----------WKEALAYCQLTIP  290 (368)
Q Consensus       234 g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~-----------~~~Al~~~~~~l~  290 (368)
                      +.+++|+..+++++++     .|.+   ..++.+++.+|..+|+           |.+|.++++++++
T Consensus        55 ~~~~~Ai~~~~kAl~l-----~P~~---~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          55 QMIQEAITKFEEALLI-----DPKK---DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-----cchh---hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            3567788888887764     3444   4567889999987764           4566666666664

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=90.09  E-value=1.1  Score=37.05  Aligned_cols=62  Identities=10%  Similarity=0.001  Sum_probs=49.5

Q ss_pred             hhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHhhcc
Q 017649          275 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       275 ~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~~~  336 (368)
                      .|.-++|...++++.++...-++|.||.+.....|.+..+.. +++.++|.+..++|.+.+..
T Consensus       136 ~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde  198 (220)
T d2o8pa1         136 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL  198 (220)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            355678999999999998888999999987777777777654 78899999998888544443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.80  E-value=0.54  Score=35.24  Aligned_cols=70  Identities=11%  Similarity=-0.058  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhhc---CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCC
Q 017649          222 ILSKKTLALTSC---GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  298 (368)
Q Consensus       222 ~l~~~a~~~~~~---g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~  298 (368)
                      +.++-|..+...   .+..+++.+++.+++.     +|.+  ....+..|+.+|..+|+|++|.+++++++++-     |
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~--~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie-----P  104 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESR--RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-----R  104 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGG--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----Cchh--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC-----C
Confidence            344555544433   2456777777766542     2222  34678899999999999999999999998743     5


Q ss_pred             CChHH
Q 017649          299 FHPLL  303 (368)
Q Consensus       299 ~hp~~  303 (368)
                      .|+..
T Consensus       105 ~n~qA  109 (124)
T d2pqrb1         105 NNKQV  109 (124)
T ss_dssp             TCHHH
T ss_pred             CcHHH
Confidence            66654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.89  E-value=0.93  Score=37.71  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhh-hcCChHHHHHHHHHHHHhh
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~kAl~i~  334 (368)
                      ++|...++.++++...-+||.||.+.....|.+..+. ..++.++|...-++|++-.
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~a  199 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEA  199 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4688889999998888899999998777777776665 4799999999988877533

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.48  E-value=1.9  Score=36.55  Aligned_cols=61  Identities=10%  Similarity=0.047  Sum_probs=37.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhhcCChHHHHHHHHHHHH
Q 017649          265 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  332 (368)
Q Consensus       265 ~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~kAl~  332 (368)
                      ....+..+...|++++|...+.+++..     .+.++..  .+..++......|.+++|+..|++|+.
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~-----~~~~~~~--~w~~~~~~~~~~~~~~~ar~i~~~al~  162 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHH-----hcCChHH--HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            445666677778888887777776642     2222222  233445556666777777777777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=88.14  E-value=2.3  Score=31.29  Aligned_cols=80  Identities=15%  Similarity=0.088  Sum_probs=56.6

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHh
Q 017649          233 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  308 (368)
Q Consensus       233 ~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~  308 (368)
                      ..+.++|++.++++.+.       .+   ..+...|+..|..    ..|+.+|+++++++.+.       .+|   ...+
T Consensus        36 ~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~   95 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL-------NS---GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGCL   95 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHHH
T ss_pred             ccCHHHHHHHHhhhhcc-------cc---hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-------Ccc---hHHH
Confidence            34677888877765432       12   3456678888865    35789999999988652       233   4567


Q ss_pred             hhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          309 TCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       309 ~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                      +||.++..    ..+..+|+.+|++|.+
T Consensus        96 ~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          96 ILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            88888865    3578899999999876

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=87.72  E-value=1.2  Score=37.25  Aligned_cols=54  Identities=11%  Similarity=0.081  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHH
Q 017649          279 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVE  332 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~  332 (368)
                      ++|.+.++.+.++...-++|.||.+.....|.+..+.. .++.++|...-++|++
T Consensus       148 ~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         148 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46778888888888888999999987777778777765 5889999998777665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=82.76  E-value=5.8  Score=32.16  Aligned_cols=91  Identities=11%  Similarity=0.018  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----hhhHHHHHHHHHhhhhhHHhhcC
Q 017649          222 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYP  297 (368)
Q Consensus       222 ~l~~~a~~~~~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~----~g~~~~Al~~~~~~l~~~e~~~g  297 (368)
                      .+++.+.....++++++|++.++++.+.     +  +   ..+...|+.+|..    ..++..|..+++.+..       
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-------   66 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDL-----K--E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-------   66 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-------
Confidence            3455556667789999999999987543     1  2   3467778888876    4588888887776543       


Q ss_pred             CCChHHHHHHhhhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          298 QFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       298 ~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                      ..||.   ....||.++..    ......|..++++|..
T Consensus        67 ~~~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~  102 (265)
T d1ouva_          67 LNYSN---GCHLLGNLYYSGQGVSQNTNKALQYYSKACD  102 (265)
T ss_dssp             TTCHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ccccc---hhhccccccccccccchhhHHHHHHHhhhhh
Confidence            23332   23444444432    3556677777776653

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=82.40  E-value=11  Score=30.59  Aligned_cols=56  Identities=20%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             HHHHHHHHhhhhhHHhh--cCCCChHHHHHHhhhhhHhhh-cCChHHHHHHHHHHHHhh
Q 017649          279 KEALAYCQLTIPVYQRV--YPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL  334 (368)
Q Consensus       279 ~~Al~~~~~~l~~~e~~--~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~kAl~i~  334 (368)
                      ++|.+.++.++++.+..  ++|.||.+.....|.+..+.. .++.++|.+.-++|++..
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~  182 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAA  182 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            46778888888888774  569999987777777776664 799999999999888643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=82.21  E-value=1.7  Score=35.72  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHHHHHHhhhhhHhhh----cCChHHHHHHHHHHHH
Q 017649          263 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  332 (368)
Q Consensus       263 ~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~kAl~  332 (368)
                      .+..+|+..+...+|+.+|+++++++.+.     |  ++   ..++.||.++..    ..++..|..+++++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g--~~---~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL-----K--EN---SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--CH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----C--CH---HHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            35678888899999999999999998652     2  32   457889999876    5577888888887654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.37  E-value=12  Score=30.63  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             HHHHHHhhhhhHHhh-cC-CCChHHHHHHhhh-hhHhhhcC----------ChHHHHHHHHHHHHhhccccCCCCchHHH
Q 017649          281 ALAYCQLTIPVYQRV-YP-QFHPLLGLQYYTC-GKLEWFLG----------DTENAIKSMTEAVEILRITHGTNSPFMKE  347 (368)
Q Consensus       281 Al~~~~~~l~~~e~~-~g-~~hp~~~~~l~~L-a~l~~~~g----------~~~eA~~~l~kAl~i~~~~~G~~hp~~~~  347 (368)
                      -..+|..++.+.... .| ..++..-+.++++ |..+....          -.+.|...|++|+++....+.|.||....
T Consensus        90 L~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pirLg  169 (230)
T d2o02a1          90 LRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLG  169 (230)
T ss_dssp             HHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence            345678888877644 44 3455554444444 55554331          12578899999999999999999999988


Q ss_pred             HHHHHHHH
Q 017649          348 LILKLEEA  355 (368)
Q Consensus       348 l~~~L~~~  355 (368)
                      +..+..--
T Consensus       170 L~LN~SVF  177 (230)
T d2o02a1         170 LALNFSVF  177 (230)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhHHHH
Confidence            87665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.10  E-value=5.3  Score=33.55  Aligned_cols=92  Identities=12%  Similarity=0.044  Sum_probs=54.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHhhcCCCChHH-HHHHhhh
Q 017649          232 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTC  310 (368)
Q Consensus       232 ~~g~~~eA~~l~~~~l~~~~~~l~~~h~~l~~~~~~La~~~~~~g~~~~Al~~~~~~l~~~e~~~g~~hp~~-~~~l~~L  310 (368)
                      ..|+.+.|..+++.++..     .|.++   ......+......|++++|..++++++...     +.+|.- ...+...
T Consensus       181 ~~~~~~~a~~i~e~~l~~-----~p~~~---~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~~~~~iw~~~  247 (308)
T d2onda1         181 CSKDKSVAFKIFELGLKK-----YGDIP---EYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARF  247 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHH-----HTTCH---HHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHh-----hhhhH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCChHHHHHHHHHH
Confidence            346677777777776653     12232   334455666677788888877777776422     233321 2223334


Q ss_pred             hhHhhhcCChHHHHHHHHHHHHhhcc
Q 017649          311 GKLEWFLGDTENAIKSMTEAVEILRI  336 (368)
Q Consensus       311 a~l~~~~g~~~eA~~~l~kAl~i~~~  336 (368)
                      .......|+.+.+.+.++++.+++..
T Consensus       248 ~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         248 LAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            44445557888888888777776643