Citrus Sinensis ID: 017651

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHH
Coil and Loop (DISEMBL)
mslrpnaraEVRRNRYKvavdadegrrrrEDNMVEIRKNKREESLLKKRReglqsqqfpppapasnlnlqtkleslpamvagvwsddsslqLEATTQFRKLLsiersppieeviqsgvvprfVEFLMREDYPQLQFEAAWALTniasgtsentkvvidhgAVPIFVKLlaspsddvREQAVWALGnvagdsprcrdLVLSQGALIPLLAQLNERAKLSMLRNATWtlsnfcrgkpqppfdqvrpalpALAQLvhsndeevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellghpspsvlipalrtvgnivtgddfqtqciitygALPYLLGLLTHSHKKSIKKEACWTisnitagnrdQIQVMI
Flexible Loop (DISEMBL)
mslrpnaraevrrnrykvavdadegrrrrednmveirknkreeslLKKRreglqsqqfpppapaSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLlsiersppieeviqsgVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALgnvagdspRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWtisnitagnrdqiqvmi
Low Complexity Region (SEG)
MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFpppapaSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI
Disordered region (IsUnstruct)
*****************************************************************************AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP**PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG*********
Disordered Region (DISOPRED)
*************************************************************************ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI
Disordered Region (DISEMBL)
***********RRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI
Disordered Region (DISPRO)
*****************VAVDADEGRRRREDNMVEIRKNKREESLL*K******************LNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.994	0.695	0.858	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.994	0.694	0.821	1e-178
Q96321	532	Importin subunit alpha-1	no	no	0.994	0.687	0.823	1e-177
Q9SLX0	534	Importin subunit alpha-1b	no	no	1.0	0.689	0.806	1e-173
O04294	531	Importin subunit alpha-2	no	no	1.0	0.693	0.731	1e-156
Q76P29	516	Importin subunit alpha-B	yes	no	0.967	0.689	0.630	1e-130
O94374	539	Importin subunit alpha-2	yes	no	0.964	0.658	0.567	1e-105
O35345	536	Importin subunit alpha-7	yes	no	0.899	0.617	0.590	1e-104
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.899	0.617	0.587	1e-103
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.899	0.617	0.587	1e-102

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/368 (85%), Positives = 339/368 (92%), Gaps = 2/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+ R EVRRNRYKVAVDA+EGRRRREDNMVEIRK++REESLLKKRREGLQ+Q  P 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQA-PV 59

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PA A+   +  KLESLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 60  PASAAT-GVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFV+FL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQA
Sbjct: 119 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVL+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 179 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           Q RPALPALA+L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQVMI 368
           +DQIQ +I
Sbjct: 359 KDQIQAVI 366

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  624 bits (1610), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/369 (82%), Positives = 336/369 (91%), Gaps = 3/369 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGL-QSQQFP 59
           MSLRPN+R E RR+RYKVAVDA+EGRRRREDNMVEIRKNKREE+LLKKRREGL Q+QQFP
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
             A  S+L+   KLE+LP ++AGVWSDDSSLQLE TTQFRKLLSIER+PPIEEVIQSGVV
Sbjct: 61  STAAVSHLD--KKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVV 118

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PRFVEFL R+DYPQLQFEAAWALTNIASGTSENTKVVID+G+VPIF++LL+SPSDDVREQ
Sbjct: 119 PRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQ 178

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGN+AGDSP+ RDLVL  GAL+ LLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F
Sbjct: 179 AVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLF 238

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +Q + ALP L +L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H S
Sbjct: 239 EQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSS 298

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRTVGNIVTGDD QTQ +I + ALP L+ LLT ++KKSIKKEACWTISNITAG
Sbjct: 299 PSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAG 358

Query: 360 NRDQIQVMI 368
           NR+QIQ++I
Sbjct: 359 NRNQIQIVI 367

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  622 bits (1604), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/368 (82%), Positives = 334/368 (90%), Gaps = 2/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRPNA+ EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL+KKRREG+Q+ Q  P
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A A++++   KL+SL  MVAGVWSDD +LQLE+TTQFRKLLSIERSPPIEEVI +GVVP
Sbjct: 61  SASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL +EDYP +QFEAAWALTNIASGTS++TKVVIDH AVPIFV+LLASPSDDVREQA
Sbjct: 119 RFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVL  GAL+PLL QLNE AKLSMLRNATWTLSNFCRGKPQP FD
Sbjct: 179 VWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFD 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QV+PALPAL +L+HS+DEEVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SP
Sbjct: 239 QVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQC+I  GALP L  LLT +HKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQVMI 368
           +DQIQ ++
Sbjct: 359 KDQIQTVV 366

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  607 bits (1564), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/372 (80%), Positives = 329/372 (88%), Gaps = 4/372 (1%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGL----QSQ 56
           MSLRP+ RAEVRR+RYKVAVDADEGRRRREDNMVEIRK++REESLLKKRR+GL     + 
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 57  QFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS 116
               P  A +  LQ KLE LPAMV  V SDDS++QLEATTQFRKLLSIERSPPIEEVI +
Sbjct: 61  AAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINT 120

Query: 117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDV 176
           GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS+NTKVV++ GAVPIFVKLL+SPS+DV
Sbjct: 121 GVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDV 180

Query: 177 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ 236
           REQAVWALGNVAGDSP+CRDLVL+ G L PLL QLNE AKLSMLRNATWTLSNFCRGKPQ
Sbjct: 181 REQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQ 240

Query: 237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296
           P F+QV+PAL AL +L+HS DEEVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL 
Sbjct: 241 PNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300

Query: 297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
           HPS SVLIPALRTVGNIVTGDD QTQC+I + ALP LL LLT++HKKSIKKEACWTISNI
Sbjct: 301 HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNI 360

Query: 357 TAGNRDQIQVMI 368
           TAGNR+QIQ +I
Sbjct: 361 TAGNREQIQAVI 372

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  552 bits (1423), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 270/369 (73%), Positives = 313/369 (84%), Gaps = 1/369 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+A+ EVRRNRYKVAVDA+EGRRRREDN+VEIRKNKREE+L KKR     +     
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 61  PAPASNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                +L+   +L ++LPAMVAG+WS+DS+ QLEAT   RKLLSIE++PPI EV+QSGVV
Sbjct: 61  GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PR V+FL R+D+P+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LL+S S+DVREQ
Sbjct: 121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGNVAGDSP+CRDLVLS GA+ PLL+Q NE  KLSMLRNATWTLSNFCRGKP P F
Sbjct: 181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +Q +PALP L +LV S DEEVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LLGH S
Sbjct: 241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRT+GNIVTGDD QTQ ++   ALP LL LL +++KKSIKKEACWTISNITAG
Sbjct: 301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query: 360 NRDQIQVMI 368
           N DQIQ +I
Sbjct: 361 NADQIQAVI 369

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/365 (63%), Positives = 293/365 (80%), Gaps = 9/365 (2%)

Query: 7   ARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASN 66
           ++ E R+++YK ++D+DE RR+RE+  + IRKNKREESLLKKR     +Q  P   P   
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKR-----TQAVPGSTPVKV 58

Query: 67  LNL-QTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF 125
            +L   +LE LP++VA + S++  L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct: 59  DSLINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
           L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL+SP DDVREQAVWALG
Sbjct: 119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQVR 243
           N+AGDS  CRDLVLS  AL PLL+ L   A  K+SM+RNATWTLSNFCRGKPQPPF+ VR
Sbjct: 179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
            +LP LA+L++  DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELLGHP+ +V 
Sbjct: 239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query: 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363
            PALRT+GNIVTGDD QTQ +++  AL +LL LL  S K++I+KEACWTISNITAG+++Q
Sbjct: 299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQ 357

Query: 364 IQVMI 368
           IQ +I
Sbjct: 358 IQQVI 362

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O94374|IMA2_SCHPO Importin subunit alpha-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=1 SV=1

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/365 (56%), Positives = 257/365 (70%), Gaps = 10/365 (2%)

Query: 12  RRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREG--LQSQ-QFPPPAPASN 66
           RR+R+K      ADE RR+RE+  +EIRK KREESL K+R     LQ+       A  S 
Sbjct: 9   RRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQ 68

Query: 67  LNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF 125
           + ++ ++ +  P + A V SDD  LQL A T+FRK LS E  PPI++VI  GVV RFV+F
Sbjct: 69  VQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQF 128

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
           L  E +  LQFEAAWALTNIASGT++ T++V+D GAVP F++LL+SP  DVREQ VWALG
Sbjct: 129 LESEHHL-LQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALG 187

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAK-LSMLRNATWTLSNFCRGKPQPP-FDQVR 243
           N+AGDS  CRD VL  G L PLL  L   A  +SMLRNATWTLSN CRGK  PP +  + 
Sbjct: 188 NIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTIS 247

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
            A+P LA+L++S D E++ DACWA+SYLSDG N+KI A+++ G  PRLVELL  PS ++ 
Sbjct: 248 VAVPILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQ 307

Query: 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363
            PALR+VGNIVTG D QTQ II  GAL     LL+H  K++I+KEACWTISNITAGN  Q
Sbjct: 308 TPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSH-QKENIRKEACWTISNITAGNTQQ 366

Query: 364 IQVMI 368
           IQ +I
Sbjct: 367 IQAII 371

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. Active directional transport is assured by both, a Phe-Gly (FG) repeat affinity gradient for these transport factors across the NPC and a transport cofactor concentration gradient across the nuclear envelope. Involved in nuclear protein import. Required for efficient nuclera import of both an SV40 nuclear localization signal-containing reporter protein and the pap1 component of the stress response MAP kinase pathway. Required for proper mitotic progression.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/344 (59%), Positives = 248/344 (72%), Gaps = 13/344 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           DS LQL  T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQ +I
Sbjct: 333 LNCSALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVI 375

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/344 (58%), Positives = 247/344 (71%), Gaps = 13/344 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           D  LQL  T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQ +I
Sbjct: 333 LNCSALPCLLHLLS-SSKESIRKEACWTISNITAGNRAQIQAVI 375

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/344 (58%), Positives = 247/344 (71%), Gaps = 13/344 (3%)

Query: 34  VEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA-------MVAGVWSD 86
           +++RK KRE+ L K+R   L +++    A   +L + + + S          MV  ++SD
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEE---AAMFDSLLMDSYVSSTTGESVITREMVEMLFSD 92

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNI 145
           DS LQL  T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNI
Sbjct: 93  DSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNI 152

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           ASGTS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGN+AGDS  CRD VL+   L 
Sbjct: 153 ASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILN 212

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDA 264
           PLL  L +  +L+M RNA W LSN CRGK P P F +V P LP L++L+ S+D ++L DA
Sbjct: 213 PLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADA 272

Query: 265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
           CWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTGDD QTQ I
Sbjct: 273 CWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVI 332

Query: 325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +   ALP LL LL+ S K+SI+KEACWTISNITAGNR QIQ +I
Sbjct: 333 LNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVI 375

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
224110258	529	predicted protein [Populus trichocarpa]	0.997	0.693	0.888	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.994	0.691	0.894	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.997	0.692	0.891	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.997	0.691	0.897	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.994	0.691	0.883	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.997	0.691	0.888	0.0
224101863	383	predicted protein [Populus trichocarpa]	0.991	0.953	0.882	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.997	0.692	0.883	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.997	0.693	0.877	0.0
13752562	529	importin alpha 2 [Capsicum annuum]	0.972	0.676	0.875	0.0

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/368 (88%), Positives = 350/368 (95%), Gaps = 1/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQ+QQFPP
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQFPP 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A  S+ N++ KLE+LP+MVAGVWS+D +LQLE+TTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 61  -AILSSSNVEKKLENLPSMVAGVWSEDGNLQLESTTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 120 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 180 VWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPALPAL +LVHS DEEVLTD+CWALSYLSDGT+DKIQAVIEAGVCPRLVELL HPSP
Sbjct: 240 QVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTDDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVL+PALRTVGNIVTGDD QTQCIIT GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 360 KEQIQAVI 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/368 (89%), Positives = 347/368 (94%), Gaps = 2/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREGLQ+QQFP 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPA 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A AS +  + KLESLP+MVAGVWSD+SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  AAHASTV--EKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 118

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 119 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 178

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVL  GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPFD
Sbjct: 179 VWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFD 238

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QV+PALPAL +LVHS+DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 239 QVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 298

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 299 SVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 358

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 359 KEQIQAVI 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/368 (89%), Positives = 348/368 (94%), Gaps = 1/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRPNAR E+RRNRYKVAVDADEGRRRREDNMVEIRK+KREESLLKKRREGLQ+QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQ-QF 59

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PAP  N  +  KLESLPAMVAGVWSDD+S+QLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 60  PAPLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQA
Sbjct: 120 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLSQGAL+PLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 180 VWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC RLV+LL HPSP
Sbjct: 240 QVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GALP LL LLT++HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 360 KEQIQTVI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/369 (89%), Positives = 348/369 (94%), Gaps = 2/369 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ-FP 59
           MSLRPNAR EVRRNRYKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ+QQ FP
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
            P  AS++ ++ KLESLPAMVAGVWSDD+S QLEATTQFRKLLSIERSPPIEEVIQ+GVV
Sbjct: 61  TPLQASSI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVV 119

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQ
Sbjct: 120 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 179

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGNVAGDSPRCRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +QVR ALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPS
Sbjct: 240 EQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPS 299

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRTVGNIVTGDD QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAG 359

Query: 360 NRDQIQVMI 368
           NRDQIQ +I
Sbjct: 360 NRDQIQAVI 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/368 (88%), Positives = 344/368 (93%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQ QQ P 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQPQQQPF 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PA      ++ KLESLP+MVAGVWS+D++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  PANLHTSTVEKKLESLPSMVAGVWSNDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFLMRED+PQLQFEAAWALTNIASGTS+NT+VVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLMREDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPSDDVREQA 180

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLS GALIPLLAQLNE  KLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPAL AL +LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QVRPALSALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHPSP 300

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GAL  LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDLQTQCIIEHGALTCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 361 KEQIQAVI 368

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/369 (88%), Positives = 348/369 (94%), Gaps = 2/369 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ-FP 59
           MSLRPNAR EVRRNRYKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ+QQ FP
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
            P  A+++ ++ KLESLPAMVAGVWSDD+S QLEATTQFRKLLSIERSPPIEEVIQ+GVV
Sbjct: 61  TPLQAASI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVV 119

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
           PRFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQ
Sbjct: 120 PRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQ 179

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           AVWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
           +QVR ALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPS
Sbjct: 240 EQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPS 299

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
           PSVLIPALRTVGNIVTGDD QTQ II +GALP LL LLTH+HKKSIKKEACWTISNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAG 359

Query: 360 NRDQIQVMI 368
           NRDQIQ ++
Sbjct: 360 NRDQIQAVV 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101863|ref|XP_002334234.1| predicted protein [Populus trichocarpa] gi|222870218|gb|EEF07349.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/366 (88%), Positives = 343/366 (93%), Gaps = 1/366 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+ R +VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESL KKRREGL +QQFP 
Sbjct: 1   MSLRPSTRTDVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLLAQQFPA 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A  S+ N++ KLESLP+MV+GVWSDDS+LQLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 61  -AVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVE L+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 120 RFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 180 VWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           +VRPALPAL +LVHS DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 240 KVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVL+PALRTVGNIVTGDD QTQCII  GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQV 366
           ++QIQV
Sbjct: 360 KEQIQV 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/368 (88%), Positives = 345/368 (93%), Gaps = 1/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRPNAR EVRRNRYKVAVDADEGRRRREDNMV IRK+KREESLLKKRREGLQ+ Q   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVXIRKSKREESLLKKRREGLQAHQ-QL 59

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           PAP  N  +   LESLPAMVAGVWS+D+SLQLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 60  PAPLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL+SPSDDVREQA
Sbjct: 120 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLS GAL+PLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 180 VWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPALPAL +LV SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL++LL HPSP
Sbjct: 240 QVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GALP LL LLT++HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 360 KEQIQTVI 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/368 (87%), Positives = 344/368 (93%), Gaps = 1/368 (0%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+ R +VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESL KKRREGL +QQFP 
Sbjct: 1   MSLRPSTRTDVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLLAQQFPA 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A  S+ N++ KLESLP+MV+GVWSDDS+LQLEATTQFRKLLSIERSPPIEEVIQ+GVVP
Sbjct: 61  -AVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVP 119

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVE L+RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 120 RFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQA 179

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 180 VWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFE 239

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           +VRPALPAL +LVHS DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 240 KVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVL+PALRTVGNIVTGDD QTQCII  GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 300 SVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 359

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 360 KEQIQAVI 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752562|gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/368 (87%), Positives = 342/368 (92%)

Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPP 60
           MSLRP+AR EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESLLKKRREGLQ+QQ   
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQQF 60

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           P+      ++ KL SLP+MVAGVWS D++LQLEA TQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 61  PSNLQTSTVEKKLASLPSMVAGVWSTDNNLQLEANTQFRKLLSIERSPPIEEVIQSGVVP 120

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFVEFL+RED+PQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLLREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLGSPSDDVREQA 180

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSPRCRDLVLS GALIPLLAQLNE AKLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           QVRPAL AL +LVHS DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QVRPALSALQRLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLVHPSP 300

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII +GALP LL LLTH+HKKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDLQTQCIIEHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 361 RDQIQVMI 368
           ++QIQ +I
Sbjct: 361 KEQIQAVI 368

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.997	0.685	0.854	1.4e-165
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.994	0.687	0.817	3.7e-158
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	1.0	0.684	0.753	3.5e-146
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	1.0	0.693	0.731	6.1e-142
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.991	0.677	0.728	4.4e-139
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.989	0.701	0.657	1.5e-124
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.970	0.691	0.626	1e-116
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.934	0.651	0.653	3.6e-112
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.970	0.645	0.624	7.8e-110
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.970	0.647	0.631	2.6e-109

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
 Identities = 316/370 (85%), Positives = 338/370 (91%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ--- 57
             MSLRPNA+ EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREGLQ+ Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    58 FXXXXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG 117
             F      ++  ++ KLESLPAMV GVWSDD SLQLEATTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSENTKVVI+HGAVPIFV+LLAS SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237
             EQAVWALGNVAGDSPRCRDLVL QGALIPLL+QLNE AKLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
             PFDQVRPALPAL +L+HS DEEVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
              SPSVLIPALR++GNIVTGDD QTQC+I++GAL  LL LLTH+HKKSIKKEACWTISNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   358 AGNRDQIQVM 367
             AGNRDQIQ +
Sbjct:   361 AGNRDQIQAV 370

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
 Identities = 301/368 (81%), Positives = 330/368 (89%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRPNA+ EVRRNRYKVAVDA+EGRRRREDNMVEIRK+KREESL+KKRREG+Q+ Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQ--G 58

Query:    61 XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
                 S  ++  KL+SL  MVAGVWSDD +LQLE+TTQFRKLLSIERSPPIEEVI +GVVP
Sbjct:    59 FPSASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118

Query:   121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
             RFVEFL +EDYP +QFEAAWALTNIASGTS++TKVVIDH AVPIFV+LLASPSDDVREQA
Sbjct:   119 RFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQA 178

Query:   181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
             VWALGNVAGDSPRCRDLVL  GAL+PLL QLNE AKLSMLRNATWTLSNFCRGKPQP FD
Sbjct:   179 VWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFD 238

Query:   241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
             QV+PALPAL +L+HS+DEEVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SP
Sbjct:   239 QVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSP 298

Query:   301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
             SVLIPALRTVGNIVTGDD QTQC+I  GALP L  LLT +HKKSIKKEACWTISNITAGN
Sbjct:   299 SVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGN 358

Query:   361 RDQIQVMI 368
             +DQIQ ++
Sbjct:   359 KDQIQTVV 366

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 281/373 (75%), Positives = 317/373 (84%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRP+ RAE+R+  YK  VDADE RRRREDN+VEIRKNKRE+SLLKKRREG+  QQ   
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    61 XXXXSN-----LNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ 115
                  +       ++ +LE +P MV GV+SDD   QLEATTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS++T+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
             VREQAVWALGNVAGDSP CR+LVL+ GAL PLLAQLNE +KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
               PF+QV+PALP L QL++ NDEEVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355
             GH SP+VLIPALRTVGNIVTGDD QTQ II  G LP+L  LLT +HKKSIKKEACWTISN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   356 ITAGNRDQIQVMI 368
             ITAGN+ QI+ ++
Sbjct:   361 ITAGNKLQIEAVV 373

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
 Identities = 270/369 (73%), Positives = 313/369 (84%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRP+A+ EVRRNRYKVAVDA+EGRRRREDN+VEIRKNKREE+L KKR     +     
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    61 XXXXSNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                  +L+   +L ++LPAMVAG+WS+DS+ QLEAT   RKLLSIE++PPI EV+QSGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
             PR V+FL R+D+P+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LL+S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
             AVWALGNVAGDSP+CRDLVLS GA+ PLL+Q NE  KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             +Q +PALP L +LV S DEEVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LLGH S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
             PSVLIPALRT+GNIVTGDD QTQ ++   ALP LL LL +++KKSIKKEACWTISNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   360 NRDQIQVMI 368
             N DQIQ +I
Sbjct:   361 NADQIQAVI 369

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
 Identities = 268/368 (72%), Positives = 310/368 (84%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MS +P+A+ EVRRNRYKV+VDADEGRRRREDNMVEIRKNKREE+L KKRREG        
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    61 --XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV 118
                   S+L  +T+LE++  M+AGV S+D  LQLEAT  FR+LLSIER+PPI EV+QSGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSENT+V+ID GAVP+FVKLL+S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
             QAVWALGNVAGDSP+CRD VLS  A++ LLAQ +E +KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   239 FDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
             F+Q  + ALPAL +L+HS DEEVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
             PSPSVLIPALRT+GNIVTGDD QTQ +I+  ALP LL LL +++KKSIKKEACWTISNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   358 AGNRDQIQ 365
             AGN  QIQ
Sbjct:   361 AGNTSQIQ 368

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 242/368 (65%), Positives = 292/368 (79%)

Query:     1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
             MSLRP+ + E+RR RYKV+VDA+EGRRRRED +VEIRK+KR E+L+KKRR  +    +  
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    61 XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
                 SN   ++ LE +  M+ GV+SDD SLQLE TT+FR +LS +RSPP + VI+SGVVP
Sbjct:    61 I---SNDPFESLLE-IANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116

Query:   121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
             RFVEFL ++D P+LQFEAAWALTNIASG SE+TKVVIDHG VP+FV+LLASP DDVREQA
Sbjct:   117 RFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQA 176

Query:   181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
             +W LGNVAGDS +CRD VL+ GA IPLL QLN  A LS+LRNATWTLSNF RGKP PPFD
Sbjct:   177 IWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFD 236

Query:   241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
              V+  LP L +LV+S+DE+VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL H SP
Sbjct:   237 LVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASP 296

Query:   301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
              VL+PALR +GNIV+G+  QT C+I  G LP L  LLT +H + I++EACWTISNITAG 
Sbjct:   297 VVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGL 356

Query:   361 RDQIQVMI 368
              +QIQ +I
Sbjct:   357 EEQIQSVI 364

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 228/364 (62%), Positives = 292/364 (80%)

Query:     7 ARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXXXXXXSN 66
             ++ E R+++YK ++D+DE RR+RE+  + IRKNKREESLLKKR + +           S 
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGS--TPVKVDSL 61

Query:    67 LNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL 126
             +N   +LE LP++VA + S++  L L++TT FRKLLSIE+SPPIEEVI++G+VPR V+FL
Sbjct:    62 IN--QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFL 119

Query:   127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186
               +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL+SP DDVREQAVWALGN
Sbjct:   120 YMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGN 179

Query:   187 VAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQVRP 244
             +AGDS  CRDLVLS  AL PLL+ L   A  K+SM+RNATWTLSNFCRGKPQPPF+ VR 
Sbjct:   180 IAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRA 239

Query:   245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
             +LP LA+L++  DEEVL DACWALSYLSDG+N++IQ VI+A VC ++VELLGHP+ +V  
Sbjct:   240 SLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQT 299

Query:   305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
             PALRT+GNIVTGDD QTQ +++  AL +LL LL  S K++I+KEACWTISNITAG+++QI
Sbjct:   300 PALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQI 358

Query:   365 QVMI 368
             Q +I
Sbjct:   359 QQVI 362

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
 Identities = 234/358 (65%), Positives = 269/358 (75%)

Query:    11 VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXXXXXXSNLNLQ 70
             VRR+ YK  VD   GRRRRED+MVEIRK KREESLLKKRRE L           S  +L 
Sbjct:     9 VRRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHSP-------SADSLD 61

Query:    71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMRE 129
              KL      ++ +WSD+  L +EATTQ R LL  E  +  +EEVIQ+G+VPRFVEFL  +
Sbjct:    62 QKL------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWD 115

Query:   130 DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 189
             D PQLQFEAAWALTNIASGTSENT+VVIDHGAV I V+LL SP D VREQ VWALGN++G
Sbjct:   116 DSPQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISG 175

Query:   190 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL 249
             DSPRCRD+VL   AL  LL QLN  AKLSML NA WTLSN CRGKPQPPFDQV  ALPAL
Sbjct:   176 DSPRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPAL 235

Query:   250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
             AQL+  +D+E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT
Sbjct:   236 AQLIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRT 295

Query:   310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367
             +GNIVTG+D QTQ II   ALP L+ LL  S+ K+I+KEACWT+SNITAG + QIQ +
Sbjct:   296 IGNIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAV 353

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 231/370 (62%), Positives = 277/370 (74%)

Query:    10 EVRRNRYKVAVD--ADEGRRRREDNMVEIRKNKREESLLKKR----REG---LQSQQFXX 60
             E RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +       
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 XXXXSNLNLQTKLE-SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                     ++++L   LP MV GV+SD    Q++ATT+FRKLLS ER+PPIE VI++GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL+SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP 238
             AVWALGN+AGDSP+CRD VL+ GAL PLL  +N+  K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
             ++ + PALP LA+L++  D+EVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
             S SV  PALR+VGNIVTGDD QTQ II  GALP LL LL+ S K  I+KEACWTISNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLS-STKDGIRKEACWTISNITA 365

Query:   359 GNRDQIQVMI 368
             GN  QIQ +I
Sbjct:   366 GNSSQIQSVI 375

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 233/369 (63%), Positives = 276/369 (74%)

Query:    10 EVRRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXXXXXXS-- 65
             E RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G  + +       +  
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    66 ----NLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
                     +++L E LP MV GV+S+    Q++ATT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF 239
             VWALGN+AGDSP+CRD VLS GAL PLL  L +  KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
               + PALP LA+LV+S D+EVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
              SV  PALR+VGNIVTGDD QTQ II  GALP LL LL  S+K  I+KEACWTISNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLG-SNKDGIRKEACWTISNITAG 365

Query:   360 NRDQIQVMI 368
             N  QIQ ++
Sbjct:   366 NSAQIQSVV 374

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5901	0.8994	0.6175	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5872	0.8994	0.6175	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5528	0.9673	0.6568	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5671	0.9646	0.6586	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6301	0.9673	0.6899	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.8211	0.9945	0.6944	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5872	0.8994	0.6175	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5872	0.8994	0.6175	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8586	0.9945	0.6958	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-154
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-35
pfam01749	97	pfam01749, IBB, Importin beta binding domain	1e-32
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-32
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-17
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-13
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-08
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	7e-08
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	4e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	5e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.001
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.002

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  443 bits (1140), Expect = e-154
 Identities = 213/364 (58%), Positives = 257/364 (70%), Gaps = 10/364 (2%)

Query: 10  EVRRNRY--KVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNL 67
           E RR  +  K    ADE RRRRE+  VE+RK KREE L  KRR      +    A +S +
Sbjct: 8   EARRYNFKGKGRFSADELRRRREEQQVELRKQKREELL-NKRRNLADVSE---EAESSFI 63

Query: 68  NLQTKLES-LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL 126
            ++ +  S LP +   ++SDD   QL+A  +FRKLLS E SPPI+ VI +GVVPRFVEF+
Sbjct: 64  PMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM 123

Query: 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186
                  LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL+S  DDVREQAVWALGN
Sbjct: 124 DEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGN 183

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFDQVRP 244
           +AGDS  CRD VL  GAL PLL  L   A  +SMLRNATWTLSN CRGK P P +  +  
Sbjct: 184 IAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           ALP LA+L++S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  
Sbjct: 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
           PALR+VGNIVTG D QTQ II  GAL     LL+   K++I+KEACWTISNITAGN +QI
Sbjct: 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQI 362

Query: 365 QVMI 368
           Q +I
Sbjct: 363 QAVI 366

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  125 bits (317), Expect = 1e-35
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
           E VIQ+G +P  V  L   D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           S  ++V + A+WAL N+A      + +VL  G  +P L  L + +   + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 231 CR 232
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  117 bits (295), Expect = 1e-32
 Identities = 42/97 (43%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4  RPNARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPA 62
              + E RR  YK    DA+E RRRRE+  VE+RKNKREE LLK+R  GL  +    P 
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 PASNLNLQT--KLESLPAMVAGVWSDDSSLQLEATTQ 97
             + +         LP MV GV SDD   QL AT  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  115 bits (291), Expect = 8e-32
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            LPAL  L+ S+DE V  +A WALS LS G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
            AL  + N+  G +     ++  G +P L+ LL  S  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LPA+V+ + S D ++Q EA      L S   +  I+ V+++G +P  V+ L  ED  ++ 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVV 66

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188
             A WAL N+A+G  +N  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLV 253
           + V+  G L P L  L   +  ++ R A W LSN   G        V  A  LPAL QL+
Sbjct: 1   EAVIQAGGL-PALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLL 58

Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
            S DEEV+  A WAL  L+ G  D    V+EAG  P+LV LL   +  +   A   + N+
Sbjct: 59  KSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 314 VT 315
            +
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
           +AVI+AG  P LV LL     +V   A   + N+  G++   Q ++  G LP L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 340 SHKKSIKKEACWTISNITAGNRDQIQVMI 368
             ++ + K A W + N+ AG  D   +++
Sbjct: 61  EDEE-VVKAALWALRNLAAGPEDNKLIVL 88

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 89/266 (33%)

Query: 106 RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165
           ++PP +    S  +P   + +   D P++  +A WA++ ++ G +E  + V+D G     
Sbjct: 232 KNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290

Query: 166 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 225
           V+LL+  S  ++  A+ ++GN+   S     ++++ GAL                     
Sbjct: 291 VELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGAL--------------------- 329

Query: 226 TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
                                 A   L+ S  E +  +ACW +S ++ G  ++IQAVI+A
Sbjct: 330 ---------------------KAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDA 368

Query: 286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 345
            + P L+ LL                                            S +  I
Sbjct: 369 NLIPPLIHLL-------------------------------------------SSAEYKI 385

Query: 346 KKEACWTISNITAG--NR-DQIQVMI 368
           KKEACW ISN T+G  NR D I+ ++
Sbjct: 386 KKEACWAISNATSGGLNRPDIIRYLV 411

Length = 526

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 16/40 (40%), Positives = 26/40 (65%)

Query: 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188
             EN + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query: 149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 188
           + EN + VI+ GAVP  V+LL+SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 5e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.2 bits (116), Expect = 6e-08
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 106 RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
                + V+ +G +P  VE L  ED  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172
           +I  G +      L+      ++ EA W ++NI +G +E  + VID   +P  + LL+S 
Sbjct: 323 IINCGALK-AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381

Query: 173 SDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPLLAQLN 212
              ++++A WA+ N         D++   +SQG + PL   L+
Sbjct: 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424

Length = 526

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 47.8 bits (115), Expect = 8e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 107 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
               + VI++G VP  V+ L   D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
            ++  QAV++AG  P LVELL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSD 273
           A+P L QL+ S DEEV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
             Q +I  GA+P L+ LL+   +  +++EA W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSD 273
            LPAL +L+ S DEEV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +   +E L+ +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 179 QAVWALGNVAGDS 191
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.3 bits (93), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
           DD   Q ++  G LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 191 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 232
           SP  +  V+  GA+ PL+  L+      +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           VRE A  ALG +AG  P      + +  L+P L  L +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 51/212 (24%), Positives = 69/212 (32%), Gaps = 38/212 (17%)

Query: 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181
            +  L+ ++   ++  AA AL  + S             AVP+  +LL+     VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 182 WALGNVAGDSPRCRDLV----------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 231
            ALG + GD      LV          +   A   L    +ERA   +L       S   
Sbjct: 96  DALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSA 154

Query: 232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEA----- 285
                     VR A  A   L    D E    A   L   L D   D  +A   A     
Sbjct: 155 AAALDAALLDVRAA--AAEALGELGDPE----AIPLLIELLEDEDADVRRAAASALGQLG 208

Query: 286 ----GVCPRLVELLGHPSPSVLIPALRTVGNI 313
                    LV+ L   S  V   AL  +G I
Sbjct: 209 SENVEAADLLVKALSDESLEVRKAALLALGEI 240

Length = 335

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 162 VPIFVKLLASPSDDVREQAVWALGNVA 188
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.8
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.78
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.69
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.65
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.64
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.64
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.63
PRK09687	280	putative lyase; Provisional	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.56
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.56
PRK09687	280	putative lyase; Provisional	99.55
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.55
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.52
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.52
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.48
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.43
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.38
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.37
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.36
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.34
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.33
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.32
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.32
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.32
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.28
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.22
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.2
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.19
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.16
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.15
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.15
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.13
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.13
PTZ00429	746	beta-adaptin; Provisional	99.12
PTZ00429	746	beta-adaptin; Provisional	99.12
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.08
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.08
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.07
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.05
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.03
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.0
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.98
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.91
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.9
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.87
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.87
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.7
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.69
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.66
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.66
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.62
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.57
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.54
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.54
TIGR02270	410	conserved hypothetical protein. Members are found	98.53
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.52
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.51
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.5
TIGR02270	410	conserved hypothetical protein. Members are found	98.48
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.47
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.45
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.44
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.42
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.42
COG5369	743	Uncharacterized conserved protein [Function unknow	98.42
PF05536	543	Neurochondrin: Neurochondrin	98.42
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.41
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.4
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.36
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.36
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.33
COG5369	743	Uncharacterized conserved protein [Function unknow	98.32
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.29
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.29
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.27
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.26
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.24
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.22
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.19
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.19
PF05536	543	Neurochondrin: Neurochondrin	98.17
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.16
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.15
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.14
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.12
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.12
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.12
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.11
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.09
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.03
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.01
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.99
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.99
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.95
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.91
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.9
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.89
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.89
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.89
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.88
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.88
KOG0567	289	consensus HEAT repeat-containing protein [General	97.84
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.84
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.78
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.77
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.77
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.68
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.66
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.65
PF05004	309	IFRD: Interferon-related developmental regulator (	97.57
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.54
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.46
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.45
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.4
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.4
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.39
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.36
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.35
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.34
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.32
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.32
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.31
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.28
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.28
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.27
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.26
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.2
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.19
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.18
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.13
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.13
PF08045	257	CDC14: Cell division control protein 14, SIN compo	97.12
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.12
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.11
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.11
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.08
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.07
PF05004	309	IFRD: Interferon-related developmental regulator (	97.06
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.99
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.98
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.98
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.97
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.92
KOG0567	289	consensus HEAT repeat-containing protein [General	96.9
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.85
KOG2956	516	consensus CLIP-associating protein [General functi	96.85
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.82
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.81
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.78
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.77
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.75
KOG2956	516	consensus CLIP-associating protein [General functi	96.72
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.7
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.64
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.63
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.6
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.56
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.55
KOG3036	293	consensus Protein involved in cell differentiation	96.53
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.51
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.45
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.43
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.39
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.31
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.31
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.24
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.23
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.23
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.21
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.08
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.05
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.01
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.97
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.93
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.93
KOG3036	293	consensus Protein involved in cell differentiation	95.9
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.9
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.89
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.85
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.84
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	95.84
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.68
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.64
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.64
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.57
KOG2025	892	consensus Chromosome condensation complex Condensi	95.54
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.47
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.35
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.33
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.29
KOG1243	690	consensus Protein kinase [General function predict	95.24
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.2
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.2
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.17
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.16
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.99
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.92
KOG1243	690	consensus Protein kinase [General function predict	94.88
KOG2025	892	consensus Chromosome condensation complex Condensi	94.72
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.67
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.59
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.45
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.34
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	94.32
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.23
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.2
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.18
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.07
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.07
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.06
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	93.97
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.96
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.85
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.72
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.61
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.56
KOG2032	533	consensus Uncharacterized conserved protein [Funct	93.5
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.43
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	93.4
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	93.27
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	93.08
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	92.97
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.9
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.87
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.87
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	92.76
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.61
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.54
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.46
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.26
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	92.02
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	91.86
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	91.85
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.5
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	91.31
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	91.26
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.22
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.03
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	90.66
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	90.58
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.46
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	90.11
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.05
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	89.95
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	89.53
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	89.43
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.36
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.27
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.03
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	88.94
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	88.87
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.86
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.71
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	88.67
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	88.62
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.44
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	88.34
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.07
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.9
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	87.85
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	87.48
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	87.29
PF11791	154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	87.18
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	87.09
KOG0413	1529	consensus Uncharacterized conserved protein relate	87.03
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	86.49
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	85.88
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.84
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	85.79
PRK14707	2710	hypothetical protein; Provisional	85.61
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	85.57
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	85.47
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	85.05
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	84.94
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.72
PF12783	168	Sec7_N: Guanine nucleotide exchange factor in Golg	84.72
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	84.55
KOG1988	970	consensus Uncharacterized conserved protein [Funct	84.2
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.7
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	83.51
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	83.1
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	81.95
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	81.81
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	81.73
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	81.69
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	81.36
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	81.3
KOG2549	576	consensus Transcription initiation factor TFIID, s	80.37
PRK14707	2710	hypothetical protein; Provisional	80.14
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	80.06
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	80.03

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.8e-71  Score=464.04  Aligned_cols=356  Identities=59%  Similarity=0.898  Sum_probs=327.4

Q ss_pred             cchHHHHhhccc--CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCC-CCCCCCCcchhhhhh-hccHHHHHHh
Q 017651            7 ARAEVRRNRYKV--AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQ-FPPPAPASNLNLQTK-LESLPAMVAG   82 (368)
Q Consensus         7 ~~~~~r~~~~k~--~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~-~~~~~~~~~~~~~~~-~~~i~~l~~~   82 (368)
                      ..+++|+.+||.  .+.++|+|++|++.++|+||+||+|.|.||||....+++ +++..+     .+++ -..+|.+.+.
T Consensus         5 f~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~-----meqq~~~elp~lt~~   79 (526)
T COG5064           5 FVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIP-----MEQQFYSELPQLTQQ   79 (526)
T ss_pred             cchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCc-----hhHHhhhhhHHHHHH
Confidence            467789999998  477999999999999999999999999999998443322 222111     1122 2368999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCCh
Q 017651           83 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV  162 (368)
Q Consensus        83 l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  162 (368)
                      |.|+|.+.+..|+..+|+++|.+.+|+++.++++|++|.|++++......-++.+|+|+|+|+++++..++..++++|++
T Consensus        80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV  159 (526)
T COG5064          80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV  159 (526)
T ss_pred             HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence            99999999999999999999999999999999999999999999654436889999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCC-CCCChh
Q 017651          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGK-PQPPFD  240 (368)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~~  240 (368)
                      |.++++|.+++.+++++++|+|||+|+|++.+|+.+++.|++++++.++..+. +..+.+++.|+|+|||+++ |.+...
T Consensus       160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~  239 (526)
T COG5064         160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWS  239 (526)
T ss_pred             HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchH
Confidence            99999999999999999999999999999999999999999999999995443 6799999999999999998 888888


Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                      .+...+|.|.+++.+.|+++..+|||+++||++++.+.++.+++.|+.+.|+++|.+++..++.+|++.+||++++++.+
T Consensus       240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q  319 (526)
T COG5064         240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ  319 (526)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhcC
Q 017651          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI  368 (368)
Q Consensus       321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~vi  368 (368)
                      ++.+++.|+++.+..+|+++ ...+||+|||+|+||++|+.+|||+||
T Consensus       320 TqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavi  366 (526)
T COG5064         320 TQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVI  366 (526)
T ss_pred             eehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHH
Confidence            99999999999999999999 889999999999999999999999986

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-67  Score=473.97  Aligned_cols=355  Identities=70%  Similarity=1.049  Sum_probs=324.7

Q ss_pred             hHHHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCC
Q 017651            9 AEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDD   87 (368)
Q Consensus         9 ~~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~   87 (368)
                      ...|.++||+ +++++|+|+||++..+|+||+||+|.|+|||+..++....+....     ........+.++..+.|++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~S~~   79 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELLSD-----SQSQASNLELMLAALYSDD   79 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccccch-----hHHHhhhhHHHHHHHhCCC
Confidence            3467777887 799999999999999999999999999999993222221111100     1112234788899999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH
Q 017651           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK  167 (368)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  167 (368)
                      ++.+..+...++++++.+.+|++..++..|++|.|+++|...+++.++.+|+|+|+||++++++++..+++.|++|.|+.
T Consensus        80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~  159 (514)
T KOG0166|consen   80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ  159 (514)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence            99999999999999999989999999999999999999987776999999999999999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchH
Q 017651          168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPAL  246 (368)
Q Consensus       168 lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~  246 (368)
                      ++.+++..++++|+|+|+|++++++.+|+.++.+|++++|+.++..+....+.++++|+|+|||+++ |.+.+..+..++
T Consensus       160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL  239 (514)
T KOG0166|consen  160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL  239 (514)
T ss_pred             HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999966656689999999999999999 889999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH
Q 017651          247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT  326 (368)
Q Consensus       247 ~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~  326 (368)
                      |.|..++++.|++|..+|||+++||++++++.++.+++.|+++.|+.+|.+.++.++.+|++++|||++|++.+++.+++
T Consensus       240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~  319 (514)
T KOG0166|consen  240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN  319 (514)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhcC
Q 017651          327 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI  368 (368)
Q Consensus       327 ~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~vi  368 (368)
                      .|+++.|..++..++...+|++|||+|+||++|+++|||+||
T Consensus       320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVi  361 (514)
T KOG0166|consen  320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVI  361 (514)
T ss_pred             cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            999999999999554778999999999999999999999985

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-44  Score=322.77  Aligned_cols=289  Identities=30%  Similarity=0.480  Sum_probs=262.7

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.+++.+.. .++.++++|+|+|.+++++. ......++++|.+|.|+.++.+++ ..++.+|+|+|+|++.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            679999999974 55999999999999999986 788888999999999999999999 899999999999999999999


Q ss_pred             hHHHhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCC-hhhH-HHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDS-PRCR-DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~-~~~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      ++.+++.|++++|+.++..++. .+...+.|+|+|||.+. |... +.+.  .+++.|..++ ++.|.++...+||++++
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~--~iLp~L~~ll-~~~D~~Vl~Da~WAlsy  263 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA--PILPALLRLL-HSTDEEVLTDACWALSY  263 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH--HHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence            9999999999999999987664 78899999999999765 3221 2333  3789999999 99999999999999999


Q ss_pred             hhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcchHHHHH
Q 017651          230 FCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPAL  307 (368)
Q Consensus       230 l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~  307 (368)
                      |+.+.+.... ....+++|.|+++|.++++.++..|+.+++|++.+++.+++.+++.|+++.|..+|. ++...++..||
T Consensus       264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc  343 (514)
T KOG0166|consen  264 LTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC  343 (514)
T ss_pred             HhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence            9988644433 344899999999999999999999999999999999999999999999999999997 66777999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhcC
Q 017651          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVMI  368 (368)
Q Consensus       308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~vi  368 (368)
                      |+|+||+.|+.++++.+++.|++|.|+.+|++. +..+||||+|+|+|+++ |+++|+.+++
T Consensus       344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv  404 (514)
T KOG0166|consen  344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLV  404 (514)
T ss_pred             HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence            999999999999999999999999999999999 89999999999999998 8999998863

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.2e-43  Score=295.41  Aligned_cols=289  Identities=27%  Similarity=0.395  Sum_probs=256.3

Q ss_pred             ccHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l-~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.+++.+ ..+..-.+++|+|+|.++.|+. .....-++++|.+|.|+++|.+++ .+++.++.|+|+|++.+++.+
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhH
Confidence            5699999999 5667789999999999999986 667777889999999999999998 899999999999999999999


Q ss_pred             hHHHhhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      ++.+++.|++.+++.++.++.  ..+...+.|+|+|||... |..-...+. ..+|.|.+++ ...|+++...|||+++.
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is-qalpiL~KLi-ys~D~evlvDA~WAiSY  269 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS-QALPILAKLI-YSRDPEVLVDACWAISY  269 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH-HHHHHHHHHH-hhcCHHHHHHHHHHHHH
Confidence            999999999999999998754  588999999999999643 222122222 2688888888 88899999999999999


Q ss_pred             hhcCCCCCChhh-hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651          230 FCRGKPQPPFDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  308 (368)
Q Consensus       230 l~~~~~~~~~~~-~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~  308 (368)
                      |+.++....... ..++.+.|+++|.+++..+++.++..++|+..+++.+.+.++..|+++.+..+|+++...++..|||
T Consensus       270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW  349 (526)
T COG5064         270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW  349 (526)
T ss_pred             hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence            999863333333 3677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC---CHHHhhhc
Q 017651          309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQVM  367 (368)
Q Consensus       309 ~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~i~~v  367 (368)
                      +|+|+.+++.++.+++++.+++|.|+++|++. +..++|+|||+++|.++|   -|++|.++
T Consensus       350 TiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryL  410 (526)
T COG5064         350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYL  410 (526)
T ss_pred             eecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence            99999999999999999999999999999998 999999999999999974   67887765

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=285.31  Aligned_cols=289  Identities=21%  Similarity=0.253  Sum_probs=245.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.+|.++..+.++++..+..|++.+.+++... .+.+..+++.|+||.|+++|++++++.+|++|+|+|+||++++++++
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r  267 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK  267 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence            57999999999999999999999998887654 55788899999999999999876547999999999999999999999


Q ss_pred             HHHhhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHH---HHhcCChHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSPR-----------CRDL---VLSQGALIPLLAQ  210 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nla~~~~~-----------~~~~---i~~~~~i~~l~~~  210 (368)
                      ..+++.|++|.|+.++.+++         ..++++|+|+|+|||++.+.           .++.   ....|++.+++.+
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l  347 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV  347 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence            99999999999999998654         35699999999999997543           1221   1345778888888


Q ss_pred             hccccchhHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhchHHHHHHhhcCCCHHHHHHHHH
Q 017651          211 LNERAKLSML----RNATWTLSNFCRGK-PQPPFDQ-------------------VRPALPALAQLVHSNDEEVLTDACW  266 (368)
Q Consensus       211 l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~~-------------------~~~~~~~L~~lL~~~d~~v~~~a~~  266 (368)
                      + ..++....    ..++|+|.+|++++ |......                   ..+.++.|+.+|...+.+++.+++|
T Consensus       348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~  426 (2102)
T PLN03200        348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR  426 (2102)
T ss_pred             c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence            7 44443333    35789999999987 3332211                   1345678889999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK  346 (368)
Q Consensus       267 ~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~  346 (368)
                      +|.+++.++.+..+.+.+.|+++.|+++|.+++..++.+|+++++|++.++++++..+++.|++|.|+++|.++ ++.++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq  505 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK  505 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHhcCCHHHhhh
Q 017651          347 KEACWTISNITAGNRDQIQV  366 (368)
Q Consensus       347 ~~a~~~l~nl~~~~~~~i~~  366 (368)
                      ++|+|+|+|++.+ +++++.
T Consensus       506 eeAawAL~NLa~~-~~qir~  524 (2102)
T PLN03200        506 EDSATVLWNLCCH-SEDIRA  524 (2102)
T ss_pred             HHHHHHHHHHhCC-cHHHHH
Confidence            9999999999985 444444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.3e-31  Score=271.13  Aligned_cols=283  Identities=17%  Similarity=0.135  Sum_probs=252.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|+.++...+.+.|..++++|+.++.++ ...++.+++.|++|.|+++|.+++ +.+|..|+|+|++++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999997664 677888999999999999999988 8999999999999999888899


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ..+++.|++|.|+.+|.+++..+++.|+|+|+||+.+++..+..+...|++++|+++| .+.+...+..++|+|.+|+..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888999999999999 667899999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND---KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      ...       ..++.++.+|.++++.++..++.+++++....+.   ..+.....|+++.|+.+|.++++.++..|+++|
T Consensus       561 ~d~-------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL  633 (2102)
T PLN03200        561 ADA-------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL  633 (2102)
T ss_pred             cch-------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            422       2457889999999999999999999998653222   223334579999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM  367 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v  367 (368)
                      +++++++..+++.++..|+++.++.+|+++ +..++++|+|+|+|++. ++++|+.++
T Consensus       634 snL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~~~~q~~~~  690 (2102)
T PLN03200        634 ADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSIKENRKVSY  690 (2102)
T ss_pred             HHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999999999999999 99999999999999997 677776543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-25  Score=191.28  Aligned_cols=279  Identities=22%  Similarity=0.289  Sum_probs=248.8

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      .+++..+.++-++.+...|..++.+|.++...  .++.+.++..|.+|.|++++++++ +++|+.++.+++||+- +...
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaV-d~~~  241 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAV-DRRA  241 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhh-hHHH
Confidence            35678888877889999999999999999754  577888999999999999999999 9999999999999999 4778


Q ss_pred             hHHHhhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          153 TKVVIDHG--AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       153 ~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ++.+.+.+  .+|.|++++.++++.++.+|..+|+||+.+.. ++..+.+.|.+|.++++| +++.....-....|+.|+
T Consensus       242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrni  319 (550)
T KOG4224|consen  242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNI  319 (550)
T ss_pred             HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhc
Confidence            88888888  99999999999999999999999999999874 677889999999999999 777667777888999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651          231 CRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  309 (368)
                      +-.+-+.......|++..|+.+|...| ++++..|..+|.+|+.........+.++|.++.+..++.+....++...-.+
T Consensus       320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac  399 (550)
T KOG4224|consen  320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC  399 (550)
T ss_pred             ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence            988655555566899999999998765 6699999999999998777777889999999999999998889999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      ++.++... .....+.+.|+++.|+.++-+. +.+++-.|+-+|.|++..
T Consensus       400 ~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  400 IAQLALND-NDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHHHhcc-ccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence            99998754 4677899999999999999988 999999999999999974

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.5e-24  Score=184.69  Aligned_cols=277  Identities=23%  Similarity=0.322  Sum_probs=240.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcC--cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG--VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g--~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      +++|.|+..++++|...|+.++.++.++.-.  ....+.+.+.+  ++|.|++++.+++ +.++-.|..+|.|++++ .+
T Consensus       208 G~lpvLVsll~s~d~dvqyycttaisnIaVd--~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasd-t~  283 (550)
T KOG4224|consen  208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--RRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASD-TE  283 (550)
T ss_pred             CCchhhhhhhccCChhHHHHHHHHhhhhhhh--HHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhccc-ch
Confidence            6799999999999999999999999999653  45566677777  9999999999999 89999999999999995 56


Q ss_pred             chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      .+..++++|.+|.++.+|+++.-...-....|+.||+.+. -..-.+.+.|++.||+++|...++++++.++..+|+||+
T Consensus       284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA  362 (550)
T KOG4224|consen  284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA  362 (550)
T ss_pred             hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence            7778899999999999999988888888999999999764 345678899999999999977778889999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          232 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       232 ~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      -.. .+.......+.+|.+..++.+..-+++.....|++.|+-.+.+. ..+.+.|+++.|++++.+.+.+++-.|..++
T Consensus       363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL  441 (550)
T KOG4224|consen  363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWTGSESEEVRGNAAAAL  441 (550)
T ss_pred             hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeecccCccchhhcccHHHHH
Confidence            854 44445555899999999999999999999999999999775554 7899999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHH---c---CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          311 GNIVTGDDFQTQCIIT---Y---GALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~---~---g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +|+++.-+.... +++   +   |+-..|..++.+. +..++.-+.|++..+..
T Consensus       442 ~Nlss~v~~Yar-viEawd~P~~gi~g~L~Rfl~S~-~~tf~hia~wTI~qLle  493 (550)
T KOG4224|consen  442 INLSSDVEHYAR-VIEAWDHPVQGIQGRLARFLASH-ELTFRHIARWTIQQLLE  493 (550)
T ss_pred             HhhhhhhHHHHH-HHHHhcCcchhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Confidence            999986664443 333   2   6777889999998 88999999999999886

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.83  E-value=2.1e-18  Score=165.05  Aligned_cols=278  Identities=22%  Similarity=0.265  Sum_probs=224.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|++.|.+++.+....++..|.++.- . .++...+.+.|+++.|++++.+++ .+++..|+++|.|++. +++.+
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSI-F-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            569999999999999999999999999943 3 567888999999999999999988 8999999999999999 48889


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+|+.+. ..+..+...++++.+++++...++..+...+++.+.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999865  45677999999999876 57899999999999999886666665555555665555544


Q ss_pred             CCCCCh-------------------------------------hhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC
Q 017651          234 KPQPPF-------------------------------------DQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       234 ~~~~~~-------------------------------------~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~~~~  275 (368)
                      +.....                                     ....+.+..|+.++.. +++++...++++|+||...+
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~  522 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD  522 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence            322111                                     1112333444444443 46789999999999999776


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT  352 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~  352 (368)
                      .+....+-+.++++.+..+|..+  .+++...++..+|.++. .+.....+.+.|+++.|+.+|...+ +.++.-+.+++
T Consensus       523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~  601 (708)
T PF05804_consen  523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV  601 (708)
T ss_pred             cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence            66666666789999999999644  46789999999999986 4445666778999999999998763 67899999999


Q ss_pred             HHHHhcC
Q 017651          353 ISNITAG  359 (368)
Q Consensus       353 l~nl~~~  359 (368)
                      +..+...
T Consensus       602 f~~ll~h  608 (708)
T PF05804_consen  602 FYQLLFH  608 (708)
T ss_pred             HHHHHcC
Confidence            9999985

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.80  E-value=2.6e-17  Score=157.54  Aligned_cols=269  Identities=20%  Similarity=0.179  Sum_probs=214.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ..++-.++..++ .+.+.+...|.+++..  ......+.+.|+++.|+++|.+++ .++...++.+|.+++- ..+++..
T Consensus       252 ~kk~~~l~~kQe-qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~  326 (708)
T PF05804_consen  252 LKKLQTLIRKQE-QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDE  326 (708)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHH
Confidence            344444555444 3555777888888642  444566889999999999999987 8999999999999999 4788999


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      +.+.|+++.|.+++.+++..++..++++|.||+.+. ..|..++..|++|+|+.+|. +  +..+..++.+|++++..+.
T Consensus       327 m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~  402 (708)
T PF05804_consen  327 MAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDE  402 (708)
T ss_pred             HHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHh
Confidence            999999999999999999999999999999999886 57999999999999999994 3  3455678999999999875


Q ss_pred             CCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          236 QPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      ........+++|.+++++- .+++++...+++.+.|++... ...+.+.+.|+++.|+...-....   .-.+.++-|++
T Consensus       403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS  478 (708)
T PF05804_consen  403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNIS  478 (708)
T ss_pred             hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHH
Confidence            5555555789999988764 457788888999999999875 445788888899999988633322   23456888999


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      .+++.. +..+. +++..|..++..+++++..-++..+|+|++..
T Consensus       479 ~h~~~~-k~~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  479 QHDGPL-KELFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             hcCchH-HHHHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            887533 33333 47777888888876889999999999999864

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.4e-17  Score=152.44  Aligned_cols=262  Identities=24%  Similarity=0.354  Sum_probs=229.7

Q ss_pred             cHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        75 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      .+..|+..+... |+..|++|+..+..+++....+....+--.-++|.|+.+|++.++.++...|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            367888888865 9999999999999998876444444444566899999999998889999999999999999889999


Q ss_pred             HHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          154 KVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      ..+++.++||.|+.-|. -+..++.++++.+|-.|+...+   ..+++.|++...+..| ......+++.|+.+..|.|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999665 4778999999999999998876   3688999999999999 77789999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcCCC----CcchHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHP----SPSVLIP  305 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~  305 (368)
                      .-+...+..+...+|.|..+|+..|.+....+|-++.+++++   .++..+.+...|++....++|.-.    +..+..-
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            888888888889999999999999999999999999999864   578889999999999999998543    3456778


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       306 a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                      .++.+.-++++++.....++..++...+..+|...
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            88999999999998888889989999999988754

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=9.1e-15  Score=137.37  Aligned_cols=278  Identities=24%  Similarity=0.312  Sum_probs=218.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--c
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--N  152 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~  152 (368)
                      .+|+.+.+|.++++..|-.|+..+..+.-+. +.-...+.+.|.|+.||.+|.++. .+++..|+|+|.|++.++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            5899999999999999999999999886653 555556778999999999999999 89999999999999987766  8


Q ss_pred             hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHH--------------------------------
Q 017651          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVL--------------------------------  199 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~--------------------------------  199 (368)
                      +-.+.+.++|+.++.+|+. .|.++++.+..+|+||+..+ .++..++                                
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence            8889999999999999986 78899999999999987663 2322222                                


Q ss_pred             ------------------------hcCChHHHHHHhc-------------------------------------------
Q 017651          200 ------------------------SQGALIPLLAQLN-------------------------------------------  212 (368)
Q Consensus       200 ------------------------~~~~i~~l~~~l~-------------------------------------------  212 (368)
                                              ..|.|+.|+..+.                                           
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~  470 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA  470 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence                                    2344555544441                                           


Q ss_pred             ----------------------------------------------------------cccchhHHHHHHHHHHHhhcCC
Q 017651          213 ----------------------------------------------------------ERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       213 ----------------------------------------------------------~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                                                                                ...+..+.+.++.+|-||+-+.
T Consensus       471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~  550 (717)
T KOG1048|consen  471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL  550 (717)
T ss_pred             ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence                                                                      0111234555666777766554


Q ss_pred             CC-CCh-----hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC------Ccch
Q 017651          235 PQ-PPF-----DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP------SPSV  302 (368)
Q Consensus       235 ~~-~~~-----~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~v  302 (368)
                      .. ...     ...+.++|.|+++|+.+|..|...++.+|.||+.+...  +.++..++++.|+..|...      +.++
T Consensus       551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence            11 111     11256789999999999999999999999999987433  4556688999999999433      3678


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      ...+|.++.|++..+......+++.++++.|+-+..+..++...+.|+..+..|=
T Consensus       629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999988767788999988887764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.69  E-value=5.1e-15  Score=126.18  Aligned_cols=196  Identities=20%  Similarity=0.254  Sum_probs=165.0

Q ss_pred             HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 017651          113 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP  192 (368)
Q Consensus       113 ~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~  192 (368)
                      +++.+-+..|+.+|+..++|.++..+..++++.+. .+.+++.+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            35667789999999987669999999999999877 58889999999999999999999999999999999999998864


Q ss_pred             hhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 017651          193 RCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (368)
Q Consensus       193 ~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l  271 (368)
                       .+..+..  .++.+++....+ -+..++..++.+|.||+....  ....+.+.+|.++.+|.+++..++..++++|.||
T Consensus        87 -n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 -NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             -hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence             4455443  577777765444 478999999999999986532  2333467899999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHHHHHHHhhc
Q 017651          272 SDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVT  315 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~  315 (368)
                      +..+ +....++.++++..++.++... +.++...++..+.||..
T Consensus       162 S~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  162 SENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             ccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9874 5557888899999999999765 67889999999999964

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=2.2e-14  Score=121.85  Aligned_cols=281  Identities=14%  Similarity=0.161  Sum_probs=224.9

Q ss_pred             ccHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC-
Q 017651           74 ESLPAMVAGVW--SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-  150 (368)
Q Consensus        74 ~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-  150 (368)
                      +++..++..|.  .++.++....+..+++-+-.. .-+.+.+++.++++.+.+.|......++.++++|++.-+..++. 
T Consensus       145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi  223 (461)
T KOG4199|consen  145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI  223 (461)
T ss_pred             ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence            45667777775  566778888888888876654 66677899999999999888765545788999999999987532 


Q ss_pred             --------cchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch---h
Q 017651          151 --------ENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL---S  218 (368)
Q Consensus       151 --------~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~---~  218 (368)
                              .....+...|++..|+..+.. -++.+...++.+|+.|+..++ ++..+.+.|++..+++++..+.+.   .
T Consensus       224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~  302 (461)
T KOG4199|consen  224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRT  302 (461)
T ss_pred             eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence                    223567788888999998875 457788889999999998874 668899999999999999554433   4


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV--HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~  296 (368)
                      +.+.++..|..|+..+..+......++.+.++.++  +++||.|...++.+++.|+-..++....+++.|+-...++.++
T Consensus       303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk  382 (461)
T KOG4199|consen  303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK  382 (461)
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence            55788999999998877777777789999988877  4568999999999999999988999999999999999999995


Q ss_pred             C-C-CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          297 H-P-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       297 ~-~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      . | ...++..||+.|-||+..+.++...++. .+++.|+..-... ++.....|--+|..+..
T Consensus       383 ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~-h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  383 AHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKAN-HETCEAAAKAALRDLGC  444 (461)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence            3 3 3578999999999999988888887777 4566666666666 67777777777777654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=3.5e-15  Score=146.38  Aligned_cols=265  Identities=20%  Similarity=0.178  Sum_probs=221.3

Q ss_pred             HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC--------C---CHHHHHHHHHHHHHHhcCCCcchHHHhh-CC
Q 017651           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--------D---YPQLQFEAAWALTNIASGTSENTKVVID-HG  160 (368)
Q Consensus        93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~--------~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g  160 (368)
                      .|+..|-++ +.+ .++...+-+.|++..+-+||.-.        +   +-.+|.+|..+|+||+.++..++..+.. .|
T Consensus       317 aA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  317 AALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            566666666 332 67777788899988888777521        1   2469999999999999998888777665 58


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCC
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQP  237 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~  237 (368)
                      .+..++..|.+..+++.+..+.+|.||+=. +...+..+-+.|-+..|...-.....+..+..++.+||||+-+.  ...
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            999999999999999999999999999832 23466778888999999988767777888999999999999877  334


Q ss_pred             ChhhhhchHHHHHHhhcCC----CHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          238 PFDQVRPALPALAQLVHSN----DEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~----d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      .+-.+.|.+..|+.+|...    ...|+..+-++|.|++..   ..+..+.+.+++++..|+++|++.+..+..++|++|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            4556689999999999654    467888888888887643   455667788999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      .||...+++..+.+++.|.++.|..++.+. +..+...++-+|-|+...-
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999999 8999999999999998754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=4.7e-14  Score=119.83  Aligned_cols=274  Identities=12%  Similarity=0.146  Sum_probs=216.8

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  163 (368)
                      +++....++++.+|..+..+.     ..+.+..+...++.+|... ++.++......++..-|..++.+++.+++.++.+
T Consensus       118 ~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            456666677777776664432     3456777888999998643 2367888888888888888899999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          164 IFVKLLAS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       164 ~L~~lL~~-~~~~v~~~a~~~L~nla~~~~---------~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .+...|.. ....+...+.|++.-+..++.         .....+...|++..|+..+.-..++++...++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99976664 445688889999999975542         34456777888999999997777899999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcCC-CHH---HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc--CCCCcchHHHHH
Q 017651          234 KPQPPFDQVRPALPALAQLVHSN-DEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLIPAL  307 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~-d~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~a~  307 (368)
                      ..........|++..++.++.+. +..   ....++..|..|+-. ++....+++.|+.+.++.++  .+++|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            54434444579999999999774 333   456677777777754 55668999999999999987  456899999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCHHHh
Q 017651          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                      .+++-++--.++....+++.|+-...++.++. +....+++.|||.|.||+..+.++-
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~  409 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR  409 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999888888899999998888888864 4466899999999999998766654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.64  E-value=1.8e-13  Score=129.61  Aligned_cols=277  Identities=18%  Similarity=0.220  Sum_probs=221.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ..+.+...|.++++.++..+++.+.+++... ......+.+.++++.++.++.+++ ..+...|+.+|.+++.. +...+
T Consensus        78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~-~~~~~  154 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASH-PEGLE  154 (503)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCC-chhHH
Confidence            4677888999999999999999999997543 444566778999999999999999 89999999999999985 55666


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .++..+.++.|..++..+++.++-.+..++.+++..++.....+.+.|+++.++..+ .++|.-++.+++.++..|+..+
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~  233 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETP  233 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcCh
Confidence            788888899999999988888999999999999999999999999999999999999 5688999999999999999965


Q ss_pred             CCCChhhhhchHHHHHHhhcCC--CH---H-HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651          235 PQPPFDQVRPALPALAQLVHSN--DE---E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  308 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~--d~---~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~  308 (368)
                      ....+....++++.|..++...  |+   . .....+..+++++...+..+.... ..++..+...+.+.++..+..|+.
T Consensus       234 ~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~d  312 (503)
T PF10508_consen  234 HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFD  312 (503)
T ss_pred             hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHH
Confidence            5555566689999999999654  23   2 223344677788875333322111 245666777778899999999999


Q ss_pred             HHHHhhcCChHHHHHH-HHc-----CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          309 TVGNIVTGDDFQTQCI-ITY-----GALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       309 ~l~nl~~~~~~~~~~~-~~~-----g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++|.+++.. +....+ ...     .++..+.....++ ..++|..+.-+++++..
T Consensus       313 tlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  313 TLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILT  366 (503)
T ss_pred             HHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh
Confidence            999999644 455655 333     2455555666666 77899999999999965

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.64  E-value=1.3e-13  Score=130.49  Aligned_cols=272  Identities=18%  Similarity=0.197  Sum_probs=215.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      .++..+.+.+.+....++..|.+++...   ....+ ..++.+.|...|.+++ +.+|..+++.|.+++.++......+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~---~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSAL---SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhcc---CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            3777888888888888889999998643   22222 5667899999999999 99999999999999998777778888


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  237 (368)
                      +.++++.++.++.+++..+...|+.+|.+|+...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999887654 5677878888899988 5557778889999999999775332


Q ss_pred             Ch-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC--c---chH-HHHHHHH
Q 017651          238 PF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS--P---SVL-IPALRTV  310 (368)
Q Consensus       238 ~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~---~v~-~~a~~~l  310 (368)
                      .. ....|+++.++..+.++|.-++..++.++..|+. .+...+.+.+.|+++.|...+...+  +   .+. ...+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            22 2236799999999999999999999999999999 4556689999999999999995432  2   222 3334777


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      |+++...+....... ..++..+.+++.+. ++..+..|.-+++.|+..
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst  320 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST  320 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC
Confidence            888875443332121 24566677777787 888999999999999864

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.63  E-value=9.2e-15  Score=111.84  Aligned_cols=119  Identities=36%  Similarity=0.614  Sum_probs=111.1

Q ss_pred             HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651          112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (368)
Q Consensus       112 ~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~  191 (368)
                      .+++.|+++.|+++|.+++ +.++..++++|++++..+++....+++.|+++.++.+|.++++.++..++|+|+||+.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4668899999999999988 899999999999999988899999999999999999999999999999999999999998


Q ss_pred             hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       192 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+..+...|+++.++..+ .+.+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            88888889999999999999 67789999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.63  E-value=9.3e-14  Score=121.16  Aligned_cols=225  Identities=16%  Similarity=0.117  Sum_probs=150.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.|...|.+.+..++..|++.|..+-.            ..+++.+..++.+++ +.+|..|+|+|+.+-.....   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            46778888888888888888888876622            224667777777777 88888888888887652111   


Q ss_pred             HHhhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          155 VVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       155 ~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                         ...+++.|..+ +.++++.|+..|+.+||+++......     ...++..+...+ .+++..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11356777766 56778888888888888886433211     011344455555 56677888888888865532 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                               ...++.|+.+|.++++.|+..|+.+|+.+....+.         +++.|+..|.+.++.+|..|++.||.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     24778888888888888888888888887433222         356677777777888888888888775


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       314 ~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      -.  +         ..++.|+..|.++ +  ++..|+.+|+++.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig  249 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELG  249 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcC
Confidence            32  1         2355555555554 2  4555555555554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.56  E-value=2.3e-13  Score=116.07  Aligned_cols=196  Identities=21%  Similarity=0.247  Sum_probs=162.6

Q ss_pred             HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      +.+.+-++.|+.+|+. .++.+++.++.+++|.+..+ ..++.+.+.|+++.+..++ .++++.++..|++++.|++...
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCCh
Confidence            3566778999999985 68999999999999998775 6899999999999999999 8889999999999999999775


Q ss_pred             CCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          235 PQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      ++..  .+...++.+.+.+.+  .|.+++..++.+|.+|+..++.+  .++ .+.++.++.+|.+++..++..++++|.|
T Consensus        86 en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   86 ENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             hhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3332  234466666665433  37899999999999998664432  333 2468999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      |+...+ .+..++..+++..++.++..+...++-..+.+.+.||..+
T Consensus       161 LS~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  161 LSENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             hccCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            998554 6777999999999999999876788999999999999763

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.56  E-value=9.3e-14  Score=106.23  Aligned_cols=115  Identities=41%  Similarity=0.605  Sum_probs=108.1

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH
Q 017651          243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (368)
Q Consensus       243 ~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  322 (368)
                      .++++.+++++.+.+++++..++++|++++...++....+++.|+++.++.+|.++++.++..|+++++|++.+.+....
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            57899999999999999999999999999999888888899999999999999999999999999999999998887888


Q ss_pred             HHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       323 ~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .+.+.|+++.+..++.++ +..+++.++|+|.|++.
T Consensus        86 ~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            888999999999999998 89999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.55  E-value=3e-13  Score=117.94  Aligned_cols=204  Identities=14%  Similarity=0.114  Sum_probs=161.0

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      -++.|+.+|.+++ ..++..|+++|..+-.           ..+++.+..++.++++.++..++|+|+.|-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            3788999999988 8999999999997764           23678888899999999999999999998643211    


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                        ....++.|..++..+++..++..++.+|++++......    ....++.+...+.++++.|+..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11256777777658889999999999999997543222    12356667778888899999999999987752  2 


Q ss_pred             HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                              ..++.|+.+|.++++.+|..|+.+||.+..+++         .+++.|+.+|.+. ++.||.+|+|+|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    247889999999999999999999999954444         3466788889988 9999999999999863


Q ss_pred             cCCHHHhhh
Q 017651          358 AGNRDQIQV  366 (368)
Q Consensus       358 ~~~~~~i~~  366 (368)
                        ++..+..
T Consensus       221 --~~~av~~  227 (280)
T PRK09687        221 --DKRVLSV  227 (280)
T ss_pred             --ChhHHHH
Confidence              4444443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.55  E-value=3e-13  Score=127.35  Aligned_cols=239  Identities=21%  Similarity=0.252  Sum_probs=189.4

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CR  195 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~--~~  195 (368)
                      -+|..+.+|.+.+ +.+|..|+.-+..++.++.+.+..+-+.|+|+.|+.+|.+.+.+++.+|+|+|.||......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4788999999988 89999999999999999999999999999999999999999999999999999999976544  66


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC--------------CCHHHH
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS--------------NDEEVL  261 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~--------------~d~~v~  261 (368)
                      -.+.+.++++.++++|.+..|.++++.++.+|+||+..+ ......+...+++|...+-.              .+.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788899999999999977789999999999999999883 33333445566665554311              135788


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcC--------------------------------------------
Q 017651          262 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLG--------------------------------------------  296 (368)
Q Consensus       262 ~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~--------------------------------------------  296 (368)
                      ..+.+||.|++....+..+.+.+. |++..|+.++.                                            
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999998666555555443 44544443332                                            


Q ss_pred             ----------------------------------------------------------CCCcchHHHHHHHHHHhhcCCh
Q 017651          297 ----------------------------------------------------------HPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       297 ----------------------------------------------------------~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                                                                                +.++.+.+.++++|.|++.+..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                                      1112235778899999987653


Q ss_pred             ----HHHHHH-HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          319 ----FQTQCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       319 ----~~~~~~-~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                          .....+ ..+.+++.++.+|..+ ++.+.+.++.+|.|++.+
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC
Confidence                333444 5678999999999999 999999999999999975

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.52  E-value=4e-15  Score=107.28  Aligned_cols=90  Identities=47%  Similarity=0.615  Sum_probs=60.0

Q ss_pred             cchHHHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCC--cchhhhhhhccHHHHHHhh
Q 017651            7 ARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPA--SNLNLQTKLESLPAMVAGV   83 (368)
Q Consensus         7 ~~~~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~l   83 (368)
                      +..+.|++.||+ |++++++|+||++..++|||+||||.|.|||++....+...+....  ...........++.++..+
T Consensus         4 ~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v   83 (97)
T PF01749_consen    4 KKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGV   83 (97)
T ss_dssp             ---GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHH
T ss_pred             cCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhc
Confidence            456789999999 6999999999999999999999999999999986544332211000  0000111224688999999


Q ss_pred             cCCCHHHHHHHHH
Q 017651           84 WSDDSSLQLEATT   96 (368)
Q Consensus        84 ~~~~~~~~~~a~~   96 (368)
                      .|+|+..++.|+.
T Consensus        84 ~S~d~~~ql~Atq   96 (97)
T PF01749_consen   84 NSDDPEVQLEATQ   96 (97)
T ss_dssp             TSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHhhC
Confidence            9999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.52  E-value=1.2e-12  Score=114.87  Aligned_cols=270  Identities=16%  Similarity=0.107  Sum_probs=184.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCC--CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651           86 DDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (368)
Q Consensus        86 ~~~~~~~~a~~~l~~l~s~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  163 (368)
                      .+..+...+..++.+....+  ++.....-++.+++..|.+..++++ .++..++.++|+|+|.++.+.+..+.+.|+-.
T Consensus        54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            34445556666666664221  1222333456788888888888887 79999999999999999999999999999988


Q ss_pred             HHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhH----------------
Q 017651          164 IFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSM----------------  219 (368)
Q Consensus       164 ~L~~lL~~-------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~----------------  219 (368)
                      .+++.|+.       .+.+....++..|.|..-++..++..+.+.|+++.|...+.-+ .+...                
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            88888764       2346777888999999999999999999999999887766311 11111                


Q ss_pred             ----------------------------HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CC-------HHHHHH
Q 017651          220 ----------------------------LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-ND-------EEVLTD  263 (368)
Q Consensus       220 ----------------------------~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-~d-------~~v~~~  263 (368)
                                                  .+.+...+...+.++...-.....|.+..+.++++. .+       -.....
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence                                        111122222222221111111113444444444432 11       122334


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC--
Q 017651          264 ACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS--  340 (368)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~--  340 (368)
                      ++....-+..++ +..+.+...+ +++.+..++.+++......+..+|||++...+ .+..+++.|++..|+.+|...  
T Consensus       293 ~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~  370 (604)
T KOG4500|consen  293 IAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKD  370 (604)
T ss_pred             hhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcC
Confidence            444444555554 4446666666 89999999999999999999999999998665 677799999999999998642  


Q ss_pred             --CCccHHHHHHHHHHHHhc
Q 017651          341 --HKKSIKKEACWTISNITA  358 (368)
Q Consensus       341 --~~~~v~~~a~~~l~nl~~  358 (368)
                        .+..++..++.+|.|++-
T Consensus       371 vdgnV~~qhA~lsALRnl~I  390 (604)
T KOG4500|consen  371 VDGNVERQHACLSALRNLMI  390 (604)
T ss_pred             CCccchhHHHHHHHHHhccc
Confidence              156788889999999874

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.48  E-value=1.5e-11  Score=111.75  Aligned_cols=282  Identities=16%  Similarity=0.156  Sum_probs=207.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ....++..|.++|..+...|+..+..+++.. ..........-+++.+...|++++....+.-|+.+|..+.. .++.+.
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~  179 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRF  179 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHH
Confidence            3567778888889999999999999998754 22211111112455677777765446888889999999998 478888


Q ss_pred             HHhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          155 VVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      .+.+.++++.|+.+|+.  .+..++..++.+++-++.+.+ ..+.....+.++.++.++....-+.+.+-++.+|.|+..
T Consensus       180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            89999999999999976  256889999999999998765 456667788999999999888899999999999999998


Q ss_pred             CCC----CCC--hhhhhchHHHHHHhhcC---CCHHHHHHHHHHHH-------HhhcC--------------C-------
Q 017651          233 GKP----QPP--FDQVRPALPALAQLVHS---NDEEVLTDACWALS-------YLSDG--------------T-------  275 (368)
Q Consensus       233 ~~~----~~~--~~~~~~~~~~L~~lL~~---~d~~v~~~a~~~l~-------~l~~~--------------~-------  275 (368)
                      ...    ...  ...+...++.++..|..   .|+++..+.-..--       .+++.              +       
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            541    111  12233345555555543   36665444222211       11210              0       


Q ss_pred             --hHHHHHHHHc--CChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHH
Q 017651          276 --NDKIQAVIEA--GVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEAC  350 (368)
Q Consensus       276 --~~~~~~~~~~--~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~  350 (368)
                        .+....+-+.  .++..|+.+| .+.++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|.
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL  417 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEAL  417 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence              1233344443  4578899999 466788899999999999999988888777889999999999999 999999999


Q ss_pred             HHHHHHhcCC
Q 017651          351 WTISNITAGN  360 (368)
Q Consensus       351 ~~l~nl~~~~  360 (368)
                      .|+.-+..++
T Consensus       418 ~avQklm~~~  427 (429)
T cd00256         418 LAVQKLMVHN  427 (429)
T ss_pred             HHHHHHHHhc
Confidence            9999887654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.43  E-value=6.1e-11  Score=120.30  Aligned_cols=235  Identities=19%  Similarity=0.168  Sum_probs=151.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.|+..|.++++.++..|+..|.++..            .+.++.|+.+|.+++ +.+|..|+.+|..+....+    
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC----
Confidence            46889999999999999999999987732            235788999998887 8999999999988753211    


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh------------hhHHH----HHhcCChHHHHHHhccccchh
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP------------RCRDL----VLSQGALIPLLAQLNERAKLS  218 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~------------~~~~~----i~~~~~i~~l~~~l~~~~~~~  218 (368)
                            ..+.|...|.++++.++..++.+|+.+....+            ..|..    +...+..+.|+..+ .+++..
T Consensus       685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~  757 (897)
T PRK13800        685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENRE  757 (897)
T ss_pred             ------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHH
Confidence                  12344455555555566555555554421110            01100    00111223444455 566666


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  298 (368)
                      ++..++.+|..+....+        ..++.|..+++++|+.|+..++.+|+.+....          .+...+...|.++
T Consensus       758 VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~  819 (897)
T PRK13800        758 VRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS  819 (897)
T ss_pred             HHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC
Confidence            77667766666654321        23566777777777888888888887775321          1124466677777


Q ss_pred             CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651          299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       299 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                      ++.+|..|+.+|+.+...           ..++.|..+|.++ ++.||+.|+++|+.+ .+++...
T Consensus       820 d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~-~~~~~a~  872 (897)
T PRK13800        820 AWQVRQGAARALAGAAAD-----------VAVPALVEALTDP-HLDVRKAAVLALTRW-PGDPAAR  872 (897)
T ss_pred             ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCC-CHHHHHHHHHHHhcc-CCCHHHH
Confidence            788888888888776421           2357788888888 889999999999887 3444433

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.38  E-value=2.6e-11  Score=119.86  Aligned_cols=293  Identities=18%  Similarity=0.187  Sum_probs=214.2

Q ss_pred             hhhccHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHH----------HhhcC------CCC
Q 017651           71 TKLESLPAMVAGVWSD---DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV----------EFLMR------EDY  131 (368)
Q Consensus        71 ~~~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv----------~lL~~------~~~  131 (368)
                      ...+.++.|++.+...   +.+.+..|-.+|.+++..+ .+....-.+..+++.|=          .++..      +..
T Consensus       232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~  310 (2195)
T KOG2122|consen  232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS  310 (2195)
T ss_pred             HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            3457899999999854   4577888888999998764 22211111122222221          12211      111


Q ss_pred             HHHHH-HHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651          132 PQLQF-EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAGDSPRCRDLV  198 (368)
Q Consensus       132 ~~v~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~v~~~a~~~L~nla~~~~~~~~~i  198 (368)
                      ..-+. .|+..|..++. +++.+..+.+.|++..+-.|+.-            .+..++..++.+|.||...+...+..+
T Consensus       311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L  389 (2195)
T KOG2122|consen  311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL  389 (2195)
T ss_pred             cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence            34555 67778888888 48999999999999988887752            235889999999999997665555544


Q ss_pred             H-hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh--hchHHHHHHh-hcCCCHHHHHHHHHHHHHhhcC
Q 017651          199 L-SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV--RPALPALAQL-VHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       199 ~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~L~~l-L~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      . ..|++..++..| ....+++....+.+|.||+-.-.......+  .+.+-.|... ++...+..+..++.+|+||+.+
T Consensus       390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH  468 (2195)
T ss_pred             hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence            4 568899999999 666778888999999999976433322222  3445555543 4555667888999999999988


Q ss_pred             ChHHHHHHHHc-CChHHHHHhcCCC----CcchHHHHHHHHHHhh---cCChHHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651          275 TNDKIQAVIEA-GVCPRLVELLGHP----SPSVLIPALRTVGNIV---TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK  346 (368)
Q Consensus       275 ~~~~~~~~~~~-~~~~~L~~lL~~~----~~~v~~~a~~~l~nl~---~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~  346 (368)
                      ..+....|..- |.+.+|+..|...    ...+.+.|-++|-|+.   +.++...+.+.+++.|..|++.|++. +..+.
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiV  547 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIV  547 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEe
Confidence            77776677664 8999999999654    3567788888888764   45667888899999999999999999 99999


Q ss_pred             HHHHHHHHHHhcCCHHHhhhc
Q 017651          347 KEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       347 ~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      -.+|.+|.||.+-+++.-+++
T Consensus       548 SNaCGTLWNLSAR~p~DQq~L  568 (2195)
T KOG2122|consen  548 SNACGTLWNLSARSPEDQQML  568 (2195)
T ss_pred             ecchhhhhhhhcCCHHHHHHH
Confidence            999999999999888776654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=5.8e-12  Score=115.92  Aligned_cols=264  Identities=19%  Similarity=0.227  Sum_probs=181.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HH-HH---hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EE-VI---QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~-~i---~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~  148 (368)
                      +.+|.|.++|.+++...+.-|..+|.+++...  ... +. ..   -.-.+|.|+++.++++ |.+|..|+.|+.-+.-.
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~  204 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII  204 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence            35899999999999888999999999996532  111 10 00   0125899999999998 99999999999887663


Q ss_pred             CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhccccchhHHHHHHHH
Q 017651          149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLNERAKLSMLRNATWT  226 (368)
Q Consensus       149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~  226 (368)
                      .++....-++ ..+..+..+-.+++++||.+.+.+|.-|....+.   .+..  .++++.++..- ++.|+++.-.||..
T Consensus       205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~t-qd~dE~VALEACEF  279 (885)
T KOG2023|consen  205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRT-QDVDENVALEACEF  279 (885)
T ss_pred             CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHc-cCcchhHHHHHHHH
Confidence            3322222222 3567777777889999999999999999866543   2222  13455666655 77788999999999


Q ss_pred             HHHhhcCCCCCCh---hhhhchHHHHHHhhcCCC----------------------------------------------
Q 017651          227 LSNFCRGKPQPPF---DQVRPALPALAQLVHSND----------------------------------------------  257 (368)
Q Consensus       227 L~~l~~~~~~~~~---~~~~~~~~~L~~lL~~~d----------------------------------------------  257 (368)
                      ...++..+ ....   ..+..++|.|+.-+..++                                              
T Consensus       280 wla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD  358 (885)
T KOG2023|consen  280 WLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD  358 (885)
T ss_pred             HHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence            99999875 2211   223556676665332111                                              


Q ss_pred             ----------HHHHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH
Q 017651          258 ----------EEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC  323 (368)
Q Consensus       258 ----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~  323 (368)
                                +.++...+.+|.-|+.        +....+    +|.|-+.|.++++.+++.++.++|.|+.|+-..   
T Consensus       359 e~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---  427 (885)
T KOG2023|consen  359 EDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---  427 (885)
T ss_pred             ccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---
Confidence                      1233333333333332        222233    455555667889999999999999999876432   


Q ss_pred             HHHc--CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          324 IITY--GALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       324 ~~~~--g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++.+  .++|.|+.+|.+. .+-||.-+||+|+.++.
T Consensus       428 ~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~  463 (885)
T KOG2023|consen  428 FVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSK  463 (885)
T ss_pred             cccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhh
Confidence            3332  4789999999999 99999999999999874

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.7e-10  Score=100.16  Aligned_cols=187  Identities=21%  Similarity=0.216  Sum_probs=155.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  163 (368)
                      .+.+.+.+..|+..|..++.  +-++...++..|+...++.++++++ +.+|..|+|+|+.++..||..+..+++.|+++
T Consensus        93 ~s~~le~ke~ald~Le~lve--~iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~  169 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE--DIDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS  169 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH--hhhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence            45678889999999998874  3677788999999999999999998 89999999999999999999999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651          164 IFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (368)
Q Consensus       164 ~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~  241 (368)
                      .|+..+.+ ++..++..|+++++++..+.+...+.+...++...|...+... .+..+++.++..+..|...........
T Consensus       170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~  249 (342)
T KOG2160|consen  170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA  249 (342)
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999986 4567789999999999999998999999999999999999543 688999999999999998763332222


Q ss_pred             h-hchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651          242 V-RPALPALAQLVHSNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       242 ~-~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~  273 (368)
                      . .++...+..+..+.+.++...++.++..+..
T Consensus       250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            2 3444456666667778888888777766654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=3.1e-10  Score=111.10  Aligned_cols=280  Identities=20%  Similarity=0.195  Sum_probs=191.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++-|++..+|+++..|..|+..|..+...-.+.....+  ..+.+.|.+.+.+++.+ +|..|+++++.++...+..+.
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence            467778888899999999999999877543212222111  12467777888888855 999999999999875543333


Q ss_pred             HHhhC-CChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHH
Q 017651          155 VVIDH-GAVPIFVKLL----ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLS  228 (368)
Q Consensus       155 ~~~~~-g~i~~L~~lL----~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~  228 (368)
                      ..-.. ..+|.++..+    ..++......++.+|..++...|.+-...+.. ++.-.+.+.... -+..++..|+.+|.
T Consensus       196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~iv  274 (1075)
T KOG2171|consen  196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLV  274 (1075)
T ss_pred             HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            32221 3456555544    45666677788888888887665532222211 233333333211 14444444444444


Q ss_pred             HhhcC------------------------------------------------------------CCCCChhhhhchHHH
Q 017651          229 NFCRG------------------------------------------------------------KPQPPFDQVRPALPA  248 (368)
Q Consensus       229 ~l~~~------------------------------------------------------------~~~~~~~~~~~~~~~  248 (368)
                      .+++.                                                            -+..  .....+++.
T Consensus       275 s~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~  352 (1075)
T KOG2171|consen  275 SLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEA  352 (1075)
T ss_pred             HHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHH
Confidence            44333                                                            1100  011234556


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG  328 (368)
Q Consensus       249 L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g  328 (368)
                      +-.+|++.++.-+..++.+|+.++.+..+.....+. .+++.++..|.+++|.||..||.++|.+++.-....+.-....
T Consensus       353 l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~  431 (1075)
T KOG2171|consen  353 LEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER  431 (1075)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence            666778899999999999999999998877665443 6888999999999999999999999999987766677677778


Q ss_pred             ChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651          329 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       329 ~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      +++.|+..+.+.+++.++..|+-++-|+..+++
T Consensus       432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~  464 (1075)
T KOG2171|consen  432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECD  464 (1075)
T ss_pred             ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence            899999999998889999999999999998543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.3e-10  Score=100.77  Aligned_cols=184  Identities=18%  Similarity=0.213  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL  211 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l  211 (368)
                      ++-+..|..-|..++. +-++...++..|+...++.++++++..+|+.|+|+++..+.++|..+..+++.|+++.|+..+
T Consensus        97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            7788889888988888 578889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651          212 NERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC  288 (368)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~  288 (368)
                      ..+++..++..|+++++.+.++.+. .......++...|.+.+++  .+...+..++..++++........+.+...++.
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~  255 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ  255 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence            8777888999999999999999743 3333345678999999988  567889999999999998766665555555666


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          289 PRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      ..+..+....+..+.+.++.++..+...
T Consensus       256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  256 RVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            6677777777888888888888777653

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.32  E-value=4e-10  Score=99.24  Aligned_cols=281  Identities=13%  Similarity=0.076  Sum_probs=199.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC------CCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE------DYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~------~~~~v~~~a~~~L~~l~~  147 (368)
                      +.+..|.+...|++.++-.+..++|.+++..+ ++.+..+.+.|+-..+++.|+..      .+.+.-.-+...|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45777788888888999999999999998765 88889999999977777777641      224666777889999999


Q ss_pred             CCCcchHHHhhCCChHHHHHhhCC--CCHHHH--------------------------------------------HHHH
Q 017651          148 GTSENTKVVIDHGAVPIFVKLLAS--PSDDVR--------------------------------------------EQAV  181 (368)
Q Consensus       148 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~--------------------------------------------~~a~  181 (368)
                      ++.+.+..+.+.|+++.|..++--  .+...-                                            +.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999987766532  222222                                            3333


Q ss_pred             HHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-------chhHHHHHHHHHHHhhcCCCCCChhhhhc-hHHHHHHhh
Q 017651          182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLV  253 (368)
Q Consensus       182 ~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~L~~lL  253 (368)
                      ..|...+.++ ..+-.+.+.|.+..+++++.+.+       .......++....-+..++..-......+ ++..+..++
T Consensus       246 eila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence            3333333332 23334456666677777664322       12233344444444444432222222223 788889999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-----CCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIITYG  328 (368)
Q Consensus       254 ~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g  328 (368)
                      .++|...+..+.-+|+|++..++.. -.+++.|++..|+..|.     .++.+.+..++.++.|++---+ ....++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccc
Confidence            9999999999999999999985544 67889999999999983     2456788999999999976443 456788999


Q ss_pred             ChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          329 ALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       329 ~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      +.+.++..++.. .|.+.-.-..++.-+..+
T Consensus       403 vteaIL~~lk~~-~ppv~fkllgTlrM~~d~  432 (604)
T KOG4500|consen  403 VTEAILLQLKLA-SPPVTFKLLGTLRMIRDS  432 (604)
T ss_pred             hHHHHHHHHHhc-CCcchHHHHHHHHHHHhc
Confidence            999999999988 777776666666655443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.32  E-value=4.8e-10  Score=98.68  Aligned_cols=281  Identities=16%  Similarity=0.132  Sum_probs=204.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ....+.++..++..+...+.+.+.++.+.. +.........-....|-..+.+..+++...-|++||..+... ++.+..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence            456777888888877777888888886643 222211111112334455555544468888899999999985 778888


Q ss_pred             HhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          156 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ++..+++..++..+.+  .+..++.+.+.|++-|+.+.+.. +.+...+.|+.|..+++.+..+.+.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888899999998843  45789999999999999886654 66678889999999998888999999999999999987


Q ss_pred             CCCCCh------hhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHh-------hcC--------------C--------
Q 017651          234 KPQPPF------DQVRPALPALAQLVH---SNDEEVLTDACWALSYL-------SDG--------------T--------  275 (368)
Q Consensus       234 ~~~~~~------~~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~~l-------~~~--------------~--------  275 (368)
                      .+....      ..+.+-++..++.|.   -+|+++..+.-..-..|       ++.              +        
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            643222      122344455555553   34666655443333222       111              0        


Q ss_pred             -hHHHHHHHHc--CChHHHHHhcCC-CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHH
Q 017651          276 -NDKIQAVIEA--GVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW  351 (368)
Q Consensus       276 -~~~~~~~~~~--~~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~  351 (368)
                       .+....+.+.  .++..|+.+|.. .+|.+..-||.-||..+...|+....+.+.|+=+.++++|.++ +++||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence             1223333433  578889999954 4689999999999999999999999888999999999999999 9999999999


Q ss_pred             HHHHHhcCC
Q 017651          352 TISNITAGN  360 (368)
Q Consensus       352 ~l~nl~~~~  360 (368)
                      |+..+..++
T Consensus       432 avQ~lm~~~  440 (442)
T KOG2759|consen  432 AVQKLMVHN  440 (442)
T ss_pred             HHHHHHhhc
Confidence            998877654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=1.4e-09  Score=97.11  Aligned_cols=278  Identities=16%  Similarity=0.180  Sum_probs=192.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+.-|++.|..++.++.......|.++ |.- .++...+.+.|++..|++++...+ ++++..++..|.|++.+ ...+.
T Consensus       305 iV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr~  380 (791)
T KOG1222|consen  305 IVAMLVKALDRSNSSLLTLVIKFLKKL-SIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLRP  380 (791)
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHh-hhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-ccccH
Confidence            467889999999988888888888877 433 567778889999999999999998 99999999999999995 77889


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--------------------------------
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--------------------------------  202 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--------------------------------  202 (368)
                      ..+..|.+|.+..+|.++..  ...|+..|..++.++. ++..+....                                
T Consensus       381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            99999999999999986422  1122222222222211 111111111                                


Q ss_pred             -----------------------------------------------ChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 017651          203 -----------------------------------------------ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-  234 (368)
Q Consensus       203 -----------------------------------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-  234 (368)
                                                                     .+..|...+..+.++.+...+++++.||.-.+ 
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence                                                           12223333333445555666667777766432 


Q ss_pred             CCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHH
Q 017651          235 PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTV  310 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l  310 (368)
                      +-........++|.+-..|+..  ..+++-...-+++-++.. .+....+..+|+++.++++|+.  .+.+.....+.+.
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF  616 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF  616 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence            1112222357888888877653  345666677777777754 4455667778999999999954  4677788888888


Q ss_pred             HHhhcCChHHHHHHHH-cCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          311 GNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~-~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      ..+..+.. ....++. ...-.++++++.+. +..+|+-+-.+|--++..+.+
T Consensus       617 ~Q~l~He~-tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~d~E  667 (791)
T KOG1222|consen  617 LQFLKHEL-TRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEHDKE  667 (791)
T ss_pred             HHHHHHHH-HHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHH
Confidence            88887633 4444544 45667899999988 899999998898888765554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.28  E-value=6.8e-10  Score=112.73  Aligned_cols=229  Identities=19%  Similarity=0.179  Sum_probs=153.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--  151 (368)
                      +.++.|+..|.++++.++..|+..|..+....  +         ..+.|...|.+++ +.+|..|+.+|..+..++..  
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--~---------~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~~~~~l  719 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL--P---------PAPALRDHLGSPD-PVVRAAALDVLRALRAGDAALF  719 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--C---------chHHHHHHhcCCC-HHHHHHHHHHHHhhccCCHHHH
Confidence            35788999999999999999999988774211  0         0123444444443 45555555444443211000  


Q ss_pred             ----------ch----HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch
Q 017651          152 ----------NT----KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL  217 (368)
Q Consensus       152 ----------~~----~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~  217 (368)
                                .+    ..+...+..+.|..++.+++..|+..++.+|+.+....+         ..++.|..++ .++++
T Consensus       720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll-~D~d~  789 (897)
T PRK13800        720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALT-GDPDP  789 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHh-cCCCH
Confidence                      00    000000122345556666666666666666666644322         1367788888 78889


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC
Q 017651          218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH  297 (368)
Q Consensus       218 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  297 (368)
                      .++..++.+|..+....         ...+.+...|.++++.|+..|+++|+.+...           ..++.|+.+|.+
T Consensus       790 ~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D  849 (897)
T PRK13800        790 LVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTD  849 (897)
T ss_pred             HHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcC
Confidence            99999999999885431         2345688888999999999999999887532           236889999999


Q ss_pred             CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          298 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       298 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      +++.+|..|+++|+.+. +++.         ..+.|...+++. +..||++|..+|..
T Consensus       850 ~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~~  896 (897)
T PRK13800        850 PHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS-DADVRAYARRALAH  896 (897)
T ss_pred             CCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence            99999999999999972 2332         356677888888 99999999999863

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1.1e-09  Score=105.67  Aligned_cols=267  Identities=18%  Similarity=0.233  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (368)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  168 (368)
                      ..|+.|........+.++.|+-+       +|.+++.|-+   .--|..|+..|+..-.--+-.....+.-|++|++++|
T Consensus       451 teQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL  520 (1387)
T KOG1517|consen  451 TEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL  520 (1387)
T ss_pred             HHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence            45666776666666666666665       5666666654   3458889999999887657777777888999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCCCChhhh-hch
Q 017651          169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQPPFDQV-RPA  245 (368)
Q Consensus       169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~  245 (368)
                      |+++-.+++...+++...|..-++.++..+++.++-..+++.|..++  +++-+..+++.|+.++++.+..+.... .++
T Consensus       521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l  600 (1387)
T KOG1517|consen  521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL  600 (1387)
T ss_pred             hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence            99999999999999999997776888888888888888888885423  557788899999999998755444444 567


Q ss_pred             HHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC----ChHH
Q 017651          246 LPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDFQ  320 (368)
Q Consensus       246 ~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~----~~~~  320 (368)
                      +...+..|.++ .+-++..+|-+|+.|=.+.++..=.-...+..+.|..+|+++-+++|..|+.+||.+..+    .+++
T Consensus       601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~  680 (1387)
T KOG1517|consen  601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ  680 (1387)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence            78888888775 577899999999999876655433345567899999999999999999999999999875    3444


Q ss_pred             HHHH------------HHcCCh---HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651          321 TQCI------------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV  366 (368)
Q Consensus       321 ~~~~------------~~~g~l---~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~  366 (368)
                      ...+            ++..+.   ..++.+++++ .+-++++.+-+|+.++.|...++.-
T Consensus       681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~  740 (1387)
T KOG1517|consen  681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKV  740 (1387)
T ss_pred             hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHH
Confidence            4333            222122   3677788888 9999999999999999998877654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.20  E-value=1.5e-09  Score=100.48  Aligned_cols=279  Identities=13%  Similarity=0.117  Sum_probs=183.2

Q ss_pred             CCHHHHHHHHHHHH---HhhcCCCCCch----HHHHhcCcHH--HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc----
Q 017651           86 DDSSLQLEATTQFR---KLLSIERSPPI----EEVIQSGVVP--RFVEFLMREDYPQLQFEAAWALTNIASGTSEN----  152 (368)
Q Consensus        86 ~~~~~~~~a~~~l~---~l~s~~~~~~~----~~~i~~g~i~--~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~----  152 (368)
                      .....+..|+.+++   +++..+ +...    ....+.|+.+  .+-+++++++ +..+..++.++..+...+...    
T Consensus       193 ~s~~~RlaaL~~~sr~~~iL~Nn-~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~-~s~~l~sl~cl~~~~~~s~~~d~l~  270 (678)
T KOG1293|consen  193 LSSKLRLAALLCLSRGDRILRNN-PLGSMFLLGLLKDKGVNIRCVVTRLLKDPD-FSERLRSLECLVPYLRKSFNYDPLP  270 (678)
T ss_pred             hhHHHHHHHHHHhhccceeeecC-chhHHHHHHHHhccccchhhhhhhhhhCCC-ccHHHHHHHHHHHHHhccccccccc
Confidence            35678888899998   666543 2221    2344667766  5667788887 788899999999988754110    


Q ss_pred             -hHHHhhCC----------------Ch-----HHH--------HHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          153 -TKVVIDHG----------------AV-----PIF--------VKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       153 -~~~~~~~g----------------~i-----~~L--------~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                       ...+.+.|                ++     ...        ..-+..     ...++...-+.+-..++...+.++..
T Consensus       271 ~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i  350 (678)
T KOG1293|consen  271 WWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLI  350 (678)
T ss_pred             cceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHH
Confidence             00111111                10     000        000100     00111222333444445555555544


Q ss_pred             HHhcCChHHH---------------------HHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcC
Q 017651          198 VLSQGALIPL---------------------LAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHS  255 (368)
Q Consensus       198 i~~~~~i~~l---------------------~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~lL~~  255 (368)
                      ++....++.-                     ...+....|..+...+|-++-++++.-..- .......+...|++++..
T Consensus       351 ~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d  430 (678)
T KOG1293|consen  351 LLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD  430 (678)
T ss_pred             HhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC
Confidence            4432221111                     011113346778888888888887754111 112224577889999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HH
Q 017651          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY-LL  334 (368)
Q Consensus       256 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~-l~  334 (368)
                      ++..|...++++|+|++..-.+....++..|+++.+...+.++++.++..++|++.++..++++..+......+-.. +.
T Consensus       431 p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~  510 (678)
T KOG1293|consen  431 PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLIL  510 (678)
T ss_pred             cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHH
Confidence            99999999999999999776666788999999999999999999999999999999999999877776665555444 45


Q ss_pred             HhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       335 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      .+..++ ++.|++.+.-.+.|++.++.+-++.+
T Consensus       511 ~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfl  542 (678)
T KOG1293|consen  511 DLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFL  542 (678)
T ss_pred             HHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence            566666 99999999999999999988887765

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.19  E-value=5.3e-10  Score=107.95  Aligned_cols=254  Identities=20%  Similarity=0.217  Sum_probs=145.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.+++.+.+++...+.-+.-.+..+...  ++..-.+    +++.+.+-|.+++ +.++..|+++|++++.  ++...
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~  113 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE  113 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence            567777777777777777777777666542  2221112    4666777777777 7888888888888774  33322


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .     .++.+..++.++++.||..|+.++..+....|..   +... .++.+..++ .++++.++..|+.++..+ ...
T Consensus       114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~  182 (526)
T PF01602_consen  114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN  182 (526)
T ss_dssp             H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred             H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence            2     3567777777888888888888888887665542   2222 466777777 677777888888777777 221


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      +..........++.|..++...++.++..++.++..++...+.....   ..+++.+..++.+.++.+...|+.++..+.
T Consensus       183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            11101333445555555556667777777777777766554433211   223444444444444445555555544444


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ...+      .-..+++.|..++.++ ++++|-.++.+|..++.
T Consensus       260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCC
T ss_pred             cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhc
Confidence            3222      1113344444455444 44455555555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.16  E-value=8.6e-10  Score=106.53  Aligned_cols=250  Identities=17%  Similarity=0.207  Sum_probs=177.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..+.+.+.++++..+-.|++++.++..   .+-.+     .+++.+.+++.+++ |.+|..|+-++..+...+++...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAE-----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHH-----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhh-----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            46777888889999999999999998852   11222     25888999999998 99999999999999986555322


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHHhh
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~  231 (368)
                         .. .++.+..+|.++++.++..|+.++..+ ...+....     ..++.+...|.   ...++-.+..++.++..++
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence               22 589999999999999999999999999 22221101     23444444432   6678888888888888777


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (368)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  311 (368)
                      ...+.....  ..+++.+..++++.++.|...++.++.++.....      .-..+++.+..+|.++++.++..++..|.
T Consensus       221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS  292 (526)
T ss_dssp             SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence            553211100  4577888888888888899999988888876533      22346788888888888889999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhC-CCCCccHHHHHHHHHHHHhc
Q 017651          312 NIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       312 nl~~~~~~~~~~~~~~g~l~~l~~ll~-~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .++...+..    +. + ....+..+. ++ +..+|+.+.-+|.+++.
T Consensus       293 ~l~~~~~~~----v~-~-~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  293 QLAQSNPPA----VF-N-QSLILFFLLYDD-DPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HHCCHCHHH----HG-T-HHHHHHHHHCSS-SHHHHHHHHHHHHHH--
T ss_pred             Hhhcccchh----hh-h-hhhhhheecCCC-ChhHHHHHHHHHhhccc
Confidence            988766222    22 2 222233444 55 78888888888888874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.15  E-value=9.5e-09  Score=95.24  Aligned_cols=113  Identities=19%  Similarity=0.169  Sum_probs=93.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        79 l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      ++..+.+.+++....|..-..+++.+. +++...+++.|.++.++.++...+ .++.+.+.+.++...+.+.......++
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL   92 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL   92 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence            344555778888888998888888775 566668999999999999997654 267777777788888888888889999


Q ss_pred             hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCh
Q 017651          158 DHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSP  192 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~  192 (368)
                      +.+.++.|+++|.+++ ..+++.++.++.+|...++
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~  128 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK  128 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence            9999999999999988 8999999999999986654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.4e-09  Score=102.04  Aligned_cols=278  Identities=19%  Similarity=0.197  Sum_probs=196.4

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           76 LPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        76 i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +..++.....  ++..+++.|+.+|.+-+...+...-.+.-..-++...++...+++ .+++..|..||..|.+-.-+.-
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m  252 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFM  252 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444442  456788888888887664331111112222334566677777777 8999999999999998767777


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh----H-----------HHH---HhcCChHHHHHHhcc-c
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC----R-----------DLV---LSQGALIPLLAQLNE-R  214 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~----~-----------~~i---~~~~~i~~l~~~l~~-~  214 (368)
                      ...+....++.-+.-+++++++|.-+++...+++|...-..    .           ..+   .-.+.+|.|+++|.+ +
T Consensus       253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd  332 (859)
T KOG1241|consen  253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD  332 (859)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence            77777677788888889999999999999999988432110    0           000   112467888888854 2


Q ss_pred             -----cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017651          215 -----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (368)
Q Consensus       215 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  289 (368)
                           ++...-..+..||.-+++...+   ..+..++|.+-+-++++|+.-+..+.-+++.+..+++.....-+-.+.++
T Consensus       333 e~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  333 EDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             CCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence                 1334555666666666654322   12235777777788899999999999999999999876666666678999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC-IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~-~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      .++.++.+++-.++..+.|++|.++...++.+.. ....+.++.++.-|.+  .|.+...+||++.+++.+
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEA  478 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHH
Confidence            9999999888889999999999999877643332 2233567777777765  589999999999999954

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.13  E-value=2.3e-09  Score=95.88  Aligned_cols=223  Identities=19%  Similarity=0.254  Sum_probs=155.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHh------cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ------SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT  149 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~------~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~  149 (368)
                      +-.+++.+ +.+.+.....+..+..+++.. +...+.+..      ......|+.++.++| ..++..|+.+|+.+....
T Consensus        60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             --HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcC
Confidence            44555555 677888889999999998865 344444443      236788899888887 899999999999998865


Q ss_pred             CcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh------ccccchhH
Q 017651          150 SENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL------NERAKLSM  219 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l------~~~~~~~~  219 (368)
                      +....... .+.++.+++++.+    ++.+++..|+.+|.++... +.+|..+.+.|+++.+..++      ....+.++
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            55444322 3566777777664    4567789999999999966 57899999999999999999      45568899


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhcCC
Q 017651          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGH  297 (368)
Q Consensus       220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~  297 (368)
                      +..++.|++.|+..++........+++|.|+++++.. .++|..-++.++.|++..+.+ ....++..|+++.+-.+...
T Consensus       215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence            9999999999998754333333456999999999754 689999999999999987654 66778888877776666543


Q ss_pred             --CCcchH
Q 017651          298 --PSPSVL  303 (368)
Q Consensus       298 --~~~~v~  303 (368)
                        .|+++.
T Consensus       295 k~~Dedl~  302 (312)
T PF03224_consen  295 KWSDEDLT  302 (312)
T ss_dssp             --SSHHHH
T ss_pred             CCCCHHHH
Confidence              344443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=5.8e-08  Score=91.75  Aligned_cols=284  Identities=19%  Similarity=0.221  Sum_probs=214.4

Q ss_pred             ccHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCC-
Q 017651           74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTS-  150 (368)
Q Consensus        74 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~-  150 (368)
                      +.|+.|+.-+.+.. .+.+..|++.|..+..    .. +..+-..+++.|++.|..+ .++++...++..+.++..... 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----kY-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KY-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----HH-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            57999999998655 7889999999987743    22 3334444588999999753 348999999999999887442 


Q ss_pred             -----cch----------HHHh-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhc-CChHHHHHHhc
Q 017651          151 -----ENT----------KVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQ-GALIPLLAQLN  212 (368)
Q Consensus       151 -----~~~----------~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~-~~i~~l~~~l~  212 (368)
                           +.+          +.++ ..+.|..|+.++...+-.||..++..|.++... .++.++.++.. -+|..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 111          2233 457899999999999999999999999999754 45677776654 4799999999 


Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCC---C-HHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017651          213 ERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSN---D-EEVLTDACWALSYLSDGTNDKIQAVIEAGV  287 (368)
Q Consensus       213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~---d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  287 (368)
                      .+..+.++-.++..|..|.++.+.... ...++++..|..++...   | .-|..+++..+.||...+......+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            777788888999999999998754443 33478899999998643   3 368899999999999988888889999999


Q ss_pred             hHHHHHhcCCC---Cc-----c-----hHHHHHHHHHHhhcC-Ch----HHH-HHHHHcCChHHHHHhhCCCC-CccHHH
Q 017651          288 CPRLVELLGHP---SP-----S-----VLIPALRTVGNIVTG-DD----FQT-QCIITYGALPYLLGLLTHSH-KKSIKK  347 (368)
Q Consensus       288 ~~~L~~lL~~~---~~-----~-----v~~~a~~~l~nl~~~-~~----~~~-~~~~~~g~l~~l~~ll~~~~-~~~v~~  347 (368)
                      ++.|..+|.-.   +.     .     -...++.++..++.- +.    .+. ..+...+++..|..++-++. ..+++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            99999888432   21     1     124466666666542 21    233 45667799999999888773 568999


Q ss_pred             HHHHHHHHHhcCCHHH
Q 017651          348 EACWTISNITAGNRDQ  363 (368)
Q Consensus       348 ~a~~~l~nl~~~~~~~  363 (368)
                      ++.-+++++..|+...
T Consensus       336 esiitvAevVRgn~~n  351 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARN  351 (970)
T ss_pred             HHHHHHHHHHHhchHH
Confidence            9999999999876543

>PTZ00429 beta-adaptin; Provisional

Probab=99.12  E-value=7.5e-08  Score=94.33  Aligned_cols=262  Identities=15%  Similarity=0.104  Sum_probs=186.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.+++.+.+++.+.+.-....+.+++..  .+..-.+    .++.|.+-+.+++ |.+|-.|++.+++|-.  ++...
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            578889999999999998888888877543  2222222    3788888889888 9999999999998766  22222


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                           -.++.+.+.+.+.++.||..|+.++.++...+|+   .+...|.++.|..+| .+.++.++.+|+.+|..++...
T Consensus       140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence                 2456778888999999999999999999877663   455667888899988 8899999999999999998765


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      +. ........+..|+..|...++..+...+.+|......++...     ..++..+...|.+.++.|.-.|++++.++.
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            43 244445666677777777778888888888866543222221     246778888899999999999999999987


Q ss_pred             cCC-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          315 TGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       315 ~~~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      ... +.....+.. .+-..++.++ ++ +++++--+...|.-++...|..
T Consensus       285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~l  331 (746)
T PTZ00429        285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNL  331 (746)
T ss_pred             CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHH
Confidence            653 222222211 1223444443 34 5666666666665555554443

>PTZ00429 beta-adaptin; Provisional

Probab=99.12  E-value=1e-07  Score=93.47  Aligned_cols=254  Identities=16%  Similarity=0.121  Sum_probs=186.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..|.+.|++.+...+..|++.+-.+.... . ...     .+.+..++++.+++ ..++.-+.-.+.+++..+++.. 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~-DvS-----~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela-  103 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-R-DVS-----YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA-  103 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-C-Cch-----HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH-
Confidence            4567778888888888888887665554432 2 121     24677788888888 8999999999999988655432 


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                       ++   ++..|.+=+.++++.+|-.|+.+|++|-..  ...+.     .++++.+.+ .+.++-|++.|+.++..+.+..
T Consensus       104 -lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        104 -LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             -HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence             22   467888888899999999999999998543  22222     456677777 7889999999999999998765


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      |.  .....++++.|.++|.+.|+.|+..|+.+|..+....++...  ...+.+..++..|..-++-.+...+.++....
T Consensus       172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~  247 (746)
T PTZ00429        172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR  247 (746)
T ss_pred             cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence            43  222346788999999999999999999999999866544332  23445677777776666667777777776543


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      ..++...     ..++..+...|++. ++.|.-+|+.++.++...
T Consensus       248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASR  286 (746)
T ss_pred             CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCc
Confidence            3322222     24677788889998 899999999999998853

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1e-08  Score=97.38  Aligned_cols=242  Identities=18%  Similarity=0.171  Sum_probs=189.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      +..|++=|....++..|.+|+.-|.. |+-++++....+.-.-.+|.|+.+|+. .+.++.-.|++||.+|+.-.|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            45555556555347888888877766 444666665555555689999999997 5689999999999999998888888


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-C
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-T  275 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~  275 (368)
                      .+++.++||.|+..|..-...++.+.++.+|-.|++..+..  ..-.|.+...+.+|.--...++..|+.+.+|+|.. .
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A--iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA--ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            89999999999999877778899999999999999874432  23357777777777666678999999999999965 3


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhhCCCC---CccHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG---DDFQTQCIITYGALPYLLGLLTHSH---KKSIKKEA  349 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~---~~~~~~~~~~~g~l~~l~~ll~~~~---~~~v~~~a  349 (368)
                      ++....+++  .+|.|..+|...+....+.++-++..++.+   .++..+.+..+|++....+++.-.+   +..+.-..
T Consensus       327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            444466665  599999999999999999999999998753   4566777888999999999987652   34566777


Q ss_pred             HHHHHHHhcCCHHHh
Q 017651          350 CWTISNITAGNRDQI  364 (368)
Q Consensus       350 ~~~l~nl~~~~~~~i  364 (368)
                      +..++-+++|++.-.
T Consensus       405 Irmls~msS~~pl~~  419 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLF  419 (1051)
T ss_pred             HHHHHHHccCChHHH
Confidence            888888888877544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=3.7e-08  Score=96.93  Aligned_cols=277  Identities=16%  Similarity=0.155  Sum_probs=187.4

Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           77 PAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        77 ~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ..++..+.+ ..+.++.+-+..+..+++..-+.     --.++++.|++..++++ +..|+-|..+|+.+...-...-..
T Consensus        82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~  155 (1075)
T KOG2171|consen   82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQP  155 (1075)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccch
Confidence            455555554 44677888788888887654222     22456888899999998 899999999999988743322221


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHH
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---PRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN  229 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~---~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~  229 (368)
                      .+. ...+.|.+.+.+++..|+..++.+++.++...   +..++.+..  .+|.++..+.   ..++.+....+..+|..
T Consensus       156 ~~~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  156 HLD-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             hHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            111 24566677777777779999999999998544   233333333  5676776663   34566667778888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChHHHH---------------------------
Q 017651          230 FCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ---------------------------  280 (368)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~~~~~---------------------------  280 (368)
                      |....|..-...+..++.....+..+.  ++.+|..|+.+|..++...+...+                           
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            887755443344445555555555444  467777777777666543111100                           


Q ss_pred             ------------------HHHH-----cC---C----hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651          281 ------------------AVIE-----AG---V----CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL  330 (368)
Q Consensus       281 ------------------~~~~-----~~---~----~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l  330 (368)
                                        ..++     -|   +    ++.+-.+|.++++.-|..++.+|+.++.|+.+.....++ .++
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il  391 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KIL  391 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHH
Confidence                              0000     01   2    344455567888899999999999999999987776555 789


Q ss_pred             HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651          331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       331 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                      +.++..|+++ ++.||-.||.+++-++..=+..+
T Consensus       392 ~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  392 PIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHH
Confidence            9999999999 99999999999999997544433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.07  E-value=2.3e-08  Score=91.18  Aligned_cols=234  Identities=16%  Similarity=0.175  Sum_probs=167.5

Q ss_pred             HHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           78 AMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        78 ~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      .+...++++ +...+..|+.++..++..  .+.+..+.+.++++.|+++|+... ..+++++++.|++-++.. ++....
T Consensus       147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~--~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~  223 (429)
T cd00256         147 WLKEQLNNITNNDYVQTAARCLQMLLRV--DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEV  223 (429)
T ss_pred             HHHHHhhccCCcchHHHHHHHHHHHhCC--chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHh
Confidence            445555543 466778888999888864  456666778889999999998643 369999999999999994 555666


Q ss_pred             HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------hhhHHHHHhcCChHHHHHHhccc--cchhHHHHHHHH
Q 017651          156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS------PRCRDLVLSQGALIPLLAQLNER--AKLSMLRNATWT  226 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~------~~~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a~~~  226 (368)
                      ....+.|+.++.+++. ....+.+.++.+|.|+...+      ..+...++..| +++++..|...  .|+++....-..
T Consensus       224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~~L  302 (429)
T cd00256         224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLKFL  302 (429)
T ss_pred             hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            6678999999999986 56789999999999998632      22344556665 45666666432  355544332221


Q ss_pred             HH-------Hhh--------------cCCCCCC-hhh-----------hhchHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 017651          227 LS-------NFC--------------RGKPQPP-FDQ-----------VRPALPALAQLVH-SNDEEVLTDACWALSYLS  272 (368)
Q Consensus       227 L~-------~l~--------------~~~~~~~-~~~-----------~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~  272 (368)
                      -.       .++              ++.|.-. ..+           ...++..|+++|. ++|+.+..-||.=|+.++
T Consensus       303 ~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v  382 (429)
T cd00256         303 TEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV  382 (429)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence            11       111              1111111 000           1246678888984 568899999999999999


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      ...+.....+-+-|+=..+++++.+++++++..|+.+++.+..
T Consensus       383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8877776666677999999999999999999999999998754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.05  E-value=5.6e-09  Score=93.40  Aligned_cols=232  Identities=16%  Similarity=0.185  Sum_probs=160.2

Q ss_pred             cHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCCcchHHHhh------CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 017651          118 VVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVID------HGAVPIFVKLLASPSDDVREQAVWALGNVAGD  190 (368)
Q Consensus       118 ~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~  190 (368)
                      +...++.+|+.- .++++....+..+..+..+.+...+.+..      .....++++++..++..++..|+..|+.++..
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            455666666654 44899999999999999988877776665      23678889999999999999999999999877


Q ss_pred             ChhhHHHHHhcCChHHHHHHhcc---ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-----c--CCCHHH
Q 017651          191 SPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-----H--SNDEEV  260 (368)
Q Consensus       191 ~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-----~--~~d~~v  260 (368)
                      .+....... .+.++.+++.+..   .++.+.+..++.+|.+|.+.++........++++.+..++     .  ..+..+
T Consensus       136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            654322211 3467777777743   3456777999999999998764444444478999999998     2  235788


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhC
Q 017651          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLT  338 (368)
Q Consensus       261 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~  338 (368)
                      +.+++.+++-|+.. ++....+.+.++++.++.+++ +....+..-++.++-|++..... ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            99999999999976 555677888899999999994 45678889999999999987664 6666778787777766665


Q ss_pred             CCC-CccHHHHHHH
Q 017651          339 HSH-KKSIKKEACW  351 (368)
Q Consensus       339 ~~~-~~~v~~~a~~  351 (368)
                      ... ++++....-+
T Consensus       294 rk~~Dedl~edl~~  307 (312)
T PF03224_consen  294 RKWSDEDLTEDLEF  307 (312)
T ss_dssp             S--SSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence            432 5666655444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=3.2e-08  Score=88.66  Aligned_cols=268  Identities=19%  Similarity=0.129  Sum_probs=193.8

Q ss_pred             HHHHHHhhc---CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           76 LPAMVAGVW---SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        76 i~~l~~~l~---~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +..+.+.++   .....+...|+..|.+++..  ...-..+...+++..|++.|..++ .++.......|..++- ..++
T Consensus       262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eN  337 (791)
T KOG1222|consen  262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDEN  337 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccc
Confidence            445555444   23455666677777777632  233345778999999999999988 7888888899998887 4678


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +....+.|++..|++++...+++++...+..+.|++.++ ..|..++..|.+|.+..++..+....   .|+..++.++.
T Consensus       338 K~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~  413 (791)
T KOG1222|consen  338 KIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSC  413 (791)
T ss_pred             hHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccch---hhhhhhhhhcc
Confidence            888999999999999999999999999999999999887 47888999999999999994443333   46667777777


Q ss_pred             CCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-cCCCCcchHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l  310 (368)
                      ++..........+++.+.+.+ ...+.+|-...+..--|+|... ...+.+++...+..|+.. +++.++-    ....+
T Consensus       414 dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~l----LmK~v  488 (791)
T KOG1222|consen  414 DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLL----LMKVV  488 (791)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchH----HHHHH
Confidence            765555566678888877655 4445666555555555777542 233556666677777765 4555442    34567


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .|++.+.......+++  .+.-|...++..+++...-++..+++|++-
T Consensus       489 RniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v  534 (791)
T KOG1222|consen  489 RNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV  534 (791)
T ss_pred             HHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence            7887766543344444  456677777766577899999999999986

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.4e-08  Score=94.22  Aligned_cols=156  Identities=18%  Similarity=0.182  Sum_probs=124.0

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID----HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP  192 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~  192 (368)
                      .++|.|+++|.+++ ....+-|..+|..|+.++.+..+.-..    .-.+|.++++.+++++.+|..|+.++..+.-..+
T Consensus       128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            46899999999998 688999999999999976655443111    1357999999999999999999999998876554


Q ss_pred             hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      ..-..-++ .+++.+..+- .+.+++++.++|.++..|....+..-.....++++.++...++.|++|...||.....++
T Consensus       207 qal~~~iD-~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  207 QALYVHID-KFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHHHHHHH-HHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            32111111 1344444444 788999999999999999998877777777889999999999999999999999999999


Q ss_pred             cCC
Q 017651          273 DGT  275 (368)
Q Consensus       273 ~~~  275 (368)
                      ..+
T Consensus       285 eqp  287 (885)
T KOG2023|consen  285 EQP  287 (885)
T ss_pred             cCc
Confidence            875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=3.5e-08  Score=95.76  Aligned_cols=253  Identities=16%  Similarity=0.195  Sum_probs=197.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.+|.+++.|-|+-  -++.|+..|.+++... ...+..-..-|+.|.+++||.++. .+++..-+.+.+.|-.-++.++
T Consensus       472 eQLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            34566666555433  4667888888888765 777788888999999999999998 8999999999999888778999


Q ss_pred             HHHhhCCChHHHHHhhCC-C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          154 KVVIDHGAVPIFVKLLAS-P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~-~--~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ..+++.++-.++++.|.. +  +++-+..|+++|+.|..+-+-.+....+.+.+...+..|..++.+-++.-+|-||..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            999998888888888876 2  3588999999999999988888888999999999999995545677888899999999


Q ss_pred             hcCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----ChHHHHHH------------HHcCCh---HH
Q 017651          231 CRGKPQPPFDQV-RPALPALAQLVHSNDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVC---PR  290 (368)
Q Consensus       231 ~~~~~~~~~~~~-~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~~---~~  290 (368)
                      -.+.+.....-. .+....|..+|.++-++|+..|..+|+.+..+    .++.....            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            988765555443 56788899999999999999999999999875    23322222            222222   25


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL  330 (368)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l  330 (368)
                      ++.+++..++-++....-++..++.+.......+.-...+
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~  747 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL  747 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence            6667788889999999999999988776655544433333

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.91  E-value=1.9e-07  Score=82.66  Aligned_cols=236  Identities=14%  Similarity=0.169  Sum_probs=171.1

Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           77 PAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        77 ~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ..+...+++ .+.+....|+++|.-++..  ++.+..++..+++..++..+ ++...-++|++.+.|++-++. ++...+
T Consensus       159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae  235 (442)
T KOG2759|consen  159 GFLKEQLQSSTNNDYIQFAARCLQTLLRV--DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAE  235 (442)
T ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHhcC--cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHH
Confidence            334445554 5566777888899988764  56666788888899999888 443347999999999999998 577777


Q ss_pred             HHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh------hhHHHHHhcCChHHHHHHhcc--ccchhHHHHHHH
Q 017651          155 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSP------RCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATW  225 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~------~~~~~i~~~~~i~~l~~~l~~--~~~~~~~~~a~~  225 (368)
                      .+...+.|+.|..++++ ....|.+.++.++.|+....+      .....++.. .+++-++.|..  .+|+++....-.
T Consensus       236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~-~v~k~l~~L~~rkysDEDL~~di~~  314 (442)
T KOG2759|consen  236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC-KVLKTLQSLEERKYSDEDLVDDIEF  314 (442)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc-CchHHHHHHHhcCCCcHHHHHHHHH
Confidence            77777899999999986 457888999999999997764      222344444 45666666643  235554443322


Q ss_pred             HHHHh-------h--------------cCCCCCChh-h-----------hhchHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 017651          226 TLSNF-------C--------------RGKPQPPFD-Q-----------VRPALPALAQLVHSN-DEEVLTDACWALSYL  271 (368)
Q Consensus       226 ~L~~l-------~--------------~~~~~~~~~-~-----------~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l  271 (368)
                      .-..|       +              .+.|.-... +           ...++..|+++|+++ ||.+..-||.=|+..
T Consensus       315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~  394 (442)
T KOG2759|consen  315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY  394 (442)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence            22111       1              111111000 0           125778899999765 588999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          272 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      ....++....+.+.|+=..+++++++++++++-+|+.++..+..+
T Consensus       395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            999888888888899999999999999999999999999887654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.7e-06  Score=82.13  Aligned_cols=286  Identities=16%  Similarity=0.231  Sum_probs=213.3

Q ss_pred             ccHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCC------CCc---------hHHHH-hcCcHHHHHHhhcCCCCHHHH
Q 017651           74 ESLPAMVAGVWS--DDSSLQLEATTQFRKLLSIER------SPP---------IEEVI-QSGVVPRFVEFLMREDYPQLQ  135 (368)
Q Consensus        74 ~~i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~------~~~---------~~~~i-~~g~i~~Lv~lL~~~~~~~v~  135 (368)
                      .+++.++..|+.  .|++....++..+..+++.++      ++.         .+.++ ..+.|..|+.++...+ -.||
T Consensus        61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D-F~VR  139 (970)
T KOG0946|consen   61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD-FHVR  139 (970)
T ss_pred             cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc-hhhh
Confidence            368899999985  578888999999999988652      111         12233 5688999999999888 7999


Q ss_pred             HHHHHHHHHHhcC-CCcchHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc
Q 017651          136 FEAAWALTNIASG-TSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE  213 (368)
Q Consensus       136 ~~a~~~L~~l~~~-~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~  213 (368)
                      ..++..|+++-+. ..+.++.++. .-+|..++.+|.+....||..++..|..+..+++..+..+.-.+++..|+.++..
T Consensus       140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee  219 (970)
T KOG0946|consen  140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE  219 (970)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999997763 3455555554 5689999999999999999999999999999999999988888899999999965


Q ss_pred             cc--ch-hHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcC---CCHH----------HHHHHHHHHHHhhcCC-
Q 017651          214 RA--KL-SMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHS---NDEE----------VLTDACWALSYLSDGT-  275 (368)
Q Consensus       214 ~~--~~-~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~---~d~~----------v~~~a~~~l~~l~~~~-  275 (368)
                      .+  |. -+...++..+-||..+. .+..+....+.+|.|.++|..   .|.+          -...++.++..++.-. 
T Consensus       220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N  299 (970)
T KOG0946|consen  220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN  299 (970)
T ss_pred             cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence            44  33 46788889999999887 455555557899999988753   2311          2345666666666321 


Q ss_pred             h-----HHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHc----------CChHHHHHhhC
Q 017651          276 N-----DKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITY----------GALPYLLGLLT  338 (368)
Q Consensus       276 ~-----~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~----------g~l~~l~~ll~  338 (368)
                      .     .....+.+++++..|..++-++  ..+++..++.++++++.++......+.+.          -++-.++.+..
T Consensus       300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~n  379 (970)
T KOG0946|consen  300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFN  379 (970)
T ss_pred             cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHh
Confidence            1     2224677789999999998776  35789999999999999998777666543          12223444445


Q ss_pred             CCCCccHHHHHHHHHHHHhcCC
Q 017651          339 HSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       339 ~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      +.+.+.+|-.+.+++-.+...|
T Consensus       380 e~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  380 EKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             ccCCchHHHHHHHHHHHHHhcc
Confidence            5546788888888888777644

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.2e-07  Score=89.34  Aligned_cols=281  Identities=17%  Similarity=0.211  Sum_probs=184.7

Q ss_pred             HHHHHHhhcCCCHH-HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCC-cc
Q 017651           76 LPAMVAGVWSDDSS-LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTS-EN  152 (368)
Q Consensus        76 i~~l~~~l~~~~~~-~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~-~~  152 (368)
                      |+.++.....+.+. .+..++.++..++..- .+..-.--...++-.+++-.... .+..+|..|..+|.|--.... .+
T Consensus       131 i~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF  209 (859)
T KOG1241|consen  131 IVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF  209 (859)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence            55555555555444 7778888998885432 22211111344566666666542 236899999999998544211 11


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      ....-.+-++...+..-.+++.+++..|+.||..|..-.-++-..-+....+..-+..+ .++++++.-.+....+++|.
T Consensus       210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstice  288 (859)
T KOG1241|consen  210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICE  288 (859)
T ss_pred             ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence            12222233567777778889999999999999999754322212222222344445556 57888888888888887775


Q ss_pred             CCCC-------------C--Ch----hhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          233 GKPQ-------------P--PF----DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (368)
Q Consensus       233 ~~~~-------------~--~~----~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  286 (368)
                      ..-.             +  ..    .....++|.|+++|..       +|+.....|-.||.-++....+.   ++. -
T Consensus       289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~  364 (859)
T KOG1241|consen  289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-H  364 (859)
T ss_pred             HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-h
Confidence            4211             1  11    1124678888888853       23455666666666665332221   222 3


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      +++.+-+.+.++++.-+..|..++|.+..+.+..+..-+..+++|.++.++.++ .-.++..++|+++.++.+.++-
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~  440 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEA  440 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhh
Confidence            456666677899999999999999999999987777677779999999999988 8889999999999999866543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.87  E-value=1.3e-07  Score=84.71  Aligned_cols=265  Identities=15%  Similarity=0.100  Sum_probs=177.1

Q ss_pred             ccHHHHHHhhcCCCHH--HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           74 ESLPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~--~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      +.+..|++++.+++-+  ++.+|.+.|..+++.   ++.+.+..-| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            4688999999988754  499999999999874   5566666655 444444444444478999999999999999999


Q ss_pred             chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ....++..|+++.++...+..++.+..+|+.+|+|++-+. ...+..+++..+-+-|..+- .+.|+-++.++|-+...|
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999888888999999999999998553 45667777777766666665 555788888999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHH-HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651          231 CRGKPQPPFDQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  309 (368)
                      +..+.........+.+...-.++.+-||.- ..++    ...+.+        .....++.|+.+|.+..-+.+.-+..-
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~----hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~  402 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA----HDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFY  402 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh----hhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHH
Confidence            987643333333344444444444444321 1111    011111        112357889999987655544444333


Q ss_pred             HHHhhcC-C-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHH
Q 017651          310 VGNIVTG-D-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (368)
Q Consensus       310 l~nl~~~-~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl  356 (368)
                      ++.=+.- + ....+.+-+-|.+..|-.+.+++ +..-.+-|-.+|.-|
T Consensus       403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            3322221 1 12233344569999999999877 554444444444443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.70  E-value=1.9e-06  Score=79.10  Aligned_cols=274  Identities=16%  Similarity=0.109  Sum_probs=176.4

Q ss_pred             HHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCc--HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           77 PAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGV--VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        77 ~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~--i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ..++...-.+ .......++..+.+.+... .| ...+-.++.  +....--++...+..+|..|+.+|.+-...   .+
T Consensus       136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~  210 (858)
T COG5215         136 EEMVRNVGDEQPVSGKCESLGICGYHCESE-AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQ  210 (858)
T ss_pred             HHHHHhccccCchHhHHHHHHHHHHHhhcc-CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HH
Confidence            3444444433 3567778888888887654 23 222223332  233334455544478999999999883221   11


Q ss_pred             HHHhh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          154 KVVID----HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       154 ~~~~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      ..+-.    +-.+...+..-+.++.+++..+..||..|..-.-.+-...++. .+-.+.....++++.++...+....+.
T Consensus       211 ~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWst  289 (858)
T COG5215         211 GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWST  289 (858)
T ss_pred             HhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence            11111    1234555666677899999999999999874322222233333 334444443488899999888888877


Q ss_pred             hhcCCCCCCh-----------------hhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651          230 FCRGKPQPPF-----------------DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEA  285 (368)
Q Consensus       230 l~~~~~~~~~-----------------~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  285 (368)
                      +|........                 .....++|.|+.+|..       +|+.+-..|..||--.+....+   .++..
T Consensus       290 iceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~p  366 (858)
T COG5215         290 ICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMRP  366 (858)
T ss_pred             HHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHHH
Confidence            8765311100                 1134588999999954       3456666677777666643222   23332


Q ss_pred             CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                       ++..+-+-+.++++.-++.|+.++|.+..+..+.+-.-+-...+|.+...+.++ .-.++..++|+++.|+..-+
T Consensus       367 -Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         367 -VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             -HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence             455555667889999999999999999999887666666668899999999877 88899999999999986433

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=1e-05  Score=68.98  Aligned_cols=269  Identities=16%  Similarity=0.234  Sum_probs=174.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +..++.++.+.+|.++..|+..+..+...    ..+.+.  +.-.++.+.+++...+ +  -..|+.+|.|++. ....+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            56789999999999999999888877653    222222  2345788999998876 4  6789999999999 46777


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHHhcc-ccc-hhHHHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAQLNE-RAK-LSMLRNATWT  226 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~-----~~i~~l~~~l~~-~~~-~~~~~~a~~~  226 (368)
                      +.++.. .+..++..+.++...+.+..+.+|+|++.+...+.......     .++..+...+.. +.+ ..-..+.+..
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            777776 77888888888878889999999999999876665544322     133333333322 222 1224567788


Q ss_pred             HHHhhcCCCCCChhhhhchHH--HHHHhhcCCCHHHH-HHHHHHHHHhhcCChHHHHHHHHc--CChHHHH---------
Q 017651          227 LSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDEEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRLV---------  292 (368)
Q Consensus       227 L~~l~~~~~~~~~~~~~~~~~--~L~~lL~~~d~~v~-~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~L~---------  292 (368)
                      +.||++.............+|  .+..+-+ .+..++ .-.+++|.|+|.....+ ..+++.  .+++.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence            889888753333333222222  3444433 455554 45777888887654333 222221  2233222         


Q ss_pred             ------------HhcC-----CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          293 ------------ELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       293 ------------~lL~-----~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                                  ++|.     .+++.++.--+.+|--+|+... .++.+.+.|+.+.+-.+=+..++++++ +||.-+.+
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq  311 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ  311 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence                        3332     2467899999999999987544 778888888888777776666345554 55555555


Q ss_pred             Hh
Q 017651          356 IT  357 (368)
Q Consensus       356 l~  357 (368)
                      +.
T Consensus       312 ~L  313 (353)
T KOG2973|consen  312 ML  313 (353)
T ss_pred             HH
Confidence            43

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=7e-06  Score=77.37  Aligned_cols=219  Identities=17%  Similarity=0.195  Sum_probs=164.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      -+.++.+|.+.-+.++..|+..+.+++-.. ++...     ..+|.|++-|.++| |.|+..|+.++..++..+|.+.- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            467888888989999999998888887554 22222     24899999999999 99999999999999998886532 


Q ss_pred             HhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh--hc
Q 017651          156 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF--CR  232 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l--~~  232 (368)
                          ..-|.|..+|-. .+.=+....+..+++|+.-.|....     ..+++|.+++....-.++...+..++...  +.
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                245788887764 4455666788889999877765433     36899999995544566666666665433  32


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      +- ........-++..|-.++.++|+.+..-++-+++.+....+..++..     -..+++.|.+.++.+|..|+..+.-
T Consensus       289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence            21 12333445678888888999999999999999999997766654433     4568899999999999999999999


Q ss_pred             hhcCC
Q 017651          313 IVTGD  317 (368)
Q Consensus       313 l~~~~  317 (368)
                      ++...
T Consensus       363 mVskk  367 (877)
T KOG1059|consen  363 MVSKK  367 (877)
T ss_pred             Hhhhh
Confidence            88654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.66  E-value=1.2e-05  Score=73.14  Aligned_cols=274  Identities=18%  Similarity=0.191  Sum_probs=185.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ++.+..++-+++.+++-.|.+.+|.++..  ......+.+.++--.++.-|..++ +..-|.+|++.+..+..-. +..+
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~  103 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK  103 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence            34444455566699999999999999874  466777888886666677776543 3456889999888877631 1111


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                       .+..|++..++.+..++++.++..|+.+|+.++..+|+   .+...|++..+++.+.. +..++...++.++..+...+
T Consensus       104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence             23457889999999999999999999999999998874   68899999999999944 54558888999999998875


Q ss_pred             CCCChhhh----hchHHHHHHhh---cCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcCCCCcchHH
Q 017651          235 PQPPFDQV----RPALPALAQLV---HSNDE--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGHPSPSVLI  304 (368)
Q Consensus       235 ~~~~~~~~----~~~~~~L~~lL---~~~d~--~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~v~~  304 (368)
                      ....+...    ..++..+.+.-   ..++.  +-...+..++..+...-++..-.-.+. ..+..|+..|..+.+.+|.
T Consensus       179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence            33332222    22333333331   11222  355566666666655433332221111 3566677777777766776


Q ss_pred             HHHHHHHHhhc-------------------CC--------------------------h-------HHHHHHHHcCChHH
Q 017651          305 PALRTVGNIVT-------------------GD--------------------------D-------FQTQCIITYGALPY  332 (368)
Q Consensus       305 ~a~~~l~nl~~-------------------~~--------------------------~-------~~~~~~~~~g~l~~  332 (368)
                      ..+.++..+..                   +.                          +       -....+++.|+++.
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~  338 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEA  338 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence            66666665441                   00                          0       01122357899999


Q ss_pred             HHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          333 LLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       333 l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      |..++.+.+++.+.+.|...|+++.
T Consensus       339 L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  339 LVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHH
Confidence            9999998878899999999998875

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.62  E-value=7.8e-08  Score=57.74  Aligned_cols=41  Identities=29%  Similarity=0.588  Sum_probs=37.8

Q ss_pred             ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       317 ~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++++.+.+++.|+++.|+.+|.++ ++.++++|+|+|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            356788999999999999999988 99999999999999985

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.57  E-value=1.8e-06  Score=77.42  Aligned_cols=187  Identities=19%  Similarity=0.217  Sum_probs=144.8

Q ss_pred             hHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 017651          110 IEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV  187 (368)
Q Consensus       110 ~~~~i~~g~i~~Lv~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl  187 (368)
                      .+++...|++..|+.++..++. ..++.+|++.|..+..  .++++.+...| +..++.+-+. ..+++....+.+|+++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3566678999999999998863 4679999999999887  57788888766 5555555443 5578999999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCCh-hhhhchHHHHHHhhcCCCHHHHHHHH
Q 017651          188 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPF-DQVRPALPALAQLVHSNDEEVLTDAC  265 (368)
Q Consensus       188 a~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~  265 (368)
                      ..++.+....++..|+++.++--. ...++.+.++++.+|.|++-+.. .... .....+.+.|..+-.+.|+-.+.+||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988889999999999999888 66779999999999999887652 2222 22244556777777778888999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcc
Q 017651          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS  301 (368)
Q Consensus       266 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  301 (368)
                      .+++-|+... +.-..+..+|.+..+-.++.+.+|.
T Consensus       329 lAV~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~  363 (832)
T KOG3678|consen  329 LAVAVLATNK-EVEREVRKSGTLALVEPLVASLDPG  363 (832)
T ss_pred             HHHhhhhhhh-hhhHHHhhccchhhhhhhhhccCcc
Confidence            9999999763 3335566778777777777665553

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.54  E-value=2.7e-05  Score=72.95  Aligned_cols=257  Identities=15%  Similarity=0.129  Sum_probs=173.7

Q ss_pred             CCchHHHHhcCcHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCC-----
Q 017651          107 SPPIEEVIQSGVVPRFVEFL---------MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-----  172 (368)
Q Consensus       107 ~~~~~~~i~~g~i~~Lv~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----  172 (368)
                      ....+.+.....+..|.++-         ....++.+..+|++||.|+...++..+..+++.|..+.++..|+..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            33445555555566666555         2333489999999999999998999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHHhcc----------------ccchhHHHHHHHHHHHhhcCCC
Q 017651          173 SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAQLNE----------------RAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       173 ~~~v~~~a~~~L~nla~~~~~~~~~i~~~-~~i~~l~~~l~~----------------~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      +.++.-..+..|.-++...+..+..+++. +++..++..|..                ..+......++..+.|+....+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            78888889999888887777777666544 677777766521                0245667788999999987764


Q ss_pred             CCChhh----hhchHHHHHHhh---cCC--CHHHHHHHHHHHHHhhcCChHH-----------HHHHHHcCChHHHHHhc
Q 017651          236 QPPFDQ----VRPALPALAQLV---HSN--DEEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELL  295 (368)
Q Consensus       236 ~~~~~~----~~~~~~~L~~lL---~~~--d~~v~~~a~~~l~~l~~~~~~~-----------~~~~~~~~~~~~L~~lL  295 (368)
                      ......    ...+++.+..++   ..+  .......++.+|.++--.....           .........+..|+.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            433212    234445555552   111  2456777777777773111111           00001123456666666


Q ss_pred             CC-----C---CcchHHHHHHHHHHhhcCChHHHHHHHH----------------cCChHHHHHhhCCCCCccHHHHHHH
Q 017651          296 GH-----P---SPSVLIPALRTVGNIVTGDDFQTQCIIT----------------YGALPYLLGLLTHSHKKSIKKEACW  351 (368)
Q Consensus       296 ~~-----~---~~~v~~~a~~~l~nl~~~~~~~~~~~~~----------------~g~l~~l~~ll~~~~~~~v~~~a~~  351 (368)
                      ..     .   -.+...+.+.+|.+++......++++..                ..+-..|++++.+. .+.+|..++-
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            21     1   1357889999999999887655555542                24677899999999 6999999999


Q ss_pred             HHHHHhcCCHHHh
Q 017651          352 TISNITAGNRDQI  364 (368)
Q Consensus       352 ~l~nl~~~~~~~i  364 (368)
                      .+..+|..+.+.+
T Consensus       331 llf~Lc~~d~~~~  343 (446)
T PF10165_consen  331 LLFVLCKEDASRF  343 (446)
T ss_pred             HHHHHHhhhHHHH
Confidence            9999998776654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.54  E-value=2.9e-06  Score=77.95  Aligned_cols=267  Identities=18%  Similarity=0.115  Sum_probs=174.3

Q ss_pred             CHHHHHHHHHHHHHhhcC-CCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHH
Q 017651           87 DSSLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF  165 (368)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~-~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  165 (368)
                      +...++.|+.+|.+-+-. ..+-+.+. -..-++...++....++ .+++..|..||..|..-.-.....+++.-.....
T Consensus       191 ~~avRLaaL~aL~dsl~fv~~nf~~E~-erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt  268 (858)
T COG5215         191 TSAVRLAALKALMDSLMFVQGNFCYEE-ERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT  268 (858)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchh-hhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777777652210 00000000 01113444555556666 8999999999999988666777777777777788


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH----------------HhcCChHHHHHHhcc-c-----cchhHHHHH
Q 017651          166 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLV----------------LSQGALIPLLAQLNE-R-----AKLSMLRNA  223 (368)
Q Consensus       166 ~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i----------------~~~~~i~~l~~~l~~-~-----~~~~~~~~a  223 (368)
                      .+.++++++++..+++...+.++...-...-..                .-.+++|.|+++|.+ +     ++..+-..|
T Consensus       269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA  348 (858)
T COG5215         269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA  348 (858)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence            889999999999999988888874321110000                012368899999964 2     234555667


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchH
Q 017651          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL  303 (368)
Q Consensus       224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~  303 (368)
                      ..||.-+++...+   ..+.+++..+-+-++++++.-+..+..+++.+..++.+....-+-...+|.+...+.++.-.++
T Consensus       349 ~sCLqlfaq~~gd---~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk  425 (858)
T COG5215         349 SSCLQLFAQLKGD---KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK  425 (858)
T ss_pred             HHHHHHHHHHhhh---HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence            7777766655422   2234456666677788899999999999999999877655544445678888888887778899


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHH-cCChHHH-HHhhCC-CCCccHHHHHHHHHHHHhcCCHH
Q 017651          304 IPALRTVGNIVTGDDFQTQCIIT-YGALPYL-LGLLTH-SHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       304 ~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~l-~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      ..+.||+|.|+..-+.    .++ .|-++.. ...+.. .+.+.+...++|..-|++..-++
T Consensus       426 ~ttAwc~g~iad~va~----~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~  483 (858)
T COG5215         426 STTAWCFGAIADHVAM----IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK  483 (858)
T ss_pred             hHHHHHHHHHHHHHHH----hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence            9999999999864332    222 2222222 222211 12568889999999999875433

>TIGR02270 conserved hypothetical protein

Probab=98.53  E-value=4.9e-05  Score=69.97  Aligned_cols=219  Identities=21%  Similarity=0.107  Sum_probs=143.8

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        75 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      .++.++..+. .++.+....++..+...   + .+.        .+..|+..|.+++ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ---E-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            4666777774 45566655555444321   1 111        2677888888777 6788888888875444      


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                           ....+.|+.+|.++++.++..++.+++..-.+            ..+.+...| ++.+..++..++.++..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 14567788888888888888777777662211            245677777 677888888888888877754


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH----c------------------CChHHH
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE----A------------------GVCPRL  291 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----~------------------~~~~~L  291 (368)
                                ..+|.|...+.+.|+.|+..|+++++.+-.  +.....+..    .                  ..++.|
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L  245 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL  245 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence                      456667777888888888888888766632  111111111    1                  234445


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ..++.++  .++..++.++|.+-..           ..++.|+..+.+.   .+++.|.++++.|+.
T Consensus       246 ~~ll~d~--~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~---~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       246 RELLQAA--ATRREALRAVGLVGDV-----------EAAPWCLEAMREP---PWARLAGEAFSLITG  296 (410)
T ss_pred             HHHhcCh--hhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence            5555443  3677777777765432           4578888888766   499999999999997

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.52  E-value=1.3e-07  Score=56.79  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=37.9

Q ss_pred             CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651          149 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG  189 (368)
Q Consensus       149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~  189 (368)
                      +++++..+++.|++|.|+.+|.+++.++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            35778899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.2e-05  Score=75.89  Aligned_cols=218  Identities=15%  Similarity=0.162  Sum_probs=165.0

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      +-+-++.+|+++. |-+|..|+.++..+....++...     ..+|.|..-|.++++.|+..|+.+++.||..+|...  
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            4566788888888 89999999999999886555432     468999999999999999999999999999888642  


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHH--HhhcC
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALS--YLSDG  274 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~--~l~~~  274 (368)
                       +.  .-|.+..+|..+.+--+....+..+++|+-..|.    .-..++|.|..++++.. ..+...+..++.  +++.+
T Consensus       217 -L~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 -LQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             -cc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence             12  4678888887788888889999999999866442    23468888999987664 455555555543  34444


Q ss_pred             ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651          275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (368)
Q Consensus       275 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~  354 (368)
                      .++....+-  =++..|-.++.+.++.++.-++.+++.+....+...+.     --+.++.+|.+. ++.+|-.|.-.+.
T Consensus       290 ~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence            323222111  14677777888999999999999999999877765553     355678888888 8899999888887


Q ss_pred             HHhc
Q 017651          355 NITA  358 (368)
Q Consensus       355 nl~~  358 (368)
                      -+..
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            7764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.50  E-value=1.8e-05  Score=71.86  Aligned_cols=230  Identities=28%  Similarity=0.330  Sum_probs=164.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.+++.+.+.++.++..|+..+..+-..            -.++.+..++.+.+ +.+|..|+.+|+.+-..      
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP------  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh------
Confidence            578889999998999999999887765332            25899999999998 89999999988876652      


Q ss_pred             HHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-----------chhHHHH
Q 017651          155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----------KLSMLRN  222 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-----------~~~~~~~  222 (368)
                           ..++.|+.++. +++..++..+.++|+.+-...           .+.+++..+....           ...++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 36889999998 699999999999999985432           3677777773322           1134555


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcch
Q 017651          223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV  302 (368)
Q Consensus       223 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v  302 (368)
                      +...+..+-..          ..++.+...+.+.+..++..+..+++.+....         ..+...+...+.+++..+
T Consensus       169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            55555555433          46778889999888999999999999988764         234677888888899999


Q ss_pred             HHHHHHHHHHhhcCChHH--HHHHH-------------H-----cCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          303 LIPALRTVGNIVTGDDFQ--TQCII-------------T-----YGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~--~~~~~-------------~-----~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      +..++..+|.+-......  ...+.             .     ......+...+.+. ...++..+++.+.-+..+
T Consensus       230 r~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         230 RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDE-ANAVRLEAALALGQIGQE  305 (335)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhhcc-hhhHHHHHHHHHHhhccc
Confidence            999988888875432211  00010             1     01133444444555 667777777777766553

>TIGR02270 conserved hypothetical protein

Probab=98.48  E-value=5.1e-05  Score=69.85  Aligned_cols=191  Identities=20%  Similarity=0.106  Sum_probs=138.4

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      .++.|+..|.....+++...+++++.....  +         .++..|+..|.+.++.++..++.+|+.+-..       
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-------  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR-------  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch-------
Confidence            478899999644437888877776643221  1         1389999999999999999999999976322       


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                          +..+.|+..+ .+.++.++..++.++....           ....+.+..+|++.|+.|+..++.+++.+-..   
T Consensus       117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence                1467788888 7888889888887776622           12456788889999999999999999998743   


Q ss_pred             HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHH------------------HHHc----CChHHHHH
Q 017651          278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC------------------IITY----GALPYLLG  335 (368)
Q Consensus       278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~------------------~~~~----g~l~~l~~  335 (368)
                              ..++.|...+.+.++.+|..|++.++.+-.  +.....                  ++..    ..++.|..
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~  247 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE  247 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence                    235567777999999999999999887732  111111                  1111    34566666


Q ss_pred             hhCCCCCccHHHHHHHHHHHHhc
Q 017651          336 LLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       336 ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +++++   .++..++++++.+..
T Consensus       248 ll~d~---~vr~~a~~AlG~lg~  267 (410)
T TIGR02270       248 LLQAA---ATRREALRAVGLVGD  267 (410)
T ss_pred             HhcCh---hhHHHHHHHHHHcCC
Confidence            76665   499999999997653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.47  E-value=1.7e-06  Score=64.50  Aligned_cols=115  Identities=15%  Similarity=0.101  Sum_probs=100.3

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      +.+..|+.-+....+.+.+.+...-|.|.+. +|.+-..+.+..+++.++..|..++..+++.++..|+|+|.+. ....
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHH
Confidence            4466666656554448999999999999999 4888899999999999999999999999999999999999986 4678


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .+.+.++++.++..+ .++...+...++.++..|+.+.
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            899999999999999 7888888999999999999765

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=4.8e-05  Score=72.79  Aligned_cols=224  Identities=16%  Similarity=0.179  Sum_probs=126.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  198 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i  198 (368)
                      ...+.+=|++++ .-++-.|+.+|+++++  ++...     ...|-+-++|+++++.++..|+.|...+....|..-+. 
T Consensus       109 tNslknDL~s~n-q~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-  179 (866)
T KOG1062|consen  109 TNSLKNDLNSSN-QYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-  179 (866)
T ss_pred             HHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-
Confidence            455666677777 6788889999999988  34332     34577788999999999999999999998887765443 


Q ss_pred             HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---------------CCCHHHHHH
Q 017651          199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------------SNDEEVLTD  263 (368)
Q Consensus       199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~---------------~~d~~v~~~  263 (368)
                          ++++...+| .+.+..+....+..+..+|...+ ........+++.++..|.               -+||.++..
T Consensus       180 ----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~-~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~  253 (866)
T KOG1062|consen  180 ----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISP-DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR  253 (866)
T ss_pred             ----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence                344444454 44444444444444444544322 111111223333333331               124455555


Q ss_pred             HHHHHHHhhcCChHHHHHHHH-----------------cCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHHHHH
Q 017651          264 ACWALSYLSDGTNDKIQAVIE-----------------AGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCII  325 (368)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~-----------------~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~  325 (368)
                      ++..|+-|-.++.+..+.+.+                 +-+.+.+..++. .+++.+|..|+.+||.+..+.+.++.++-
T Consensus       254 iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva  333 (866)
T KOG1062|consen  254 ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA  333 (866)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee
Confidence            555555554443333222211                 001112222221 23456777777777777766664444332


Q ss_pred             Hc--------------CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          326 TY--------------GALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       326 ~~--------------g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      -.              .-=..++.+|+++ +..+|+.|.-.+..++-
T Consensus       334 Ln~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn  379 (866)
T KOG1062|consen  334 LNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVN  379 (866)
T ss_pred             hhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhc
Confidence            11              1123467788888 88888888887777764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=0.00022  Score=61.63  Aligned_cols=285  Identities=15%  Similarity=0.178  Sum_probs=191.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch---HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI---EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~---~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      .+.|-..|..++..++..++..+..++...+...+   ..+++.|+++.++.++...+ .++-..|...+..|+. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            45666677788888999999988888765432222   34568999999999999888 7999999999999998 4666


Q ss_pred             hHHHhhCCChHHHHH--hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          153 TKVVIDHGAVPIFVK--LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~--lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ...+.+....+.+-.  +-..-++-.+...+..+..|..-+|.........|.+..|..-+....|.-++.++......|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            777777666654432  222234455667788888888888888888999999999988886667888888888888888


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh--H-HHHHHHHc--CChHHHHHhcCCCCcchH
Q 017651          231 CRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVCPRLVELLGHPSPSVL  303 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~--~-~~~~~~~~--~~~~~L~~lL~~~~~~v~  303 (368)
                      ........+..-.+++..+..++...  +|.-.-.++-..+.+.....  + .-+.+++.  -.+....+.....+++.+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            87665666666678888888887543  44433334444444432210  0 00111111  124444555667889999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCC--hHHH-HHhhCCCCCccHHHHHHHHHHHHhcC---CHHHh
Q 017651          304 IPALRTVGNIVTGDDFQTQCIITYGA--LPYL-LGLLTHSHKKSIKKEACWTISNITAG---NRDQI  364 (368)
Q Consensus       304 ~~a~~~l~nl~~~~~~~~~~~~~~g~--l~~l-~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~i  364 (368)
                      ..|+.++|.+-+... ..+.+...|-  ...+ ......+ ..--+..+..+|.||+..   .++|+
T Consensus       322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqi  386 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQI  386 (524)
T ss_pred             HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhc
Confidence            999999999876544 5665555443  2222 2333222 344567778899999873   45544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=7.1e-05  Score=69.92  Aligned_cols=236  Identities=16%  Similarity=0.121  Sum_probs=164.5

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      .++..|+.-+..+. +.+|.....||..+..... ...   ..-..+.+.+++......-+..+.+.+..+..+..  -.
T Consensus        96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~-~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~  168 (569)
T KOG1242|consen   96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSK-GLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IE  168 (569)
T ss_pred             HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhh-ccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hh
Confidence            35778888888888 8999999999988766321 111   11245777888888888888899999999988764  35


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~  276 (368)
                      .+.+.+++..+...+.......-++.+..++-..+..-.......+..++|.++..+.+..+.|+..+..+.-.+...-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            66777888889888843333333333444444444443333333344677777777777788888888777766553321


Q ss_pred             -HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          277 -DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       277 -~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                       ....     -+++.++.-+....+.....++..+|.++...+.+.... -..++|.+...|-++ ++.+|+.+..++-+
T Consensus       249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLK  321 (569)
T ss_pred             cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence             1111     134444444444478889999999999998888776644 448999999999999 99999999999999


Q ss_pred             Hhc--CCHHHhhhc
Q 017651          356 ITA--GNRDQIQVM  367 (368)
Q Consensus       356 l~~--~~~~~i~~v  367 (368)
                      ++.  .+++ |+.+
T Consensus       322 ~~svidN~d-I~~~  334 (569)
T KOG1242|consen  322 FGSVIDNPD-IQKI  334 (569)
T ss_pred             HHHhhccHH-HHHH
Confidence            997  5555 6544

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.42  E-value=7.6e-06  Score=75.90  Aligned_cols=265  Identities=16%  Similarity=0.137  Sum_probs=172.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      +..++..|++..+..+..|+.....++..- .......+...|  ..|.+.|.... |++---.+.++..|.+...-...
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhhhccccc
Confidence            567788889999999999887666543211 011123333444  34667776666 78766666666655542111101


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .---.|++|.|.-+|++....++...+..++.|+..+|++...-....+.-.|++.| .+-+.+++++|..++..+++.-
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence            111248999999999999999999999999999998887433222223445677777 7778999999999999998763


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      ..      ..++..|+.-|...+-.-+....-+++-.+.....       ..++|.|+.=-..++..++.-.+.+++.+.
T Consensus       762 GP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         762 GP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             CH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence            11      24566666666655544444444444444322111       124555555556677888988888888876


Q ss_pred             cCChHH-HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          315 TGDDFQ-TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       315 ~~~~~~-~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      ..-.+. .+++.  -+.|.|-+.|.+. ++.-|..|+-+|.+++.+.
T Consensus       829 eyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         829 EYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhcCC
Confidence            543322 22222  4677888888888 8889999999999888653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=5.1e-06  Score=75.79  Aligned_cols=243  Identities=13%  Similarity=0.200  Sum_probs=171.9

Q ss_pred             HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 017651          112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  191 (368)
Q Consensus       112 ~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~  191 (368)
                      .+.+..+...|+++|+.|+ ..+...+...+.|..-.-+..+..++..|++..|+.++.+.+..++....|.+..+..+.
T Consensus       426 gL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync  504 (743)
T COG5369         426 GLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             hccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence            3557788999999999988 788888889999988877888899999999999999999999999999999999998665


Q ss_pred             hh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--CChhhh------hchHHHHHHhhcCCCHHHHH
Q 017651          192 PR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQV------RPALPALAQLVHSNDEEVLT  262 (368)
Q Consensus       192 ~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~~~~L~~lL~~~d~~v~~  262 (368)
                      .. .+-.++..-++..++.+. .+++-.++..+...|.|+..+...  ......      .-++..+++.+...+|-...
T Consensus       505 q~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~  583 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL  583 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence            33 233455556789999998 889999999999999999874421  111111      22455666667777776667


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcC----C----------------------------------------
Q 017651          263 DACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLG----H----------------------------------------  297 (368)
Q Consensus       263 ~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~----~----------------------------------------  297 (368)
                      ..|..|.+++..++...+.+.+. ..+..+..+|.    .                                        
T Consensus       584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~  663 (743)
T COG5369         584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL  663 (743)
T ss_pred             hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence            77888888876655443333222 33333333220    0                                        


Q ss_pred             ---------CCcchHHHHHHHHHHhhc---CCh------HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          298 ---------PSPSVLIPALRTVGNIVT---GDD------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       298 ---------~~~~v~~~a~~~l~nl~~---~~~------~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                               ++.++-.+..|++-|+.-   +..      +.++.+.+.|+-+.+..+..++ ++.+|+.+--+|-|+-
T Consensus       664 D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~-Sl~vrek~~taL~~l~  740 (743)
T COG5369         664 DNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKD-SLIVREKIGTALENLR  740 (743)
T ss_pred             cccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence                     011233455565555432   111      5566666778888888877777 8899999999988763

>PF05536 Neurochondrin: Neurochondrin

Probab=98.42  E-value=2.1e-05  Score=75.25  Aligned_cols=236  Identities=19%  Similarity=0.158  Sum_probs=164.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc--hHHHHhcCcHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNI  145 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~--~~~~i~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~~l  145 (368)
                      ..+.+.+.+|++.+.+.++.++-.+.+++...+...  .+.+.+.=+.+.+-++|.++.      ....+.-|+.+|+.+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            357889999999998899999999999987642212  223666666788888888732      156788888999998


Q ss_pred             hcCCCcch--HHHhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHH
Q 017651          146 ASGTSENT--KVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN  222 (368)
Q Consensus       146 ~~~~~~~~--~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~  222 (368)
                      +. .++..  ..++  +-||.|+..+.+.+. ++...|+.+|..++.. +..+..+++.|+++.|.+.+.+  .......
T Consensus        85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~  158 (543)
T PF05536_consen   85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEI  158 (543)
T ss_pred             cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence            88 34433  2333  579999999987766 9999999999999954 5678999999999999999844  4555677


Q ss_pred             HHHHHHHhhcCCCCC----ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHH----HHH
Q 017651          223 ATWTLSNFCRGKPQP----PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPR----LVE  293 (368)
Q Consensus       223 a~~~L~~l~~~~~~~----~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~----L~~  293 (368)
                      ++.++.+++......    .......+++.+...+...........|..|+.+....+.. ........+...    +..
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            888888877654321    12223456666777777666777788888888887654211 112222233333    444


Q ss_pred             hcCC-CCcchHHHHHHHHHHhhc
Q 017651          294 LLGH-PSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       294 lL~~-~~~~v~~~a~~~l~nl~~  315 (368)
                      +|.+ ..+.-|.+++...+.+..
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHH
Confidence            4533 356778888888777764

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.41  E-value=9.2e-06  Score=76.88  Aligned_cols=262  Identities=15%  Similarity=0.151  Sum_probs=168.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCC-CchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--CCcc
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERS-PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--TSEN  152 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~-~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~  152 (368)
                      +..++..|++..+.++..|+..+..++..-.. ..-..+-..|  ..|.+.|.... |++---.+.++..|...  -...
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeey-pEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence            34456677888899999998887766432101 1111222333  34678887766 77765555555444431  1111


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..  -.+++|.|.-+|++....+++.++..++.||..++++...-....+.-.|+.+| ..-+.++++++..++..++.
T Consensus       878 ~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  878 TPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHH
Confidence            111  137899999999999999999999999999988877533322333455677888 66678999999999999987


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .-.      -..++..|+.-|...+-..+....-+|+-.+......       .++|.|+.--..++..++.-.+.+++.
T Consensus       955 aIG------PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-------tVLPalmneYrtPe~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen  955 AIG------PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-------TVLPALMNEYRTPEANVQNGVLKALSF 1021 (1172)
T ss_pred             hcC------HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-------hhhHHHHhhccCchhHHHHhHHHHHHH
Confidence            531      0245566666665555444444333443333221111       245666655567788889989998888


Q ss_pred             hhcCChHHH-HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          313 IVTGDDFQT-QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       313 l~~~~~~~~-~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      +...-.+.. +++.  -+.|.|-+.|.+. +..-|..|+-++.+++-|
T Consensus      1022 ~FeyigemskdYiy--av~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIY--AVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHHhhhHHH--HhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence            875433222 2222  4678888888888 888899999999888865

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.40  E-value=2.6e-05  Score=66.87  Aligned_cols=224  Identities=17%  Similarity=0.207  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHh-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHH
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPL  207 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~-~~~i~~l  207 (368)
                      +-.+.-|+.|+.++... ++.+...- +...-..++.+++.  ...+++...+.+++-+.... .+.+.+-. ...+.-+
T Consensus       163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH
Confidence            55678888999999884 55555443 33344556666665  45788899999988887664 34322221 2246667


Q ss_pred             HHHhccccchhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhc---CCCHHHHHHHHHHHHHhhcC--------
Q 017651          208 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVH---SNDEEVLTDACWALSYLSDG--------  274 (368)
Q Consensus       208 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~~l~~~--------  274 (368)
                      +.+.+......+.+-++..+.|++...|...+.  ...+-+...++.|.   ..|++++.+.-..=+.|...        
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            777766668889999999999999854433322  12332334444443   34666655543332222110        


Q ss_pred             -------------C---------hHHHHHHHHc--CChHHHHHhcCCCCcc-hHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017651          275 -------------T---------NDKIQAVIEA--GVCPRLVELLGHPSPS-VLIPALRTVGNIVTGDDFQTQCIITYGA  329 (368)
Q Consensus       275 -------------~---------~~~~~~~~~~--~~~~~L~~lL~~~~~~-v~~~a~~~l~nl~~~~~~~~~~~~~~g~  329 (368)
                                   +         ....+.+.+.  .++..|..+|.+..+. ...-||.-|+.++...|+....+...|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence                         0         1233444443  5788899999777665 6788999999999999999998889999


Q ss_pred             hHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          330 LPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       330 l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      -..++.++.|+ +++||-+|.-++.-+..
T Consensus       401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         401 KEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            99999999999 99999999999877654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.36  E-value=2.3e-05  Score=71.15  Aligned_cols=188  Identities=26%  Similarity=0.345  Sum_probs=145.0

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      ..++.+++++.+++ +.++..+++.++.+...           -+++.+..++.+.++.++..++.+|+++-..  .   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDP--E---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--h---
Confidence            35888999999987 89999999997776652           3789999999999999999999999987422  2   


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH------------HHHHHH
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE------------EVLTDA  264 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~------------~v~~~a  264 (368)
                            .+++++..+..+.+..++..+.++|..+-..          ..++.++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  5889999995578999999999999988754          236666777766542            344445


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCcc
Q 017651          265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS  344 (368)
Q Consensus       265 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~  344 (368)
                      ...++.+-.           ...++.+...+.+....++..|..+++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444444432           234777888888888899999999999998765         24456677778887 888


Q ss_pred             HHHHHHHHHHHHhc
Q 017651          345 IKKEACWTISNITA  358 (368)
Q Consensus       345 v~~~a~~~l~nl~~  358 (368)
                      +|..++.+++.+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            88888888887764

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.36  E-value=1.7e-06  Score=64.62  Aligned_cols=132  Identities=18%  Similarity=0.186  Sum_probs=107.4

Q ss_pred             hHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 017651          162 VPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  240 (368)
Q Consensus       162 i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  240 (368)
                      +..|+.-. ...+.+-+++...-|.|+|.|. ..-..+.+..+++.++..| ..+++.+...+...|+|+|-++.+..+.
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d~~n~~~I   95 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLDKTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccChHHHHHH
Confidence            44444433 3468899999999999999986 4558888999999999999 8889999999999999999887777777


Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (368)
Q Consensus       241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL  295 (368)
                      ...+.+|.++..+.++...+...++.++.+|+.+.....+.+....++..+.++-
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            7788999999999999999999999999999988766556666555555555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.35  E-value=7.8e-06  Score=69.87  Aligned_cols=189  Identities=16%  Similarity=0.134  Sum_probs=119.8

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCC-CCCchHHHHh--cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC
Q 017651           84 WSDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQ--SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~-~~~~~~~~i~--~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  160 (368)
                      .+.+++.+..|+..|+.++.+. .......++.  ..++..+...+.+.. ..+...|+.++..++..........++ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            4688999999999999998764 1122222221  155667777777766 689999999999998754444444433 4


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC--CCC
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP--QPP  238 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~  238 (368)
                      .+|.|+..+.++...+++.|..+|..|+...+....      .+..++.....+.++.++..++..+..+...-+  ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            789999999999999999999999999987651111      223333333378899999999988888876654  121


Q ss_pred             hh---hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651          239 FD---QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  280 (368)
Q Consensus       239 ~~---~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~  280 (368)
                      ..   ....+.+.+..++.+.+++|+..|-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            11   1256788899999999999999999999888765444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.33  E-value=2.3e-05  Score=77.95  Aligned_cols=267  Identities=16%  Similarity=0.161  Sum_probs=176.0

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC----CC
Q 017651           76 LPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG----TS  150 (368)
Q Consensus        76 i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~----~~  150 (368)
                      ++.+...+.+ ...+.+..|+..|..+...-    .++..-.-++|.++.++.++. ++||..|+..|+.+...    .+
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i----~de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYI----DDEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc----chHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4444444443 34567788888888774321    122223457999999999998 89999999988886542    22


Q ss_pred             cchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------------------hhh-----------HHHHHh
Q 017651          151 ENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS------------------PRC-----------RDLVLS  200 (368)
Q Consensus       151 ~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~------------------~~~-----------~~~i~~  200 (368)
                      .....+.+ -++|.|-.++.+ ....++-.-+.+|+.||...                  +..           ...+..
T Consensus       499 ~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~  577 (1431)
T KOG1240|consen  499 SDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH  577 (1431)
T ss_pred             ccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence            22333333 478899999988 44555555556665554211                  100           000111


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651          201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ  280 (368)
Q Consensus       201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~  280 (368)
                        .+...+.-|..++++-+++..+..|.-||-.....  ....-+++.|..+|++.|+.++..-...|..++-.-.-   
T Consensus       578 --~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---  650 (1431)
T KOG1240|consen  578 --TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---  650 (1431)
T ss_pred             --HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---
Confidence              12223322325666778888888888888653211  11124788999999999999999888888877643111   


Q ss_pred             HHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       281 ~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .-++..++|.|.+-|.++.+.+...|++++.-|+...--....+.  .+++....+|-++ +..+|..+|..|..++.
T Consensus       651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            113456789999999999999999999999999875543333333  3677788899999 99999999999988775

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=6e-06  Score=75.40  Aligned_cols=180  Identities=14%  Similarity=0.120  Sum_probs=132.6

Q ss_pred             HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCC
Q 017651          179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSND  257 (368)
Q Consensus       179 ~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~lL~~~d  257 (368)
                      .++.+|-.++..-...|.-+....+.++|+++| ..++..+..-+...+.|+.-...+ .......+++..|+.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            344445555555556777788888899999999 667776666777888887765433 334445789999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChH---HHHHHHHc----CC
Q 017651          258 EEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCIITY----GA  329 (368)
Q Consensus       258 ~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~---~~~~~~~~----g~  329 (368)
                      ..++....|.+..+..+.....+ .++..-++..++.+.+++...++..++.++.|+.+.+..   ..+.++..    -+
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999876554432 355556789999999999999999999999999874432   22222221    24


Q ss_pred             hHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          330 LPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       330 l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      ...|++-+... +|-.-.+.|+.|.|+++.+
T Consensus       567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d  596 (743)
T COG5369         567 FKRLIDKYEEN-NPMEILEGCYILVRNAACD  596 (743)
T ss_pred             HHHHHHHHHhc-CchhhhhhHHHHHHHHhcc
Confidence            45566666676 7777788899999999844

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00012  Score=70.11  Aligned_cols=29  Identities=28%  Similarity=0.271  Sum_probs=16.3

Q ss_pred             CCchHHHhhhHHHHHHHHHHhhh--HHHHhh
Q 017651           20 VDADEGRRRREDNMVEIRKNKRE--ESLLKK   48 (368)
Q Consensus        20 ~~~~~~r~kr~~~~~~lRk~kr~--~~l~~k   48 (368)
                      ++..|-|+--+.....||+.-|+  .-..+|
T Consensus        21 kT~AEEr~vI~kE~a~IRa~ire~~~d~~~r   51 (866)
T KOG1062|consen   21 KTAAEERAVIQKECAAIRASIREPTNDPRKR   51 (866)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            34444454344455688888887  444333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.29  E-value=3.6e-06  Score=60.13  Aligned_cols=87  Identities=29%  Similarity=0.438  Sum_probs=70.0

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          119 VPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       119 i~~Lv~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      ||.|++.| ++++ +.+|..++++|+.+-.  +         .+++.|+.+++++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 6566 9999999999995432  1         35899999999999999999999999983         


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  228 (368)
                        ....++.|.+++.++++..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              11278999999966667777888888874

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.27  E-value=6.1e-05  Score=73.29  Aligned_cols=275  Identities=13%  Similarity=0.125  Sum_probs=166.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      .|++.+.++|.+.++-|+.-|-+-+... ....+.--+..++..++++|++.+ +++|..|.+|++-+++.-.+.+   +
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l   83 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L   83 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence            7788888999999999998877665532 222222234567899999999988 8999999999999997432221   1


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH----hccc-cchhHHHHHHHHHHHhhc
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ----LNER-AKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~----l~~~-~~~~~~~~a~~~L~~l~~  232 (368)
                      + ..+..|+.-+-+.....+..+.-.|--...+-+..........+++.++..    +... +...++..++-.+..+-.
T Consensus        84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence            1 235556665545445555544433332222222111222223334444444    4322 233366666666665444


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhcCC-CCcchHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l  310 (368)
                      ....--.....+++..+..-+.++-.-|+..++.+|+.++...+. ...     +++..|+.-|.. .++.....-+.+|
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL  237 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence            332111113346677777778888889999999999999865432 222     346667766643 3444445556677


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhh---CCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      +.++.........-.+ .++|.+.+..   +.. +.++|+.+.-++.-+..-+|..|-
T Consensus       238 ~~i~r~ag~r~~~h~~-~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~  293 (1233)
T KOG1824|consen  238 AAICRQAGHRFGSHLD-KIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEIL  293 (1233)
T ss_pred             HHHHHHhcchhhcccc-hhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhc
Confidence            7776543322221111 5677787777   444 788999999998888876665543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.26  E-value=1.2e-06  Score=56.42  Aligned_cols=55  Identities=27%  Similarity=0.446  Sum_probs=47.7

Q ss_pred             cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHH
Q 017651          300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (368)
Q Consensus       300 ~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl  356 (368)
                      |.+|..|+++||+++...+........ .+++.|..+|.++ ++.||..|+|+|+||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            468999999999999888877765444 7999999999998 789999999999986

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.24  E-value=2.5e-06  Score=60.97  Aligned_cols=87  Identities=32%  Similarity=0.471  Sum_probs=70.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651          246 LPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI  324 (368)
Q Consensus       246 ~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  324 (368)
                      +|.|++.| .++++.++..++++|+.+-   +.        .+++.|..+++++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888888 7889999999999999553   21        24888999999999999999999999883          


Q ss_pred             HHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651          325 ITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (368)
Q Consensus       325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~  354 (368)
                       +...++.|..++.++.+..+|..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12478889999988746677999999885

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00045  Score=65.47  Aligned_cols=270  Identities=13%  Similarity=0.092  Sum_probs=169.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCCcchH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      +..+.+.|.+.|+.....|+.++.++-+.+   ....+ ..+ |+   ++|-++++ +-++..|+-||..+...+++.. 
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-~~D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~-  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-ADD-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-hhh-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence            455566667788888888888888885432   12221 111 33   55555432 5788999999999988766532 


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc------------ccchhHHHH
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE------------RAKLSMLRN  222 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~------------~~~~~~~~~  222 (368)
                        -..+.+..++.+|.+.+-.+...+...+.-|+...|+.....+.. .+..|......            -+.+-++..
T Consensus       184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence              223578899999999888888888888888887766532221111 23333332211            134566777


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC----------HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 017651          223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND----------EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  292 (368)
Q Consensus       223 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d----------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~  292 (368)
                      ++..|.++-.   ..+..........+-.+|...+          .......++-.-+++.+-+..-+.+.  ..+..|-
T Consensus       261 l~rlLq~~p~---~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg  335 (938)
T KOG1077|consen  261 LLRLLQIYPT---PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG  335 (938)
T ss_pred             HHHHHHhCCC---CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence            7777776622   1111222233344444443211          12333344444445443332223333  3578899


Q ss_pred             HhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhh
Q 017651          293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ  365 (368)
Q Consensus       293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~  365 (368)
                      .+|.+.+..+|--|+..++.+++... ..+.+-.+  .+.++..|+...+..+|+.|.-.|.-+|. +|..+|-
T Consensus       336 ~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV  406 (938)
T KOG1077|consen  336 QFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIV  406 (938)
T ss_pred             HHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHH
Confidence            99999999999999999999998754 34444444  78888999855488999999999999997 7777663

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.19  E-value=4.1e-05  Score=72.66  Aligned_cols=262  Identities=18%  Similarity=0.218  Sum_probs=160.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCC----CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           79 MVAGVWSDDSSLQLEATTQFRKLLSIE----RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        79 l~~~l~~~~~~~~~~a~~~l~~l~s~~----~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      |.+.|...++++.-..+.++..+.+.-    ..+++.     +++|.|...|++.+ ..++..++..++.|+...++...
T Consensus       846 LyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~-----dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~  919 (1172)
T KOG0213|consen  846 LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK-----DLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVS  919 (1172)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh-----hhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCC
Confidence            334445556665444444444333321    234443     56999999999988 89999999999999986666432


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch-hhHHHHH----------------------h-cC---ChHH
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SP-RCRDLVL----------------------S-QG---ALIP  206 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~-~~~~~i~----------------------~-~~---~i~~  206 (368)
                      .--.--+---|+.+|.+.+.+++..|..++|.|+.- .| ..-..++                      + +|   ++|.
T Consensus       920 aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPa  999 (1172)
T KOG0213|consen  920 AREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPA  999 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHH
Confidence            222222334577788888999999999999999742 11 1111111                      1 12   2333


Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (368)
Q Consensus       207 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  286 (368)
                      |+.-. ..++..++.-++.+++.+......-....+..+.|.|-+.|.+.|..-+..|+.++..++-+....       |
T Consensus      1000 lmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~-------g 1071 (1172)
T KOG0213|consen 1000 LMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT-------G 1071 (1172)
T ss_pred             HHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc-------C
Confidence            33332 345667777778888877766444444455667788888888889989999999999998774332       3


Q ss_pred             ChHHHHHhc-------CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-
Q 017651          287 VCPRLVELL-------GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-  358 (368)
Q Consensus       287 ~~~~L~~lL-------~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-  358 (368)
                      ....++.+|       -.++|.+......++-.+...-.       ...++.++.+-|-|+ ...|| ..-|.+.|... 
T Consensus      1072 ~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-------~~~~~~Y~~QGLFHP-arkVR-~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1072 CEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG-------PQAMLKYCLQGLFHP-ARKVR-KRYWTVYNSMYH 1142 (1172)
T ss_pred             cHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhccCc-HHHHH-HHHHHHHHhHhh
Confidence            344444444       34566666666665555432111       112356667767777 55555 46676666654 


Q ss_pred             CCHHH
Q 017651          359 GNRDQ  363 (368)
Q Consensus       359 ~~~~~  363 (368)
                      ++++.
T Consensus      1143 ~~~da 1147 (1172)
T KOG0213|consen 1143 GSQDA 1147 (1172)
T ss_pred             cccch
Confidence            55544

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=2.4e-05  Score=74.66  Aligned_cols=71  Identities=21%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      ...+.+.++++++..+..|+.+..++.    ..+.+...+.|+++.|-.++.+++ |.+...|+.+|..|...++.
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~----~~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLF----DIDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPS  193 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhh----cCChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCC
Confidence            567788888999999999999999885    445667778999999999999777 99999999999999986554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=0.00014  Score=69.60  Aligned_cols=234  Identities=15%  Similarity=0.127  Sum_probs=165.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch---HHHhhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhh
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT---KVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVA  188 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla  188 (368)
                      +...+.+|+..+ .+-|..++..++++...++...   +.+.++=+.+.+-++|.+       +....+..|+.+|+.++
T Consensus         7 l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    7 LEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            667788899888 6889999999999998655322   346677678889999987       44677889999999999


Q ss_pred             CCChhh-HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHH
Q 017651          189 GDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA  267 (368)
Q Consensus       189 ~~~~~~-~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~  267 (368)
                      .+..-. ...+..  -||.|+..+....+.++...+..+|..++..+.........+.++.|.+.+.+ .+.....++.+
T Consensus        86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            854321 123333  59999999966666699999999999999665555555557999999999877 56677888888


Q ss_pred             HHHhhcCChH-----HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH-----HHHHHHcCChHHHHHhh
Q 017651          268 LSYLSDGTND-----KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-----TQCIITYGALPYLLGLL  337 (368)
Q Consensus       268 l~~l~~~~~~-----~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~-----~~~~~~~g~l~~l~~ll  337 (368)
                      +.+++.....     ....+  ..+++.+...+.......+-.++..++++....+..     ...-+-..+...+..+|
T Consensus       163 L~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8887754331     11111  134566666666666777888999999997766311     11122234566677788


Q ss_pred             CCCCCccHHHHHHHHHHHHhc
Q 017651          338 THSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       338 ~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++.-.+.-|..|....+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            776566667777777766664

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=0.00037  Score=65.29  Aligned_cols=266  Identities=13%  Similarity=0.157  Sum_probs=165.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ..+|.++....+..+.++..|..+...+.+.-..-.+..     ++|.++.-+.... ..-+..++..|+.++...+.+.
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~k-WrtK~aslellg~m~~~ap~qL  289 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQL  289 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHH
Confidence            357777777777778888877777776655431222222     2454444444334 5778888999998888655544


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .... ..++|.+...|-+..+++++++..+|.+++.--.. .+ +..  .+|.|++.+ .++...+. .+...|+.-.-.
T Consensus       290 s~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~d-I~~--~ip~Lld~l-~dp~~~~~-e~~~~L~~ttFV  362 (569)
T KOG1242|consen  290 SLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PD-IQK--IIPTLLDAL-ADPSCYTP-ECLDSLGATTFV  362 (569)
T ss_pred             HHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HH-HHH--HHHHHHHHh-cCcccchH-HHHHhhcceeee
Confidence            4444 57999999999999999999999999999753221 11 222  578888888 44432222 222222211110


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT--NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  311 (368)
                       .........-++|.|.+-+...+..+...++.++.|++.--  +.....++. .++|.+-..+....|++|..+.+++|
T Consensus       363 -~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  363 -AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             -eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHH
Confidence             11111122335666666666677888899999999999653  222222221 35566666666778999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .+...-.+..  +  .+.+|.+...+.+.....-+..++-.++..++
T Consensus       441 ~l~e~~g~~~--f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~  483 (569)
T KOG1242|consen  441 ALLERLGEVS--F--DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA  483 (569)
T ss_pred             HHHHHHHhhc--c--cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence            8875433211  1  46677777777655344455556666666555

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=4.3e-05  Score=71.56  Aligned_cols=263  Identities=19%  Similarity=0.112  Sum_probs=168.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHH---HHHHHHh--cCCCcch
Q 017651           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAA---WALTNIA--SGTSENT  153 (368)
Q Consensus        79 l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~---~~L~~l~--~~~~~~~  153 (368)
                      +.....++|..++..|+..+..+-.+.  ..     ..-+....++.+++.+ .+||..|+   |.++|..  ....+..
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL-----~~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KL-----SKACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc--cc-----cHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            555556666666666666665552211  00     1113667888898887 79998885   5555555  1111222


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC------------------------------
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA------------------------------  203 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~------------------------------  203 (368)
                      +.-....++..++..+.+-+..++-.|+.+||.+-.-+.++-.+.++...                              
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~  354 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN  354 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence            22222347888899999988889999999998876554443333222222                              


Q ss_pred             --------------------hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHH
Q 017651          204 --------------------LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTD  263 (368)
Q Consensus       204 --------------------i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~  263 (368)
                                          ...++.-| .+.-.+++++|...+..|+...|.  +.  ...+..|+++++++...|+..
T Consensus       355 advpsee~d~~~~siI~sGACGA~VhGl-EDEf~EVR~AAV~Sl~~La~ssP~--FA--~~aldfLvDMfNDE~~~VRL~  429 (823)
T KOG2259|consen  355 ADVPSEEDDEEEESIIPSGACGALVHGL-EDEFYEVRRAAVASLCSLATSSPG--FA--VRALDFLVDMFNDEIEVVRLK  429 (823)
T ss_pred             ccCchhhccccccccccccccceeeeec-hHHHHHHHHHHHHHHHHHHcCCCC--cH--HHHHHHHHHHhccHHHHHHHH
Confidence                                22222222 223347899999999999987543  22  257888999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCc
Q 017651          264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK  343 (368)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~  343 (368)
                      |+.++..++.+      ..+....++.+...|.+.++++|+..-..|++.-..+-+.....     +..++..|..  -|
T Consensus       430 ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~k--yP  496 (823)
T KOG2259|consen  430 AIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMC-----VAHLLKNLGK--YP  496 (823)
T ss_pred             HHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhhh--CC
Confidence            99999988865      22334457788888888899999988888777654443333322     2233333332  23


Q ss_pred             cHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          344 SIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       344 ~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      .=+-+...+++.|...++.+++.+
T Consensus       497 qDrd~i~~cm~~iGqnH~~lv~s~  520 (823)
T KOG2259|consen  497 QDRDEILRCMGRIGQNHRRLVLSN  520 (823)
T ss_pred             CCcHHHHHHHHHHhccChhhHHHH
Confidence            446677778888888888877654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.00095  Score=60.02  Aligned_cols=229  Identities=13%  Similarity=0.141  Sum_probs=161.3

Q ss_pred             CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC-----C----cchHHHhhCCChHHHHHhhCCCCH---
Q 017651          107 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-----S----ENTKVVIDHGAVPIFVKLLASPSD---  174 (368)
Q Consensus       107 ~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L~~lL~~~~~---  174 (368)
                      +.....+++.++++.|+.+|.+.+ .++....+..|..++..+     .    .....+++.++++.|++-+.--+.   
T Consensus       115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            344456889999999999999998 799999999999887632     1    234567888999999998864333   


Q ss_pred             ---HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHH
Q 017651          175 ---DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPAL  249 (368)
Q Consensus       175 ---~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L  249 (368)
                         .-...++..+-|+..-.+.+...+.+.|.+..|+..+... .-......+...++-+.+.... .....--.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence               3345678888999998889999999999999988866433 3334455666777766665432 2111113456666


Q ss_pred             HHhhc----CC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--
Q 017651          250 AQLVH----SN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--  318 (368)
Q Consensus       250 ~~lL~----~~-----d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--  318 (368)
                      ++-+.    ++     ..+...+...+|+.+...+... ..++...++....-.++. ....+..++.+|-....+.+  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence            55542    11     2466777777787777665444 667777667665555555 55678899999999998887  


Q ss_pred             HHHHHHHHcCChHHHHHhhC
Q 017651          319 FQTQCIITYGALPYLLGLLT  338 (368)
Q Consensus       319 ~~~~~~~~~g~l~~l~~ll~  338 (368)
                      ..+..+++.+++..++.+..
T Consensus       352 ~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  352 PNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHHHHhHHHHHHHHh
Confidence            77778888877777776554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.12  E-value=1.6e-05  Score=67.97  Aligned_cols=186  Identities=14%  Similarity=0.056  Sum_probs=119.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCC--hhhHHHHHhc--CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 017651          170 ASPSDDVREQAVWALGNVAGDS--PRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA  245 (368)
Q Consensus       170 ~~~~~~v~~~a~~~L~nla~~~--~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  245 (368)
                      .+.+.+.+..++.-|..+....  ......+...  ..+..+...+ .+....+...++.++..++......-......+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l-~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQL-SDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            5678899999999998887544  1122222221  2445666666 566778899999999999987543322345778


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC-hHHHHHhcCCCCcchHHHHHHHHHHhhcCCh---HHH
Q 017651          246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLGHPSPSVLIPALRTVGNIVTGDD---FQT  321 (368)
Q Consensus       246 ~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~  321 (368)
                      +|.|++.+.+....++..|..+|..++.......      .+ ++.+...+.+.++.+|..++..+..+....+   ...
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            9999999998888999999999999997654111      12 5667777899999999999999999976554   111


Q ss_pred             HH-HHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          322 QC-IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       322 ~~-~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      .. ..-..+++.+...+.+. ++++|+.|--++..+....|+.
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHh
Confidence            11 11125788899999999 9999999888888876644443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.12  E-value=0.00012  Score=71.33  Aligned_cols=210  Identities=15%  Similarity=0.123  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL  211 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l  211 (368)
                      ..++.-|.-.|+.+-.+-..    ....+.-..++..+.+++.+++..|.++||+++.++-..        ++|-++..+
T Consensus       833 ~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~--------yLpfil~qi  900 (1233)
T KOG1824|consen  833 DSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPK--------YLPFILEQI  900 (1233)
T ss_pred             hhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHh--------HHHHHHHHH
Confidence            56777777777777664221    122344567788999999999999999999999755321        466677766


Q ss_pred             ccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651          212 NERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (368)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  290 (368)
                      ...  +.-+.-.+..|-.+.... ..........+...|.+-.....+..+.-.+.||+.|+..+++.        +++.
T Consensus       901 ~sq--pk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Llpk  970 (1233)
T KOG1824|consen  901 ESQ--PKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPK  970 (1233)
T ss_pred             hcc--hHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHH
Confidence            332  222333333333333221 11111112233333333334445667888999999999887766        5889


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      |-..+.++.+..|..++.++--.....+.-.+.++. ..+..++.+++++ +..||+.|..++.-.+-+.|.-|.
T Consensus       971 L~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen  971 LKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred             HHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHH
Confidence            999999999999998888887776666655554444 5677888999999 999999999999888777776554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0004  Score=64.16  Aligned_cols=233  Identities=15%  Similarity=0.158  Sum_probs=151.0

Q ss_pred             HHHHHHhh----cCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHH----Hh
Q 017651           76 LPAMVAGV----WSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTN----IA  146 (368)
Q Consensus        76 i~~l~~~l----~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~----l~  146 (368)
                      ++.++..|    ...++..+...+.=+.-+-+   .|..+.+- -..+++-|..+|.++. ++++..+-.++.+    |.
T Consensus       165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~  240 (675)
T KOG0212|consen  165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIR  240 (675)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHh
Confidence            44444444    45677777766666665543   33443322 2456778889999888 8998776665555    44


Q ss_pred             cCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHH---H
Q 017651          147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN---A  223 (368)
Q Consensus       147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~---a  223 (368)
                      +. |...   --...++.++.-+.++++.++..|+.-+..+..-.+.. -...-.|++..++.++...+...+...   .
T Consensus       241 s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  241 SS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             cC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            32 2221   11246789999999999999998887776665443321 123345566777777733332223222   2


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchH
Q 017651          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL  303 (368)
Q Consensus       224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~  303 (368)
                      -..+..++.............++..+.+.+.++..+.+..++.-+..+-...+... ......+++.|+.-|++++..+.
T Consensus       316 n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vv  394 (675)
T KOG0212|consen  316 NGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVV  394 (675)
T ss_pred             HHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHH
Confidence            22344555443222223446789999999999999999999888877776555442 23334788999999999999999


Q ss_pred             HHHHHHHHHhhcCCh
Q 017651          304 IPALRTVGNIVTGDD  318 (368)
Q Consensus       304 ~~a~~~l~nl~~~~~  318 (368)
                      ..++..++++|....
T Consensus       395 l~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  395 LLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHHHHhcCcc
Confidence            999999999998654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=8.8e-05  Score=70.94  Aligned_cols=188  Identities=20%  Similarity=0.230  Sum_probs=123.7

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      +...+...+++.+ +.+|..++-+..++-..+   .+.+...|.++.|.+++.++++.+...|+.+|..|....+..-..
T Consensus       122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            3567778888888 899999999999887743   456778899999999999999999999999999998665431111


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                      .+..-.+..++..+    +.-....-+..+-.++...|... .....++..+...|++.++.+...+...+.++...-..
T Consensus       198 ~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~  272 (734)
T KOG1061|consen  198 ELNPQLINKLLEAL----NECTEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ  272 (734)
T ss_pred             cccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence            11222344444444    22223334445555555555444 33346777788888888888888888888888765444


Q ss_pred             HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      ... .+-..+-+.++.++++.. .++.-|++-+.-+...
T Consensus       273 ~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~  309 (734)
T KOG1061|consen  273 VNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK  309 (734)
T ss_pred             HHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence            222 222245555666666555 6666666555555443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=0.0016  Score=64.54  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCchH-----HHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHH
Q 017651           90 LQLEATTQFRKLLSIERSPPIE-----EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI  164 (368)
Q Consensus        90 ~~~~a~~~l~~l~s~~~~~~~~-----~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  164 (368)
                      -..-++.+|+++++..  |...     +..--|..+.++.++....++.++..|+.++..++. +.++...+...|.+..
T Consensus      1741 ~v~m~LtAL~Nli~~n--PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN--PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHhhC--cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            4566889999998864  3222     223357788888888876658999999999988777 7899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          165 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       165 L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      |+.+|.+ -+..++.++.+|..++... +......++|++..+..++....+++.+..++..+..+.-.+
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence            9998875 4678999999999999876 456777888999999999978888888999999999988776

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.09  E-value=4.6e-06  Score=53.64  Aligned_cols=55  Identities=38%  Similarity=0.684  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV  187 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  187 (368)
                      |.+|..|+|+|++++...++...... ..+++.|+.+|.++++.|+..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            57899999999998876555555543 46899999999999999999999999986

...

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.0029  Score=57.06  Aligned_cols=242  Identities=13%  Similarity=0.116  Sum_probs=170.7

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC----CCC----chHHHHhcCcHHHHHHhhcCCC-----CHHHHHHHH
Q 017651           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIE----RSP----PIEEVIQSGVVPRFVEFLMRED-----YPQLQFEAA  139 (368)
Q Consensus        73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~----~~~----~~~~~i~~g~i~~Lv~lL~~~~-----~~~v~~~a~  139 (368)
                      +.+++.++.+|.+++.++-...+..+..+...+    ..+    .++.+++.++++.|++-+..-+     ...-...++
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            467888999999999999888888888886542    111    2466789999999999887543     123445667


Q ss_pred             HHHHHHhcCCCcchHHHhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----c
Q 017651          140 WALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----E  213 (368)
Q Consensus       140 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----~  213 (368)
                      .++-|+..-.+.....+++.|.+..|+.-+..  +...-...|..+|+-+..++.+.+..+...+++..+++.+.    +
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            78888888778888888888988888875543  44566778888888888888778888888889999998874    1


Q ss_pred             c----cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCC
Q 017651          214 R----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGV  287 (368)
Q Consensus       214 ~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~  287 (368)
                      +    +..+...+...+|+.+.....+........++....-+++. ....+..++.+|-+...+++  +....+++..+
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG  362 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG  362 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence            2    13455666666666666654444444445566555555544 45677889999999988876  66677888777


Q ss_pred             hHHHHHhc-CCCC---------cchHHHHHHHHHHhhc
Q 017651          288 CPRLVELL-GHPS---------PSVLIPALRTVGNIVT  315 (368)
Q Consensus       288 ~~~L~~lL-~~~~---------~~v~~~a~~~l~nl~~  315 (368)
                      +..+..+. +.+.         ...-+..+.+|+.+..
T Consensus       363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            77766654 3322         2344667777776654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0024  Score=55.46  Aligned_cols=283  Identities=13%  Similarity=0.149  Sum_probs=186.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF--VEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~L--v~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      .++.++..+-.+|.++-..|...+..+...  +.....+++++....+  ..+--..+ .-.|......+..|.+-+++.
T Consensus       129 ilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpes  205 (524)
T KOG4413|consen  129 ILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPES  205 (524)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHH
Confidence            467777788888888888888888887542  3445556666665544  22222333 477888889999999988888


Q ss_pred             hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHh
Q 017651          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNF  230 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l  230 (368)
                      ...+-..|.+..|..-|+. .+.-+.-.++.....++... ..++.+.+.|.|+.+.+.+...+ ++--.-.++..+..+
T Consensus       206 aneckkSGLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf  284 (524)
T KOG4413|consen  206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF  284 (524)
T ss_pred             HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence            8889999999999988886 66777888999999998654 35677888888999988884322 222222233333333


Q ss_pred             hcCCC----CC--ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC--hHHHH-HhcCCCCcc
Q 017651          231 CRGKP----QP--PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRLV-ELLGHPSPS  301 (368)
Q Consensus       231 ~~~~~----~~--~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~L~-~lL~~~~~~  301 (368)
                      .....    .+  .....-..+....+++..+|+..+..|..+++.+-+.... .+.+.+.|-  ..+++ +........
T Consensus       285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnaha  363 (524)
T KOG4413|consen  285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHA  363 (524)
T ss_pred             hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccc
Confidence            32210    11  1111123444556677889999999999999988776443 366666653  33333 333444455


Q ss_pred             hHHHHHHHHHHhhcCCh-------------HHHHHHHHc-------CChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651          302 VLIPALRTVGNIVTGDD-------------FQTQCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       302 v~~~a~~~l~nl~~~~~-------------~~~~~~~~~-------g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      -+..+++++.+|+....             ..+..+++.       .-+..+..+++.+ .++++-.+..++..+++...
T Consensus       364 kqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPW  442 (524)
T KOG4413|consen  364 KQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPW  442 (524)
T ss_pred             hHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcH
Confidence            67888999999885321             111222221       3466677888888 89999999988888887544


Q ss_pred             HH
Q 017651          362 DQ  363 (368)
Q Consensus       362 ~~  363 (368)
                      -+
T Consensus       443 al  444 (524)
T KOG4413|consen  443 AL  444 (524)
T ss_pred             HH
Confidence            33

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00071  Score=62.60  Aligned_cols=269  Identities=12%  Similarity=0.130  Sum_probs=163.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ++.|+++|..+.++++..+-.++..++..-++.+.. +--...++.++.-+.+++ +.+|..|+.-+..+..-.+ ..-.
T Consensus       210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s-~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g-~~~l  286 (675)
T KOG0212|consen  210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS-MDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPG-RDLL  286 (675)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc-cCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCC-cchh
Confidence            567788888888888866655555544321111111 112345788888888888 9999999877777776322 2222


Q ss_pred             HhhCCChHHHHHhhCCCCH-HHHHHHHHH---HHHhhCCChhhHHHHHhcC-ChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          156 VIDHGAVPIFVKLLASPSD-DVREQAVWA---LGNVAGDSPRCRDLVLSQG-ALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~---L~nla~~~~~~~~~i~~~~-~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ..-.|++..++.++.+..+ .+++.+...   |..+.... ..... ++.| .++.+.+.+ .++..+.+..++.-+..|
T Consensus       287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l  363 (675)
T KOG0212|consen  287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYL-SDDREETRIAVLNWIILL  363 (675)
T ss_pred             hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHh-hcchHHHHHHHHHHHHHH
Confidence            2334677777777776554 355444333   23333221 11111 3333 456666666 677777777777666666


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          231 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      -...|..-......+++.|+.-|.+.+.+|...++..++++|..+...  ..  -.++..|++....+..-+...+-.++
T Consensus       364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~lII  439 (675)
T KOG0212|consen  364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNLII  439 (675)
T ss_pred             HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhHHH
Confidence            665566666666889999999999999999999999999999765432  00  11233344444555455566666777


Q ss_pred             HHhhcC-ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          311 GNIVTG-DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       311 ~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      -.+|.- +++        .+...+..+|...++-.....-..+|.++.-.++|
T Consensus       440 RqlC~lL~aE--------~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStE  484 (675)
T KOG0212|consen  440 RQLCLLLNAE--------RIYRSIADILEREENLKFASTMVQALNTILLTSTE  484 (675)
T ss_pred             HHHHHHhCHH--------HHHHHHHHHHhccccchHHHHHHHHHHhhhcccHH
Confidence            776642 121        23444555565554556666666666666655554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.99  E-value=0.00023  Score=61.22  Aligned_cols=228  Identities=16%  Similarity=0.131  Sum_probs=146.1

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHHhhC-CC
Q 017651           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDH-GA  161 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~  161 (368)
                      +=++-.+..|+.++.++...  .+.+..+. +..+-..+++++++.- ..++|..++.+++-++. ++++.+.+-+. ..
T Consensus       160 ~i~~lTrlfav~cl~~l~~~--~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dl  236 (432)
T COG5231         160 LIDFLTRLFAVSCLSNLEFD--VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence            33455677777777777542  23333333 4456677888887632 16899999999999888 46665443332 35


Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccc--cchhHHHHHHHHHHH--------
Q 017651          162 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNER--AKLSMLRNATWTLSN--------  229 (368)
Q Consensus       162 i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a~~~L~~--------  229 (368)
                      +..|+++.+. ....+-+.|+.++.|++..+|. +-....-.|-+.+-++.|...  .|+++....-..=+.        
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            6666777665 3467888999999999975532 222222333455666666322  244443332221111        


Q ss_pred             ---------hh----cCCCC-CChh--------h---hhchHHHHHHhhcCCCHH-HHHHHHHHHHHhhcCChHHHHHHH
Q 017651          230 ---------FC----RGKPQ-PPFD--------Q---VRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVI  283 (368)
Q Consensus       230 ---------l~----~~~~~-~~~~--------~---~~~~~~~L~~lL~~~d~~-v~~~a~~~l~~l~~~~~~~~~~~~  283 (368)
                               |-    .+.|. ....        .   .-.++..|.++++.+++. ...-||.-+..+....++....+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                     11    11111 0000        0   024667888888887665 566688888888888888888899


Q ss_pred             HcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      +.|+=..++.+++|++++++-.|+.++..+.+
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999887654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.0022  Score=63.64  Aligned_cols=260  Identities=17%  Similarity=0.209  Sum_probs=165.0

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      ..++-+...+. ..++.++..|+..+..+.+.  .++...+..+|.+..|+.+|-+.  |..|..++..|..+++ +++.
T Consensus      1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~i 1845 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQI 1845 (2235)
T ss_pred             cccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcHH
Confidence            44555666665 46778899999888877653  68888999999999999999764  6899999999999999 5788


Q ss_pred             hHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---hhhHHHHHhc---C-------ChHHHHHHhcc-----
Q 017651          153 TKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDS---PRCRDLVLSQ---G-------ALIPLLAQLNE-----  213 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~---~~~~~~i~~~---~-------~i~~l~~~l~~-----  213 (368)
                      .....+.|++..+..++. +.++..+.+++..++.+..+.   |..+-.++..   +       .-+..+..+..     
T Consensus      1846 ~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnP 1925 (2235)
T KOG1789|consen 1846 GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENP 1925 (2235)
T ss_pred             HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCc
Confidence            888888899888888665 466888999999999886542   2211111100   0       00111111100     


Q ss_pred             --------------------------------------------------------------------------------
Q 017651          214 --------------------------------------------------------------------------------  213 (368)
Q Consensus       214 --------------------------------------------------------------------------------  213 (368)
                                                                                                      
T Consensus      1926 ELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LL 2005 (2235)
T KOG1789|consen 1926 ELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELL 2005 (2235)
T ss_pred             ccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------ccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          214 ----------RAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       214 ----------~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                                ++......-...++..|.+..|.... .---|.+|.++..+...+..+-..++..|..|+.+ .-..+.+
T Consensus      2006 ek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AM 2084 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAM 2084 (2235)
T ss_pred             HHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHH
Confidence                      00011111122222222222211111 11134556666555555555557788888888876 3445677


Q ss_pred             HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhCCC
Q 017651          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                      .....+..++..+... +...-.|+.+|-.+... .++.....+..|++|+|+.+|...
T Consensus      2085 A~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             hccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            7777777788877543 34455788888888653 345555677889999999999754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.95  E-value=0.00062  Score=68.25  Aligned_cols=233  Identities=17%  Similarity=0.131  Sum_probs=147.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCC-CCchHH-HHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC--
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEE-VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--  150 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~-~~~~~~-~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--  150 (368)
                      .+|.++.++..+...+|..|+..|..++..-+ -++.+. +...-++|.|-.++.+.+...+|..-+.+|+.+|..-.  
T Consensus       463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF  542 (1431)
T KOG1240|consen  463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF  542 (1431)
T ss_pred             hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH
Confidence            47888889999999999999999999876432 233333 44566788898988874434566665666666554210  


Q ss_pred             -cchHHHhhC-------------------------CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 017651          151 -ENTKVVIDH-------------------------GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL  204 (368)
Q Consensus       151 -~~~~~~~~~-------------------------g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i  204 (368)
                       +....+-.+                         ++=.....+|.++.+-|+...+..|+-||..--   ..-.+.-.+
T Consensus       543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~ksND~iL  619 (1431)
T KOG1240|consen  543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEKSNDVIL  619 (1431)
T ss_pred             HHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcccccchH
Confidence             011111111                         112333445555555666655555555552100   000011146


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (368)
Q Consensus       205 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  284 (368)
                      +.|+..| .+.|..++....-.+.-+|-.-.  .....+.++|.|.+-|.+..+.|...|+.+|.-|+...--....++ 
T Consensus       620 shLiTfL-NDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-  695 (1431)
T KOG1240|consen  620 SHLITFL-NDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-  695 (1431)
T ss_pred             HHHHHHh-cCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-
Confidence            6777777 56677776666666655543311  1123356889999999999999999999999999965432222233 


Q ss_pred             cCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       285 ~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                       .+++....+|-+++.-+|..++.+|..++.
T Consensus       696 -~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  696 -DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence             467888899999999999999999998874

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.0037  Score=60.24  Aligned_cols=139  Identities=21%  Similarity=0.205  Sum_probs=89.5

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 017651          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  203 (368)
Q Consensus       124 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~  203 (368)
                      ++..++. +-||..|+.++..+-+-.++....+     +..+-.+|.+.++-|.-.|+.++-.+|-+.-   +.+  ++-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            3444555 8899999999998887666666544     3455667888888888899999888885532   222  224


Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhchHHHHHHhhc
Q 017651          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF----------------------------DQVRPALPALAQLVH  254 (368)
Q Consensus       204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~~~~L~~lL~  254 (368)
                      ...+.++| .+-++--+..+..+|...|+.. +.+..                            .-..-++...-.+|+
T Consensus       219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            66677776 4444555566667777777654 22211                            001223444555667


Q ss_pred             CCCHHHHHHHHHHHHHhhcC
Q 017651          255 SNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       255 ~~d~~v~~~a~~~l~~l~~~  274 (368)
                      +.++.|...++.++.+++..
T Consensus       298 S~n~sVVmA~aql~y~lAP~  317 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPK  317 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCH
Confidence            77788888888888877743

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.00066  Score=58.28  Aligned_cols=228  Identities=16%  Similarity=0.140  Sum_probs=142.4

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      ...++.++.+.+ |.++..|+..+..++..   ..+.+..  .-.++.+.+++....+  .+.|+.+|.|++.+. ..++
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHH
Confidence            446889999998 99999999999998885   2222222  2467889999987666  788999999999885 5778


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh--h-----hchHHHHHHhhcCC-C-HHHHHHHHHH
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ--V-----RPALPALAQLVHSN-D-EEVLTDACWA  267 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~-----~~~~~~L~~lL~~~-d-~~v~~~a~~~  267 (368)
                      .+++. ++..++..+ .++.......+|..++|+++.+.......  .     .+++.....+..++ + ..-..+.+..
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            87776 666777777 55556677889999999998753211111  0     23333333333332 1 1235667778


Q ss_pred             HHHhhcCChHHHHHHHHcCC--hHHHHHhcCCCCcch-HHHHHHHHHHhhcCChHHHHHHHHc--CChHHHH--------
Q 017651          268 LSYLSDGTNDKIQAVIEAGV--CPRLVELLGHPSPSV-LIPALRTVGNIVTGDDFQTQCIITY--GALPYLL--------  334 (368)
Q Consensus       268 l~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~~~~~v-~~~a~~~l~nl~~~~~~~~~~~~~~--g~l~~l~--------  334 (368)
                      +++|+.....+ ..+.+...  ...++.+ .+.+..+ +...+++|-|.|.....+-. +++.  .++|.++        
T Consensus       156 f~nls~~~~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence            88888765554 33433332  2223333 3333344 45677888888765553332 3221  2333332        


Q ss_pred             -------------HhhCCC----CCccHHHHHHHHHHHHhc
Q 017651          335 -------------GLLTHS----HKKSIKKEACWTISNITA  358 (368)
Q Consensus       335 -------------~ll~~~----~~~~v~~~a~~~l~nl~~  358 (368)
                                   +.|..+    .++.+|+.-.-+|.-+|+
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca  273 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA  273 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh
Confidence                         333211    167899998888888887

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.89  E-value=0.00015  Score=67.62  Aligned_cols=259  Identities=19%  Similarity=0.235  Sum_probs=156.0

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCCC----CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651           81 AGVWSDDSSLQLEATTQFRKLLSIER----SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (368)
Q Consensus        81 ~~l~~~~~~~~~~a~~~l~~l~s~~~----~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  156 (368)
                      +.|...++++.-..+.++..+.+..+    .|++     .|++|.|...|++.+ ..++...+..++.|+...++....-
T Consensus       653 E~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi-----~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~r  726 (975)
T COG5181         653 ENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI-----SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVR  726 (975)
T ss_pred             HhcCcccHHHHHHHHHHHHHHhhhhcccccCCch-----hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHH
Confidence            34445566665555555555544321    2333     577999999999988 7999999999999998666633221


Q ss_pred             hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch-hhHHHHH----------------------h-cCC---hHHHH
Q 017651          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SP-RCRDLVL----------------------S-QGA---LIPLL  208 (368)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~-~~~~~i~----------------------~-~~~---i~~l~  208 (368)
                      -.--+---|+..|.+.+.+++..|..++|.|+.- .| ..-+.++                      + +|.   +|.|+
T Consensus       727 EWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm  806 (975)
T COG5181         727 EWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLM  806 (975)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHH
Confidence            1112334577888889999999999999988742 11 1111111                      1 121   22222


Q ss_pred             HHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH--HHHHHHcC
Q 017651          209 AQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK--IQAVIEAG  286 (368)
Q Consensus       209 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~  286 (368)
                      .-. ..++..++.-++.+++.+.+.........+..+.|.|-+.|.+.|+.-+..|...+..|+-+.+..  .+.++.  
T Consensus       807 ~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--  883 (975)
T COG5181         807 SDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--  883 (975)
T ss_pred             hcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--
Confidence            222 234556666677777766665444444555667788888888889999999999999998664422  222221  


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG-ALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g-~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++..|..-+-.++|.+.......+-.++.        ++..| +..++.+-|-|+ ...+| .+-|+..|+..
T Consensus       884 LlNllwpNIle~sPhvi~~~~Eg~e~~~~--------~lg~g~~m~Yv~qGLFHP-s~~VR-k~ywtvyn~my  946 (975)
T COG5181         884 LLNLLWPNILEPSPHVIQSFDEGMESFAT--------VLGSGAMMKYVQQGLFHP-SSTVR-KRYWTVYNIMY  946 (975)
T ss_pred             HHHHhhhhccCCCcHHHHHHHHHHHHHHH--------HhccHHHHHHHHHhccCc-hHHHH-HHHHHHHhhhh
Confidence            12222222345667776665555555442        11122 245556666676 55555 56788877764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.89  E-value=3.6e-05  Score=45.97  Aligned_cols=39  Identities=36%  Similarity=0.664  Sum_probs=35.1

Q ss_pred             HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       319 ~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +....+.+.|+++.|+.++.++ ++.+++.|+|+|.|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            3667788999999999999987 99999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.89  E-value=3.1e-05  Score=46.26  Aligned_cols=40  Identities=38%  Similarity=0.744  Sum_probs=36.1

Q ss_pred             CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651          150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG  189 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~  189 (368)
                      ++.+..+++.|+++.|+.++.+++++++..++|+|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3467788899999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.88  E-value=7.2e-05  Score=53.96  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 017651          134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLS  200 (368)
Q Consensus       134 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~  200 (368)
                      ++...+.+|+|++..++..++.+.+.|++|.++....  +.+|.+++.|+|++.||+.++++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4677889999999999999999999999999998554  578999999999999999999998777664

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.88  E-value=0.0026  Score=59.77  Aligned_cols=233  Identities=15%  Similarity=0.135  Sum_probs=156.4

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQFEAAWALTNIASGTSENTKVVIDH  159 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  159 (368)
                      ...++....+|+++|.|++-.. ....+.+++.|+.+.++..|+..    .++++.....++|.-++...+..+..+++.
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            3567889999999999998764 44456678999999999999876    127999999999999998778777776654


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-------
Q 017651          160 -GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-------  214 (368)
Q Consensus       160 -g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-------  214 (368)
                       +++..+...|..                 .+......++.++.|+..+.+.... -.....+++++.++...       
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             677777765531                 1345667889999999876554322 12223456666554322       


Q ss_pred             -cchhHHHHHHHHHHHhhcCCC---------CC---ChhhhhchHHHHHHhhc----C-C---CHHHHHHHHHHHHHhhc
Q 017651          215 -AKLSMLRNATWTLSNFCRGKP---------QP---PFDQVRPALPALAQLVH----S-N---DEEVLTDACWALSYLSD  273 (368)
Q Consensus       215 -~~~~~~~~a~~~L~~l~~~~~---------~~---~~~~~~~~~~~L~~lL~----~-~---d~~v~~~a~~~l~~l~~  273 (368)
                       +......++..+|.|+--...         ..   ........+..|+.+|.    . .   -.+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence             244567778888887721110         00   00111234555555553    1 1   13678888899999988


Q ss_pred             CChHHHHHHHH----------------cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651          274 GTNDKIQAVIE----------------AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       274 ~~~~~~~~~~~----------------~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      .+....+.+..                ..+-..|++++.++.+.++..+...+-.+|..+.
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            76544443322                2456779999988889999999999988886543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.84  E-value=0.0026  Score=53.52  Aligned_cols=203  Identities=21%  Similarity=0.291  Sum_probs=134.2

Q ss_pred             cCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---
Q 017651          116 SGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---  191 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~---  191 (368)
                      ...+|.|+..|...+ .|-+|.+|+.+|+.+..  +         +..+.+-++.+++...+++.|..++..+--.+   
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            456888888887543 37899999999998873  2         45677778888888899998888887663111   


Q ss_pred             ------------hhhHHHHHhcCChHHHHHHhccccchhH-HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH
Q 017651          192 ------------PRCRDLVLSQGALIPLLAQLNERAKLSM-LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE  258 (368)
Q Consensus       192 ------------~~~~~~i~~~~~i~~l~~~l~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~  258 (368)
                                  |...   ...+-+..+-..|.....+.+ ++.+.+.|.|+-..          ..+..|.+-+..++.
T Consensus       135 ~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Sa  201 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSA  201 (289)
T ss_pred             cccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchH
Confidence                        1110   011123334333422222222 33455656555432          467778888888888


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC--CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651          259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  336 (368)
Q Consensus       259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~l  336 (368)
                      -++..++.+++.|-+.           -.++.|.+.|.  ...+.+|..|+.+||.++..           ..++.|...
T Consensus       202 lfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~  259 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEY  259 (289)
T ss_pred             HHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHH
Confidence            8999999999888643           23666777763  35689999999999999852           135567777


Q ss_pred             hCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          337 LTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       337 l~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      +.++ .+-|++.+..+|.-+-..|...++
T Consensus       260 ~~D~-~~vv~esc~valdm~eyens~~~e  287 (289)
T KOG0567|consen  260 LGDE-ERVVRESCEVALDMLEYENSKEFE  287 (289)
T ss_pred             cCCc-HHHHHHHHHHHHHHHHHhcccccc
Confidence            7777 788888888888766655544433

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.84  E-value=0.00012  Score=52.87  Aligned_cols=64  Identities=19%  Similarity=0.309  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          302 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       302 v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      .+...+++|+|++..++...+.+.+.|+++.++....- +.+|.+|+-|.|+|.|++.|+++.-+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~   66 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE   66 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46778999999999999999999999999999986643 33899999999999999999887644

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.78  E-value=0.0064  Score=59.55  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +..+.+.++++++.+|-.|++.+..+=    .   ..+ -..+++++.+++.+++ +.||..|+.|+.++-.-+   ...
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~----~---~el-~~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld---~~l  161 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLR----V---KEL-LGNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLD---KDL  161 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcC----h---HHH-HHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcC---Hhh
Confidence            444555555555555555555555331    0   011 1224666667777766 677777777777766532   344


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD  190 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~  190 (368)
                      +.+.|.+..+..++.++++.+...|+.+|..+-..
T Consensus       162 ~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         162 YHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            55556666677777777777777777777766433

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.77  E-value=0.022  Score=51.08  Aligned_cols=242  Identities=12%  Similarity=0.123  Sum_probs=161.4

Q ss_pred             HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH-----HHhhC--CChHHHHHhhCCCCHHHHHHHHHH
Q 017651          111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK-----VVIDH--GAVPIFVKLLASPSDDVREQAVWA  183 (368)
Q Consensus       111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~-----~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~  183 (368)
                      .++...|++..|+..|..-+ -+.+..++.+.+++.......+.     .+...  .++..|+.--.  ++++.-.+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence            34667789999999999888 79999999999999875544432     23322  23444444444  45666677777


Q ss_pred             HHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh----hhchHHHHHHhhcCCCHH
Q 017651          184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ----VRPALPALAQLVHSNDEE  259 (368)
Q Consensus       184 L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~lL~~~d~~  259 (368)
                      |...+.+. .+...++....+..+.+.+ ..++-++...|..++..+....+......    ...++.....+|.+++--
T Consensus       147 lRec~k~e-~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIKHE-SLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTTSH-HHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHhhH-HHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            77777774 4566777777888888888 77888899999999988665432221111    245677888899999999


Q ss_pred             HHHHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh---HHHHHHHHc--CChH
Q 017651          260 VLTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD---FQTQCIITY--GALP  331 (368)
Q Consensus       260 v~~~a~~~l~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~~--g~l~  331 (368)
                      .+..++..|+.+.......   ...+-+..-+..++.+|++++..++..|..+.--+++.+.   ...+.+...  .++.
T Consensus       225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~  304 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR  304 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred             eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence            9999999999998654322   2334445678899999999999999999999998887543   333323322  4566


Q ss_pred             HHHHhhCCC-CCccHHHHHHHHHHHHh
Q 017651          332 YLLGLLTHS-HKKSIKKEACWTISNIT  357 (368)
Q Consensus       332 ~l~~ll~~~-~~~~v~~~a~~~l~nl~  357 (368)
                      .+.++..+. ++.....|=.+.+.-|.
T Consensus       305 fl~~f~~~~~~D~qf~~EK~~li~~i~  331 (335)
T PF08569_consen  305 FLKDFHTDRTDDEQFEDEKAYLIKQIE  331 (335)
T ss_dssp             HHHTTTTT--S-CHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCccccHHHHHHHHHHHHH
Confidence            666665554 46666666666665543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.00073  Score=63.67  Aligned_cols=229  Identities=18%  Similarity=0.107  Sum_probs=153.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCC----CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIER----SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~----~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      +...++.+..++.+++..|++.+.-+.....    ....+.=....++..+++.+++.+ ..+|.+|+.+|+.+-.-+++
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~s-l~VRV~AaK~lG~~~~vSee  314 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRS-LSVRVEAAKALGEFEQVSEE  314 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCc-eeeeehHHHHhchHHHhHHH
Confidence            6677778888888888888666553322110    011111112335667777777776 67888888777765433222


Q ss_pred             ch--------------------------------------------------HHHhhCCChHHHHHhhCCCCHHHHHHHH
Q 017651          152 NT--------------------------------------------------KVVIDHGAVPIFVKLLASPSDDVREQAV  181 (368)
Q Consensus       152 ~~--------------------------------------------------~~~~~~g~i~~L~~lL~~~~~~v~~~a~  181 (368)
                      ..                                                  ..++..|+--.++.-|.++-.+|+..|.
T Consensus       315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV  394 (823)
T KOG2259|consen  315 IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV  394 (823)
T ss_pred             HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence            11                                                  2245556667777777777889999999


Q ss_pred             HHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHH
Q 017651          182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL  261 (368)
Q Consensus       182 ~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~  261 (368)
                      ..++.|+..+|.+...     .+.-|++++ ++....++-.+..+|..++..     ...-+..++.+...|.+.+++++
T Consensus       395 ~Sl~~La~ssP~FA~~-----aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvR  463 (823)
T KOG2259|consen  395 ASLCSLATSSPGFAVR-----ALDFLVDMF-NDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLEDRSVDVR  463 (823)
T ss_pred             HHHHHHHcCCCCcHHH-----HHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHH
Confidence            9999999999876443     577889999 888889999999999999866     22335678888999988899999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH
Q 017651          262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (368)
Q Consensus       262 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  322 (368)
                      ...-..|.+.=-.+.+.+...     +..++..|. .-|.-+...+.|++.+.........
T Consensus       464 e~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~~lv~  518 (823)
T KOG2259|consen  464 EALRELLKNARVSDLECIDMC-----VAHLLKNLG-KYPQDRDEILRCMGRIGQNHRRLVL  518 (823)
T ss_pred             HHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhh-hCCCCcHHHHHHHHHHhccChhhHH
Confidence            888777766544433443322     233333332 2345577888899999887764444

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.68  E-value=0.00064  Score=60.83  Aligned_cols=211  Identities=13%  Similarity=0.097  Sum_probs=146.9

Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-----hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      .+...+.+..|+..|..-+-+.+..+..+.+++......     ..+.+..+ .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            344557888999999888889999999999999865422     23444443 133444445455577777777777777


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCCCCcchHHHH
Q 017651          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPA  306 (368)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a  306 (368)
                      .++...-.........+-.+.+..+.++-++..+|..++.-+..........++..   .++.....+|.+++.-.+..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77664323333335566667788888999999999999999877666666666554   456778889999999999999


Q ss_pred             HHHHHHhhcCCh--H-HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhhc
Q 017651          307 LRTVGNIVTGDD--F-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQVM  367 (368)
Q Consensus       307 ~~~l~nl~~~~~--~-~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~v  367 (368)
                      +..||.+.....  . -..++-+..-+..++.+|.+. +..++-+|-.++--+.+  ..+..|..|
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~i  294 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDI  294 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHH
Confidence            999999986443  1 123344446789999999999 99999999999988887  455555544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.66  E-value=0.02  Score=56.18  Aligned_cols=138  Identities=19%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  198 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i  198 (368)
                      .|-+++.+.+.+ .+++.-.-.-|.+++...++  ..+.   +++.+.+=+.++++.+|..|+++++.|=..  +.    
T Consensus        57 f~dViK~~~trd-~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~~--el----  124 (757)
T COG5096          57 FPDVIKNVATRD-VELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRVK--EL----  124 (757)
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcChH--HH----
Confidence            444455555333 56665555555555554441  1111   244455555556666666666666555211  11    


Q ss_pred             HhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      .. .+++++.+++ .+++..+++.|+.|+..+-+.++...  ...|....+..++.+.||.|...|+.++..+.
T Consensus       125 ~~-~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~l~--~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         125 LG-NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKDLY--HELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             HH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHhhh--hcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            11 1345555555 55555666666666666554432111  11234444555555556666666665555554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.0073  Score=60.90  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=153.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 017651          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLV  198 (368)
Q Consensus       122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i  198 (368)
                      +.....+.+++.+|..+..+|..++.. +.........  .+...|.+-+++.....+...+.+|..|....+ +..+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344444443489999999999999985 3322222211  234455555555666777778888887765444 332333


Q ss_pred             HhcCChHHHHHHhccccchhHHHHHHHHHHHhh--cCC----CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC--RGK----PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       199 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      ..  .|+.++-.+ ++.+...++.+..+|..++  ...    ..+....+..+++.|...+-.+...+....+.++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 6678888888888888888  221    22224455667777777765555555555466666666


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHH
Q 017651          273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~  352 (368)
                      ....+....-.-.+++..+..+|.+.+++++..|+..+..++..-++.+-.-....+++.+..++++. .-.+|+.+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            43322222222235677788888999999999999999999998875544333445788888888777 78888888888


Q ss_pred             HHHHhc-CCHHHhh
Q 017651          353 ISNITA-GNRDQIQ  365 (368)
Q Consensus       353 l~nl~~-~~~~~i~  365 (368)
                      +--++. -..+.++
T Consensus       893 lekLirkfg~~eLe  906 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELE  906 (1176)
T ss_pred             HHHHHHHhCHHHHH
Confidence            877775 3444444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.57  E-value=0.0077  Score=53.66  Aligned_cols=193  Identities=20%  Similarity=0.254  Sum_probs=126.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH---hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC--C
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI---QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--T  149 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i---~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~--~  149 (368)
                      .+...+..+.......|..|+..+.+++...   ....++   ...++..+.+.++.+. .+-+..|+.+++-++-.  .
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~---~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR---YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCC
Confidence            3777788888888999999999999998753   222333   3446788888888887 56677788877777653  3


Q ss_pred             CcchHHHhhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHHHH--hcc---------
Q 017651          150 SENTKVVIDHGAVPIFVKLLASPS--DDVREQAVWALGNVA---GDSPRCRDLVLSQGALIPLLAQ--LNE---------  213 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nla---~~~~~~~~~i~~~~~i~~l~~~--l~~---------  213 (368)
                      ......+.+ ...|.|...+.+..  ..++..|+.+|+-++   ...+......++  .+..+...  ...         
T Consensus       120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence            344555554 57889999888643  466667777776654   333322121111  23322211  111         


Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          214 RAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       214 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      .++..+...|+.+.+-|...-+.... ......+|.|..+|.++|.+|+..|-.+|+-|...
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            12356777777666666655443222 33467899999999999999999999999887643

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0021  Score=61.47  Aligned_cols=212  Identities=19%  Similarity=0.204  Sum_probs=105.9

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--h
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--C  194 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~--~  194 (368)
                      |+...|.+.|++.+++.++.-++.-|+-..-++...       .+...+-..|..++.-.-+.|..++|-+.-.+..  .
T Consensus       413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~ea  485 (929)
T KOG2062|consen  413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEA  485 (929)
T ss_pred             cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHH
Confidence            356677788877766778888877776655543321       1234444455554444445555555544322211  0


Q ss_pred             HHHHH-------------------------hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH
Q 017651          195 RDLVL-------------------------SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL  249 (368)
Q Consensus       195 ~~~i~-------------------------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L  249 (368)
                      -+.+.                         ..+..++++.-+..+.|+-++.....++.---.+..      ..+.+..|
T Consensus       486 iedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------nnkair~l  559 (929)
T KOG2062|consen  486 IEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG------NNKAIRRL  559 (929)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------chhhHHHh
Confidence            00000                         111223333333344444444443333321111100      01233333


Q ss_pred             HHh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651          250 AQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY  327 (368)
Q Consensus       250 ~~l-L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  327 (368)
                      +.. .++.+.+|+..|.-+|+.++..+++.         ++..+.+| .+-++.+|.-+..+||-.|++.....      
T Consensus       560 Lh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------  624 (929)
T KOG2062|consen  560 LHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------  624 (929)
T ss_pred             hcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------
Confidence            333 23445667777777777776665554         55566666 34466777777777776666654221      


Q ss_pred             CChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          328 GALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       328 g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                       .+..|-.+.+++ ..-||+.|+-+++-|.-
T Consensus       625 -Ai~lLepl~~D~-~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  625 -AINLLEPLTSDP-VDFVRQGALIALAMIMI  653 (929)
T ss_pred             -HHHHHhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence             244444455555 55677777766666553

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.035  Score=53.20  Aligned_cols=258  Identities=14%  Similarity=0.138  Sum_probs=158.2

Q ss_pred             HHHhhcCCC--HHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           79 MVAGVWSDD--SSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        79 l~~~l~~~~--~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +-+.|-+++  .-++.+|+-+|.++.... +    .++ ..+....++++|.+.+ -.+...+...+.-++..+++....
T Consensus       151 I~KlLvS~~~~~~vkqkaALclL~L~r~s-p----Dl~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~yk~  224 (938)
T KOG1077|consen  151 IPKLLVSGSSMDYVKQKAALCLLRLFRKS-P----DLVNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPESYKT  224 (938)
T ss_pred             hHHHHhCCcchHHHHHHHHHHHHHHHhcC-c----cccChhhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHHHhh
Confidence            334555544  456777887887787653 2    122 2345778888888877 577777777777777765554332


Q ss_pred             HhhCCChHHHHHhhCC-------------CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhcccc-c----
Q 017651          156 VIDHGAVPIFVKLLAS-------------PSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERA-K----  216 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~-------------~~~~v~~~a~~~L~nla~-~~~~~~~~i~~~~~i~~l~~~l~~~~-~----  216 (368)
                      .+. -++..|..+...             +.+=++...+++|.+.-. +++..+..+.+  +++.++......+ .    
T Consensus       225 ~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq  301 (938)
T KOG1077|consen  225 CLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQ  301 (938)
T ss_pred             hHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchH
Confidence            211 012222222211             456667777777777732 23344555444  4556665553211 1    


Q ss_pred             -hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651          217 -LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (368)
Q Consensus       217 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL  295 (368)
                       ...+..+++-.-+|+..- ......+...+..|.++|.+..+.++.-++...+.|+...... +.+-.+  .+.++..|
T Consensus       302 ~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sL  377 (938)
T KOG1077|consen  302 HSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSL  377 (938)
T ss_pred             hhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHh
Confidence             223333444444555442 3333455678889999999999999999999999999774433 444444  67788888


Q ss_pred             C-CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          296 G-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       296 ~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      + ..+..+|..|+..|..+|-.+.  .+.+     +.-+++.|.+- ++.+|++.+.-++-++
T Consensus       378 kterDvSirrravDLLY~mcD~~N--ak~I-----V~elLqYL~tA-d~sireeivlKvAILa  432 (938)
T KOG1077|consen  378 KTERDVSIRRRAVDLLYAMCDVSN--AKQI-----VAELLQYLETA-DYSIREEIVLKVAILA  432 (938)
T ss_pred             ccccchHHHHHHHHHHHHHhchhh--HHHH-----HHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            7 7788999999999999986443  3323     33455666666 7788887766555554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.45  E-value=0.01  Score=58.18  Aligned_cols=234  Identities=16%  Similarity=0.117  Sum_probs=152.4

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG  202 (368)
Q Consensus       124 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~  202 (368)
                      ..+.....|.+-..+.|.+...++........+..  .+...+..+ .+..+.++..|+.+++..++..  .... ...+
T Consensus       456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~--vl~~-~~p~  530 (1005)
T KOG2274|consen  456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVK--VLLS-LQPM  530 (1005)
T ss_pred             hhcccccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCce--eccc-cchH
Confidence            33334444777778999998777643332222111  223333333 3445667777777777776322  1111 1223


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV--HSNDEEVLTDACWALSYLSDGTNDKIQ  280 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~  280 (368)
                      +++.|+.+. .....++......+|+..|..+|.........+.|.+..++  .++||.|...+-.++-.++... .+ .
T Consensus       531 ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~-~  607 (1005)
T KOG2274|consen  531 ILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-AN-Y  607 (1005)
T ss_pred             HHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hh-h
Confidence            556666666 56678888899999999999887777766677888766655  4678888777777776666421 11 1


Q ss_pred             HHHHcCChHHHHHhcCCCC----cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHH
Q 017651          281 AVIEAGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI  356 (368)
Q Consensus       281 ~~~~~~~~~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl  356 (368)
                      .-...-.+|.++..|..+.    .....-|+.+|.-+..+.+.-....+-.-++|.+.++.-|+++..+-..+.-||..+
T Consensus       608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~  687 (1005)
T KOG2274|consen  608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL  687 (1005)
T ss_pred             cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence            1222357899999997765    567778888888777665433333333467888888877776888889999999999


Q ss_pred             hcCCHHHhh
Q 017651          357 TAGNRDQIQ  365 (368)
Q Consensus       357 ~~~~~~~i~  365 (368)
                      ...+++|+-
T Consensus       688 Is~~~eq~~  696 (1005)
T KOG2274|consen  688 ISVTLEQLL  696 (1005)
T ss_pred             HhcCHHHHH
Confidence            998888864

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.022  Score=56.56  Aligned_cols=266  Identities=15%  Similarity=0.123  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHhhcCC-CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHH
Q 017651           88 SSLQLEATTQFRKLLSIE-RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (368)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  166 (368)
                      +....-|++.+..+.+.= +..+.....+.=+++.++..++++- --+|..|||.++.+++-+  ......-..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSID--FKDPNNLSEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHH
Confidence            334444555555544311 1333333444445677777888877 689999999999999632  232223234677777


Q ss_pred             HhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhccccchhHHHHHHH-HHHHhhcCCCCCChhhh
Q 017651          167 KLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATW-TLSNFCRGKPQPPFDQV  242 (368)
Q Consensus       167 ~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~  242 (368)
                      +.|. +.+-.|+-.|+.||..+..+.+.....+..+  +.++.|+.+. +..+.+....+.. .+..++..-..-.....
T Consensus       509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            7777 7778899999999999988776443333331  1233444444 2222233333332 22233322122222333


Q ss_pred             hchHHHHHHhhcC---CC---HHHHHHHHHHHHHhhc------CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          243 RPALPALAQLVHS---ND---EEVLTDACWALSYLSD------GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       243 ~~~~~~L~~lL~~---~d---~~v~~~a~~~l~~l~~------~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      ..+.....++++.   .+   .+=...|.++|.-+..      ..++.... ++..+++.+-..|.+.-.++-+.++.++
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5566667777764   11   2223334444443321      11222111 2223445555556666667777888887


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCH
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR  361 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~  361 (368)
                      .+++....+..-.++  |+++.+..++... ..+.-.+.+-+|.|+.. |++
T Consensus       667 ~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~  715 (1010)
T KOG1991|consen  667 SSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTP  715 (1010)
T ss_pred             hhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCch
Confidence            777665542222222  4667777777666 55666677777777664 444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.0049  Score=57.50  Aligned_cols=62  Identities=19%  Similarity=0.164  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      +.-..+.+++++.+..+....   ....++ ...+..|-.+|+++. ...|..|+++|..++...|+
T Consensus       275 ~k~emV~lE~Ar~v~~~~~~n---v~~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~  336 (898)
T COG5240         275 DKFEMVFLEAARAVCALSEEN---VGSQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQ  336 (898)
T ss_pred             CcchhhhHHHHHHHHHHHHhc---cCHHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCc
Confidence            344778888888888764322   111222 224778888899988 89999999999999986554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.39  E-value=0.00059  Score=49.25  Aligned_cols=92  Identities=17%  Similarity=0.166  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC
Q 017651          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS  299 (368)
Q Consensus       220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~  299 (368)
                      +..++++|...+..-+.........++|.++..+.++|+.|+..||.+|.+++....+..-. .=..++..|.+++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence            34567777777776655555566789999999999999999999999999999654332211 11367888899999999


Q ss_pred             cchHHHHHHHHHHh
Q 017651          300 PSVLIPALRTVGNI  313 (368)
Q Consensus       300 ~~v~~~a~~~l~nl  313 (368)
                      +.++..| ..+-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9888766 444443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.36  E-value=0.012  Score=46.12  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=97.5

Q ss_pred             hHHHHHhcCChHHHHHHhccccc-----hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHH
Q 017651          194 CRDLVLSQGALIPLLAQLNERAK-----LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACW  266 (368)
Q Consensus       194 ~~~~i~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~  266 (368)
                      +...++..||+..|++++..+..     .++...++.++..|-+..-.........++..++..+...  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            45678888999999999965553     4778888899999888742222233356777777777543  6889999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651          267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       267 ~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      .|-+++..++.....+-+.=-++.|+.+|..+++.++..|+..+-.+....+
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            9999999888877777766679999999999999999999999988865544

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.12  Score=52.13  Aligned_cols=194  Identities=18%  Similarity=0.154  Sum_probs=114.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..|+..+.+.|..++-.|+..+.++.+.-  | . .+ ...++...++++...+++..=..|+-+|+.++...--.-.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rl--p-~-~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRL--P-P-EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccC--c-H-HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            4677888888999999999999999998754  2 1 11 1234666666666544345566888999999874221111


Q ss_pred             HHhhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHHhccccchhHHHHHHH
Q 017651          155 VVIDHGAVPIFVKLLA--------SPSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATW  225 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nla~~~~~~-~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~  225 (368)
                      .+.  .++|.++.-|.        +....||+.|+++++.++.-.... -+.+... ....|+..---+.+...++.|..
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHH
Confidence            111  24566665543        234689999999999998543221 1111111 22222222114567788888888


Q ss_pred             HHHHhhcCCCCC----Chhh-----------------------hh----chHHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 017651          226 TLSNFCRGKPQP----PFDQ-----------------------VR----PALPALAQL-VHSNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       226 ~L~~l~~~~~~~----~~~~-----------------------~~----~~~~~L~~l-L~~~d~~v~~~a~~~l~~l~~  273 (368)
                      ++.......++.    ....                       ..    .++..++.- +.+-|..++..++++|..|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            877554332111    0000                       01    122222222 456789999999999999876


Q ss_pred             CCh
Q 017651          274 GTN  276 (368)
Q Consensus       274 ~~~  276 (368)
                      ..+
T Consensus       574 ~~p  576 (1133)
T KOG1943|consen  574 TEP  576 (1133)
T ss_pred             hhH
Confidence            543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.03  Score=54.35  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=136.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      -+|.+++.+.+.+.+++...-..|..++..  .+....+    -|..|-+-|.+++ +.+|--|+++|+.|--.      
T Consensus        72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALL----SIntfQk~L~DpN-~LiRasALRvlSsIRvp------  138 (968)
T KOG1060|consen   72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALL----SINTFQKALKDPN-QLIRASALRVLSSIRVP------  138 (968)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceee----eHHHHHhhhcCCc-HHHHHHHHHHHHhcchh------
Confidence            478888888888888888777777767543  2222211    3778888899998 88888887777765431      


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                       ++..-++-.+-+...+..+.||..|+.|+-.+-.-.++..+.+.     +.+-.+| .+.++.+.-.|+.++..+|-. 
T Consensus       139 -~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LL-aD~splVvgsAv~AF~evCPe-  210 (968)
T KOG1060|consen  139 -MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLL-ADRSPLVVGSAVMAFEEVCPE-  210 (968)
T ss_pred             -hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHh-cCCCCcchhHHHHHHHHhchh-
Confidence             11111123333455678899999999999999776666555433     3333444 788899999999999998844 


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---hHHHHH----------------------HHHc---C
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---NDKIQA----------------------VIEA---G  286 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~---~~~~~~----------------------~~~~---~  286 (368)
                         ....+.+-...+..+|-.-|+.-+..++..|...+...   +.....                      ..+.   -
T Consensus       211 ---rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l  287 (968)
T KOG1060|consen  211 ---RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL  287 (968)
T ss_pred             ---HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence               23444555566666665555444555555555444320   000000                      0000   0


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 017651          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGD  317 (368)
Q Consensus       287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (368)
                      ++...-.+|.+.++.+...++.+...++..+
T Consensus       288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~  318 (968)
T KOG1060|consen  288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN  318 (968)
T ss_pred             HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH
Confidence            2333445556677778888888888877644

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.32  E-value=0.016  Score=56.88  Aligned_cols=235  Identities=13%  Similarity=0.042  Sum_probs=151.7

Q ss_pred             CCCHHHHHHHHHHHHHhhcCC-CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651           85 SDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  163 (368)
                      +..|.+...|.+.+.++.+.. -++...    .-++...+..+..+..+.++..|+.+++..++  .+..... ..++++
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~----~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild  533 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL----QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILD  533 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH----HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHH
Confidence            445777778888888775531 011111    11244555555555546788888888887774  2222222 236788


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhh
Q 017651          164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQV  242 (368)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  242 (368)
                      .|.++....+.++.-..+.+|+..+.-+|+.... .+..+.|-++.++. ...|+.+...+--++-.+++.. .......
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~  611 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ  611 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence            8889998888999999999999999888876433 34446666666653 4557777777777777777643 1112223


Q ss_pred             hchHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCC
Q 017651          243 RPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGD  317 (368)
Q Consensus       243 ~~~~~~L~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~  317 (368)
                      ..++|.++..++.++    .....-++..|.-+..+.+.-....+-.-+++.+.+.. .+++......+..|+..+....
T Consensus       612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            568999999998765    55666667777666655332233333334677777764 6677888899999999998877


Q ss_pred             hHHHHHHHHcC
Q 017651          318 DFQTQCIITYG  328 (368)
Q Consensus       318 ~~~~~~~~~~g  328 (368)
                      .++...--..+
T Consensus       692 ~eq~~t~~~e~  702 (1005)
T KOG2274|consen  692 LEQLLTWHDEP  702 (1005)
T ss_pred             HHHHHhhccCC
Confidence            66554443333

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.047  Score=54.86  Aligned_cols=200  Identities=16%  Similarity=0.153  Sum_probs=127.1

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  239 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  239 (368)
                      +++..|+..+++.+..++..|+..++.++...|.  ...-+  ++...++++....+......+|-+|+.|+... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~Lad~--vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELADQ--VIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHHHH--HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            6788888899999999999999999999988762  22222  67777787755667888999999999999874 2222


Q ss_pred             hhhhchHHHHHHhhcCCC--------HHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          240 DQVRPALPALAQLVHSND--------EEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       240 ~~~~~~~~~L~~lL~~~d--------~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      .....++|.+.+-|+.++        ..|+..||.+++.++... +...+.+++.=.-..|...+-+++-.+|..|.-++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            344568888888775432        468888888888777543 23223332221112233334556667777776666


Q ss_pred             HHhhcC--C-----------------------hHHHHHHHH-cCChHHHHH-hhC----CCCCccHHHHHHHHHHHHhcC
Q 017651          311 GNIVTG--D-----------------------DFQTQCIIT-YGALPYLLG-LLT----HSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       311 ~nl~~~--~-----------------------~~~~~~~~~-~g~l~~l~~-ll~----~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      .-.+.-  +                       ......+-+ .|....+++ ++.    |= +..+|..++|+|.++.--
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence            544321  0                       001111111 133334433 322    22 778999999999998877


Q ss_pred             CHHHhh
Q 017651          360 NRDQIQ  365 (368)
Q Consensus       360 ~~~~i~  365 (368)
                      .|+...
T Consensus       575 ~pk~~a  580 (1133)
T KOG1943|consen  575 EPKYLA  580 (1133)
T ss_pred             hHHhhc
Confidence            776654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.31  E-value=0.0011  Score=47.88  Aligned_cols=90  Identities=20%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC
Q 017651          177 REQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS  255 (368)
Q Consensus       177 ~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~  255 (368)
                      +..++.+|..++..-+. ....+-.  ++++++..+ .+++..++..+|.+|.|++.............+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~--Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE--ILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH--HHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45667777777643322 2222222  789999988 8999999999999999999775444444557788899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 017651          256 NDEEVLTDACWALSY  270 (368)
Q Consensus       256 ~d~~v~~~a~~~l~~  270 (368)
                      .|+.|+..| +.|-+
T Consensus        80 ~d~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   80 PDENVRSAA-ELLDR   93 (97)
T ss_pred             CchhHHHHH-HHHHH
Confidence            999887766 44433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.28  E-value=0.035  Score=45.28  Aligned_cols=93  Identities=19%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 017651          173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL  252 (368)
Q Consensus       173 ~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l  252 (368)
                      ++.++..++-++|-|+...|..-+.     .++.+...| .++++.+++.++.+|+.|......+..   ..++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence            4688999999999999877654322     578888888 888999999999999999876422111   2344777788


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcC
Q 017651          253 VHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       253 L~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      +.++|++|+..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999866

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.001  Score=60.50  Aligned_cols=264  Identities=21%  Similarity=0.183  Sum_probs=138.4

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCC----CCCchHHHHhcCcHHHHH------H-hhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           84 WSDDSSLQLEATTQFRKLLSIE----RSPPIEEVIQSGVVPRFV------E-FLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~----~~~~~~~~i~~g~i~~Lv------~-lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      ...++..+..++..+.++..+-    .+++.+.-...|.+-...      . .-.+.. +..+..++-++.+|.....+.
T Consensus       305 ~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f~~  383 (728)
T KOG4535|consen  305 GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAFSN  383 (728)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhhcC
Confidence            3456777777777777764421    122222222222111111      0 011112 455666677777766532111


Q ss_pred             hHHHhhCC---ChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651          153 TKVVIDHG---AVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (368)
Q Consensus       153 ~~~~~~~g---~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  228 (368)
                      .    .+|   ..+.+.. .=.+.+.-++..|+.+++-+.-+..--.+...-..+...++..+ .+..-..+..++|+++
T Consensus       384 l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlg  458 (728)
T KOG4535|consen  384 L----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLG  458 (728)
T ss_pred             C----CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhh
Confidence            0    011   1111111 11223344566777777766655433333333344566677777 5656788899999999


Q ss_pred             HhhcCC----CCCChhhh---hchHHHHHHhh---cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC-------ChHHH
Q 017651          229 NFCRGK----PQPPFDQV---RPALPALAQLV---HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG-------VCPRL  291 (368)
Q Consensus       229 ~l~~~~----~~~~~~~~---~~~~~~L~~lL---~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~-------~~~~L  291 (368)
                      |++..-    |.+.....   ...+..++..-   .-+..+|...+..+|+|+...-    +.+.+.+       -+..+
T Consensus       459 nITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl----q~i~~~~~~e~~~~~~~~l  534 (728)
T KOG4535|consen  459 NITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL----QPIEKPTFAEIIEESIQAL  534 (728)
T ss_pred             hhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH----HHhhhccHHHHHHHHHHhc
Confidence            988642    33322221   11222222222   1234789999999999987431    2122211       11111


Q ss_pred             H-HhcCCCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          292 V-ELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       292 ~-~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      . .......-.++-+||++|||+..+..--.+ .-+-..+++.|..++.+..+..+|-.|+.+|+--.
T Consensus       535 ~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  535 ISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             ccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            1 112334568999999999999986542111 11222456777777765548899999998886544

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.01  Score=57.99  Aligned_cols=224  Identities=12%  Similarity=0.073  Sum_probs=149.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017651          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  201 (368)
Q Consensus       122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~  201 (368)
                      .+..+.++. +.++-.++.-|..+... .+....+...+++..++..|++.++.+--.|+..+..+|.-.|+        
T Consensus       732 ai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------  801 (982)
T KOG4653|consen  732 AISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------  801 (982)
T ss_pred             HHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------
Confidence            344444555 67899999999999883 45666677788999999999999998888899988888765443        


Q ss_pred             CChHHHHHHhccc---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017651          202 GALIPLLAQLNER---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK  278 (368)
Q Consensus       202 ~~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~  278 (368)
                      ..++.+.......   ...+.+-.+..++.++.+.-..-.......++........++|...+..++..++++|.-....
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            2566666533211   1234444555777777765433334444566677777888888889999999999998543322


Q ss_pred             H-HHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          279 I-QAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITY---GALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       279 ~-~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~---g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      . +.+.  .++..++.+. .++++-+|..|+..+..+..+.....-.+...   .....+........+..++..|+.++
T Consensus       882 vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  882 VSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            1 1222  2455555555 45678899999999999988776444444322   33444455554443677888888887


Q ss_pred             HHHh
Q 017651          354 SNIT  357 (368)
Q Consensus       354 ~nl~  357 (368)
                      -.+-
T Consensus       960 eei~  963 (982)
T KOG4653|consen  960 EEIQ  963 (982)
T ss_pred             HHHH
Confidence            6654

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.0057  Score=59.21  Aligned_cols=215  Identities=14%  Similarity=0.076  Sum_probs=144.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.+..|+.+...+.+...+.+..+|..-.+.....      ...+++.+...+......--..+++-+++|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            45677777777777777777777766211211111      122455666655544323346889999999999888888


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ..++..-+++.+-.++..+++.++..++.++.||.-..--+...+.+...=.++........+..+...++.++..+...
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv  657 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV  657 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence            88888777888888888899999999999999998776555555555433333443332445666666677776655544


Q ss_pred             CCCCC--hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651          234 KPQPP--FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (368)
Q Consensus       234 ~~~~~--~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  294 (368)
                      ..+..  ..........+..++.+.+.+++...+..+.++.....+....+.....++.+..+
T Consensus       658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            32211  33345677788899999999999999999999776666666666666665555544

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.016  Score=60.04  Aligned_cols=285  Identities=15%  Similarity=0.157  Sum_probs=157.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ||+|.+.-..++..+|..-. .+.+.+-.+....++. .-..++.-|+.-|.+.. ..+|+.+|.+|..+..+.+  ...
T Consensus      1000 IPrLyRY~yDP~~~Vq~aM~-sIW~~Li~D~k~~vd~-y~neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~--~~~ 1074 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMT-SIWNALITDSKKVVDE-YLNEILDELLVNLTSKE-WRVREASCLALADLLQGRP--FDQ 1074 (1702)
T ss_pred             hHHHhhhccCCcHHHHHHHH-HHHHHhccChHHHHHH-HHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCC--hHH
Confidence            66777666777877765444 4444443321222222 22345666777777777 7999999999999998633  222


Q ss_pred             HhhC--CChHHHHHhhCCCCHHHHH---HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----cccchhHHHHHHHH
Q 017651          156 VIDH--GAVPIFVKLLASPSDDVRE---QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWT  226 (368)
Q Consensus       156 ~~~~--g~i~~L~~lL~~~~~~v~~---~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----~~~~~~~~~~a~~~  226 (368)
                      +.+.  ..-..+++.+.+-.+.+|+   .++.+|+.++........-.....++..++..|-    -+.-.++++.++.+
T Consensus      1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence            2221  2334445555554455655   4567777776321111011111113444444442    24567899999999


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh------------cCCh--HHHHHHHH-------c
Q 017651          227 LSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS------------DGTN--DKIQAVIE-------A  285 (368)
Q Consensus       227 L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~------------~~~~--~~~~~~~~-------~  285 (368)
                      +..|+...+..-......++|.|......-.+.|..+...=+.+.-            .+.+  +.+...+.       .
T Consensus      1155 l~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLe 1234 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLE 1234 (1702)
T ss_pred             HHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHH
Confidence            9999987654333444567777777766555555433222112211            1111  11111111       1


Q ss_pred             CChHHHHHhcCCC-CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHH
Q 017651          286 GVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQ  363 (368)
Q Consensus       286 ~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~  363 (368)
                      ..+|.+.++++.. .-..+..+...+.-++........ -.....+..++..+++. ++.+++.-+.+.+.++. ..++|
T Consensus      1235 elip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dR-Nesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1235 ELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDR-NESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred             HHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccc-cHHHHHHHHHHHHHHHhcCChHH
Confidence            3566666666433 344556666666666542211111 01113566677777887 89999999999999997 67777


Q ss_pred             hhhc
Q 017651          364 IQVM  367 (368)
Q Consensus       364 i~~v  367 (368)
                      .+..
T Consensus      1313 ~qKL 1316 (1702)
T KOG0915|consen 1313 MQKL 1316 (1702)
T ss_pred             HHHH
Confidence            7654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.19  E-value=0.016  Score=47.29  Aligned_cols=92  Identities=17%  Similarity=0.200  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-ChHHHHHH
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-ALIPLLAQ  210 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-~i~~l~~~  210 (368)
                      |.+|..++-+++-++...+..    ++ ..++.+...|.++++.+|.+|+.+|..|...+.     +.-.| .+..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            789999999999998754432    22 458899999999999999999999999986542     12223 34778888


Q ss_pred             hccccchhHHHHHHHHHHHhhcCC
Q 017651          211 LNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      + .+++++++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            8 8899999999999999999773

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.18  E-value=0.015  Score=54.47  Aligned_cols=204  Identities=20%  Similarity=0.252  Sum_probs=121.5

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhh-cCCCCHHHH----HHHHHHHHHHhcCC
Q 017651           76 LPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQLQ----FEAAWALTNIASGT  149 (368)
Q Consensus        76 i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL-~~~~~~~v~----~~a~~~L~~l~~~~  149 (368)
                      +..++.... +.++..+..+++.+.-++..-....   . -.+++..+..-+ ...+ +..+    ...+|+..-+...+
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~-l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---D-LDEFLDSLLQSISSSED-SELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---h-HHHHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcC
Confidence            445555444 3456777777887777764421111   1 012233343333 1222 2333    33445555544422


Q ss_pred             CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--------HHHHHhcC----ChHHHHHHhccccch
Q 017651          150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--------RDLVLSQG----ALIPLLAQLNERAKL  217 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~--------~~~i~~~~----~i~~l~~~l~~~~~~  217 (368)
                      .....     ..+..|+.+|.+  +++...++.+++-|..+.+.+        -..+....    .+|.+++.. ...+.
T Consensus       266 ~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~  337 (415)
T PF12460_consen  266 HPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADD  337 (415)
T ss_pred             CchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH-hhcCh
Confidence            22211     245678888875  778889999999998884333        11222222    456666666 33344


Q ss_pred             hHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651          218 SMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  293 (368)
Q Consensus       218 ~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  293 (368)
                      +.+.....+|+.+..+-|.... .....++|.+++.|..+|.+++..++.++..+....++.+..-++ .+++.|++
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            4778888999999987664333 234779999999999999999999999999999887655443222 34454443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.034  Score=53.68  Aligned_cols=215  Identities=15%  Similarity=0.184  Sum_probs=133.9

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      .+..+..+|.+.+ +.++++|+..|.+++.. +.....     +...+++++-. ++-.++-..+.-|..+....   ..
T Consensus       244 ~i~~i~~lL~sts-saV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~---~~  313 (948)
T KOG1058|consen  244 YIRCIYNLLSSTS-SAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALH---EK  313 (948)
T ss_pred             HHHHHHHHHhcCC-chhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhh---HH
Confidence            4677778888776 78888888888877773 332221     23445554432 33444444455555554221   11


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-c------CCCHHHHHHHHHHHH
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-H------SNDEEVLTDACWALS  269 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-~------~~d~~v~~~a~~~l~  269 (368)
                       ++ .|.+-.+++.| ..+|.++++.++.....|......      ..++..|-+=+ .      .++.+.+.....++.
T Consensus       314 -il-~~l~mDvLrvL-ss~dldvr~Ktldi~ldLvssrNv------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih  384 (948)
T KOG1058|consen  314 -IL-QGLIMDVLRVL-SSPDLDVRSKTLDIALDLVSSRNV------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH  384 (948)
T ss_pred             -HH-HHHHHHHHHHc-CcccccHHHHHHHHHHhhhhhccH------HHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence             11 13455677777 888999999999888888866321      11222222111 1      123567888899999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHH
Q 017651          270 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA  349 (368)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a  349 (368)
                      .++..-++...     .+++.++.++.+.++......+..+.......+..+..+++     .|+.-+..-....+-+.|
T Consensus       385 ~cav~Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~rga  454 (948)
T KOG1058|consen  385 ACAVKFPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKICRGA  454 (948)
T ss_pred             HHhhcChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccchhH
Confidence            99877665543     46889999999888877777777777766666654443333     333333222245789999


Q ss_pred             HHHHHHHhcCCH
Q 017651          350 CWTISNITAGNR  361 (368)
Q Consensus       350 ~~~l~nl~~~~~  361 (368)
                      .|.++..|.+..
T Consensus       455 lwi~GeYce~~~  466 (948)
T KOG1058|consen  455 LWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHhhhH
Confidence            999999998765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.13  E-value=0.043  Score=54.43  Aligned_cols=173  Identities=17%  Similarity=0.151  Sum_probs=118.3

Q ss_pred             HHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhcCCCH-H
Q 017651          183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDE-E  259 (368)
Q Consensus       183 ~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~L~~lL~~~d~-~  259 (368)
                      +|.++..+.+.....+++.|++..+...+......++...+...+.|++...+..........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45678888888889999999999999999777889999999999999998763333222222222  33334444444 7


Q ss_pred             HHHHHHHHHHHhhcCChHH---------HHHH--------------HHcCChHH-HHHhc-CCCCcchHHHHHHHHHHhh
Q 017651          260 VLTDACWALSYLSDGTNDK---------IQAV--------------IEAGVCPR-LVELL-GHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       260 v~~~a~~~l~~l~~~~~~~---------~~~~--------------~~~~~~~~-L~~lL-~~~~~~v~~~a~~~l~nl~  314 (368)
                      .-..++..++.+....++.         -+.+              .....+.. +..++ .+..+..+..|+|++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            8888888888887642211         0111              11112222 44444 3456788999999999999


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      ...++....+.+.|+++.+..+-.......++.++.-.+-+
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  694 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES  694 (699)
T ss_pred             HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence            99888888899999999888776655344555555554443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.13  E-value=0.047  Score=49.93  Aligned_cols=171  Identities=19%  Similarity=0.107  Sum_probs=119.7

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cchhHHHHHHHHHHHhhcCCCCCChh
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFD  240 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~  240 (368)
                      .+.+..++-+++.+++..+..++..+..+... -..+.+.+.---++.-|..+ .+..=+..|+..+..+...+.. ...
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-ccc
Confidence            33344344455599999999999999988754 45666665433444445333 3455567888888888876422 222


Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                      .-.+++..++.+..+.+...+..++.+++.++-.+++   .+..+|++..+.+.+.++...+....+.++-.+..... .
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-T  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-h
Confidence            3467888999999999999999999999999987764   46788999999999977665688888888888886544 4


Q ss_pred             HHHHHHcCChHHHHHhhC
Q 017651          321 TQCIITYGALPYLLGLLT  338 (368)
Q Consensus       321 ~~~~~~~g~l~~l~~ll~  338 (368)
                      ++++...--++.++.-+.
T Consensus       181 R~yl~~~~dL~~l~apft  198 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFT  198 (371)
T ss_pred             hhhhcCCccHHHHHHhhh
Confidence            444444333555554443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=97.12  E-value=0.047  Score=46.71  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 017651          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL  211 (368)
Q Consensus       133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l  211 (368)
                      .....|+.+|.-++--.+..+..+.....+..++++|. ...+.++..++.+|..+..++|.+...+.+.+++..+..++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            34566788999988878999999999999999999995 46789999999999999999999999999999999999999


Q ss_pred             cccc-chhHHHHHHHHHHHhhcCC
Q 017651          212 NERA-KLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       212 ~~~~-~~~~~~~a~~~L~~l~~~~  234 (368)
                      +... +.+++-.++..|.-+....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            6443 7788778887777666543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.12  E-value=0.00045  Score=51.22  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=61.7

Q ss_pred             ChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          287 VCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       287 ~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      ++..|+.+| .+.++.+..-||.-||.++...|.....+-+.|+-..++.++.++ +++||.+|..++.-+...
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            578899999 555788889999999999999998888777889999999999999 999999999999887653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.11  E-value=0.0067  Score=58.75  Aligned_cols=236  Identities=15%  Similarity=0.083  Sum_probs=158.1

Q ss_pred             HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHH-HHhcCCCcchHHHhhCCChHHHHHhhCCCCHHH-HHHHHHHHHHhh
Q 017651          111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALT-NIASGTSENTKVVIDHGAVPIFVKLLASPSDDV-REQAVWALGNVA  188 (368)
Q Consensus       111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v-~~~a~~~L~nla  188 (368)
                      ...|..|+...|+.+...+. +..+.....+|. .+..  +.++.    ...++.+...+......+ ...++.++.|++
T Consensus       498 ~~~Ik~~~~~aLlrl~~~q~-e~akl~~~~aL~~~i~f--~~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  498 AKKIKPGGYEALLRLGQQQF-EEAKLKWYHALAGKIDF--PGERS----YEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             CccccccHHHHHHHHHHHhc-hHHHHHHHHHHhhhcCC--CCCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            34567788888888887776 677777777777 2322  11111    124555555554332211 236889999999


Q ss_pred             CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC--CChhhhhchHHHHHHhhcCCCHHHHHHHHH
Q 017651          189 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALPALAQLVHSNDEEVLTDACW  266 (368)
Q Consensus       189 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~  266 (368)
                      +.+...|..+...-.++.+-.++ ..+++-.++.++..+.||..++--  ..+......++.....+...++.....++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccc
Confidence            98888888888777777777776 777899999999999999877411  111112345566666666667777788888


Q ss_pred             HHHHhhcCChHHHHH-HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccH
Q 017651          267 ALSYLSDGTNDKIQA-VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  345 (368)
Q Consensus       267 ~l~~l~~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v  345 (368)
                      ++..++......... .--..+...++..+.+.++.++...+.++.|+.....+....++....++.+..+-.-. ....
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~-~a~~  728 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN-RAPK  728 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh-hhhh
Confidence            887676655555442 22336788889999999999999999999997776666666676666666655544333 4445


Q ss_pred             HHHHHHHHHH
Q 017651          346 KKEACWTISN  355 (368)
Q Consensus       346 ~~~a~~~l~n  355 (368)
                      ++.+.-+|+.
T Consensus       729 ~~~~~~~l~~  738 (748)
T KOG4151|consen  729 REDAAPCLSA  738 (748)
T ss_pred             hhhhhhHHHH
Confidence            5555555544

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.11  E-value=0.0061  Score=59.82  Aligned_cols=191  Identities=19%  Similarity=0.141  Sum_probs=129.6

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-------------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  227 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~-------------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  227 (368)
                      +...|+.+|++  +++-..+..++.-+..|++..             ++.+. ...+|.+++.+ ...+...+..-..+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKF-ETAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHh-ccCCccchhHHHHHH
Confidence            34556666664  334455666666665554432             22222 23677888887 455667778888999


Q ss_pred             HHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC---cchH
Q 017651          228 SNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVL  303 (368)
Q Consensus       228 ~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~  303 (368)
                      +++..+-|.... .....++|.|++.|.-+|..++..+..++.-+....+.....-+ ..+++.++.+-++++   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence            998876555332 23467889999999999999999999999888755433322222 235677777765555   5789


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       304 ~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      ..|+.+++.+..--|...-......++..+...|.++ +.-+|++|..+=.+-.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence            9999999999984443333334446788899999999 8999999998766543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.011  Score=56.82  Aligned_cols=245  Identities=15%  Similarity=0.176  Sum_probs=138.0

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651           80 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH  159 (368)
Q Consensus        80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  159 (368)
                      -+.|+++++.++-..++.+.++=.   .+     +-..++|.+...|.+.+ +-+|..|..++..|-...    +.++. 
T Consensus       105 RkDLQHPNEyiRG~TLRFLckLkE---~E-----Llepl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~p-  170 (948)
T KOG1058|consen  105 RKDLQHPNEYIRGSTLRFLCKLKE---PE-----LLEPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLIP-  170 (948)
T ss_pred             hhhccCchHhhcchhhhhhhhcCc---HH-----HhhhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhcC-
Confidence            344556666666666665555510   11     11345788888899988 899999999999887731    11111 


Q ss_pred             CChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--cccchhHHHHHHHHHHHhhcCCCC
Q 017651          160 GAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGKPQ  236 (368)
Q Consensus       160 g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~  236 (368)
                      .+-..+-.+| .+.++..++.|.-.|...-.   +.        ++..+...+.  .+-++.++-.+...+...|...|.
T Consensus       171 DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~---Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~  239 (948)
T KOG1058|consen  171 DAPELIESFLLTEQDPSCKRNAFLMLFTTDP---ER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA  239 (948)
T ss_pred             ChHHHHHHHHHhccCchhHHHHHHHHHhcCH---HH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH
Confidence            2223333333 45677778777766655422   11        2333333332  233566666667777777764332


Q ss_pred             CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhc
Q 017651          237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .    ....+..+..+|++.++.++..|+.+|..++..+... ...     ...++.++ +.++..+..-.+.-|..+..
T Consensus       240 ~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al-k~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~  309 (948)
T KOG1058|consen  240 E----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL-KAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKA  309 (948)
T ss_pred             H----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH-HHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence            2    1246677778888888888888888888877654322 111     22334443 22333444444444444443


Q ss_pred             CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhh
Q 017651          316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ  365 (368)
Q Consensus       316 ~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~  365 (368)
                      ....    +++ |.+--++.+|+++ +-++|+.+.-..-.++. .+-+++-
T Consensus       310 ~~~~----il~-~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv  354 (948)
T KOG1058|consen  310 LHEK----ILQ-GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIV  354 (948)
T ss_pred             hhHH----HHH-HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHH
Confidence            3222    222 4555567777777 77777777776666664 5655554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.037  Score=56.08  Aligned_cols=221  Identities=13%  Similarity=0.102  Sum_probs=140.8

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhc---CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC-cchHHHhhC
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS---GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTKVVIDH  159 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~---g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~  159 (368)
                      ++.+..+|.++.+.|..+...   +........   .+...|.+-+++.. ...+...+.+|..|....+ +....+.. 
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k-  738 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPK-  738 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHH-
Confidence            345788999999999998764   333333322   23445555555555 5788888899988887544 44444433 


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhC--------CChhhHHHHHhcCChHHHHHHhccc--cchhHHHHH-HHHHH
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAG--------DSPRCRDLVLSQGALIPLLAQLNER--AKLSMLRNA-TWTLS  228 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~--------~~~~~~~~i~~~~~i~~l~~~l~~~--~~~~~~~~a-~~~L~  228 (368)
                       .|+-++-.++..+...++.+..+|.+|+.        +.|  ..     ..+..++..+...  .+....... +-++.
T Consensus       739 -~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~-----~~lnefl~~Isagl~gd~~~~~as~Ivai~  810 (1176)
T KOG1248|consen  739 -LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--AS-----AILNEFLSIISAGLVGDSTRVVASDIVAIT  810 (1176)
T ss_pred             -HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hH-----HHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence             34444444487888888888888888772        111  01     1355555555322  122111111 44444


Q ss_pred             HhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHH
Q 017651          229 NFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL  307 (368)
Q Consensus       229 ~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~  307 (368)
                      .+.... ..........++..+.-+|.+..++++..|+..+.-++..-++..-......+++.+..+++...-.++..+-
T Consensus       811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr  890 (1176)
T KOG1248|consen  811 HILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVR  890 (1176)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            444432 3334445567788888888999999999999999999877655433333345788888888877888888888


Q ss_pred             HHHHHhhcCC
Q 017651          308 RTVGNIVTGD  317 (368)
Q Consensus       308 ~~l~nl~~~~  317 (368)
                      ..+-.++...
T Consensus       891 ~LlekLirkf  900 (1176)
T KOG1248|consen  891 LLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHh
Confidence            8888877533

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.06  E-value=0.077  Score=47.33  Aligned_cols=191  Identities=17%  Similarity=0.169  Sum_probs=118.5

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhccccchhHHHHHHHHHHHhhcC--CCCC
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRG--KPQP  237 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~--~~~~  237 (368)
                      +...+..+.+.....|+.++..+.++...... .+.+...  ..+..+.+.+++... +-+..++.++.-+|-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence            33445555566788999999999988755422 2222221  146666777744443 4455666767666654  2344


Q ss_pred             ChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHhh---cCChHHHHHHHHcCChHHH--HHhcC----------CCCc
Q 017651          238 PFDQVRPALPALAQLVHSND--EEVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRL--VELLG----------HPSP  300 (368)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~d--~~v~~~a~~~l~~l~---~~~~~~~~~~~~~~~~~~L--~~lL~----------~~~~  300 (368)
                      ....+..+.|.|...+....  +.++..++.+|+-++   ....+.+...++  .+..+  ..+++          .+++
T Consensus       123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            55666788899999887653  556666666666554   333333332222  23311  11221          1235


Q ss_pred             chHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          301 SVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .+...|+.+.+-|.+.-+. .....++ ..++.|..+|.++ +..||..|.-+|+-|..
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            6899999999988876654 2233333 5689999999999 99999999999887754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.021  Score=59.11  Aligned_cols=220  Identities=16%  Similarity=0.180  Sum_probs=137.6

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      ..|-.|+++-+++-...-+.-|+.-++.|+....+.-+.... -.||.|.++=.+|+..|+.....+..-|..|+...-+
T Consensus       956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen  956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred             HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence            346677777776654667888888899888744333333332 4789999999999999999888888888888665544


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-hhhchHHHHHHhhcCCCHHHH---HHHHHHHHHhh
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSNDEEVL---TDACWALSYLS  272 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~L~~lL~~~d~~v~---~~a~~~l~~l~  272 (368)
                      ...+. +++.|+.-+ .+....+++.+|.+|..|.++.|...+. .+..+...+.+...+-.+.|+   ..++.+|+.++
T Consensus      1035 ~y~ne-Il~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLNE-ILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHHHH-HHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44332 556666666 6667899999999999999986543332 223344444444433334454   44666777665


Q ss_pred             cCChHHHHHHHHcCChHHHHHhc-----CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651          273 DGTNDKIQAVIEAGVCPRLVELL-----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~L~~lL-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                      -..-+.....-...++..++++|     -+.-+++|..++.++..++...+......+- .++|.|+.....-
T Consensus      1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP-KLIPLLLNAYSEL 1184 (1702)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh-HHHHHHHHHcccc
Confidence            22111111111112344444443     2445789999999999999877654432222 4566666666554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.98  E-value=0.031  Score=55.35  Aligned_cols=148  Identities=15%  Similarity=0.088  Sum_probs=97.1

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 017651          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  283 (368)
Q Consensus       204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  283 (368)
                      ++.+-.+. .+.+..+....+..+..+.--.+  ....+....|.+...++..++.|+.+..+.+..+-...+..--..+
T Consensus       400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~  476 (759)
T KOG0211|consen  400 LPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV  476 (759)
T ss_pred             hHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence            34443443 55566666666665555543322  2233456788888899999999999999988766544443333455


Q ss_pred             HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ....++.+..+-....+.++...++.+-.++....   ..+++...-+.+...+.+. ...+++.|+..+.-++.
T Consensus       477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~  547 (759)
T KOG0211|consen  477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVE  547 (759)
T ss_pred             hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHH
Confidence            55677777777766678888888888888876433   2344444455555556665 67788888888887775

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.11  Score=51.90  Aligned_cols=238  Identities=17%  Similarity=0.140  Sum_probs=139.3

Q ss_pred             CcHHHHHHhhcC------C-CCHHHHHHHHHHHHHHhcC--CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017651          117 GVVPRFVEFLMR------E-DYPQLQFEAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV  187 (368)
Q Consensus       117 g~i~~Lv~lL~~------~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  187 (368)
                      |+++.+++.|.+      + +++.-+.-|+.+++++++-  ...--+..++.-.++.++-.++++.-.++..|||.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            457777777762      2 2366778888999998852  122223444555677777788888899999999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhcCCCHHHHHHH
Q 017651          188 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHSNDEEVLTDA  264 (368)
Q Consensus       188 a~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~lL~~~d~~v~~~a  264 (368)
                      +...-  .+...-..++....+.|..+.+..++..|+-+|..+..+.+....   ..+.+++..|+.+.+.-+.+..+.+
T Consensus       490 ~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             HhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            94332  222222236777778885688889999999999999987643322   2334555556666655555555555


Q ss_pred             HHHH-HHhhcCChHHHHHHHHcCChHHHHHhcCC---CCc---chHHHHHHHHHHhh---c---CChHHHHHHHHcCChH
Q 017651          265 CWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH---PSP---SVLIPALRTVGNIV---T---GDDFQTQCIITYGALP  331 (368)
Q Consensus       265 ~~~l-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~---~v~~~a~~~l~nl~---~---~~~~~~~~~~~~g~l~  331 (368)
                      +..+ +..+..-....-.+. ..+...+.+++..   .++   +-...|.++|..+.   .   ..++..+ -++.-+++
T Consensus       568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~  645 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP  645 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence            5433 233221111111111 1234445555542   122   22333444443332   2   1222222 22335677


Q ss_pred             HHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          332 YLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       332 ~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      .+-.+|++. -.++-++++-.+.+++.-
T Consensus       646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~  672 (1010)
T KOG1991|consen  646 VIGFILKND-ITDFYEELLEIVSSLTFL  672 (1010)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHhhhhhh
Confidence            777777777 778888888888887763

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.04  Score=53.47  Aligned_cols=260  Identities=16%  Similarity=0.158  Sum_probs=138.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH-
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK-  154 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~-  154 (368)
                      ++.+=..+.+....+.++|++++..+-..    ....+..  .+..|-.+++++. +.+|..|.++|..+|...+.... 
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~----~~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNT----NSRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhcccc----CHhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCccccc
Confidence            34445566678888999999998877432    2222222  5777888888888 89999999999999985443221 


Q ss_pred             -------HHhhCC---ChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChh-----hHHHH-----HhcCChHHHHHH
Q 017651          155 -------VVIDHG---AVPIFVKLLASPS----DDVREQAVWALGNVAGDSPR-----CRDLV-----LSQGALIPLLAQ  210 (368)
Q Consensus       155 -------~~~~~g---~i~~L~~lL~~~~----~~v~~~a~~~L~nla~~~~~-----~~~~i-----~~~~~i~~l~~~  210 (368)
                             .+-+.+   +...+..+|+...    ..+..+.....++|+.+-..     .+...     ...+.+.-|.++
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~  399 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM  399 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                   111111   1233333444322    33444444444555433211     00000     011223333344


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651          211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (368)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  290 (368)
                      |.+...-+..+.+.-++..+....|....    .++..|..++.+.  +....+...|+-|-...+..   ......+..
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a---~~Pskyir~  470 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDSKE----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA---PNPSKYIRF  470 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcchhh----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC---CCcchhhHH
Confidence            43444445555555555555543322111    2333444443322  22233333333333221100   001122333


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      +...+--.+..+|..|+.++.++..+++....     .+.-.+.+++.+. +.++|..|.+.+.++-
T Consensus       471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~-DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDS-DDEVRDRATFYLKNLE  531 (865)
T ss_pred             HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCc-hHHHHHHHHHHHHHhh
Confidence            44443334667899999999999866553222     4555677888888 8999999999999987

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.92  E-value=0.038  Score=43.42  Aligned_cols=125  Identities=12%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             hHHHHhcCcHHHHHHhhcCCCC-----HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCC--CHHHHHHHHH
Q 017651          110 IEEVIQSGVVPRFVEFLMREDY-----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVW  182 (368)
Q Consensus       110 ~~~~i~~g~i~~Lv~lL~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~  182 (368)
                      ..+++..|++..|++++.++..     .++...++.++..+-.+.--. -..++...|...+.+.+.+  +..+.+.|+.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4578889999999999988662     366677778888877753222 2344445677777777653  5899999999


Q ss_pred             HHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651          183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (368)
Q Consensus       183 ~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  236 (368)
                      .|-++...++.....+.+.=-++.|+..| +..+++++.++...+-.|....+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hL-q~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHL-QVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999999887667776665689999999 778999999999999888877543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.091  Score=44.56  Aligned_cols=196  Identities=15%  Similarity=0.185  Sum_probs=127.2

Q ss_pred             ccHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           74 ESLPAMVAGVW--SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        74 ~~i~~l~~~l~--~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      ++++.++..+.  ++.+-++.+|..+|..+..            .+.++.+-++.+++- ..++..+..++..+--.+.-
T Consensus        67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~------------~~~~~~l~k~~~dp~-~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD------------PESLEILTKYIKDPC-KEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             hhhHHHHHHhcccccchHHHHHHHHHHHhhcc------------hhhHHHHHHHhcCCc-cccchHHHHHHHHHHHhhcc
Confidence            46889998887  4567888899999988752            224566667775555 56766666666555331110


Q ss_pred             ch----HHH--h------hCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch
Q 017651          152 NT----KVV--I------DHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL  217 (368)
Q Consensus       152 ~~----~~~--~------~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~  217 (368)
                      ..    ..+  +      ..+-+.-+-..|.+..  ..-+..+.+.|.|+-++.           .|..|.+-+ ..++.
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l-~~~Sa  201 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGL-ADDSA  201 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhc-ccchH
Confidence            00    000  0      1112333444333322  223456777777764432           356667767 55577


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651          218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (368)
Q Consensus       218 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL  295 (368)
                      -++..++++|..|-..          ..+|.|.+.|..  ..+-|+..|+.+|+.+++.  +         .++.|.+++
T Consensus       202 lfrhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~---------~~~vL~e~~  260 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--D---------CVEVLKEYL  260 (289)
T ss_pred             HHHHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--H---------HHHHHHHHc
Confidence            8888999999988754          477888887754  4688999999999999853  2         367788889


Q ss_pred             CCCCcchHHHHHHHHHHhhc
Q 017651          296 GHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       296 ~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .++++-+++.|..++..+-.
T Consensus       261 ~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  261 GDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             CCcHHHHHHHHHHHHHHHHH
Confidence            88888888887777665543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.85  E-value=0.0018  Score=48.07  Aligned_cols=72  Identities=25%  Similarity=0.371  Sum_probs=60.3

Q ss_pred             chHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          244 PALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       244 ~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .++..|+.+| .+.|+.+..-||.=|+.++...+.....+-+.|+-..+++++.+++++++..|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            5778899999 44578889999999999998877776666677999999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.85  E-value=0.047  Score=49.95  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=121.1

Q ss_pred             HHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           76 LPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        76 i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      +..++..+.+. ..+.+..|+..|..+++.. +..+..-.-..++..+++.|.+..++.++..|+++|..++...+.   
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---  363 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---  363 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---
Confidence            44444455433 4677788888899887754 333222112345777888898844488999999999999985332   


Q ss_pred             HHhhC--CChHHHHHhhCCCCHHHHHHHHHH-HHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          155 VVIDH--GAVPIFVKLLASPSDDVREQAVWA-LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       155 ~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~-L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      .+.+.  -+|..+++.-.+.++++...|..+ +.-++...|..        .|..+..++ ...|......++..+..++
T Consensus       364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~I-lt~D~~~~~~~iKm~Tkl~  434 (516)
T KOG2956|consen  364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLI-LTADEPRAVAVIKMLTKLF  434 (516)
T ss_pred             hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHH-hcCcchHHHHHHHHHHHHH
Confidence            22221  245566666666667666666554 44455555542        244455555 3356666677788888888


Q ss_pred             cCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651          232 RGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       232 ~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~  273 (368)
                      ..-+.... ..+..+.|.+++...+....|+..+..||..+..
T Consensus       435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            76533322 3346788889998899999999999999988873

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.82  E-value=0.1  Score=48.83  Aligned_cols=205  Identities=16%  Similarity=0.186  Sum_probs=126.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh-CCC----CHHHHHHHHHHHHHhhC-CC
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASP----SDDVREQAVWALGNVAG-DS  191 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~----~~~v~~~a~~~L~nla~-~~  191 (368)
                      ++..++.+..+..++..+..++.+++.++...+...  .++ ..+..+...+ ...    .....+..+|+.-.+.. .+
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            455666665555547888888888888877421111  111 2233333333 122    23444555666655543 33


Q ss_pred             hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CC---C---------ChhhhhchHHHHHHhhcCCCH
Q 017651          192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ---P---------PFDQVRPALPALAQLVHSNDE  258 (368)
Q Consensus       192 ~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~---~---------~~~~~~~~~~~L~~lL~~~d~  258 (368)
                      +...      ..+..|+.++ .+  +++-..++.++.-+.... ..   .         .......++|.|++.....+.
T Consensus       267 ~~~~------~~~~~L~~lL-~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~  337 (415)
T PF12460_consen  267 PLAT------ELLDKLLELL-SS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD  337 (415)
T ss_pred             chHH------HHHHHHHHHh-CC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence            3221      1456677777 33  667778888888877662 11   0         112235677888888887777


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651          259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG  335 (368)
Q Consensus       259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~  335 (368)
                      +.+..-+.+|+++..+-+..+-.---..++|.+++-|+.+++.++..++.++..+....++....-++ .+++.|+.
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            78888999999999876644322222368899999999999999999999999999887654443222 34444443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.81  E-value=0.21  Score=44.46  Aligned_cols=171  Identities=16%  Similarity=0.136  Sum_probs=109.7

Q ss_pred             CcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Chhh
Q 017651          117 GVVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRC  194 (368)
Q Consensus       117 g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~  194 (368)
                      +++..|+ ..+.+++ +.+|..|+.||+-.+--+.+...     ..++.+...+..++..++..|+.++..+..- +...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4455554 7778888 89999999999999985443222     2367777877777899999999999998632 1111


Q ss_pred             HHHHH-------hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh-hc---CCCHHHHHH
Q 017651          195 RDLVL-------SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL-VH---SNDEEVLTD  263 (368)
Q Consensus       195 ~~~i~-------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l-L~---~~d~~v~~~  263 (368)
                      -+...       ....+..+.+.+ .+.+++++..++..++.|.-......   ...++..|+-+ ++   .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11111       123455666666 55588899999999999876653222   12333333322 22   234566666


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651          264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  298 (368)
                      ....+-..+...... +..+...+++.+..+...+
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666677777666655 4555566777777776543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.78  E-value=0.062  Score=49.30  Aligned_cols=141  Identities=13%  Similarity=0.193  Sum_probs=103.9

Q ss_pred             CCchHHHHh-cCcHHHHHHhhcCCCC--HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-C---CCHHHHHH
Q 017651          107 SPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-S---PSDDVREQ  179 (368)
Q Consensus       107 ~~~~~~~i~-~g~i~~Lv~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~v~~~  179 (368)
                      ....+.+++ ..+...|...+.+...  +.+-..|+.+++.+....|.....+.+.|.++.+++.+. .   ++.++...
T Consensus        95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~  174 (379)
T PF06025_consen   95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS  174 (379)
T ss_pred             ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence            344455667 5667778888877532  688899999999999988999999999999999999887 3   56788888


Q ss_pred             HHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccch------hHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 017651          180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL------SMLRNATWTLSNFCRGKPQPPFDQVRPALPA  248 (368)
Q Consensus       180 a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  248 (368)
                      .-.+|+.||-+.. ..+.+.+.+.++.+++.+......      +........+-.|.++-|.-....+..++..
T Consensus       175 lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~  248 (379)
T PF06025_consen  175 LPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKI  248 (379)
T ss_pred             HHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            8899999998875 567888889999999998433221      4455566677778887654444333333333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.77  E-value=0.21  Score=47.67  Aligned_cols=135  Identities=18%  Similarity=0.192  Sum_probs=89.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.+..++...+. +......|+..+.++...- +...+.     .+..++.|..+.+ ..||..|+..|..+|.++++..
T Consensus        23 ~~y~~il~~~kg-~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v   94 (556)
T PF05918_consen   23 EDYKEILDGVKG-SPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV   94 (556)
T ss_dssp             HHHHHHHHGGGS--HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence            457777777774 6778889999999997653 333332     4889999999988 8999999999999999887776


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--cccchhHHHHHHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSN  229 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~  229 (368)
                      ..+     ++.|+++|.++++.-...+=++|..+...++..        .+..+...+.  ...++.+++.++..|..
T Consensus        95 ~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen   95 SKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             hHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            654     578999999988777777777887776555432        3455555553  24566777777776654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.75  E-value=0.014  Score=47.94  Aligned_cols=147  Identities=14%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             HHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH
Q 017651           35 EIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI  114 (368)
Q Consensus        35 ~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i  114 (368)
                      ++=..+|-+++.+.+...............    ..........+++.+.+.....  ..+..|+..+..+...-++.++
T Consensus        31 ~~~~ekKw~li~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl  104 (187)
T PF06371_consen   31 NLPPEKKWQLIQQHRQKQAKHSSSSSKSKS----KASAKSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFL  104 (187)
T ss_dssp             TS-HHHHHHHHHHHHHH---------------------CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-
T ss_pred             CCCHHHHHHHHHhHHHhccccchhhhhhhh----hhhhhhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhc
Confidence            444666677776666543322200000000    0011134566778887665432  5555666555543223356788


Q ss_pred             hcCcHHHHHHhhcC--------CCCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017651          115 QSGVVPRFVEFLMR--------EDYPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALG  185 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~  185 (368)
                      +.|++..|+.+|..        ..+..+..+++.||..|... ......++. .+++..++..|.+++..++..++.+|+
T Consensus       105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~  183 (187)
T PF06371_consen  105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999998863        12368899999999999984 444555554 689999999999999999999999999


Q ss_pred             Hhh
Q 017651          186 NVA  188 (368)
Q Consensus       186 nla  188 (368)
                      .+|
T Consensus       184 ~lc  186 (187)
T PF06371_consen  184 ALC  186 (187)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.72  E-value=0.13  Score=47.29  Aligned_cols=147  Identities=13%  Similarity=0.169  Sum_probs=98.1

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHH-HHHhhcCChHHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA-LSYLSDGTNDKIQA  281 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~-l~~l~~~~~~~~~~  281 (368)
                      ++..+++.|..+.+......|+..|..+|+..+..-+...+-.+..+++.-.+.++++...|..+ +.-++.+.+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            45667778855578888999999999999986655555545555555555555556665555544 44444444433   


Q ss_pred             HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       282 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                           .+..+..++-..+...-..++..+..++..-+...-..+-..+.|.+++...+. +..|||.|.++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 244445555446666667777788888765432111122237899999999998 99999999999998875

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.70  E-value=0.16  Score=50.57  Aligned_cols=226  Identities=15%  Similarity=0.148  Sum_probs=152.9

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      ..|.++..+++.. +.++....+.+..+-..++......+....+|.+..+-.+....++...++.+.-++....  . .
T Consensus       438 llp~~~~~l~de~-~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~-~  513 (759)
T KOG0211|consen  438 LLPLLIGNLKDED-PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V-E  513 (759)
T ss_pred             cChhhhhhcchhh-HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h-H
Confidence            4677777788777 8999999998877766566666666666778888888887788999999998888876532  1 1


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                      +.....-+.+..-+ .+....++..++..+..++.... ... .....+|.++.....++...+...+.++.-++.-   
T Consensus       514 ~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v---  587 (759)
T KOG0211|consen  514 FFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV---  587 (759)
T ss_pred             HhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH---
Confidence            11111112222222 44466888899999998887654 222 2235667666666665677777777777766632   


Q ss_pred             HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       278 ~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      ..+.+....+++.+..+..++.+.+|..++..+..+...-.   ....+..+.|.+..+-++. +.++|-.|.-+.+-+.
T Consensus       588 ~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~---~~~~~~~v~pll~~L~~d~-~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  588 LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD---ESVRDEEVLPLLETLSSDQ-ELDVRYRAILAFGSIE  663 (759)
T ss_pred             hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc---hHHHHHHHHHHHHHhccCc-ccchhHHHHHHHHHHH
Confidence            11234445678889999999999999999999998876433   2344555666666666665 7777776666555443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.64  E-value=0.016  Score=58.49  Aligned_cols=143  Identities=24%  Similarity=0.245  Sum_probs=111.2

Q ss_pred             CcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 017651          117 GVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP  192 (368)
Q Consensus       117 g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~  192 (368)
                      .+.|.+++..+.+   .+|++|..|.-+|+.+..-+.+...     ..+|.|+..|. ++++.++..+.-++|-++..-|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3577788888543   2399999999999998875444332     35799999997 7999999999999999987666


Q ss_pred             hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      ..-+.     .-+.|...| .+.++.+++.|..++++|...+    +..+.|.++.+..+|.+++++|..-|=..+..|+
T Consensus       994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            53222     356677777 8889999999999999999763    4556789999999999999988877776666665


Q ss_pred             cC
Q 017651          273 DG  274 (368)
Q Consensus       273 ~~  274 (368)
                      ..
T Consensus      1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred             hc
Confidence            44

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.064  Score=52.65  Aligned_cols=228  Identities=14%  Similarity=0.146  Sum_probs=143.6

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      ++.+...+..+.++.+..+-.|+..+++++..  ......+...+++..++..|++.+ +-+-..|+..+..+|.-.   
T Consensus       726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy---  799 (982)
T KOG4653|consen  726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVY---  799 (982)
T ss_pred             HHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhc---
Confidence            34577788888888888999999999999863  244445667889999999999988 788888999888888742   


Q ss_pred             hHHHhhCCChHHHHH-hhCCCC---HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651          153 TKVVIDHGAVPIFVK-LLASPS---DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~-lL~~~~---~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  228 (368)
                           ...++|.+.. +.+..+   ++.+-....++++++....+....-.. -.+..++.-+ .+++...+..++..++
T Consensus       800 -----~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~lg  872 (982)
T KOG4653|consen  800 -----PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANLG  872 (982)
T ss_pred             -----chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHHH
Confidence                 2357788887 443311   233334457777776432221111111 1344555555 4667778889999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHH---cCChHHHHHhc-CCCCcchH
Q 017651          229 NFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELL-GHPSPSVL  303 (368)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL-~~~~~~v~  303 (368)
                      ++|+-........+..++..++.+...++ .-++..|+-.+..+..+-....-.+..   -.....+..+. .+++..++
T Consensus       873 ~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~k  952 (982)
T KOG4653|consen  873 QLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLK  952 (982)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99986533333355566666777776654 678888988888887654322222221   12333344444 33445566


Q ss_pred             HHHHHHHHHh
Q 017651          304 IPALRTVGNI  313 (368)
Q Consensus       304 ~~a~~~l~nl  313 (368)
                      ..|+.++--+
T Consensus       953 lhaql~leei  962 (982)
T KOG4653|consen  953 LHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHH
Confidence            6666555433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.60  E-value=0.0025  Score=35.26  Aligned_cols=28  Identities=43%  Similarity=0.738  Sum_probs=25.4

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAG  189 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~  189 (368)
                      +|.+++++.++++++|..|+++|+.|+.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.56  E-value=0.0031  Score=57.51  Aligned_cols=151  Identities=21%  Similarity=0.256  Sum_probs=90.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhc----CCCc---chHHHhhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhh
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIAS----GTSE---NTKVVIDHGAVPIFVKLLA---SPSDDVREQAVWALGNVA  188 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~----~~~~---~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nla  188 (368)
                      .......|.+.. -..|..++|.++||+.    +.+.   ....+.. -.+..++..-.   ..+..++..+..+|+|+.
T Consensus       435 a~~il~sl~d~~-ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  435 ANAILMSLEDKS-LNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHhhhHh-HhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            344444444444 5789999999999975    2222   1121211 11222222221   256789999999999997


Q ss_pred             CCC-----hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-CCCHHH
Q 017651          189 GDS-----PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH-SNDEEV  260 (368)
Q Consensus       189 ~~~-----~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~-~~d~~v  260 (368)
                      .--     +.++.  ...+.+..++....-...-.++.++|.+++||..+.  +-........+++.|..++. +.+-+|
T Consensus       513 Qvlq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV  590 (728)
T KOG4535|consen  513 QFLQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV  590 (728)
T ss_pred             HHHHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence            421     11111  111223333333223346789999999999999886  23333444567888888875 457889


Q ss_pred             HHHHHHHHHHhhc
Q 017651          261 LTDACWALSYLSD  273 (368)
Q Consensus       261 ~~~a~~~l~~l~~  273 (368)
                      +..|+.+|..-..
T Consensus       591 Ri~AA~aL~vp~~  603 (728)
T KOG4535|consen  591 RIRAAAALSVPGK  603 (728)
T ss_pred             eehhhhhhcCCCC
Confidence            9999888876553

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.55  E-value=0.027  Score=55.58  Aligned_cols=189  Identities=21%  Similarity=0.184  Sum_probs=130.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH--------H----hhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV--------V----IDHGAVPIFVKLLASPSDDVREQAVWALGN  186 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------~----~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  186 (368)
                      -..|+.+|+.+   ++-..++.++.-+..+++.....        +    .-..++|.|++.........+..-+.+|.+
T Consensus       817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            45667777653   34455666666666554332211        1    113578999998886666778888889999


Q ss_pred             hhCCChhhHHHHHhc--CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCC---HHHH
Q 017651          187 VAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND---EEVL  261 (368)
Q Consensus       187 la~~~~~~~~~i~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d---~~v~  261 (368)
                      +..+-|.  ..+...  ..+|.|++.| .-+|..++..+..++.-+....+.-.-.....++|.++.+=.++|   ..|+
T Consensus       894 Vl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  894 VLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence            9887664  233321  2355555666 677899989999999988766555555566788898888876665   5789


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       262 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                      ..|+.++..|+..-+-..-......++..+.+.|+++.--+|..|.++=++.
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            9999999999984333323344456889999999999888999998765543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.53  E-value=0.15  Score=42.79  Aligned_cols=145  Identities=12%  Similarity=0.152  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCCcchHHHhhCCCh
Q 017651           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAV  162 (368)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i  162 (368)
                      ..-...|+..+.-++|.  ++....+++..+=-.|..+|...+    ..-+|..++.+++.+.. ++.+....+...++|
T Consensus        93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            33445555555555542  555666777776556677776432    26799999999999987 334555677788999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-------ChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-------ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      |..++.+..++..-+..|..++..|..++....-......       .+..++..+...++..+..++..+..+|+.+.
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999887643322111111       23344444446778899999999999999763

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.51  E-value=0.18  Score=50.54  Aligned_cols=185  Identities=15%  Similarity=0.141  Sum_probs=129.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      .+-..+.+.++..+.+|+..+...++...  -.......|.+-.++.....+.+..+...|+.+|..|+.........+.
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            34445568899999999999999987532  1111123445555666555554488999999999999986655433333


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-C
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-Q  236 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~  236 (368)
                       .+.+|.|+..+.+....+++.+..++-.++...+-       ...++.++..+ .+.++.+...+...+....+... .
T Consensus       335 -~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  335 -KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             -HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence             36889999999988888888777777666553321       11466777777 78888888776666666555442 2


Q ss_pred             -CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651          237 -PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       237 -~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~  273 (368)
                       .....+..++|.++....+.+.+|+..+..+++-+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence             2233457889999999999999999999999987763

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.48  E-value=0.068  Score=50.91  Aligned_cols=129  Identities=19%  Similarity=0.177  Sum_probs=82.5

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 017651          121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS  200 (368)
Q Consensus       121 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~  200 (368)
                      .++...+ ++ +..+..|+..+.......|+..+.     ++..+++|..+++..||.+|+..|..+|.+.++....   
T Consensus        27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---   96 (556)
T PF05918_consen   27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---   96 (556)
T ss_dssp             HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred             HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence            3444444 34 789999999999998887776654     5678899999999999999999999999998765443   


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHH
Q 017651          201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALS  269 (368)
Q Consensus       201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~  269 (368)
                        +.+.|.++| ..++..-...+-++|..|...+|       .+.+..+...+.   +.|+.++..++..|.
T Consensus        97 --vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   97 --VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             --HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             --HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence              467788888 56666656666677776665432       233444443333   456777888776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.45  E-value=0.1  Score=46.41  Aligned_cols=170  Identities=17%  Similarity=0.081  Sum_probs=113.1

Q ss_pred             CChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017651          160 GAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  238 (368)
Q Consensus       160 g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  238 (368)
                      +.+..|+ ..+.++++.+++.++.+||-.+--+.....   +  .++.+...+ ..++..++..++.++..+....+...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~---~--~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK---E--HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH---H--HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3444444 567788999999999999999866543322   2  467778888 55689999999999998776432221


Q ss_pred             hh---------hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh-cC---CCCcchHHH
Q 017651          239 FD---------QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LG---HPSPSVLIP  305 (368)
Q Consensus       239 ~~---------~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~---~~~~~v~~~  305 (368)
                      +.         ....++..+.+.+.+.+++++..++..++.|.-.+.-..    ...++..|+-+ .+   .++..++.-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11         124577788889999999999999999999875422111    01234444333 22   234566666


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651          306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       306 a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                      -...+-..+..++.+. ..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence            6666777777776554 455567778877777665

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.43  E-value=0.006  Score=33.69  Aligned_cols=30  Identities=30%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          245 ALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      ++|.+.+++++++++|+..|+++|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.39  E-value=0.47  Score=41.41  Aligned_cols=202  Identities=12%  Similarity=0.096  Sum_probs=134.4

Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHHhccccc-hhHHHHHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAK-LSMLRNATWTLS  228 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~----~~~~i~~~~~i~~l~~~l~~~~~-~~~~~~a~~~L~  228 (368)
                      ..+.++|.++.|+..+..-+-+-+.-++.+..|+-...-.    ..+.+..  -.+.+-.++....+ +++.-.+...+.
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t--~~e~~~~lv~~~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET--NPEILDNLVKGYENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh--CHHHHHHHHhhhccchHHHHHHHHHHH
Confidence            3455678999999999888888888899999888643322    2233332  13334444433332 444444444444


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhcCCCCcchHH
Q 017651          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLGHPSPSVLI  304 (368)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~L~~lL~~~~~~v~~  304 (368)
                      ...+...-........-+.......+.+.-++..+|..++..+.......+..++..+.    .+.--.++.+.+.-.+.
T Consensus       151 Ecirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr  230 (342)
T KOG1566|consen  151 ECIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR  230 (342)
T ss_pred             HHHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence            44444322222233445556666677777899999999999887665555555555433    33356677899999999


Q ss_pred             HHHHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          305 PALRTVGNIVTGDD---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       305 ~a~~~l~nl~~~~~---~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .++..+|.+..+.+   ..++++-+..-+..++.+|.++ ...++-+|-.+.--+.+
T Consensus       231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            99999999976543   3445555557799999999999 99999999888777776

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.31  E-value=1.1  Score=45.25  Aligned_cols=238  Identities=18%  Similarity=0.200  Sum_probs=143.7

Q ss_pred             hcCcHHHHHHhhcCCCC----HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 017651          115 QSGVVPRFVEFLMREDY----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----SPS----DDVREQAVW  182 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~v~~~a~~  182 (368)
                      +.|++..+++++.+-.+    ...-...+.+|..++. -..+++.+++.|+++.|+..+.    ++.    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            57889999998876321    2444455666666666 5889999999999999998774    333    678888887


Q ss_pred             HHHHhhCCChh--hH--HHHHhcC--------ChHHHHHHhccc---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017651          183 ALGNVAGDSPR--CR--DLVLSQG--------ALIPLLAQLNER---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP  247 (368)
Q Consensus       183 ~L~nla~~~~~--~~--~~i~~~~--------~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  247 (368)
                      ++.-+..+...  ..  .......        -+..|++.+...   .+..+....+..|-+|+.+.+......+..+-|
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p  273 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP  273 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence            77777543211  00  0001111        266667776432   368889999999999998864333323222222


Q ss_pred             HHHHhhc-----CCCHHHHHHHHHHHHHhhcC------ChHHHHHHHHcCChHHHHHhcCCC--------Cc--------
Q 017651          248 ALAQLVH-----SNDEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLGHP--------SP--------  300 (368)
Q Consensus       248 ~L~~lL~-----~~d~~v~~~a~~~l~~l~~~------~~~~~~~~~~~~~~~~L~~lL~~~--------~~--------  300 (368)
                      .+ ++=.     ..+..+   .+.+++.++.+      .....+.+++.|++...+.+|...        ++        
T Consensus       274 ~l-~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~  349 (802)
T PF13764_consen  274 YL-DFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR  349 (802)
T ss_pred             hc-ChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence            22 2111     111222   35555555533      134457788999999988888322        11        


Q ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .....++..|.-++.+.. .++..+..++++.+..+=+.+....+-.-|--+|-.+..
T Consensus       350 psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  350 PSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            123567888888888766 455567778886555544433244555555555555554

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.31  E-value=0.048  Score=43.52  Aligned_cols=147  Identities=10%  Similarity=0.057  Sum_probs=88.9

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      .+++.|+.+|+.+.+..+|.+++++|+.|-.-++...+.+....  +.-  .-.+.+........... ++....    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~~-~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPMM-GISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhhc-cCCCch----H
Confidence            45788899998876699999999999999886565444222211  100  00111122222222211 121112    2


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      ......++..|++.|+...-..-...++.++.++..............++|.++..+++.+...++...+-|+.|.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2222336788888885444444555677777777755444556677889999999998777777777777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.24  E-value=0.071  Score=54.15  Aligned_cols=142  Identities=17%  Similarity=0.151  Sum_probs=110.6

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651          161 AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (368)
Q Consensus       161 ~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  236 (368)
                      ..|.++...+.    .+++++..|.-+|+.+..-+..+.+.     .++.|+..+..++++-++.+++-+++.|+-..|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            34666666643    57999999999999998766554332     5899999998899999999999999988876553


Q ss_pred             CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          237 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      .    +...-+.|...|++.++.|+..|...+++|...+     .+--.|.+..+...|.+++..++.-|=...--|+..
T Consensus       995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            2    3456678889999999999999999999998653     333358899999999999988887776555555443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.23  E-value=0.21  Score=42.57  Aligned_cols=188  Identities=16%  Similarity=0.168  Sum_probs=121.8

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCchHH-HH-hcCcHHHHHHhhcC-------CC-CH---HHHHHHHHHHHHHhcCCCcch
Q 017651           87 DSSLQLEATTQFRKLLSIERSPPIEE-VI-QSGVVPRFVEFLMR-------ED-YP---QLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~-~i-~~g~i~~Lv~lL~~-------~~-~~---~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +++.+..|+..|.+--..  .+.... +. ..|.+..|++=+-+       +. .+   .-.-.|+..|.-+|+ .++.+
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence            577888999888876432  333433 33 45767776543322       21 12   223445555666777 58999


Q ss_pred             HHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  227 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~-~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  227 (368)
                      ..++++.+.-.|..+|+.     +.+.++-.++.++|.+.. ++++.-..+.+.+++|..++.+ ..+++--+..|...+
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence            999999887777777764     236788899999999985 4567788889999999999999 555666677788888


Q ss_pred             HHhhcCCCC--------CChhhhhchHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017651          228 SNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGTNDK  278 (368)
Q Consensus       228 ~~l~~~~~~--------~~~~~~~~~~~~L~-~lL~~~d~~v~~~a~~~l~~l~~~~~~~  278 (368)
                      ..+..++..        ..+..+..++..++ .+...+++.+...+++|...|++++...
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar  223 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR  223 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence            776655411        11222334444433 3345678999999999999999886544

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.21  Score=48.46  Aligned_cols=176  Identities=22%  Similarity=0.152  Sum_probs=111.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  241 (368)
                      =+.+-.++.+.++-+|...+.+++---....       ..++|..|+..--.+.+.++++.|.-+|.-+|..+|      
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------  587 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------  587 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh------
Confidence            3444556677777777776666543221111       123566666664367899999999999998887765      


Q ss_pred             hhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          242 VRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       242 ~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                        ...|..+.+|. +-++.|+.-++.+|+-.|.+.....       .+..|-.+.+++..-+|..|+-+++-|.....+.
T Consensus       588 --~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~  658 (929)
T KOG2062|consen  588 --EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ  658 (929)
T ss_pred             --hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence              35566677775 5589999999999998887644331       2445555666777889999999999885432211


Q ss_pred             HHHHHHcCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCC
Q 017651          321 TQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGN  360 (368)
Q Consensus       321 ~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~  360 (368)
                      ...=+ .++...+.+++.+.. +.-.+-.|+.+=+-+-+|.
T Consensus       659 ~~pkv-~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGG  698 (929)
T KOG2062|consen  659 LCPKV-NGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGG  698 (929)
T ss_pred             cCchH-HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCC
Confidence            11111 145566667776542 3345555665555454443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.21  E-value=0.52  Score=47.34  Aligned_cols=211  Identities=16%  Similarity=0.194  Sum_probs=124.9

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC
Q 017651          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGD  190 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~  190 (368)
                      ......+|+-|.++...+.-.+-...++++.          .+.|++..++.++.+     ....+....+..|...+.-
T Consensus        83 geAtE~~v~~l~~~~~~~~d~e~~~~~~~v~----------~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv  152 (802)
T PF13764_consen   83 GEATEEFVESLEDDSEEEEDPEQEFKIASVL----------AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV  152 (802)
T ss_pred             CccchhhHhhccCccccccCHHHHHHHHHHh----------hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh
Confidence            3455667777765332222222223333322          235889999988875     3345666666766666655


Q ss_pred             ChhhHHHHHhcCChHHHHHHhc---cccc----hhHHHHHHHHHHHhhcCCCCCChh-------------hhhchHHHHH
Q 017651          191 SPRCRDLVLSQGALIPLLAQLN---ERAK----LSMLRNATWTLSNFCRGKPQPPFD-------------QVRPALPALA  250 (368)
Q Consensus       191 ~~~~~~~i~~~~~i~~l~~~l~---~~~~----~~~~~~a~~~L~~l~~~~~~~~~~-------------~~~~~~~~L~  250 (368)
                       +.+|..+++.|+++.|+..+.   ....    ..+.+..+..+..+..........             ....-+..++
T Consensus       153 -~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL  231 (802)
T PF13764_consen  153 -KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLL  231 (802)
T ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHH
Confidence             678999999999999998884   2222    455555555555444332111000             0123355666


Q ss_pred             HhhcC----CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc--CCCCcchHHHHHHHHHHhhcCC------h
Q 017651          251 QLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSPSVLIPALRTVGNIVTGD------D  318 (368)
Q Consensus       251 ~lL~~----~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~a~~~l~nl~~~~------~  318 (368)
                      +.+.+    .++.+....+.+|.+|+.+.++..+.+++.  +...+.+=  ......--...+.+++.++.+-      .
T Consensus       232 ~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~  309 (802)
T PF13764_consen  232 ERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGN  309 (802)
T ss_pred             HHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchH
Confidence            66654    368999999999999999999888877653  22222221  1111111123355666665432      3


Q ss_pred             HHHHHHHHcCChHHHHHhhCC
Q 017651          319 FQTQCIITYGALPYLLGLLTH  339 (368)
Q Consensus       319 ~~~~~~~~~g~l~~l~~ll~~  339 (368)
                      ...+.+++.|++...++.|..
T Consensus       310 ~LK~~Il~~GIv~~a~~YL~~  330 (802)
T PF13764_consen  310 RLKDKILESGIVQDAIDYLLK  330 (802)
T ss_pred             HHHHHHHHhhHHHHHHHHHHH
Confidence            566778888999888777754

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.08  E-value=0.19  Score=40.90  Aligned_cols=141  Identities=18%  Similarity=0.158  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhcC-CCcc-----hHHHhh-----CCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017651          134 LQFEAAWALTNIASG-TSEN-----TKVVID-----HGA-VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  201 (368)
Q Consensus       134 v~~~a~~~L~~l~~~-~~~~-----~~~~~~-----~g~-i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~  201 (368)
                      +|..|+.+|..++.. .+..     ...+-+     .+. .+.+.-++.++++.+|..|+.++..|..+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566677777777664 1110     011111     123 3444457788999999999999999987654433333211


Q ss_pred             C----C---------------hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC--hhhhhchHHHHHHhhcCCCHHH
Q 017651          202 G----A---------------LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--FDQVRPALPALAQLVHSNDEEV  260 (368)
Q Consensus       202 ~----~---------------i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~L~~lL~~~d~~v  260 (368)
                      +    .               -..|+..|....+..+...++.++..|....|-..  ......++..+..++.+.|+.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1    1               23344555556688889999999999998875433  3444667777778888999999


Q ss_pred             HHHHHHHHHHhhcC
Q 017651          261 LTDACWALSYLSDG  274 (368)
Q Consensus       261 ~~~a~~~l~~l~~~  274 (368)
                      +..++.+++-+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999888754

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.05  E-value=0.81  Score=39.10  Aligned_cols=202  Identities=21%  Similarity=0.171  Sum_probs=122.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  198 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i  198 (368)
                      ++.|+.-+....++..+...+..|..++.+...+..     -++..|..+...+.......+...+..+...++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555455444499999999999999985412221     235566666777777777778888888876554321   


Q ss_pred             HhcCChHHHHHHh---------ccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHH
Q 017651          199 LSQGALIPLLAQL---------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL  268 (368)
Q Consensus       199 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l  268 (368)
                         +.+..++..+         ..+...+.......++..+|...|.    .-..+++.+..+| +++++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444441         1122345555667899999988766    3345778888888 788899999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCC
Q 017651          269 SYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                      ..++...  ..+ +.  .....+.+-|+.+ .+.+....+..++.+..+.- ..........++..+-++..+.
T Consensus       147 ~~Lc~~~--vvd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAE--VVD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHh--hcc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            9999432  111 11  2244455555333 34555444444444443321 1112234446777777777766

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.01  E-value=1  Score=41.82  Aligned_cols=236  Identities=13%  Similarity=0.080  Sum_probs=136.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc--hHHHHhcCcHHHHHHhhcCCC----CH--HHHHHHHHHHHHHhc
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED----YP--QLQFEAAWALTNIAS  147 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~--~~~~i~~g~i~~Lv~lL~~~~----~~--~v~~~a~~~L~~l~~  147 (368)
                      ...+..+.+..+.+.++.|+....+++...+-..  .+.+.+.-+.+.+=++|.+.+    .|  -.+..++.+|+-.|+
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            4456677777888899999999999987652222  234677777888888887632    23  345556677777777


Q ss_pred             CCCcch--HHHhhCCChHHHHHhhCC-C------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017651          148 GTSENT--KVVIDHGAVPIFVKLLAS-P------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS  218 (368)
Q Consensus       148 ~~~~~~--~~~~~~g~i~~L~~lL~~-~------~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~  218 (368)
                      . ++..  ..++  +.||.|..++.. .      +-.+.+.+-.+|..+++..+ -...++..|+++.+.+....++-.-
T Consensus        93 ~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~  168 (698)
T KOG2611|consen   93 V-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSH  168 (698)
T ss_pred             C-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCch
Confidence            4 4332  3344  479999999974 1      23478889999999998854 4567888899999997763222111


Q ss_pred             HHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH-H-HHHHHHcC----ChHH
Q 017651          219 MLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND-K-IQAVIEAG----VCPR  290 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~-~-~~~~~~~~----~~~~  290 (368)
                      -..-++..+.-+....  -.........++..+..-+...+.......|..|..+...... . ........    ...-
T Consensus       169 d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G  248 (698)
T KOG2611|consen  169 DMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG  248 (698)
T ss_pred             hHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence            1111222222111111  1111111222344444444556677788888888855433221 0 01111011    1222


Q ss_pred             HHHhcCCC-CcchHHHHHHHHHHhhc
Q 017651          291 LVELLGHP-SPSVLIPALRTVGNIVT  315 (368)
Q Consensus       291 L~~lL~~~-~~~v~~~a~~~l~nl~~  315 (368)
                      +..+|.+. .+.-|.+|+....|+.+
T Consensus       249 ~~~IL~~kv~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  249 VVAILQNKVAPSQRLPALILAANMMH  274 (698)
T ss_pred             HHHHHhcccCchhcChHHHHHHHHHH
Confidence            34455332 45567788888887764

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.97  E-value=0.06  Score=45.85  Aligned_cols=142  Identities=11%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCCcchHHHhhCCChHHH
Q 017651           91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIF  165 (368)
Q Consensus        91 ~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L  165 (368)
                      ...|+..+.-+++.  ++....++++.+.-.|..+|+..+    ...+|..++.+++.+.. ++.+....+.+.+++|..
T Consensus        67 VcnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc  144 (262)
T PF04078_consen   67 VCNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC  144 (262)
T ss_dssp             HHHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence            33455555555552  667778999998888888887643    15688999999999987 445667788889999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChhhHH------HHHh-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          166 VKLLASPSDDVREQAVWALGNVAGDSPRCRD------LVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       166 ~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~------~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      ++.++.++.--+..|..++..|..++....-      .+.. ..++..++..+...+++.+.+++..|...|+.++
T Consensus       145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            9999998888888999999988766432211      1111 1145555665667789999999999999999874

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.93  E-value=0.069  Score=36.07  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG  328 (368)
Q Consensus       261 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g  328 (368)
                      ...++|++++++..+. -...+.+.++++.++++. .++...+|-.|.++++-++.. .+..+.+-+.|
T Consensus         4 lKaaLWaighIgss~~-G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPL-GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChH-HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            4679999999998644 446666779999999998 467789999999999999874 44556555544

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.93  E-value=0.2  Score=47.36  Aligned_cols=129  Identities=19%  Similarity=0.196  Sum_probs=90.3

Q ss_pred             hhHHHHHHHHHHHhhcCC-CC-C-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651          217 LSMLRNATWTLSNFCRGK-PQ-P-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  293 (368)
Q Consensus       217 ~~~~~~a~~~L~~l~~~~-~~-~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  293 (368)
                      +.+-..++..+..+.... +. + ....+.+++..++..+.+.|..|+..++.+|+-+.+.-.+ ++..+-.|++..|..
T Consensus        61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~  139 (885)
T COG5218          61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSE  139 (885)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHH
Confidence            333344444444444433 22 2 2556688888999999999999999999999999876433 345555688888888


Q ss_pred             hcCCCCcchHHHHHHHHHHhhc--CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          294 LLGHPSPSVLIPALRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       294 lL~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      -+-+..+.+|..|+.+|+.+-.  +++++.       ....|..+++++.+.+||+.|..-|
T Consensus       140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         140 RLFDREKAVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             HHhcchHHHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            8888889999999999998853  333322       2446677777765888988875544

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.90  E-value=0.32  Score=40.93  Aligned_cols=138  Identities=14%  Similarity=0.104  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHH-HHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHH
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-----NDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRL  291 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~-~L~~lL~~-----~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L  291 (368)
                      -..+++..+..++.+ |.....+..--+| .+..+|..     +.+..+..+++.|+.|...+ .+.+..+...++++..
T Consensus        95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            345666666666666 4444444444444 46666643     34778999999999999654 5667788899999999


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH--------cCChHH-HHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--------YGALPY-LLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~--------~g~l~~-l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      ++.+..++...+..|..+++.|...+. ...++-.        .-++.. +.++.+.+ ++.+-|.+..+..+++..
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDV-GLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999886443 2221111        022333 33444455 888888888888888763

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.90  E-value=0.41  Score=44.64  Aligned_cols=234  Identities=15%  Similarity=0.099  Sum_probs=137.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      -+..|+..+.|.|+..|......++++...  -......+...+...|.+++..+.......+.+.+++.+..|..---.
T Consensus       134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk  211 (409)
T PF01603_consen  134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK  211 (409)
T ss_dssp             HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence            377888899999999998888888888664  344555666667788888888665567788899999999886432111


Q ss_pred             HHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          155 VVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .-...-....|+-|.+.+. .....+-..++..+...+|..-..     .+..+++.- ...+..=....+.-+..+...
T Consensus       212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il~~  285 (409)
T PF01603_consen  212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEILEV  285 (409)
T ss_dssp             HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence            1111112233344444433 233456666666666666554222     233333333 233444444555666666655


Q ss_pred             CCCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCC-----CCcchHH
Q 017651          234 KPQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-----PSPSVLI  304 (368)
Q Consensus       234 ~~~~~~~-~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~  304 (368)
                      -+...+. ....++..+...+.+.+..|...|+....|      +..-.++..   .+++.+...|..     =+..++.
T Consensus       286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n------~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~  359 (409)
T PF01603_consen  286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN------EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRN  359 (409)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS------HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC------HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4333332 225566777888889999998888765432      222223322   256777766632     1578999


Q ss_pred             HHHHHHHHhhcCChHHHH
Q 017651          305 PALRTVGNIVTGDDFQTQ  322 (368)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~  322 (368)
                      .|..++.-+..-++...+
T Consensus       360 ~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  360 LAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHH
Confidence            999999998887765444

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.89  E-value=0.022  Score=45.30  Aligned_cols=148  Identities=20%  Similarity=0.187  Sum_probs=99.2

Q ss_pred             ChHHHHHHhcc-ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651          203 ALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA  281 (368)
Q Consensus       203 ~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~  281 (368)
                      .++.++..|.. ...++++..+.-++..+-..   ........+-+.+..++...+.+-...++.++..+-...++....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            35556666644 56778888888888887411   111111223344555555555567778888888888888877766


Q ss_pred             HH-HcCChHHHHHhcC--CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCcc-HHHHHHHHHHH
Q 017651          282 VI-EAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS-IKKEACWTISN  355 (368)
Q Consensus       282 ~~-~~~~~~~L~~lL~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~-v~~~a~~~l~n  355 (368)
                      ++ ..|+.+.++....  ..+..++..++.+|..=|. .. .+...+...++++|-.+++.+.++. +|..|+-+|.-
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            65 5588999999987  6778888888888876654 33 3444555588999999997653555 88888877754

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.85  E-value=0.07  Score=42.45  Aligned_cols=145  Identities=19%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             ChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017651          161 AVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  238 (368)
Q Consensus       161 ~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  238 (368)
                      .++.++..|.  ...++++.++.-++..+-   +..++...+  .+..++..+....+.+-...++.++..+....|...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence            3555555554  356788999999998884   334444433  344444443344455566778888888887654433


Q ss_pred             hhh--hhchHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC-CCCcc-hHHHHHHHHHH
Q 017651          239 FDQ--VRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPS-VLIPALRTVGN  312 (368)
Q Consensus       239 ~~~--~~~~~~~L~~lL~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~-v~~~a~~~l~n  312 (368)
                      ...  ..++++.+..+..  ..+..+...++.+|..=|.. ... ...+...+++.|-..++ ++++. ++..|+-+|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            332  2788999999998  77889999999998776654 333 44455567888888885 44455 78888776653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.84  E-value=0.036  Score=37.43  Aligned_cols=66  Identities=20%  Similarity=0.341  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651          135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQG  202 (368)
Q Consensus       135 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~  202 (368)
                      ...|+|+++++++ ++.....+.+.++++.++++..+ +...+|-.|.++|+-++... +..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence            4679999999998 46666666678999999998874 67899999999999998765 4455555544

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=95.84  E-value=0.8  Score=45.43  Aligned_cols=196  Identities=17%  Similarity=0.119  Sum_probs=112.1

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      .+..+.+++....  --..+|++.|..+......-...     .+..+..++.+    .++.++..|+-+++.+......
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            3556677777644  22344556666655532222222     34555666654    4577888899999888642111


Q ss_pred             h---------HHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC---CH
Q 017651          194 C---------RDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DE  258 (368)
Q Consensus       194 ~---------~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~---d~  258 (368)
                      .         .........++.+...+.   ...+..-...++.+|.|+-..          ..++.+..++...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence            1         111222336777777775   234567778889999998753          5788888888766   68


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651          259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL  336 (368)
Q Consensus       259 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~l  336 (368)
                      .++..|++++..++...++.+        .+.+.+++.+  .++++|..|+.+|-..   ++..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            899999999999987766553        4556666633  3577888887665542   2211       125556667


Q ss_pred             hCCCCCccHHHH
Q 017651          337 LTHSHKKSIKKE  348 (368)
Q Consensus       337 l~~~~~~~v~~~  348 (368)
                      +..+.+..|...
T Consensus       601 l~~E~~~QV~sf  612 (618)
T PF01347_consen  601 LWNEPSNQVASF  612 (618)
T ss_dssp             HTT-S-HHHHHH
T ss_pred             HhhCchHHHHHH
Confidence            766534444443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.12  Score=48.53  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             chHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHH
Q 017651          244 PALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQT  321 (368)
Q Consensus       244 ~~~~~L~~l-L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~  321 (368)
                      +++..++.. .++.+.+|+..|.-+|+.+|..+.+.         +...+++| .+.++.+|.....+||-.|++...+.
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~---------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~  621 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL---------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV  621 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcch---------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence            455555555 45667889999999999888765443         55667776 56678899999999998888776443


Q ss_pred             HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       322 ~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .       +..|-.++.+. ..-||..||-+++-|.-
T Consensus       622 a-------~diL~~L~~D~-~dfVRQ~AmIa~~mIl~  650 (926)
T COG5116         622 A-------TDILEALMYDT-NDFVRQSAMIAVGMILM  650 (926)
T ss_pred             H-------HHHHHHHhhCc-HHHHHHHHHHHHHHHHh
Confidence            2       66677777777 78899999999888775

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.64  E-value=0.24  Score=49.69  Aligned_cols=188  Identities=14%  Similarity=0.075  Sum_probs=129.7

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  241 (368)
                      .+.+..-+.+++..-+..|+..+..+..... ........|.+-.++.....+.+..+...++.+|..++..-.......
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            3455555666777788888888888776543 111111223455566666577788999999999999998765554555


Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HH
Q 017651          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQ  320 (368)
Q Consensus       242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~  320 (368)
                      ..+.+|.+++-+...-..++..+..++-.++....-       ....+.+...+++.++.++..+...+.......+ ..
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            577888999888877777777666666555532111       1246778888999999999998888888776554 11


Q ss_pred             HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ...-.-.+.++.++....+. +.+||+.|..+++-+..
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            11112236788888888888 89999999998887765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.64  E-value=0.35  Score=45.73  Aligned_cols=71  Identities=21%  Similarity=0.206  Sum_probs=52.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      .|.|-..|++.- ..+..++++++..++..+  ....+++ ..+..|-.+|.++....+-.|+++|..|+...|.
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~  336 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ  336 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence            344445555554 689999999999988754  2222332 3577888899999999999999999999987764

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.57  E-value=0.86  Score=42.54  Aligned_cols=258  Identities=12%  Similarity=0.121  Sum_probs=145.5

Q ss_pred             HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-
Q 017651           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-  171 (368)
Q Consensus        93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-  171 (368)
                      .+...|..++......+....++..++..|+.++.++| +.-|.....+|.++-......+..+.. .+...|.+++.. 
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~  186 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET  186 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence            34445555554322222344667778999999999999 999999999999988766666665554 456677777764 


Q ss_pred             CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHH
Q 017651          172 PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALA  250 (368)
Q Consensus       172 ~~~~v~~~a~~~L~nla~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~  250 (368)
                      ....-...++..++.+..+-. ..++.-... ....++.+.....-.........++..++..+|..    ...++..|+
T Consensus       187 ~~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~ll  261 (409)
T PF01603_consen  187 ERHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLL  261 (409)
T ss_dssp             S--STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHH
Confidence            344556678888888876421 222211110 22334444433333444566777777777654321    112333333


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHc--
Q 017651          251 QLVHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--  327 (368)
Q Consensus       251 ~lL~~~d~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--  327 (368)
                      ..=-..++.=..-.+.-+..+...- +.....+ ..-++..+...+++++..|.+.|+..+.|     +.... ++..  
T Consensus       262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~  334 (409)
T PF01603_consen  262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNS  334 (409)
T ss_dssp             HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTH
T ss_pred             HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhCh
Confidence            3322334433344444555555432 2322222 22457777788889988888888876543     21222 3322  


Q ss_pred             -CChHHHHHhhCCC----CCccHHHHHHHHHHHHhcCCHHHh
Q 017651          328 -GALPYLLGLLTHS----HKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       328 -g~l~~l~~ll~~~----~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                       .++|.+...|...    =+..++..|.-++.-+...+++-.
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf  376 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLF  376 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence             3567777665431    156899999999998888776643

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.54  E-value=0.068  Score=51.43  Aligned_cols=128  Identities=18%  Similarity=0.153  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  298 (368)
                      +.+.++..+..|-+.+  .....+.+++..+++...++|..|+..+|..|..+.....+. +.-+-.++...+..-+.+.
T Consensus        62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhcc
Confidence            3344444444443332  233466788888888889999999999999999998743322 3333346677788888888


Q ss_pred             CcchHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          299 SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       299 ~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      .|.+|..|+.+|+.+=..+ ++..      .+...+..+++++.+++||+.|...|++
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDEEC------PVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            9999999999999986322 2221      3566778888877689999988655543

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.47  E-value=1.4  Score=38.29  Aligned_cols=218  Identities=15%  Similarity=0.155  Sum_probs=123.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017651          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVL  199 (368)
Q Consensus       122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~  199 (368)
                      |=..|.+++ +.+|..|+.+|+.+...-+...   ....-+..|+.++.+  .+......++.++..|............
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~   79 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV   79 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence            445677877 8999999999999877544221   222234555554433  3444555557777766633221111111


Q ss_pred             hcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChH
Q 017651          200 SQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       200 ~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~  277 (368)
                        ..+..+.+... +......+..+...+..+...........-..++..+++.+..+ ||+-...+...+..+...-+-
T Consensus        80 --~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   80 --KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             --HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence              12333333221 12244566677777777776532111222245677777777654 898888888888777644321


Q ss_pred             HHHHHHHcCChHHHHHhcC--------C-C-Cc--chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccH
Q 017651          278 KIQAVIEAGVCPRLVELLG--------H-P-SP--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI  345 (368)
Q Consensus       278 ~~~~~~~~~~~~~L~~lL~--------~-~-~~--~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v  345 (368)
                             ....+.+...+.        . + ++  -.+..--..|.+..+.++...     .-.+|.|++=|.++ .+.+
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~  224 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV  224 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence                   122222333321        1 1 22  234444455555555555332     25688999999998 8999


Q ss_pred             HHHHHHHHHHHhc
Q 017651          346 KKEACWTISNITA  358 (368)
Q Consensus       346 ~~~a~~~l~nl~~  358 (368)
                      |..+..+|..++.
T Consensus       225 K~D~L~tL~~c~~  237 (262)
T PF14500_consen  225 KLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.35  E-value=0.6  Score=45.22  Aligned_cols=210  Identities=16%  Similarity=0.135  Sum_probs=132.4

Q ss_pred             hhcCCCHHHHHHHHHHHHH--hhcCCCCCchHHHHhcCcHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651           82 GVWSDDSSLQLEATTQFRK--LLSIERSPPIEEVIQSGVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVV  156 (368)
Q Consensus        82 ~l~~~~~~~~~~a~~~l~~--l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~  156 (368)
                      .+...+++.-..|...++.  ++-++      .-+-+.+-|...+...+.   +++.++..|.-+|..+-.-+.+...  
T Consensus       861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~--  932 (1128)
T COG5098         861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS--  932 (1128)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH--
Confidence            3344445555555555542  22222      122234456666666551   3389999999999987653333222  


Q ss_pred             hhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651          157 IDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       157 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                         .-+|.|+..+. +++|.++..|+-.||.++.--....+.     .-..|.+.| .+.+..+++.+..++.+|.-.. 
T Consensus       933 ---ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag- 1002 (1128)
T COG5098         933 ---EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG- 1002 (1128)
T ss_pred             ---HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc-
Confidence               35799999887 799999999999999886422112121     345677777 7889999999999999988653 


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCC---cchHHHHHHHHHH
Q 017651          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVLIPALRTVGN  312 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~~a~~~l~n  312 (368)
                         ...+.|-++.+..+|.++|.++..-|-..+..++..+....     .|++..+ ..|+++.   ..-....++.+..
T Consensus      1003 ---q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y-----n~fidif-s~ls~~ae~g~e~fk~II~FLt~ 1073 (1128)
T COG5098        1003 ---QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY-----NGFIDIF-STLSSDAENGQEPFKLIIGFLTD 1073 (1128)
T ss_pred             ---ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh-----hhhHHHH-HHcCchhhcCCCcHHHHHHHHHH
Confidence               23446888999999999998888877777777776543332     2444333 3333221   1224455666666


Q ss_pred             hhcCCh
Q 017651          313 IVTGDD  318 (368)
Q Consensus       313 l~~~~~  318 (368)
                      +.....
T Consensus      1074 fI~ker 1079 (1128)
T COG5098        1074 FISKER 1079 (1128)
T ss_pred             HHHHHH
Confidence            665443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.33  E-value=0.25  Score=42.31  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh
Q 017651           90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL  169 (368)
Q Consensus        90 ~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL  169 (368)
                      ....|+..|.-++--. ++....+-....+..|+.+|.....+.++..++.+|..+.-+++.+...+-+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            4455667777776553 555556668889999999996655589999999999999988999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHhhC
Q 017651          170 ASP--SDDVREQAVWALGNVAG  189 (368)
Q Consensus       170 ~~~--~~~v~~~a~~~L~nla~  189 (368)
                      ++.  +.+++-.++..|.-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            874  46777777766655543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=1  Score=44.16  Aligned_cols=69  Identities=28%  Similarity=0.360  Sum_probs=52.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      .+.+=.++++.. ..+..+|+.++.++...++....     .++..|--++.++...+|-.|.++|..+|...|.
T Consensus       247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~  315 (865)
T KOG1078|consen  247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ  315 (865)
T ss_pred             HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence            444555666666 78999999999998875443222     2778888888999999999999999999876553

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.24  E-value=0.07  Score=51.34  Aligned_cols=183  Identities=14%  Similarity=0.170  Sum_probs=127.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+|.+++++.+.|..+|..-+..+-++.    ..-...+++..++|.+..-+.+.+ +.+|..++.++..++.--.+   
T Consensus       331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~---  402 (690)
T KOG1243|consen  331 IIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSK---  402 (690)
T ss_pred             hhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhch---
Confidence            4788888888888888888777777775    233456677888899988888888 89999999988888873221   


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ..+....+..|..+-.+++..++....-||+.|+.+. +..|..+    .+.++.+-+ .++-...+....+++...+..
T Consensus       403 ~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftral-kdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  403 RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRAL-KDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             hhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence            1344445666666666677888888888888888663 3333222    344555655 566666677888888776665


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      .+.  ......++|.+..+.-+++..++..+..++....
T Consensus       478 ~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  478 FDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             cch--hhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            332  2333467888888887788888877777665444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.20  E-value=0.11  Score=42.61  Aligned_cols=114  Identities=16%  Similarity=0.105  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCChhhHHHHH---------------hcCChHHHHHHhcc-----ccchhHHHHHHHHHHH
Q 017651          170 ASPSDDVREQAVWALGNVAGDSPRCRDLVL---------------SQGALIPLLAQLNE-----RAKLSMLRNATWTLSN  229 (368)
Q Consensus       170 ~~~~~~v~~~a~~~L~nla~~~~~~~~~i~---------------~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~  229 (368)
                      .++.......++.+|+|++.....++..+-               +...+..|+..+..     .....-...++.+|.|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            345566778899999999887654432221               12246777777755     1234556789999999


Q ss_pred             hhcCCCCCChhhh--hch--HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651          230 FCRGKPQPPFDQV--RPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (368)
Q Consensus       230 l~~~~~~~~~~~~--~~~--~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  284 (368)
                      +++.+....+...  ...  +..|+.++.+.+..-+.-++.+|.|+|...+.+ ..++.
T Consensus        85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~  142 (192)
T PF04063_consen   85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLS  142 (192)
T ss_pred             hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcC
Confidence            9988644333322  223  677888888887777888999999999875555 44444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.20  E-value=0.3  Score=44.72  Aligned_cols=209  Identities=16%  Similarity=0.150  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhH---------HHH
Q 017651          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCR---------DLV  198 (368)
Q Consensus       133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~---------~~i  198 (368)
                      .++..++.++...+....+....++. ..+.....+|.+     ..+.+...|+..|+.++... ..+         +.+
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~I  188 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQI  188 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHH
Confidence            45666666666665544443333332 344555555543     23567778888888776542 222         122


Q ss_pred             HhcCChHHHH-------HHh------------ccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----
Q 017651          199 LSQGALIPLL-------AQL------------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----  254 (368)
Q Consensus       199 ~~~~~i~~l~-------~~l------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-----  254 (368)
                      ++. ++-|.+       ++.            ..++...-++.|+..+..|+...+......   +...+..+|.     
T Consensus       189 ie~-VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i---~~~~i~~~l~~y~~~  264 (370)
T PF08506_consen  189 IEK-VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSI---LMQYIQQLLQQYASN  264 (370)
T ss_dssp             HHH-THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-
T ss_pred             HHH-hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhC
Confidence            221 222221       111            111223456678888889986532211111   2223334443     


Q ss_pred             -CCCHHHHHHHHHHHHHhhcCChH------------HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH
Q 017651          255 -SNDEEVLTDACWALSYLSDGTND------------KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  321 (368)
Q Consensus       255 -~~d~~v~~~a~~~l~~l~~~~~~------------~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~  321 (368)
                       +.++.-...|+..++.++.....            ....+....++|.|. -=.+..|-++..|++.+..+...-+.  
T Consensus       265 ~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--  341 (370)
T PF08506_consen  265 PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--  341 (370)
T ss_dssp             TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--
T ss_pred             CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--
Confidence             34677778888888888854321            234455555666665 11234577899999999998765432  


Q ss_pred             HHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       322 ~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      +.+.  ++++.++..|.++ +..|+-.|+.++
T Consensus       342 ~~l~--~~~~~l~~~L~~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  342 EQLL--QIFPLLVNHLQSS-SYVVHTYAAIAI  370 (370)
T ss_dssp             HHHH--HHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHhCCC-CcchhhhhhhhC
Confidence            1122  5799999999999 899999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.24  Score=46.65  Aligned_cols=149  Identities=22%  Similarity=0.325  Sum_probs=102.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651          124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG  202 (368)
Q Consensus       124 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~  202 (368)
                      +++.+.+ +-+|...+..++.--.++.       ..|++..|+.. .++.++++++.|.-+||-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            4444555 6777777776665444432       23678888887 7788999999999999999988754         


Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                      .++..+++|..+-+.-++.-.+.+|.-.|.+...      ...+..|-.+..+.+.-|+..|+-+++.+.....+....-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            4667788886777888888899999988877522      1245556666677778899999999998875433221111


Q ss_pred             HHcCChHHHHHhcC
Q 017651          283 IEAGVCPRLVELLG  296 (368)
Q Consensus       283 ~~~~~~~~L~~lL~  296 (368)
                      + .++.+.+.+++.
T Consensus       660 v-~~I~k~f~~vI~  672 (926)
T COG5116         660 V-KRIIKKFNRVIV  672 (926)
T ss_pred             H-HHHHHHHHHHHh
Confidence            1 245556666653

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.16  E-value=3.1  Score=39.66  Aligned_cols=249  Identities=15%  Similarity=0.124  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCH---HHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651           87 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP---QLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (368)
Q Consensus        87 ~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  163 (368)
                      ..+.|..+...+..++........  ..    =..+...+..+..+   ..+.+|+.+|+   .+..+.  ...+.++.+
T Consensus        42 p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT---~~Grdi--~~~~~~i~~  110 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALT---DNGRDI--DFFEYEIGP  110 (464)
T ss_pred             CHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHH---cCCcCc--hhcccchHH
Confidence            356777777777777665421011  00    12233444433223   45555555555   422222  235567777


Q ss_pred             HHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc
Q 017651          164 IFVKLLASP---------------------------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK  216 (368)
Q Consensus       164 ~L~~lL~~~---------------------------~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~  216 (368)
                      .|...|..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+.....+
T Consensus       111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~  190 (464)
T PF11864_consen  111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS  190 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence            777766421                           22233445555555554443221211122245555555444445


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651          217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (368)
Q Consensus       217 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~  296 (368)
                      ......++..+-.+......+ ......++..|......  .++...+-.++.||+......       ..+..|..+|.
T Consensus       191 ~~di~~~L~vldaii~y~~iP-~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~  260 (464)
T PF11864_consen  191 EDDIEACLSVLDAIITYGDIP-SESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILR  260 (464)
T ss_pred             HHHHHHHHHHHHHHHHcCcCC-hHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHc
Confidence            555566666666665543111 22223344444444222  255666667888888654333       23566777773


Q ss_pred             CC------CcchHHHHHHHHHHhhcCChHHHHHHHHc-C--ChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          297 HP------SPSVLIPALRTVGNIVTGDDFQTQCIITY-G--ALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       297 ~~------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~-g--~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      ++      +..+..-|+.+++.+..+..+....-+.. -  +++.+...++.+ ++.+--+....+.++.
T Consensus       261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence            22      34556688888988877663222222222 2  678888888877 7777778777777777

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.99  E-value=1  Score=41.45  Aligned_cols=135  Identities=14%  Similarity=0.192  Sum_probs=92.2

Q ss_pred             CcchHHHhh-CCChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-c--ccchhHHHH
Q 017651          150 SENTKVVID-HGAVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-E--RAKLSMLRN  222 (368)
Q Consensus       150 ~~~~~~~~~-~g~i~~L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-~--~~~~~~~~~  222 (368)
                      ......+++ ......|..++.+.   .+.+...|+.++..+..+.|..-..+.+.|.++.+++.+. .  .++.++...
T Consensus        95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~  174 (379)
T PF06025_consen   95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS  174 (379)
T ss_pred             ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence            333444555 44456666677653   3788899999999999999999999999999999999996 2  247888999


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH-------HHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651          223 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE-------EVLTDACWALSYLSDGTNDKIQAVIE  284 (368)
Q Consensus       223 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~-------~v~~~a~~~l~~l~~~~~~~~~~~~~  284 (368)
                      .-.+|..||-+..........+.++.+++++.+.+-       +.....-..+-.|..+.+.....+++
T Consensus       175 lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  175 LPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999886443333335778888887765431       22233333444555665555444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.92  E-value=2.3  Score=39.24  Aligned_cols=264  Identities=17%  Similarity=0.146  Sum_probs=138.3

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      .+.+.+.+..|...|.+.+....+.+-...+.. -++.|++++..          +.+..+..+|+.+|+.+... ++..
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~-k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~i~   80 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD-KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PEIV   80 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HHHH
Confidence            345556666776666666655433222222211 14445544431          11367889999999998873 4444


Q ss_pred             HHHhhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---c-ccchhHHHHHH
Q 017651          154 KVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E-RAKLSMLRNAT  224 (368)
Q Consensus       154 ~~~~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~-~~~~~~~~~a~  224 (368)
                      ..+-+.-   .+...+..+.+  .+..+....+|+|..=--.     ..++....+..++..+.   . -+...+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            3333321   34555666644  3457777788877653222     22334444555555442   2 34667888888


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh--cCCh-HHHH---HHHHc----C-----ChH
Q 017651          225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS--DGTN-DKIQ---AVIEA----G-----VCP  289 (368)
Q Consensus       225 ~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~--~~~~-~~~~---~~~~~----~-----~~~  289 (368)
                      .++.+|....|..-......-+|.++..+-+....++..|..++..+.  .++. ....   ...+.    +     +.+
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  235 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE  235 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence            999998877554433334456777777776777777766555544443  2221 1111   11111    2     233


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      .+..++.+.+.....+-+|..--+.-++......-.-...+...-..+.++ ++.+|.+|..+=..
T Consensus       236 ~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~  300 (372)
T PF12231_consen  236 RLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRR  300 (372)
T ss_pred             HHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            355555553444444444444433333331111011113455555667777 88888887554333

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.88  E-value=1.7  Score=42.28  Aligned_cols=254  Identities=14%  Similarity=0.131  Sum_probs=149.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      .+++.+.-.+.+.+..-...|.+.+.    ..-+.++..-++|.|+..+.-.+...-....+..++..... .+     .
T Consensus       258 ~fLeel~lks~~eK~~Ff~~L~~~l~----~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----y  327 (690)
T KOG1243|consen  258 LFLEELRLKSVEEKQKFFSGLIDRLD----NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----Y  327 (690)
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----c
Confidence            34444455555555555555554332    12234556666777777666554212222223333333332 22     4


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  237 (368)
                      ..+++|.|++++...+..+|-.-+.=+-+....   ....+++.-+++.+..-+ .+.+..++...+.++..|+..-...
T Consensus       328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh
Confidence            557899999999999988887666555554433   334566666788888888 8889999999999988887543211


Q ss_pred             ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC-hHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                        ..-...+..+..+-.+++..+++...-|++.++.......    ..++ ...+.+-+.++-...|..+++.+......
T Consensus       404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             --hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence              1112355555555455568899999989988886632221    2232 33444556666666777777776665544


Q ss_pred             ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       317 ~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      .+..   =+...++|.+..+.-++ +..+|..|--++.-
T Consensus       478 ~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~  512 (690)
T KOG1243|consen  478 FDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQ  512 (690)
T ss_pred             cchh---hhhhhccccccccccCc-ccchhhHHHHHHHH
Confidence            3311   12235677777766666 66666655555443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.72  E-value=0.18  Score=48.64  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=82.0

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 017651          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~  194 (368)
                      -.|++..+++...+++ ..||..++.+|..+... .......+-.+....+..-+.+..+.|+.+|+.+|+.+=++...-
T Consensus        83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            3556777777777777 79999999999999884 344455555577778888888888999999999999997543211


Q ss_pred             HHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (368)
Q Consensus       195 ~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  228 (368)
                           +..+...+..+++.++++++++.++..+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 23367788899988999999999877655

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.67  E-value=1.5  Score=40.19  Aligned_cols=242  Identities=17%  Similarity=0.182  Sum_probs=129.0

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCCc
Q 017651           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      +.+..++..+.++ ....+..++..|..-+.  .......+...|.+..+++.+.. ++++..-..++.++.-++.+ ..
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~--~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~   97 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA--DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GL   97 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhC--CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Cc
Confidence            4577888888843 35677777766665543  25667788899999999999954 44233444444444445543 33


Q ss_pred             chHHHhhCCChHHHHHhhC--C-------C-----------------------------------CHHHHHHHHHHHHHh
Q 017651          152 NTKVVIDHGAVPIFVKLLA--S-------P-----------------------------------SDDVREQAVWALGNV  187 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~--~-------~-----------------------------------~~~v~~~a~~~L~nl  187 (368)
                      ....+.+.+....++.++.  .       .                                   ...-+..|+.++-.+
T Consensus        98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l  177 (361)
T PF07814_consen   98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESL  177 (361)
T ss_pred             chhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHH
Confidence            3333334455555566555  0       0                                   001112233333333


Q ss_pred             h--------------CCChhhHHHHHhcCChHHHHHHhcc----c--------c---chhHHHHHHHHHHHhhcCCCCCC
Q 017651          188 A--------------GDSPRCRDLVLSQGALIPLLAQLNE----R--------A---KLSMLRNATWTLSNFCRGKPQPP  238 (368)
Q Consensus       188 a--------------~~~~~~~~~i~~~~~i~~l~~~l~~----~--------~---~~~~~~~a~~~L~~l~~~~~~~~  238 (368)
                      +              .....+++.+.+.|++..++..+..    .        .   +......++++|-+.+...+...
T Consensus       178 ~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq  257 (361)
T PF07814_consen  178 VRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQ  257 (361)
T ss_pred             HHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccch
Confidence            1              1112345566677788888888741    1        0   11234456677777665543222


Q ss_pred             hhhh---hchHHH-HHHhh---cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-------C-------C
Q 017651          239 FDQV---RPALPA-LAQLV---HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-------G-------H  297 (368)
Q Consensus       239 ~~~~---~~~~~~-L~~lL---~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-------~-------~  297 (368)
                      ....   .+.++. +..++   ......+...++..+.|++.+++...+.+...++...+..+.       .       .
T Consensus       258 ~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~  337 (361)
T PF07814_consen  258 SYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEE  337 (361)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccccc
Confidence            2111   222322 22222   222355678899999999988866666655553333222111       1       0


Q ss_pred             CCcchHHHHHHHHHHhhcCCh
Q 017651          298 PSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       298 ~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      ..-+...-+++++-|++..++
T Consensus       338 ~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  338 SSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             ccchHHHHHHHhHHHheeeCc
Confidence            123455667777777776554

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.59  E-value=0.36  Score=39.66  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChHHHHHHHH----------------cCChHHHHHhcCC------CCcchHHHHHHHHHH
Q 017651          255 SNDEEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLGH------PSPSVLIPALRTVGN  312 (368)
Q Consensus       255 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~L~~lL~~------~~~~v~~~a~~~l~n  312 (368)
                      .++......+|..|+|++...... ..+++                ...+..|+..+..      ....-......++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            344556677888888888764433 22222                1246666766633      234556788899999


Q ss_pred             hhcCChHHHHHHHHc--CC--hHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          313 IVTGDDFQTQCIITY--GA--LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       313 l~~~~~~~~~~~~~~--g~--l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      ++... +.++.+++.  +.  +..|+..+++. +..-|+.++.+|-|+|.....|
T Consensus        85 lS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H  137 (192)
T PF04063_consen   85 LSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH  137 (192)
T ss_pred             hcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH
Confidence            99754 477777765  34  78888888888 8888899999999999876655

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=0.49  Score=45.79  Aligned_cols=148  Identities=16%  Similarity=0.130  Sum_probs=99.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCCcc----hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 017651          120 PRFVEFLMREDYPQLQFEAAWALTNIAS-GTSEN----TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (368)
Q Consensus       120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~----~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~  194 (368)
                      |.|.+-|+.++ ..+|..|+..+.+..- ..++.    .+.+++ .-...+..+|.++.+.++..|..-++.+...--+.
T Consensus       177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            33445555667 7999999999999765 22333    233443 23677888999999999999988888776432111


Q ss_pred             H--HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          195 R--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       195 ~--~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      -  ..+.+  .+..++.-+..+...+++......|..+..++  ......+.++|.+-..|+++.+.|+..+...|..+-
T Consensus       255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            0  11111  34445555555667788888888888888763  233344567888888888888999998888887764


Q ss_pred             c
Q 017651          273 D  273 (368)
Q Consensus       273 ~  273 (368)
                      .
T Consensus       331 ~  331 (1005)
T KOG1949|consen  331 A  331 (1005)
T ss_pred             h
Confidence            3

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.34  E-value=0.38  Score=34.31  Aligned_cols=72  Identities=19%  Similarity=0.201  Sum_probs=57.9

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                      +...+..+ .++.+.++..++..|..|...+. ........++..+...|.++|+.|--.|+.+++.|+...++
T Consensus         5 ~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            34455566 67788899999999999998865 23334467888888999999999999999999999977655

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.32  E-value=3.5  Score=43.77  Aligned_cols=141  Identities=13%  Similarity=0.125  Sum_probs=94.4

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      +++..++..|..+. +.+|..|++||.++...++...   .....-..+..-+.+.+..|++.|+..+|...-..++.  
T Consensus       816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~--  889 (1692)
T KOG1020|consen  816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL--  889 (1692)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH--
Confidence            45777888888777 8999999999999998554321   11122234445666778899999999999876555443  


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---CCCHHHHHHHHHHHHHhh
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLS  272 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~---~~d~~v~~~a~~~l~~l~  272 (368)
                       +.+  ....+..-+ .++...|+..+...+..+|...|.-.     .....+.++|.   ++...|+.-++.++..+=
T Consensus       890 -~~q--yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  890 -IFQ--YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             -HHH--HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence             222  345566666 67788999999999999998754322     23334445543   222337777777776663

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.23  E-value=1.5  Score=41.33  Aligned_cols=159  Identities=14%  Similarity=0.139  Sum_probs=111.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCC---HHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~---~~v~~~a~~~L~~l~~~~~~  151 (368)
                      ....+.+.+.+++...+..|+..+..+ |.+ .....+++...++..|.+++.+++.   .++...++.++..+-.+..-
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL-SLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc-ccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            356788889999999999999988877 332 5667889999999999999988752   34555555666555443221


Q ss_pred             chHHHhhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          152 NTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      ..+ .+....|.....+.+  -.+..+-..|+..|-++...++..+..+.+.--+..++..+ +..+..++..+...+..
T Consensus       162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            111 111222333333332  24566778899999999888877788888888899999999 77788888888888888


Q ss_pred             hhcCCCCC
Q 017651          230 FCRGKPQP  237 (368)
Q Consensus       230 l~~~~~~~  237 (368)
                      +....|..
T Consensus       240 l~~~a~~~  247 (713)
T KOG2999|consen  240 LFRKAPDD  247 (713)
T ss_pred             HHhhCChH
Confidence            88765443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.20  E-value=0.41  Score=44.36  Aligned_cols=143  Identities=20%  Similarity=0.165  Sum_probs=89.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh-hhchHH
Q 017651          170 ASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ-VRPALP  247 (368)
Q Consensus       170 ~~~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~  247 (368)
                      .+++..++..|+..|+|.+...|. ++...-  -.+..++.-|.++.+.+|+-.+..+|..+........... .-++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~--~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT--TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            357889999999999999988543 322221  1466677767566688999999999988876543322221 123344


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHH--cCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          248 ALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIE--AGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~--~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .+..++.+.+++++..+...++.|+.... .....+.+  .+-...++-.+.++++.+ ..||+.....+.
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~  415 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY  415 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence            56677788899999999998888874321 11122222  122333444455666643 456666666554

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=3.5  Score=40.59  Aligned_cols=234  Identities=14%  Similarity=0.124  Sum_probs=134.2

Q ss_pred             cCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017651          116 SGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN  186 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  186 (368)
                      .|+++.++..|...       +++.-.+-|++.++++.+  .-..-...+.+.-+++.++..++++.--++..+|..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            57889999999421       234556677788888776  334444556666677888888899888999999999999


Q ss_pred             hhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh----hchHHHHHHhhcCCCHHHHH
Q 017651          187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV----RPALPALAQLVHSNDEEVLT  262 (368)
Q Consensus       187 la~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~L~~lL~~~d~~v~~  262 (368)
                      +..+-   .+..+-..+.+.....+ ++.+..++..|+-++.-+..+.  ......    .+.++.|+.+-+.-+.++..
T Consensus       487 ~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         487 IEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence            95443   33333334677777888 5578888889999999888775  222222    23333333333333455555


Q ss_pred             HHHHHHH-HhhcC----ChHHHHHHHHcCChHHHHHhcCCC------CcchHHHHHHHHHHhhc------CChHHHHHHH
Q 017651          263 DACWALS-YLSDG----TNDKIQAVIEAGVCPRLVELLGHP------SPSVLIPALRTVGNIVT------GDDFQTQCII  325 (368)
Q Consensus       263 ~a~~~l~-~l~~~----~~~~~~~~~~~~~~~~L~~lL~~~------~~~v~~~a~~~l~nl~~------~~~~~~~~~~  325 (368)
                      .++..+. +.+..    .++....+++ .+++....++..+      ..+-+..|.++|..+.+      ..+...+ -+
T Consensus       561 ~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~l  638 (970)
T COG5656         561 MVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YL  638 (970)
T ss_pred             HHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HH
Confidence            5555433 33322    1122111111 2333333444222      12334555555554432      1222222 22


Q ss_pred             HcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       326 ~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .....|.+--+|.+. ..++-.+|+-.+-+.+-
T Consensus       639 e~slypvi~Filkn~-i~dfy~Ea~dildg~tf  670 (970)
T COG5656         639 EVSLYPVISFILKNE-ISDFYQEALDILDGYTF  670 (970)
T ss_pred             HHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhH
Confidence            335666666667776 66777777777666553

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=0.22  Score=43.38  Aligned_cols=144  Identities=17%  Similarity=0.194  Sum_probs=93.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ  241 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  241 (368)
                      +...+..|.+++.+....++..+..|+...++.....+.. .+..+++-+ ++....+-+.+|.++..+...........
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777778888888888888876655433333322 456666666 67778899999999999987753333322


Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      ....+-.|..--..++.-|+.+|-.+|..++.+....       -+++.|...+.+.++.++..++.+..+..
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2222222221112345678999999999888664333       24677777788888888877777666554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.07  E-value=2.8  Score=34.39  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ++.+++...+++...+..|+..+.-++...=-.|..      ++|.++.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            678888888999999999999999887654233333      5899999999988 999999999999998855544433


Q ss_pred             HhhCCChHHHHHhhC----CCCHHH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-------cchhHHH
Q 017651          156 VIDHGAVPIFVKLLA----SPSDDV---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-------AKLSMLR  221 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~----~~~~~v---~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-------~~~~~~~  221 (368)
                      -...| +..-..+-.    +.....   ....+..+..+...+...|..+     +..+++.+...       ....-..
T Consensus        83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~  156 (187)
T PF12830_consen   83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD  156 (187)
T ss_pred             HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence            33333 333222221    111111   4455666667776555566554     55566666332       1344456


Q ss_pred             HHHHHHHHhhcCC
Q 017651          222 NATWTLSNFCRGK  234 (368)
Q Consensus       222 ~a~~~L~~l~~~~  234 (368)
                      .++++..||+.-+
T Consensus       157 ~~~Fla~nLA~l~  169 (187)
T PF12830_consen  157 FLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHhcCC
Confidence            6777777877654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.06  E-value=0.28  Score=40.25  Aligned_cols=109  Identities=9%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHH-HhcCCCcchHHHhhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhh
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVA  188 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nla  188 (368)
                      ...+++.+.......   ..+.-|.. +-..+......+++.||+..|+.+|..         .+..+...++.||-.|.
T Consensus        68 p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   68 PEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            455777776654221   22222222 222334677888889999999998863         44578889999999998


Q ss_pred             CCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          189 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       189 ~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      .........+...+++..|...| .+++..++..++..|+.+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            77655544555567888888888 7888999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.97  E-value=0.35  Score=50.71  Aligned_cols=131  Identities=17%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCc
Q 017651          221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  300 (368)
Q Consensus       221 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  300 (368)
                      ..+.|+...++...+.  .....+.+..++..|..+...++..|+.||+.+...++...   ....+-..+..-+.+.+.
T Consensus       795 ~~a~li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchh
Confidence            3455555555544321  11224567778888888889999999999999998765432   112233344555666678


Q ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       301 ~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      .||+.|+..+|..+...++....     ....+..-+.++ .-.|||.+...+..+|..+|+
T Consensus       870 sVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd  925 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPD  925 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC
Confidence            89999999999888776655442     344566656666 678999999999988876654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.96  E-value=2  Score=42.00  Aligned_cols=127  Identities=19%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQA  281 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~  281 (368)
                      +++.|...+ .+.+..++..++..+..++..-+  .......++|.+-.+. ++.+..++.+++-|++.++..    .+ 
T Consensus       390 IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD-  461 (700)
T KOG2137|consen  390 ILPLLYRSL-EDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LD-  461 (700)
T ss_pred             HHHHHHHHh-cCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HH-
Confidence            556666666 77788999999999998886533  1122245777766653 566789999999999998822    12 


Q ss_pred             HHHcCChHHHHHhc---CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651          282 VIEAGVCPRLVELL---GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       282 ~~~~~~~~~L~~lL---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                        ...+++.+..++   +..++.+....+++..++....... ..++.+.++|.++.+...+
T Consensus       462 --~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  462 --KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             --HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence              123344444444   5678888888888888887655433 4466668889888887766

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.85  E-value=1.7  Score=42.74  Aligned_cols=235  Identities=17%  Similarity=0.179  Sum_probs=123.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhc-CCCCCchHHHHhcC---cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLS-IERSPPIEEVIQSG---VVPRFVEFLMREDYPQLQFEAAWALTNIASGTS  150 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s-~~~~~~~~~~i~~g---~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~  150 (368)
                      .+-.|++.+..-+.+........+.. .+ .......+.+...|   .+..+.+.+.+..-+.  .+|+.++..+...-.
T Consensus       312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~  388 (574)
T smart00638      312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP--LEAAQLLAVLPHTAR  388 (574)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhh
Confidence            35566666665555444444433332 10 00011123333344   3455566666544211  233333333322111


Q ss_pred             cchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhcc---ccchhH
Q 017651          151 ENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNE---RAKLSM  219 (368)
Q Consensus       151 ~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~~  219 (368)
                      .-..     ..+..+..++.+    +...++..|+-+++++..    +.+.+...+. ...++.+...|..   ..+..-
T Consensus       389 ~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~  462 (574)
T smart00638      389 YPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEE  462 (574)
T ss_pred             cCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchh
Confidence            1111     245666777765    356788888888888863    2221111111 2256667666633   234555


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcC
Q 017651          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-S--NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG  296 (368)
Q Consensus       220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~--~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~  296 (368)
                      +..++.+|+|+...          ..++.+..++. .  .+..++..|+|+|..++...+...        -+.+++++.
T Consensus       463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~  524 (574)
T smart00638      463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYL  524 (574)
T ss_pred             eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHc
Confidence            56678888887754          35566666665 2  247899999999999986555442        345566653


Q ss_pred             C--CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651          297 H--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK  346 (368)
Q Consensus       297 ~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~  346 (368)
                      +  .++++|..|+.+|-..-   |..       ..+..+...+..+.+..|+
T Consensus       525 n~~e~~EvRiaA~~~lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~  566 (574)
T smart00638      525 NRAEPPEVRMAAVLVLMETK---PSV-------ALLQRIAELLNKEPNLQVA  566 (574)
T ss_pred             CCCCChHHHHHHHHHHHhcC---CCH-------HHHHHHHHHHhhcCcHHHH
Confidence            3  45788888876655431   211       1245566666555344443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=5.8  Score=39.15  Aligned_cols=260  Identities=14%  Similarity=0.094  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHhhcC-CCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651           90 LQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (368)
Q Consensus        90 ~~~~a~~~l~~l~s~-~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  168 (368)
                      ...-|++.+..+.+. ..+.+...+.+.=+++.++..++++. --++..||..+..+..+   .....+-..+.+....+
T Consensus       432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is~~eeD---fkd~~ill~aye~t~nc  507 (970)
T COG5656         432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFISTIEED---FKDNGILLEAYENTHNC  507 (970)
T ss_pred             HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHH
Confidence            344455666655440 12444555555556788888888877 68999999999999543   33333333467777888


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh-c--cccchhHHHHHHHHHHH-hhcCCCCCChhhhhc
Q 017651          169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL-N--ERAKLSMLRNATWTLSN-FCRGKPQPPFDQVRP  244 (368)
Q Consensus       169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l-~--~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~  244 (368)
                      |++.+-.++-.|+-||.-+..+. +..+.+..  .+|..++.| .  +.-+.++...+...+.. ++..-..-.......
T Consensus       508 l~nn~lpv~ieAalAlq~fi~~~-q~h~k~sa--hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~  584 (970)
T COG5656         508 LKNNHLPVMIEAALALQFFIFNE-QSHEKFSA--HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGS  584 (970)
T ss_pred             HhcCCcchhhhHHHHHHHHHhch-hhhHHHHh--hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHH
Confidence            88888889999999998888765 34344443  244444332 1  23345555544443332 222211111122223


Q ss_pred             hHHHHH----HhhcCC-C-----HHHHHHHHHHHHHhhc------CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651          245 ALPALA----QLVHSN-D-----EEVLTDACWALSYLSD------GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  308 (368)
Q Consensus       245 ~~~~L~----~lL~~~-d-----~~v~~~a~~~l~~l~~------~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~  308 (368)
                      +....+    .++..+ |     .+=+..|.+.|.-+..      ..++.... ......|.+--.|++.-.+.-..|+.
T Consensus       585 Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~i~dfy~Ea~d  663 (970)
T COG5656         585 LVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNEISDFYQEALD  663 (970)
T ss_pred             HHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            333332    333222 1     1223344444443321      12222222 22244555555566666777788888


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-C
Q 017651          309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-G  359 (368)
Q Consensus       309 ~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~  359 (368)
                      ++-+.+-...+..  -+.-|+.+.+..++.++....--.+++-++.|+.- |
T Consensus       664 ildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG  713 (970)
T COG5656         664 ILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG  713 (970)
T ss_pred             HHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence            8877664333222  12227778888888777323677889999999875 5

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.61  E-value=0.31  Score=34.71  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      +...+..+.++.+.+|..++..|..++...+  ....-..+++..+...|+++ ++.|--.|+-+++.++...|+.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH
Confidence            5567778889999999999999999998766  12122347788899999999 9999999999999999876663

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.56  E-value=0.56  Score=45.59  Aligned_cols=136  Identities=18%  Similarity=0.130  Sum_probs=95.0

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  237 (368)
                      ...++|.|..-+++.+..+++.++..+...+..-+   -.++..-++|.+..+..+..+..++.+++-|+..+.+.-   
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l---  460 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL---  460 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence            34578888888889999999999999999985432   133444467778777667788999999999999988331   


Q ss_pred             ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCc
Q 017651          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP  300 (368)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  300 (368)
                      +...+...+..+.+.....|+.+..-...+...+.....+. ..++...++|.++.+...+.-
T Consensus       461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence            11122234445555567788999888888887777543332 344556788888888766543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.50  E-value=6.6  Score=36.77  Aligned_cols=258  Identities=13%  Similarity=0.068  Sum_probs=134.9

Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC--cchHHHhhC
Q 017651           82 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--ENTKVVIDH  159 (368)
Q Consensus        82 ~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~  159 (368)
                      ...+++...+..|++.|.+.+++. +...... ..-.+..++.-|-++.+.+|+.+++.+|+.+...-.  +....++  
T Consensus       266 ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--  341 (533)
T KOG2032|consen  266 KATDPSAKSRGMACRGLGNTASGA-PDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--  341 (533)
T ss_pred             hccCchhHHHHHHHHHHHHHhccC-cHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--
Confidence            334566778889999999998863 2112111 222355566656555558999999999999876311  1111111  


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHh--cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLS--QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  236 (368)
                      .+.-.+..+..+.+++++..+..+++.|+.-.. ..++.+.+  .+...+++-.| +++++.+ ..||......|.  |+
T Consensus       342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~d~~p~v-a~ACr~~~~~c~--p~  417 (533)
T KOG2032|consen  342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-QDPNPYV-ARACRSELRTCY--PN  417 (533)
T ss_pred             hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-CCCChHH-HHHHHHHHHhcC--ch
Confidence            233445557778899999999888888762110 12222221  12344555555 5555544 345555555553  22


Q ss_pred             CChhhhhchHHHHHHhhcCCCHHH-HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          237 PPFDQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~~~d~~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .........++...+..   -+.. .-+.-|++ .+....++....+     .....-++++.-+.++..+....++..-
T Consensus       418 l~rke~~~~~q~~ld~~---~~~~q~Fyn~~c~-~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aavl~t~~~vd  488 (533)
T KOG2032|consen  418 LVRKELYHLFQESLDTD---MARFQAFYNQWCI-QLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAAVLKTTRSVD  488 (533)
T ss_pred             hHHHHHHHHHhhhhHHh---HHHHHHHHHHHHH-HHhhhCHHHHHHH-----HHhchhheecchHHHHHHHHHHHHHHHH
Confidence            22222233333221110   0111 01122221 2222223332222     1223334455556788888888887765


Q ss_pred             CChHHHHHHHHc-CChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          316 GDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       316 ~~~~~~~~~~~~-g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      .-........+. -+...+..+..++ -+++++.|..++.-+.
T Consensus       489 ~l~~~~c~~~d~~qL~~~ls~l~~dp-~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  489 SLVRAACSSADGLQLRSSLSTLWRDP-RPEVTDSARKALDLLS  530 (533)
T ss_pred             HhHHHHHHHhhHHHHHHHHHHHccCC-CchhHHHHHHHhhhHh
Confidence            433222222221 2334455555666 8999999988887654

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.43  E-value=4.5  Score=44.75  Aligned_cols=266  Identities=14%  Similarity=0.093  Sum_probs=142.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCC--CCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC--
Q 017651           85 SDDSSLQLEATTQFRKLLSIE--RSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--  160 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--  160 (368)
                      +.+..+...|+..|+++...-  ..+....-....++.+|..++.+..+.+++...+.|+.++.....    .-+..|  
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcCcH
Confidence            345678888888888775421  111111123445788888888776668999999999999876322    223334  


Q ss_pred             -ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh----
Q 017651          161 -AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF----  230 (368)
Q Consensus       161 -~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~-----~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l----  230 (368)
                       ++..|-....++++.+.+.|..++..|..+.-..     .+.+.+  .+..+...-.+..+.++--.++..|+++    
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence             2233333334677899999999998887542110     011111  3344444443333333333444444433    


Q ss_pred             hcCCC-----------------------C------CChhhhhchHHH---HHHhhcCCCHHHHHHHHHHHHHhhcCC---
Q 017651          231 CRGKP-----------------------Q------PPFDQVRPALPA---LAQLVHSNDEEVLTDACWALSYLSDGT---  275 (368)
Q Consensus       231 ~~~~~-----------------------~------~~~~~~~~~~~~---L~~lL~~~d~~v~~~a~~~l~~l~~~~---  275 (368)
                      +.+.-                       .      .........+|.   |.++..++.++|+..|+.+|..+....   
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence            11100                       0      000001223343   444456678999999999998776431   


Q ss_pred             --hHHHHHHHHcCChHHHHHhcCCC------------------C--------cchHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651          276 --NDKIQAVIEAGVCPRLVELLGHP------------------S--------PSVLIPALRTVGNIVTGDDFQTQCIITY  327 (368)
Q Consensus       276 --~~~~~~~~~~~~~~~L~~lL~~~------------------~--------~~v~~~a~~~l~nl~~~~~~~~~~~~~~  327 (368)
                        ++.-..++. +++-.++..+.+.                  +        .+....|++.+.++....-+....+++ 
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence              222222333 3444444333210                  0        022333444444443322223333333 


Q ss_pred             CChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          328 GALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       328 g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      +++..|..++..+ +..+.+-.+-+|.++...
T Consensus      1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076       1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHH
Confidence            6677777777777 888999999999998863

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=93.40  E-value=0.75  Score=51.45  Aligned_cols=268  Identities=14%  Similarity=0.169  Sum_probs=141.6

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCC--CchHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERS--PPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH  159 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~--~~~~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  159 (368)
                      ...+++.+..+...+..++.....  ......+  ...++..+..+-....++.++......+.      ...-......
T Consensus       491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~  564 (2341)
T KOG0891|consen  491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP  564 (2341)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence            345667777776666655543211  0000000  11222333332222222555554444333      2222334445


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF  239 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  239 (368)
                      +.+..+...+.++.-.+++.+...+++++..+|.+.-..+....+..+..+. .+.-..+......-+..+....+.-..
T Consensus       565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~i~  643 (2341)
T KOG0891|consen  565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVLIS  643 (2341)
T ss_pred             hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence            5667777778888889999999999999987764322111111111111111 111111111111111111111111111


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCCh
Q 017651          240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       240 ~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      ..+.+.+..++..++..++.+...+..+++.||..........++ ..++.+..-+ ...+..-+..++++++++.+...
T Consensus       644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~  722 (2341)
T KOG0891|consen  644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG  722 (2341)
T ss_pred             hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence            223445566777778888888899999999998654433333334 3444444444 44567778999999999987655


Q ss_pred             HHHHHHHHc-CChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          319 FQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       319 ~~~~~~~~~-g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      ...+...+. -++..+...+.......++.++...++++.+-
T Consensus       723 ~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  723 YVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             eEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            433322222 45677777777776778899999998877653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=93.27  E-value=1.2  Score=38.86  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--Ch
Q 017651          133 QLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLA----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--AL  204 (368)
Q Consensus       133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--~i  204 (368)
                      +-+.-++-.+.-++.+ +.....+...+  ....+..++.    +..+..+-.++++++|+....+ .+..+..+.  .+
T Consensus        78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence            3466666666655553 33333333322  2344444433    2467888899999999998754 556666542  23


Q ss_pred             HHHHHHhcccc---chhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-C-CCHHHHHHHHHHHHHhhcCChH
Q 017651          205 IPLLAQLNERA---KLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH-S-NDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       205 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~-~-~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                      ...+..+....   +..++..++..+.|++-..  ..........++..+.+.+. . .|+++...++-++|++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            33333332222   7888889999999987543  11122222345666666443 2 5899999999999999976655


Q ss_pred             HH
Q 017651          278 KI  279 (368)
Q Consensus       278 ~~  279 (368)
                      ..
T Consensus       236 ~~  237 (268)
T PF08324_consen  236 AK  237 (268)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.08  E-value=7.2  Score=38.80  Aligned_cols=277  Identities=12%  Similarity=0.084  Sum_probs=152.4

Q ss_pred             cHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      ....++++++.. |.-++..+++.++-.+..- +-..+.+.  -.++...+.+++..-..-+-+...+..|+.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            356677777765 6778888888888776542 22222221  1334444555665433246677777777776654333


Q ss_pred             chHHHhhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhcc---ccchh
Q 017651          152 NTKVVIDHGAVPIFVKLLA------SPSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNE---RAKLS  218 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~~---~~~~~  218 (368)
                      .....     ...+++++.      .+.+-++...+.+|.|+..    .++.+..      ++-+.+++-..   .+..-
T Consensus       606 ~I~P~-----~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~  674 (978)
T KOG1993|consen  606 HIAPY-----ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVY  674 (978)
T ss_pred             hhhHH-----HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceee
Confidence            32211     122222221      2456677777888888852    2222211      23333333211   11233


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  298 (368)
                      +.+.+...-.....+.+.-.. ....++|.+...+....+.++....-.=+|+.-.+... -.....|+++.+..++.+-
T Consensus       675 L~EDgmeLW~~~L~n~~~l~p-~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dv  752 (978)
T KOG1993|consen  675 LLEDGMELWLTTLMNSQKLTP-ELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDV  752 (978)
T ss_pred             hhhhHHHHHHHHHhcccccCH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHh
Confidence            444444333333333322222 22467888888886554444333322333444333332 2233458889999998766


Q ss_pred             CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651          299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQV  366 (368)
Q Consensus       299 ~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~i~~  366 (368)
                      ..+-....+.++..+...++ ........++++.+..-+.. ...|.+--.-..+++.+.--+|+-+..
T Consensus       753 r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ms  820 (978)
T KOG1993|consen  753 RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMS  820 (978)
T ss_pred             hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHH
Confidence            56666778888888877665 45556667888888765532 225677777777788877777766543

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.97  E-value=15  Score=39.30  Aligned_cols=79  Identities=19%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      |++|.|-.-|.+.+..+|..|...+|.+.+....... =-.......++.-+.+. +..+|.++.-...++...+++...
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7788888888889999999999999999876653322 00113455556666677 889999999999999887776654


Q ss_pred             h
Q 017651          366 V  366 (368)
Q Consensus       366 ~  366 (368)
                      +
T Consensus       337 ~  337 (1266)
T KOG1525|consen  337 A  337 (1266)
T ss_pred             H
Confidence            3

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.90  E-value=5  Score=38.13  Aligned_cols=154  Identities=15%  Similarity=0.157  Sum_probs=105.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc---hhHHHHHHHHHHHhhcCCCCCCh
Q 017651          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK---LSMLRNATWTLSNFCRGKPQPPF  239 (368)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~---~~~~~~a~~~L~~l~~~~~~~~~  239 (368)
                      ..+...+.+++..-+..++.-|..++.+. .+...++...++..|.+++.....   .++....+.+++.+-...- ...
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vsW  163 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VSW  163 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-eee
Confidence            44556666666666666888899998885 566778888899999999954433   4555555556555554421 111


Q ss_pred             hhh-hchHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          240 DQV-RPALPALAQLV--HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       240 ~~~-~~~~~~L~~lL--~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      ..+ ..++-....+.  +.-+..+...|+..+-++..+++...+.+.+.--+..|+.+|...+..++..|+..|..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            111 12332233332  233567788899999999988887777888888899999999888888888888888877654


Q ss_pred             Ch
Q 017651          317 DD  318 (368)
Q Consensus       317 ~~  318 (368)
                      .+
T Consensus       244 a~  245 (713)
T KOG2999|consen  244 AP  245 (713)
T ss_pred             CC
Confidence            43

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.87  E-value=0.75  Score=40.17  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=96.0

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 017651          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI  283 (368)
Q Consensus       204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~  283 (368)
                      +...+..| .+.+.......+..+..|+..-+..-...+..++..+++-+.+....|-..||.+++-+...-.+.+... 
T Consensus        90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~-  167 (334)
T KOG2933|consen   90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE-  167 (334)
T ss_pred             HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34445555 5666777777777777777664433334445677777777788888899999999999886654444432 


Q ss_pred             HcCChHHHHHhc-C---CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          284 EAGVCPRLVELL-G---HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       284 ~~~~~~~L~~lL-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                          +..++..| .   .++.-+++.|-.+|-.++..-..+       .+++.|+..+++. ++.++..++.+..++.-
T Consensus       168 ----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 ----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             ----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence                33344333 2   234457888988888887654322       3467788888888 89999999988887764

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.87  E-value=1.4  Score=35.77  Aligned_cols=140  Identities=18%  Similarity=0.212  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCh-hhh-----------hch-HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651          219 MLRNATWTLSNFCRGKPQPPF-DQV-----------RPA-LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA  285 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~-~~~-----------~~~-~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  285 (368)
                      ++..|+.+|..+++..+...+ ..-           .+. .+.+.-++.++++.++..|+.++..|.++........-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            455667777777766222211 110           111 2234445577889999999999999998765443333211


Q ss_pred             -------------------CChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhhCCCCCcc
Q 017651          286 -------------------GVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQC-IITYGALPYLLGLLTHSHKKS  344 (368)
Q Consensus       286 -------------------~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~-~~~~g~l~~l~~ll~~~~~~~  344 (368)
                                         ++-..|+..|. ..+..+....+.+++.++...+...-. =+-..++..+..++.+. +++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~  160 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPN  160 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCc
Confidence                               11233444443 346778889999999999888743321 01113445556677787 899


Q ss_pred             HHHHHHHHHHHHhcC
Q 017651          345 IKKEACWTISNITAG  359 (368)
Q Consensus       345 v~~~a~~~l~nl~~~  359 (368)
                      ++-.+..+++-+.+.
T Consensus       161 v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  161 VRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999888763

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=92.76  E-value=9.3  Score=36.42  Aligned_cols=244  Identities=14%  Similarity=0.116  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (368)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  168 (368)
                      ..+..|+..+...+...+-.++..+     -...-.++.....++.|..+...|..++.+...... ...    ..+...
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~   74 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD   74 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence            4566677777766654323233332     222234555554467888888888888875433211 111    122222


Q ss_pred             hC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc--------------------------cchhHHH
Q 017651          169 LA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--------------------------AKLSMLR  221 (368)
Q Consensus       169 L~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~--------------------------~~~~~~~  221 (368)
                      +. ...++-...-+.+|..|+.++...  ...+.+..+.+..-+...                          .+.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            33 233444455666677777666444  223445555555544211                          1233344


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcC
Q 017651          222 NATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLG  296 (368)
Q Consensus       222 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~  296 (368)
                      .....+.|+.... .......+.+++..++.+.. +.++.....++..+-.+...   +++.         ++.++..|.
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s---------l~~~i~vLC  223 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES---------LSPCIEVLC  223 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH---------HHHHHHHHh
Confidence            5555666666554 23333444556665555532 33444445555555444432   2222         223333331


Q ss_pred             --CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC--CC---CCccHHHHHHHHHHHHhcCC
Q 017651          297 --HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT--HS---HKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       297 --~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~--~~---~~~~v~~~a~~~l~nl~~~~  360 (368)
                        ........++-.++.||+...-.+       ..+..|..+|.  ++   .+..+-+.|...+..+..|.
T Consensus       224 si~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~  287 (464)
T PF11864_consen  224 SIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS  287 (464)
T ss_pred             hHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence              122367778888999998644322       13555777773  22   14566678888888887765

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.61  E-value=1.6  Score=42.44  Aligned_cols=133  Identities=15%  Similarity=0.095  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 017651          172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ  251 (368)
Q Consensus       172 ~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~  251 (368)
                      +++.++..|--+|..+..-+.++..   +  .+|.++..+.++++|.++.++.-.++.+.-....    .....-..|..
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~---e--hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~----~~de~t~yLyr  978 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS---E--HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT----TADEHTHYLYR  978 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH---H--HHHHHHHHHhhCCCcceeccceeeccccceehhh----hhHHHHHHHHH
Confidence            6788998888888887644433322   2  5899999998899999999998888766543211    11234456777


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651          252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       252 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      -|.+.+..|+..++.++.+|.-.+.-.     -.|-++.++..|.+++..+..-|-..+..++....
T Consensus       979 rL~De~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098         979 RLGDEDADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred             HhcchhhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence            888889999999999999988543211     24778899999999999998888888888887654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.57  E-value=9.1  Score=35.84  Aligned_cols=191  Identities=17%  Similarity=0.205  Sum_probs=112.3

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhcc------ccchhHHHHHHHHHHHhhcCC
Q 017651          164 IFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNE------RAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nla~~~~---~~~~~i~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .+..++...+++-+-.++.....++.+..   ..+..+.+.=+++-+-+++..      .++.-.+.-+...|..+|+.+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35566666777778888888888886542   234455665455555555532      123344455678888999987


Q ss_pred             CCCChhhhhchHHHHHHhhcCC-CHH------HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCc-chHHHH
Q 017651          235 PQPPFDQVRPALPALAQLVHSN-DEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP-SVLIPA  306 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~-d~~------v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~v~~~a  306 (368)
                      .-.....+-.-+|.|..++... |++      +..++..+|..++...... ..++..|.++.+.+.-.-++. .-..-+
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            6555666667889999888532 333      7888889998888875544 778889999999877543332 223334


Q ss_pred             HHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          307 LRTVGNIVTGDD---FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       307 ~~~l~nl~~~~~---~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +.++.-.+++.+   +....+..  ++..+..=+... +...|-+.|..|+.+..
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence            443333333221   11111111  122222222222 44566677777765544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.54  E-value=1.6  Score=43.67  Aligned_cols=154  Identities=19%  Similarity=0.230  Sum_probs=103.7

Q ss_pred             HHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH--HHHHHhccccch
Q 017651          141 ALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI--PLLAQLNERAKL  217 (368)
Q Consensus       141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~--~l~~~l~~~~~~  217 (368)
                      +|+++...+++....+++.|++..+...+.. .+.++...++..++|++...+ .++.......+.  .+-.++....+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            7788888899999999999999999999985 667899999999999996542 222222222222  333344344455


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhh------------------------h-hchHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 017651          218 SMLRNATWTLSNFCRGKPQPPFDQ------------------------V-RPALPALAQLVH-SNDEEVLTDACWALSYL  271 (368)
Q Consensus       218 ~~~~~a~~~L~~l~~~~~~~~~~~------------------------~-~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l  271 (368)
                      +.-..++..|+.+..+.+......                        . ..+.|.+..++. +..+..+..|+|++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            777788888887776532110000                        0 111121333333 33467788999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhc
Q 017651          272 SDGTNDKIQAVIEAGVCPRLVELL  295 (368)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~L~~lL  295 (368)
                      +...++....+.+.|+++.+...-
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~  676 (699)
T KOG3665|consen  653 LEQNKEYCKLVRESNGFELIENIR  676 (699)
T ss_pred             HHcChhhhhhhHhccchhhhhhcc
Confidence            998888777788888888877765

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.46  E-value=5.2  Score=32.81  Aligned_cols=151  Identities=15%  Similarity=0.130  Sum_probs=97.2

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA  281 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~  281 (368)
                      .++.++++. .+++..++..|+..+.-+.+.. -.|     ..++|.++.+..++++.++..|...+..+....++....
T Consensus         9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen    9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence            567778866 7888999999999999888754 111     258999999999999999999999999998776655554


Q ss_pred             HHHcCChHHHH--HhcCCCCc-ch---HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC-------CCccHHHH
Q 017651          282 VIEAGVCPRLV--ELLGHPSP-SV---LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-------HKKSIKKE  348 (368)
Q Consensus       282 ~~~~~~~~~L~--~lL~~~~~-~v---~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-------~~~~v~~~  348 (368)
                      -...|+-...-  ..+..+.. ..   ....+.-+..++.++...+..++.     .+...+...       ..+.-...
T Consensus        83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHHH
Confidence            44444322221  11222211 11   455666666777766656664443     344444332       13455677


Q ss_pred             HHHHHHHHhc---CCHHHh
Q 017651          349 ACWTISNITA---GNRDQI  364 (368)
Q Consensus       349 a~~~l~nl~~---~~~~~i  364 (368)
                      .+++.-|++.   .+.+.+
T Consensus       158 ~~Fla~nLA~l~y~~~~E~  176 (187)
T PF12830_consen  158 LLFLAENLATLPYQTQDEV  176 (187)
T ss_pred             HHHHHHHHhcCCCCChhHH
Confidence            8888888875   444443

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.26  E-value=2.6  Score=41.16  Aligned_cols=186  Identities=15%  Similarity=0.132  Sum_probs=109.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhC-CCh----hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CC
Q 017651          163 PIFVKLLASPSDDVREQAVWALGNVAG-DSP----RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ  236 (368)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nla~-~~~----~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  236 (368)
                      |.|.+-|+.++..++..|+..+.++.- .+|    +-.+.+++. -...+.++| .++-+.++..+..-++.+.... .-
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL-~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLL-EDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHH
Confidence            556667777999999999999999862 111    223445543 357778888 7777888777665555444322 11


Q ss_pred             CChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          237 PPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       237 ~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .....+..++..+..-+. ....+|+......|-++...+...  .+.+. +++.+-..|.+.+..+|.++...|..|-.
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch--hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            111122233333333333 334689999999999998775433  22222 34555556667788999999988888754


Q ss_pred             CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       316 ~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      .....   +++-=-++.++..|..+ +..+.+.-+..|.|.+
T Consensus       332 vra~~---f~~I~~~d~~l~~L~~d-~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  332 VRAAK---FWKICPMDHILVRLETD-SRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             hhhhh---hhccccHHHHHHHHhcc-ccHHHHHHHHHHHHhh
Confidence            33222   22222355556666665 4445544444444444

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=92.02  E-value=7.6  Score=33.74  Aligned_cols=214  Identities=20%  Similarity=0.158  Sum_probs=119.9

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCC--CCch-HHHH-----------hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 017651           80 VAGVWSDDSSLQLEATTQFRKLLSIER--SPPI-EEVI-----------QSGVVPRFVEFLMREDYPQLQFEAAWALTNI  145 (368)
Q Consensus        80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~--~~~~-~~~i-----------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l  145 (368)
                      +.+|.+..+..-..|+..+.++++.-+  .+.. +.+.           -.|+.+.+++=|.++.   .-..++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            445666666666677777776665421  1111 1111           1233444444455544   344455566665


Q ss_pred             hcCC-------CcchHHHhhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc
Q 017651          146 ASGT-------SENTKVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER  214 (368)
Q Consensus       146 ~~~~-------~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~  214 (368)
                      +...       ++.+-.+.-.+.+|.++.-+.+++    ......++..|+.+|....        ...+..++..+...
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            5421       112222222345677777777766    2445567788888884421        12344455444332


Q ss_pred             ---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 017651          215 ---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  291 (368)
Q Consensus       215 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  291 (368)
                         +..+....++..|..-..  |..    ....+-.+..+|...-+.++..++.+|..+...-+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--chh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence               234555555555554321  221    124666788888888899999999999999866433322  445678889


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhc
Q 017651          292 VELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .++|..+   ....|+.++-++..
T Consensus       234 lrlL~t~---~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  234 LRLLQTD---LWMEALEVLDEIVT  254 (262)
T ss_pred             HHHhCCc---cHHHHHHHHHHHHh
Confidence            9998654   45667777766654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=91.86  E-value=7.4  Score=33.24  Aligned_cols=197  Identities=15%  Similarity=0.123  Sum_probs=114.4

Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCC
Q 017651           82 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (368)
Q Consensus        82 ~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  161 (368)
                      .-+..++..+...+..|..++..+ +.....     ++..+..+...+. .+.+.-+...+..+...++...      +.
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~-~~~~~~~~rLl~~lw~~~~r~f------~~   75 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGS-LELRYVALRLLTLLWKANDRHF------PF   75 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCc-hhHHHHHHHHHHHHHHhCchHH------HH
Confidence            344677888889999999887654 122222     3666777777766 6667778888888887544322      23


Q ss_pred             hHHHHHh--h------C--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          162 VPIFVKL--L------A--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       162 i~~L~~l--L------~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      +..++..  +      .  +...+.......++..++...|..     -...++.+...|.++.++.++..++.++..||
T Consensus        76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            3333333  0      1  123444555567888888777651     11256777777755557778888999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhcCCCCc
Q 017651          232 RGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLGHPSP  300 (368)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~~~~L~~lL~~~~~  300 (368)
                      ... ..   ........+.+-+..+ .+.+....+..+..+..+.-+.. .......++..+-++..+.+.
T Consensus       151 ~~~-vv---d~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  151 EAE-VV---DFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHh-hc---cHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            542 11   1123444555555433 46666666666655554422221 112333455555555555543

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=91.85  E-value=4  Score=40.74  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=106.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .|..|+.+|.+.+......+-..+...+..++.+        -++..|+++.-..++    ..|+.+|..+-.  +..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            5889999999999888777777777776654221        136667776555442    344555554422  3212 


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                           ..+..|-.++..  +.-+-.++..|+.+....|..-..+.+...+..|+..|..+.+..+...|+.+|..|.=.-
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 233445555554  4567789999999998887777888999999999999988889999999999888877544


Q ss_pred             CCCChhhhhchHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLV  253 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL  253 (368)
                      |......+..++.+...++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            4333333344444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.50  E-value=8  Score=35.47  Aligned_cols=241  Identities=18%  Similarity=0.129  Sum_probs=124.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRD  196 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~nla~~~~~~~~  196 (368)
                      +..+++=+.+.....+|..++--|..-+. +++++..+...|.+..+++.+.+ ++..+...+ +.++.-++.+.+ .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            55566666644446788888888888777 58999999999999999998854 333243333 333444444443 222


Q ss_pred             HHHhcCChHHHHHHhc--cc-----------------------------------------cchhHHHHHHHHHHHhhcC
Q 017651          197 LVLSQGALIPLLAQLN--ER-----------------------------------------AKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~--~~-----------------------------------------~~~~~~~~a~~~L~~l~~~  233 (368)
                      .+...+....++.++.  ..                                         ...+-+.-+..++..+|..
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~  180 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS  180 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence            2223333333344443  00                                         0111122233444444311


Q ss_pred             C----------C--CC---ChhhhhchHHHHHHhhc----CC-------C-----HHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          234 K----------P--QP---PFDQVRPALPALAQLVH----SN-------D-----EEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       234 ~----------~--~~---~~~~~~~~~~~L~~lL~----~~-------d-----~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                      .          +  ..   ......|++..+++.+.    ..       +     ......++.+|-+.+..+.+....+
T Consensus       181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l  260 (361)
T PF07814_consen  181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL  260 (361)
T ss_pred             HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence            1          0  00   00011244666666653    11       1     1234446666666665544433333


Q ss_pred             HHc--CChHHHHHhc-C---CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-------hhCC------CCCc
Q 017651          283 IEA--GVCPRLVELL-G---HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-------LLTH------SHKK  343 (368)
Q Consensus       283 ~~~--~~~~~L~~lL-~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~-------ll~~------~~~~  343 (368)
                      +..  +.+..+...+ .   ..-+.+...+++.+.|++..++..+..+-..++...+..       ++.-      ....
T Consensus       261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  340 (361)
T PF07814_consen  261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF  340 (361)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence            332  3333333322 1   223445788999999999998766655544422222111       1110      1134


Q ss_pred             cHHHHHHHHHHHHhcCCH
Q 017651          344 SIKKEACWTISNITAGNR  361 (368)
Q Consensus       344 ~v~~~a~~~l~nl~~~~~  361 (368)
                      ++.--+..++.|++..+.
T Consensus       341 D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  341 DILILALGLLINLVEHSE  358 (361)
T ss_pred             hHHHHHHHhHHHheeeCc
Confidence            677788889999987543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=91.31  E-value=2.2  Score=37.63  Aligned_cols=138  Identities=13%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch-HHHhhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDHGAVPIFVK----LLA--------SPSDDVREQAVWAL  184 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L  184 (368)
                      ++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+    ++.        +++..+...+.-+|
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            5899999999988 9999999999999988433322 23566675544433    333        34566777777787


Q ss_pred             HHhhCC----ChhhHHHHHhcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC
Q 017651          185 GNVAGD----SPRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN  256 (368)
Q Consensus       185 ~nla~~----~~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~  256 (368)
                      ..++.-    ....+......-.-+.++.-+....   .+.+....+..+..+...-..........+++.+.+.+.+.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            777421    1111222111111222333332222   36666666666666665433333334456677777666544

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=91.26  E-value=11  Score=34.08  Aligned_cols=157  Identities=17%  Similarity=0.114  Sum_probs=107.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhhHHHHHh-cCC-hHHHHHHhccc---c-c--------hhHHHHHHHH
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAG-DSPRCRDLVLS-QGA-LIPLLAQLNER---A-K--------LSMLRNATWT  226 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~-~~~~~~~~i~~-~~~-i~~l~~~l~~~---~-~--------~~~~~~a~~~  226 (368)
                      +..+-..|.+....+...++..|..|+. ++......+.. .++ .+.+-+++...   . +        ++++...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7777888888888888899999999998 66555444443 333 33455555211   1 1        2788888777


Q ss_pred             HHHhhcCC-CCCChhhh--hchHHHHHHhhcCCCHHHHHHHHHHHHH-hhcCC---hHHHHHHHHcCChHHHHHhcCCCC
Q 017651          227 LSNFCRGK-PQPPFDQV--RPALPALAQLVHSNDEEVLTDACWALSY-LSDGT---NDKIQAVIEAGVCPRLVELLGHPS  299 (368)
Q Consensus       227 L~~l~~~~-~~~~~~~~--~~~~~~L~~lL~~~d~~v~~~a~~~l~~-l~~~~---~~~~~~~~~~~~~~~L~~lL~~~~  299 (368)
                      +..+.... +......+  .+.+..+.+.|..+++++....+.++.. +....   ......+.+...+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            66666654 22222222  5568888999999889999999999985 44332   233344566678888999777766


Q ss_pred             c----chHHHHHHHHHHhhcCCh
Q 017651          300 P----SVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       300 ~----~v~~~a~~~l~nl~~~~~  318 (368)
                      +    .+...+-..+..+|+...
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCC
Confidence            6    889999999999987543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.22  E-value=3.4  Score=39.55  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=78.9

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--h
Q 017651          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--P  192 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~--~  192 (368)
                      -.|++..+++.+.+++ ..+|..++.+|+.++. ...-.+..+.+|.+..|..-+.+..+.++.+|+.+|+.+-...  +
T Consensus        89 V~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne  166 (885)
T COG5218          89 VAGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE  166 (885)
T ss_pred             HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence            3566777888888888 7999999999999887 3455566677788888888888888999999999999886433  3


Q ss_pred             hhHHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017651          193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT  226 (368)
Q Consensus       193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~  226 (368)
                      +.       .....+...++.+++.++++.++.-
T Consensus       167 en-------~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         167 EN-------RIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             HH-------HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            22       1345677778778888888876543

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.03  E-value=1  Score=35.10  Aligned_cols=74  Identities=11%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..+.+.|+++++..+..|+..|..++..........+...+++..|+.++....++.|+..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            56888899999999999999999998887654334445677888999999999854448999999999888775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=90.66  E-value=11  Score=32.87  Aligned_cols=222  Identities=14%  Similarity=0.065  Sum_probs=127.7

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC--CCCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           80 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--EDYPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      =..|.++|+..|..|+..|..++..-....    ....-+..|+.++.+  .| ......++.++..+..... ..... 
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~-~~~~~-   77 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKMKN-FSPES-   77 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC-CChhh-
Confidence            346778999999999999999887531111    222225556655543  23 3445555677766664222 11111 


Q ss_pred             hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--hcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          158 DHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVL--SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       158 ~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~~i~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ...++..+.+-..  +-....|..+...+..+..+..   ..+.  ..+++..+++.+....|+.-.-.+...+..+...
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~  154 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE  154 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            0112233332221  2235667788888888876532   2232  2346888888887777998888888888887766


Q ss_pred             CCCCChhhhhchHHHHHHhh----c-C-CCH-H-HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHH
Q 017651          234 KPQPPFDQVRPALPALAQLV----H-S-NDE-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP  305 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL----~-~-~d~-~-v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~  305 (368)
                      .+.  ....+.+++.+....    . . +|+ . -+.+-..+|.......+...     .-.++.|++-|.++.+.++..
T Consensus       155 ~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D  227 (262)
T PF14500_consen  155 FDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLD  227 (262)
T ss_pred             ccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHH
Confidence            542  222223333333322    1 1 232 1 23344444444444333221     235889999999999999999


Q ss_pred             HHHHHHHhhcCCh
Q 017651          306 ALRTVGNIVTGDD  318 (368)
Q Consensus       306 a~~~l~nl~~~~~  318 (368)
                      ++.+|...+...+
T Consensus       228 ~L~tL~~c~~~y~  240 (262)
T PF14500_consen  228 SLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHCC
Confidence            9999998876443

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.58  E-value=27  Score=37.42  Aligned_cols=114  Identities=12%  Similarity=0.125  Sum_probs=73.7

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH
Q 017651          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT  321 (368)
Q Consensus       242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~  321 (368)
                      +.+++|.|..-|.+++..++..|...++.+.......... -...+...++.-+.+.+..+|..++....++...++...
T Consensus       257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~-~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~  335 (1266)
T KOG1525|consen  257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE-TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA  335 (1266)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc-cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence            3567788888888999999999999999998765443220 011345555666667777888888877777654433111


Q ss_pred             HHHH----------------------------------HcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          322 QCII----------------------------------TYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       322 ~~~~----------------------------------~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      ....                                  ...++..+...+.+. .+.||++|+..|.-+-
T Consensus       336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDK-k~~VR~~Am~~LaqlY  404 (1266)
T KOG1525|consen  336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDK-KIKVRKQAMNGLAQLY  404 (1266)
T ss_pred             hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            1110                                  001444455555666 8899999988876553

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.46  E-value=2.4  Score=35.32  Aligned_cols=141  Identities=13%  Similarity=0.203  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCchH-HHHhcCcHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCCcchHHHhhCCChH
Q 017651           90 LQLEATTQFRKLLSIERSPPIE-EVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVP  163 (368)
Q Consensus        90 ~~~~a~~~l~~l~s~~~~~~~~-~~i~~g~i~~Lv~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~  163 (368)
                      ....|+..+.-++|   .|.++ .+++..+--.+..+|...+    ..-+|..++.+++.+.. ++.+....+....++|
T Consensus       116 RvcnaL~lLQclaS---hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP  192 (315)
T COG5209         116 RVCNALNLLQCLAS---HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP  192 (315)
T ss_pred             HHHHHHHHHHHHhc---CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence            34455555555554   34444 3555554334456665332    24688899999999887 4444556677788999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-------ChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          164 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG-------ALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~-------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .+++++...+.--+..|+.+++.+.+++...+-..-...       .+..++..+-......+...+..+-..||..
T Consensus       193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            999999998888888999999999988754322111111       1222222222334455556666666666544

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=90.11  E-value=6.4  Score=31.97  Aligned_cols=120  Identities=19%  Similarity=0.250  Sum_probs=79.3

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                      ....+|.+++-|...+...+--|...+..|... ..+.+-.++ ..++..+-..|.+.++++...++.+|..|+...+..
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            357889999999887777777777777777655 444433333 246777778889999999999999999998777755


Q ss_pred             HHHHHHc--CChHHHHHhhCCC----------CCccHHHHHHHHHHHHhc-CCHH
Q 017651          321 TQCIITY--GALPYLLGLLTHS----------HKKSIKKEACWTISNITA-GNRD  362 (368)
Q Consensus       321 ~~~~~~~--g~l~~l~~ll~~~----------~~~~v~~~a~~~l~nl~~-~~~~  362 (368)
                      ...+..+  .+++.+--+.+..          ....++.-..-+|..+-. |.++
T Consensus       115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            5555543  2233322111121          135667777777777765 4444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.05  E-value=1.4  Score=34.35  Aligned_cols=75  Identities=15%  Similarity=0.111  Sum_probs=61.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~  148 (368)
                      +++..|.+.+.+.++.+++.|+..+..++.........++....++..|+.++....++.|+..++..+...+..
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            467888889999999999999999998876553344456778889999999998844489999999999888763

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.95  E-value=3.6  Score=37.82  Aligned_cols=128  Identities=19%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhhH----------
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRCR----------  195 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nla~~~~~~~----------  195 (368)
                      ..-|..|+..|..++....+....++    ...+-.+|.      +.+..-++.|+..++.|+......+          
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v  300 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV  300 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence            45677888888888873222222222    122223333      3567889999999999986552211          


Q ss_pred             --HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 017651          196 --DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL  268 (368)
Q Consensus       196 --~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l  268 (368)
                        ..+....++|.|.  -.....+-++..|++.+..+-..-   ......+++|.++..|.+++.-|..+|+.++
T Consensus       301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l---~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL---PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence              1222222333332  112345667788899888877543   2345568999999999999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=89.53  E-value=14  Score=32.60  Aligned_cols=198  Identities=12%  Similarity=0.154  Sum_probs=134.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---CCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIE---RSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT  149 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~---~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~  149 (368)
                      +.+..++..+...+.+.+..++..+.+++...   +.+..+++. ...++..|+.--..  .+++-..+...|.....+ 
T Consensus        79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~--~~~iaL~cg~mlrEcirh-  155 (342)
T KOG1566|consen   79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN--TPEIALTCGNMLRECIRH-  155 (342)
T ss_pred             CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc--chHHHHHHHHHHHHHHhh-
Confidence            45788899999889889999988888886543   334444443 34455555555222  266666666666666663 


Q ss_pred             CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC---hHHHHHHhccccchhHHHHHHHH
Q 017651          150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA---LIPLLAQLNERAKLSMLRNATWT  226 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~---i~~l~~~l~~~~~~~~~~~a~~~  226 (368)
                      +...+.+....-+..+..++..++-++..-|..++-.+..........++..+.   ++..-..|..+.+.-+.+.+...
T Consensus       156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl  235 (342)
T KOG1566|consen  156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL  235 (342)
T ss_pred             HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence            556677777788888889998888888888888888776443333233333222   23323334378888899999999


Q ss_pred             HHHhhcCCCCCChhhh----hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          227 LSNFCRGKPQPPFDQV----RPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       227 L~~l~~~~~~~~~~~~----~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      +..+..+.++...+..    ...+..+..+|+.....++..|.-...-....
T Consensus       236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            9999888765543321    35667888889988888999888877766654

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=89.43  E-value=16  Score=33.05  Aligned_cols=155  Identities=17%  Similarity=0.104  Sum_probs=104.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCCcchHHHhhCC--ChHHHHHhhCC-----CC--------HHHHHHHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDHG--AVPIFVKLLAS-----PS--------DDVREQAVW  182 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g--~i~~L~~lL~~-----~~--------~~v~~~a~~  182 (368)
                      ++.+.+.|++.. +.+...++..|..++. ........+...-  -.+.|..++.-     ..        +.+|...+.
T Consensus        58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSSK-PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcCc-HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            778888899888 7888999999999998 6556666666542  23566666642     11        278877776


Q ss_pred             HHHHhh-CCChhhHHHHH-hcCChHHHHHHhccccchhHHHHHHHHHHH-hhcCCCCCC----hhhhhchHHHHHHhhcC
Q 017651          183 ALGNVA-GDSPRCRDLVL-SQGALIPLLAQLNERAKLSMLRNATWTLSN-FCRGKPQPP----FDQVRPALPALAQLVHS  255 (368)
Q Consensus       183 ~L~nla-~~~~~~~~~i~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~----~~~~~~~~~~L~~lL~~  255 (368)
                      .+..+. ..++..+..++ +.+.+..+.+-| ..++.++...++.+|.. +......+.    ...-...+..|..+...
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            655554 44555555555 455677888888 45778888888888884 444431111    11225677888887777


Q ss_pred             CCH----HHHHHHHHHHHHhhcCC
Q 017651          256 NDE----EVLTDACWALSYLSDGT  275 (368)
Q Consensus       256 ~d~----~v~~~a~~~l~~l~~~~  275 (368)
                      +++    .+...+-..|..+|..+
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCC
Confidence            766    78888888888888653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.36  E-value=1  Score=37.91  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCchHHHHhc-------CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch-HHHhhCC
Q 017651           89 SLQLEATTQFRKLLSIERSPPIEEVIQS-------GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDHG  160 (368)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~-------g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g  160 (368)
                      +-|..|+.++.|+.-.  ..+++.++..       .++..|+++|....++-.|+-|+-.|.+++.+++... ....+.+
T Consensus       139 SPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            5688999999999554  3444444433       3566778888777668999999999999999766555 4455678


Q ss_pred             ChHHHHHhhCCCC
Q 017651          161 AVPIFVKLLASPS  173 (368)
Q Consensus       161 ~i~~L~~lL~~~~  173 (368)
                      .|..|+.++.+..
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.27  E-value=4.4  Score=40.20  Aligned_cols=163  Identities=20%  Similarity=0.200  Sum_probs=89.3

Q ss_pred             cHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCCC-C-------CchHHHHhcCcHHHHHHhhc----CCCCHHHHHHH
Q 017651           75 SLPAMVAGVWS----DDSSLQLEATTQFRKLLSIER-S-------PPIEEVIQSGVVPRFVEFLM----REDYPQLQFEA  138 (368)
Q Consensus        75 ~i~~l~~~l~~----~~~~~~~~a~~~l~~l~s~~~-~-------~~~~~~i~~g~i~~Lv~lL~----~~~~~~v~~~a  138 (368)
                      .+..+..++++    +++.+...|+..+..++.... .       .+....+...+++.|...|.    ..+ ..-+..+
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~  510 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGD-EEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccC-HHHHHHH
Confidence            34555555553    334455555555554433210 1       11122233445667766665    334 6788889


Q ss_pred             HHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc-c
Q 017651          139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-R  214 (368)
Q Consensus       139 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~-~  214 (368)
                      +.+|+|+-..           ..++.|..++.+.   +..+|-.|+|+|..++...+..        +.+.++.++.+ .
T Consensus       511 LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~  571 (618)
T PF01347_consen  511 LKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTT  571 (618)
T ss_dssp             HHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TT
T ss_pred             HHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCC
Confidence            9999998752           3677888877765   6789999999999997776532        35667777644 3


Q ss_pred             cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-CHHHHHHHHH
Q 017651          215 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACW  266 (368)
Q Consensus       215 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~  266 (368)
                      .+.+++..|...|.. |  .|  .    ...+..+...+..+ +.+|...+..
T Consensus       572 e~~EvRiaA~~~lm~-~--~P--~----~~~l~~i~~~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  572 EDPEVRIAAYLILMR-C--NP--S----PSVLQRIAQSLWNEPSNQVASFVYS  615 (618)
T ss_dssp             S-HHHHHHHHHHHHH-T-----------HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred             CChhHHHHHHHHHHh-c--CC--C----HHHHHHHHHHHhhCchHHHHHHHHH
Confidence            467777777665554 2  11  1    13455566666543 4666555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.03  E-value=5.5  Score=30.58  Aligned_cols=95  Identities=13%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH-HHHHHcCChHHH
Q 017651          255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT-QCIITYGALPYL  333 (368)
Q Consensus       255 ~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~-~~~~~~g~l~~l  333 (368)
                      .+|+......|..+..-..++.         .++..|.+.|.++++.++..|+.++-.++..+.... ..+.+..++..|
T Consensus        15 ~~D~~~il~icd~I~~~~~~~k---------~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l   85 (133)
T cd03561          15 EPDWALNLELCDLINLKPNGPK---------EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL   85 (133)
T ss_pred             CccHHHHHHHHHHHhCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence            4566666666666643321211         246778888899999999999999999998886544 445555788889


Q ss_pred             HHhhCC--CCCccHHHHHHHHHHHHhc
Q 017651          334 LGLLTH--SHKKSIKKEACWTISNITA  358 (368)
Q Consensus       334 ~~ll~~--~~~~~v~~~a~~~l~nl~~  358 (368)
                      ..++..  ..++.|++.+.-.+.+-+.
T Consensus        86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          86 VKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            999876  3377899999888887764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=88.94  E-value=16  Score=32.71  Aligned_cols=154  Identities=12%  Similarity=0.077  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCC-----------ChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhh
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHG-----------AVPIFVKLLA------SPSDDVREQAVWALGNVAGDSPRC  194 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nla~~~~~~  194 (368)
                      -++|..|+.|+.....+|++.+..+++.-           ....++..|-      +.++.-...|+.+|..+..++++.
T Consensus        52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~  131 (312)
T PF04869_consen   52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEA  131 (312)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence            68999999999999998888887766421           1112444333      223333445666666666666665


Q ss_pred             HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHHHH
Q 017651          195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALS  269 (368)
Q Consensus       195 ~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-----~~d~~v~~~a~~~l~  269 (368)
                      ++.+..-                             ..+.. ..-......++.+..+|.     ..|+.++.--+..|.
T Consensus       132 Ke~al~V-----------------------------~~~~~-~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~  181 (312)
T PF04869_consen  132 KEQALRV-----------------------------TEGDE-SSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLI  181 (312)
T ss_dssp             HHHHTT-------------------------------EE---STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHH
T ss_pred             HHHHHcc-----------------------------cCCCC-CCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence            5544431                             01100 000111123444444332     345667666666666


Q ss_pred             HhhcCChHHHHHHHHc-CChHHHHHhcC---CCCcchHHHHHHHHHHhhc
Q 017651          270 YLSDGTNDKIQAVIEA-GVCPRLVELLG---HPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       270 ~l~~~~~~~~~~~~~~-~~~~~L~~lL~---~~~~~v~~~a~~~l~nl~~  315 (368)
                      .-..+++.....+++. +.++.|+....   +.+.-++--++..||-+..
T Consensus       182 ~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  182 VWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence            6666677777777766 47888888753   2345566666666665543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=88.87  E-value=1.9  Score=33.18  Aligned_cols=74  Identities=11%  Similarity=0.016  Sum_probs=58.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCH-HHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP-QLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~-~v~~~a~~~L~~l~~  147 (368)
                      +++..|.+.|+++++..+..|+..+..++.....+....+...+++..|+.++...... .|+..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999998887754334445566888999999999876533 388888888887765

Unpublished observations. Domain of unknown function.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.86  E-value=1.9  Score=36.38  Aligned_cols=79  Identities=23%  Similarity=0.269  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhcCCCcchHHHhhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCC
Q 017651          133 QLQFEAAWALTNIASGTSENTKVVIDHGA-------VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGA  203 (368)
Q Consensus       133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~  203 (368)
                      .-|..|+.+|..++- .+.+.+.++..+-       +..|++++.. .+.-.+|.|+-.|.|++..+.. +|....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            468999999999998 3666676666553       4555566654 6788999999999999976654 5566678889


Q ss_pred             hHHHHHHhc
Q 017651          204 LIPLLAQLN  212 (368)
Q Consensus       204 i~~l~~~l~  212 (368)
                      +..|+..+.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999994

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.71  E-value=9.5  Score=30.54  Aligned_cols=112  Identities=19%  Similarity=0.258  Sum_probs=71.5

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhCCC-CHHHHHHHHHHHHHhh---CCC
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLASP-SDDVREQAVWALGNVA---GDS  191 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~-~~~v~~~a~~~L~nla---~~~  191 (368)
                      .+..+..+|.+++ +.-+..++..+.-.+..++  .+.+.+.|  .+..++.+|+.+ ...+.+.++.+|..|.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4666788888887 7888888888877777432  34443433  568888888874 4677888888888875   455


Q ss_pred             hhhHHHHHhcC---ChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651          192 PRCRDLVLSQG---ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       192 ~~~~~~i~~~~---~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      |+....+....   +++.++.++..   ......++.+|..+....|
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHP  146 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCC
Confidence            55444443322   23344444421   4666677777777776544

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=88.67  E-value=6.4  Score=35.75  Aligned_cols=201  Identities=18%  Similarity=0.094  Sum_probs=103.2

Q ss_pred             HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--
Q 017651          114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--  191 (368)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~--  191 (368)
                      +...++..|+.++..+.++......+.+|..-...-    ..-+...++..+..-+.+..+.+|..-+.+++.+....  
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334457778888877655666666667766654321    01112235566677777777779998888888887511  


Q ss_pred             hhhHHHHHhcCChHHHHHHhcc---ccchhHH---HHHHHHHHHhhcCC-CCCChhh------hhchHHHHH---HhhcC
Q 017651          192 PRCRDLVLSQGALIPLLAQLNE---RAKLSML---RNATWTLSNFCRGK-PQPPFDQ------VRPALPALA---QLVHS  255 (368)
Q Consensus       192 ~~~~~~i~~~~~i~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~~~------~~~~~~~L~---~lL~~  255 (368)
                      ......+.  .+++.|++.+..   .+....+   ..++.++..++... +......      ..+-=|.++   ++.+.
T Consensus        95 ~~~~~~~~--~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvysk  172 (339)
T PF12074_consen   95 SDSLKFAE--PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSK  172 (339)
T ss_pred             chHHHHHH--HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhc
Confidence            11112221  267777777632   2211111   11222222222111 0000000      000000000   12222


Q ss_pred             -CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHH
Q 017651          256 -NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       256 -~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                       .+++-....+.++..+..+.......-....+...++.++.++  .+.+|..|+.++..+...++..
T Consensus       173 l~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~  240 (339)
T PF12074_consen  173 LASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL  240 (339)
T ss_pred             cCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence             3445555566666666544332221111234566788888777  7999999999999998887753

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=88.62  E-value=17  Score=33.38  Aligned_cols=156  Identities=17%  Similarity=0.055  Sum_probs=95.1

Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------CCCHHHHHHHHHHHHHhhc
Q 017651          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~----------~~d~~v~~~a~~~l~~l~~  273 (368)
                      ...+...|.+......+...+.++.-|++.+....-......+..|+.+-.          ..|.++...++.||+|+..
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf  126 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF  126 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence            344555554443444555566666667766533222222334444444321          2356899999999999999


Q ss_pred             CChHHHHHHHHcCChHHHHHhcCC-----CCcchHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhCCCC------
Q 017651          274 GTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSH------  341 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~g~l~~l~~ll~~~~------  341 (368)
                      ++....+..........+.+.+..     --..+...-++.|--+..-. +...+.+.+.++++.+-+++.+.-      
T Consensus       127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~  206 (532)
T KOG4464|consen  127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI  206 (532)
T ss_pred             ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence            988877778877776666666521     11234444555555554333 445556677899999999997541      


Q ss_pred             --------CccHHHHHHHHHHHHhcC
Q 017651          342 --------KKSIKKEACWTISNITAG  359 (368)
Q Consensus       342 --------~~~v~~~a~~~l~nl~~~  359 (368)
                              +-+..-+|..++.|++..
T Consensus       207 n~~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  207 NVPPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhheeec
Confidence                    124556788888888863

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.44  E-value=3.2  Score=31.91  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcC
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~l~~~  148 (368)
                      +++..|.+.|+++++..+..|+..+..++.....+....+....++..|+.++...  .++.++..++..+...+..
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            46888888999999999999999998887654233334455558888899999763  3379999999999888763

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=88.34  E-value=0.42  Score=27.83  Aligned_cols=38  Identities=32%  Similarity=0.394  Sum_probs=24.1

Q ss_pred             HHHhhcccCCCchHHHhhhHHHHHHHHHHhhhHHHHhhh
Q 017651           11 VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKR   49 (368)
Q Consensus        11 ~r~~~~k~~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr   49 (368)
                      +|...||+.+++.+.-+||++ ..+.-|.+|-+.++.-|
T Consensus         2 PR~sqYK~~~~~~~Q~eRR~~-~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    2 PRLSQYKNKGSALDQEERRRE-FLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TTCSCTT-TTTSCSHHHHHHH-HHHHHHSHHSHHHHHHH
T ss_pred             ccHHHhhcccchHhHHHHHHH-HHHHHHHHhHHHHHhcc
Confidence            477889986555555555544 44777888877766544

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.07  E-value=3.4  Score=33.11  Aligned_cols=110  Identities=25%  Similarity=0.213  Sum_probs=73.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHHhccccchhHHHHHHHHHHHhhcCC---C
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---P  235 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~  235 (368)
                      .+..+..+|.+++.+-+..++..+.-++..++  .+.+.+++  .+..++..|++.++..+...++.++..+...-   |
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45667788888888889888888888887753  23443433  47888899977778888999999998887643   3


Q ss_pred             CCChhhhhc----hHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          236 QPPFDQVRP----ALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       236 ~~~~~~~~~----~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      .-..+...+    +++.++.+++.  +.....++.+|..+...
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            322233333    44444444443  46666777777766644

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.90  E-value=3.7  Score=31.99  Aligned_cols=75  Identities=15%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .++..|..-|.+.++.++-.|+.+|-.+..+. ..+...+...+++..|..++....+..++..++..+..-+...
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            35667777777888999999999999998874 5588888888999999999966678899999988888877654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=87.85  E-value=3.2  Score=40.78  Aligned_cols=113  Identities=19%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             chHHHHHHhhcCC----CHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhc----CCCCcchHHHHHHHHHH
Q 017651          244 PALPALAQLVHSN----DEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELL----GHPSPSVLIPALRTVGN  312 (368)
Q Consensus       244 ~~~~~L~~lL~~~----d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL----~~~~~~v~~~a~~~l~n  312 (368)
                      ..+..+..++.++    .+.+...++-+++.++..   ..+.....+-..+++.+...|    +..+...+..++.+|||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            4556666776543    456777777777766531   111100111123445555544    23445556778888888


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhC-C-CCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLT-H-SHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~-~-~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      +.....           ++.+...+. + .....+|..|+|+|.+++...++.++.+
T Consensus       473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~  518 (574)
T smart00638      473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV  518 (574)
T ss_pred             cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            865332           233333333 1 1145788888898888877666666543

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=87.48  E-value=2.9  Score=32.37  Aligned_cols=75  Identities=9%  Similarity=0.003  Sum_probs=58.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhcC
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~~  148 (368)
                      +++..+.+.|+++++..++.|+..|..++.......-..+...+++..|++++..     ..++.|+..++..+...+..
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4678888899999999999999999888765534444566778899999999963     12378999999888887763

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=87.29  E-value=19  Score=31.33  Aligned_cols=168  Identities=17%  Similarity=0.142  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHHhcccc---chhHHHHHHHHHHHhhcCCCCCChhhhhc
Q 017651          175 DVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRP  244 (368)
Q Consensus       175 ~v~~~a~~~L~nla~~~-------~~~~~~i~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  244 (368)
                      ...+.++..|..++...       .+.|-.+.-.+.+|.++..+....   .......++..|+.+|........   ..
T Consensus        77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~L---a~  153 (262)
T PF14225_consen   77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNL---AR  153 (262)
T ss_pred             CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccH---HH
Confidence            34566777777776321       111222222234666666663333   124556778889999965322211   11


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651          245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI  324 (368)
Q Consensus       245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  324 (368)
                      ++....+-=..+..+....++..|..-..  ++.     +...+..++.+|.++-+.++..++.+|..+....+....  
T Consensus       154 il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--  224 (262)
T PF14225_consen  154 ILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--  224 (262)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence            22221111112234555555555543221  111     123577899999888889999999999999876653322  


Q ss_pred             HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ...+++..+.++++++    .-.+|..+|-++..
T Consensus       225 ~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  225 HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            4446788899999776    56788888877765

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4

Probab=87.18  E-value=3.3  Score=32.18  Aligned_cols=101  Identities=15%  Similarity=0.097  Sum_probs=51.1

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651          245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI  324 (368)
Q Consensus       245 ~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~  324 (368)
                      -...|+.+|..+...-....+..|.+=+.-..+. ..-++++++..++.-=.....--...|+..||.|..|..      
T Consensus        23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------   95 (154)
T PF11791_consen   23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------   95 (154)
T ss_dssp             HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT------
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc------
Confidence            3345566665544333333444444433222222 233444445444433222223346778888888877654      


Q ss_pred             HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                           +..|+++|.++ +..+...|+-+|+|..-
T Consensus        96 -----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL  123 (154)
T PF11791_consen   96 -----VQPLIDLLKSD-DEELAEEAAEALKNTLL  123 (154)
T ss_dssp             -----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred             -----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence                 67788889887 88899999999988553

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=87.09  E-value=2.2  Score=35.50  Aligned_cols=97  Identities=16%  Similarity=0.243  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-----CCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHH
Q 017651          260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYL  333 (368)
Q Consensus       260 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l  333 (368)
                      -...++..+.-++++ ++....++++.+--.+..+|..     +-..+|..++++||.++...+ .....+....++|.+
T Consensus       116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            345566666666666 4555677777766666666632     235789999999999987654 566667778999999


Q ss_pred             HHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          334 LGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++++..+ ++--+--|++++.-|..
T Consensus       195 LrIme~g-SElSktvaifI~qkil~  218 (315)
T COG5209         195 LRIMELG-SELSKTVAIFIFQKILG  218 (315)
T ss_pred             HHHHHhh-hHHHHHHHHHHHHHHhc
Confidence            9999998 77777777777777665

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=87.03  E-value=2.6  Score=42.69  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 017651          173 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL  252 (368)
Q Consensus       173 ~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l  252 (368)
                      .+.++.++.-+|+++|--....    .. ..+|.|++-|..+++..++.++.-++..+|...    -..+...+|.+...
T Consensus       944 ~~~vra~~vvTlakmcLah~~L----aK-r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCLAHDRL----AK-RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhhhHH----HH-HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence            3567888999999998543322    11 268999999988888888888888888888653    12345688999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651          253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       253 L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      |.++++-|+..++-.|.+|....--.     =.|  ++..+..+ -+.+++++..|=.+++.+.....
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK-----w~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK-----WNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhhhhh-----cchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999998542111     112  23334444 45568899999999999876443

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=86.49  E-value=21  Score=31.12  Aligned_cols=188  Identities=17%  Similarity=0.222  Sum_probs=99.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.+..|.+.|..+|+..+ .+.+++...          .++...++|.|+..=.  + +.+-..++..|.+++--  -..
T Consensus        13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~P--~~~   76 (266)
T PF04821_consen   13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTWP--IEL   76 (266)
T ss_pred             HHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCCC--HHH
Confidence            568888888887776654 333333322          2445556666655433  3 78889999999998872  111


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----------cccchhHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----------ERAKLSMLRNA  223 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----------~~~~~~~~~~a  223 (368)
                      -  .  +-.|        .+..-+.........+    ..++..+...+++..++.++.          ...+..+.+.+
T Consensus        77 ~--~--~~~~--------~~~~~~~~~~~l~~~l----~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lv  140 (266)
T PF04821_consen   77 L--V--ESQP--------KDKNQRRNIPELLKYL----QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELV  140 (266)
T ss_pred             h--c--cCCC--------CChHHHHHHHHHHHHH----HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHH
Confidence            0  0  0000        0111122222222222    124445555555555555441          12255677788


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC-Ccch
Q 017651          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSV  302 (368)
Q Consensus       224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v  302 (368)
                      +..+.|+..-++.........           .+...+.              ..+..+.+.|+...|+.+.++. ....
T Consensus       141 L~LiRNlL~Ip~~~~~~~~~~-----------~~~~~~d--------------~li~~l~~~~v~~lLL~l~s~~~~~~f  195 (266)
T PF04821_consen  141 LTLIRNLLAIPDPPSASKRSD-----------EDSSLHD--------------QLIWALFESGVLDLLLTLASSPQESDF  195 (266)
T ss_pred             HHHHHHHhcCCCCcccccccc-----------hhHHHHH--------------HHHHHHHHcCHHHHHHHHHhCccccch
Confidence            888888887642222111100           1222222              3334455678888888888665 3445


Q ss_pred             HHHHHHHHHHhhcCCh
Q 017651          303 LIPALRTVGNIVTGDD  318 (368)
Q Consensus       303 ~~~a~~~l~nl~~~~~  318 (368)
                      ....+.++..+..+.+
T Consensus       196 ~~~lLEIi~ll~k~~~  211 (266)
T PF04821_consen  196 NLLLLEIIYLLFKGQD  211 (266)
T ss_pred             hhHHHHHHHHHHcCCC
Confidence            5577777777776654

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=85.88  E-value=13  Score=39.13  Aligned_cols=235  Identities=17%  Similarity=0.214  Sum_probs=127.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHH--------HhhcCCCCHHHHHHHHHHHHHHh
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV--------EFLMREDYPQLQFEAAWALTNIA  146 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv--------~lL~~~~~~~v~~~a~~~L~~l~  146 (368)
                      .+..|+..+.+..++.|.-++..++.++...........++..++..+.        ++...+--..++..++|+|..+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            4678888888999999999999999987754222222223322222221        11111111468999999999887


Q ss_pred             cCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhccccchhHHHHHH
Q 017651          147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLNERAKLSMLRNAT  224 (368)
Q Consensus       147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--~~~i~~l~~~l~~~~~~~~~~~a~  224 (368)
                      .+..+.  .+  ...+..+.+++..++.+++.-.+..+-....   ..++.+..  ..+++..+.-| .+.+..++..++
T Consensus       158 ~~~~~s--~~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa  229 (1549)
T KOG0392|consen  158 KHMDES--LI--KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA  229 (1549)
T ss_pred             HhhhhH--hh--HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence            742211  11  1246778888888777776654444432211   11111111  01344445555 566788888888


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChHHHH----HHHHcCChHHHHHhcCCC
Q 017651          225 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE--EVLTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       225 ~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~--~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~~L~~lL~~~  298 (368)
                      .++.-.....+......+..++..+...+..-|.  .-.......+..++... +..+    .-.+.|+++.+..++.+.
T Consensus       230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~~~  308 (1549)
T KOG0392|consen  230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLRHT  308 (1549)
T ss_pred             HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHHHH
Confidence            8777666544222222333344444443322111  01111112222333322 1111    112248889999999887


Q ss_pred             CcchHHHHHHHHHHhhcCCh
Q 017651          299 SPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       299 ~~~v~~~a~~~l~nl~~~~~  318 (368)
                      =..++..++..+..+....+
T Consensus       309 i~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  309 ISSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHHhcCC
Confidence            77788888888888875443

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.84  E-value=22  Score=30.62  Aligned_cols=82  Identities=20%  Similarity=0.338  Sum_probs=56.5

Q ss_pred             hcCcHHHHHHhhcCCCCH-------HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCC--HHHHHHHHHHHH
Q 017651          115 QSGVVPRFVEFLMREDYP-------QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS--DDVREQAVWALG  185 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~  185 (368)
                      +...+|.++++++.++++       -+-.....+|..++            .|-++.|..++.+++  .-++..|+.+|.
T Consensus        71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~  138 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA  138 (249)
T ss_pred             hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            345689999999876621       12222233333333            367888888888754  678999999999


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHH
Q 017651          186 NVAGDSPRCRDLVLSQGALIPLLAQ  210 (368)
Q Consensus       186 nla~~~~~~~~~i~~~~~i~~l~~~  210 (368)
                      .++...+.-|+.+++  .+..++..
T Consensus       139 ~l~~~~~~~Re~vi~--~f~~ll~~  161 (249)
T PF06685_consen  139 FLVHEGPISREEVIQ--YFRELLNY  161 (249)
T ss_pred             HHHHcCCCCHHHHHH--HHHHHHHH
Confidence            999998888888776  45555554

The function of this family is unknown.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.79  E-value=64  Score=35.94  Aligned_cols=213  Identities=16%  Similarity=0.083  Sum_probs=107.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      +..++..|..++ |..+..+..+++.++..-++  ..++ .+....+++-+.+ .++-.|..-.-++|.+-.+...+-+.
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            344455555556 77777788888877763111  1111 1234555665555 34444444445555553322111111


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc----
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD----  273 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~----  273 (368)
                      -.....+..++.+-..+..+.++..++.++..+...........++..+..+..+|-+..+ ...+.-.+++....    
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~-~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT-SHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc-chhhhhhhhccccccchh
Confidence            1112246667777755557799999999999887664222233445555555565543211 11122222222111    


Q ss_pred             -------------CCh--HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC
Q 017651          274 -------------GTN--DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT  338 (368)
Q Consensus       274 -------------~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~  338 (368)
                                   .+.  +.+.. +..-.+-...-+++++++.++..++.++.++-...+....   -.-+++.+..+|.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence                         111  11111 1122233344445677889999999999998655543221   1123555666665


Q ss_pred             CC
Q 017651          339 HS  340 (368)
Q Consensus       339 ~~  340 (368)
                      ++
T Consensus      1109 s~ 1110 (2067)
T KOG1822|consen 1109 SS 1110 (2067)
T ss_pred             ch
Confidence            55

>PRK14707 hypothetical protein; Provisional

Probab=85.61  E-value=70  Score=36.24  Aligned_cols=278  Identities=15%  Similarity=0.071  Sum_probs=143.2

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        75 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +|..+++.+. .++...-..|+..|...+..+ ......+-..|+-..|=-+-+.++.+.....+.++=..++. .+..+
T Consensus       206 ~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~  283 (2710)
T PRK14707        206 GVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGLR  283 (2710)
T ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHH
Confidence            4555555554 233333344455555444432 23333333444444444444556644555555555555654 34444


Q ss_pred             HHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH-Hhh
Q 017651          154 KVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS-NFC  231 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~-~l~  231 (368)
                      +.+-..+ +...++-| +=++..+...++..|..=..+++..+..+-.. .+...++-|.+-++..+-+.++.+|. .++
T Consensus       284 ~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~  361 (2710)
T PRK14707        284 KALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLV  361 (2710)
T ss_pred             HhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence            4443333 33333333 33677777766666665555666665443333 45566666666666666555555555 466


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          232 RGKPQPPFDQV-RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      .+. ....... .++-..|..+-+-++..+...++..|..=..++.+..+.+-..|+-..|-.+-+=++..+...+...+
T Consensus       362 ~d~-~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        362 ADP-ELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             cCH-hhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence            553 2222222 33333444444456667777777766655555555545444445555555555667777777777777


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .--...+.+.++.+--.+ +...+..++.=.+..+..+|+..|.-=.+
T Consensus       441 A~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~  487 (2710)
T PRK14707        441 AGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLA  487 (2710)
T ss_pred             HHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence            766666655554333223 33333334332255566666555544333

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=85.57  E-value=8.8  Score=33.83  Aligned_cols=136  Identities=15%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--hhhhchH----HHHHHhhc--------CCCHHHHHHHHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRPAL----PALAQLVH--------SNDEEVLTDACWAL  268 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~----~~L~~lL~--------~~d~~v~~~a~~~l  268 (368)
                      ++|+++.++ .+.+..++...+.+|..+....+....  ..-.|..    +.+..++.        .+...+...+.-++
T Consensus       120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            689999999 777999999999999999987654441  1112322    34444444        23456777777777


Q ss_pred             HHhhcC-----C---hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC
Q 017651          269 SYLSDG-----T---NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS  340 (368)
Q Consensus       269 ~~l~~~-----~---~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~  340 (368)
                      ..|+..     .   ......++..|++..+...-+.+.+.++...+..+..++..-....-.-++ .+++.+.+.+.++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~-rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ-RIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhcCC
Confidence            777431     1   122233333344433333333334677777777777666432211111111 4566666666654

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=85.47  E-value=10  Score=27.33  Aligned_cols=69  Identities=16%  Similarity=0.186  Sum_probs=54.4

Q ss_pred             HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (368)
Q Consensus       284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~  354 (368)
                      ..+++..|+++++.+.......++..+..++..+. ....+.+.|....|.++-... ++..+...-.++.
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il~   96 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-AAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEILD   96 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-HHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence            44678899999999988899999999999887654 566688889999988877666 6777766655543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=85.05  E-value=11  Score=35.41  Aligned_cols=152  Identities=12%  Similarity=0.096  Sum_probs=69.1

Q ss_pred             hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHH
Q 017651          200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK  278 (368)
Q Consensus       200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~  278 (368)
                      +...+|++...| +.+-.++...+...++.|.+..+ ...-..+..++|.|+.-.--....-.-.....|..+....+..
T Consensus       115 E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~  193 (435)
T PF03378_consen  115 EEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF  193 (435)
T ss_dssp             HHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh
Confidence            334678888888 66566777777778777776544 2222333445554432211111111122223333332221211


Q ss_pred             HHHHHHc----CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          279 IQAVIEA----GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       279 ~~~~~~~----~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                         +...    +++..+-+++.+...+  ..+...|..+...-+. ..+..+. .++..++.-|+++..+..++.-+..+
T Consensus       194 ---i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~  267 (435)
T PF03378_consen  194 ---IVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFL  267 (435)
T ss_dssp             -------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred             ---hcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence               1211    2333344555554332  4577777777665542 2222222 34555555555443555666666666


Q ss_pred             HHHhc
Q 017651          354 SNITA  358 (368)
Q Consensus       354 ~nl~~  358 (368)
                      +.++.
T Consensus       268 ~~~~~  272 (435)
T PF03378_consen  268 SLFAI  272 (435)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=84.94  E-value=6.3  Score=30.30  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchh-HHHHHHHHHHHhhcCC
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLS-MLRNATWTLSNFCRGK  234 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~-~~~~a~~~L~~l~~~~  234 (368)
                      ++..|-.-|.++++.++-.|+.+|-.+..+. +.+...+...+++..|..++....+.. ++..++..+..-....
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            4566777777889999999999999998874 557888888889999999986555444 8888888888776654

Unpublished observations. Domain of unknown function.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.72  E-value=6.7  Score=30.62  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      ++..|..-|.+.++.++-.|+..|-.+..+.. .++..+...+++..|..++....+..++..++..+...+...
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            56667777778899999999999999987764 477888888899999999965578999999999988877655

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal

Probab=84.72  E-value=15  Score=29.39  Aligned_cols=110  Identities=14%  Similarity=0.121  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhcCC-----CCC---chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh-hC
Q 017651           89 SLQLEATTQFRKLLSIE-----RSP---PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI-DH  159 (368)
Q Consensus        89 ~~~~~a~~~l~~l~s~~-----~~~---~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~  159 (368)
                      ..+.-++..+..++...     +.+   ....+++..+.+.+++.+.+++ +.+-..+++++..+....   +..+. +.
T Consensus        37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~~---~~~Lk~el  112 (168)
T PF12783_consen   37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSRF---RSHLKLEL  112 (168)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            34445555555554432     122   4455677888999999998877 899999999999988632   22211 22


Q ss_pred             C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 017651          160 G-AVPIFVK-LLASPS--DDVREQAVWALGNVAGDSPRCRDLVLSQG  202 (368)
Q Consensus       160 g-~i~~L~~-lL~~~~--~~v~~~a~~~L~nla~~~~~~~~~i~~~~  202 (368)
                      + .++.++. ++.+++  ...++.++.++..++.+.....+...+.+
T Consensus       113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYD  159 (168)
T PF12783_consen  113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVNYD  159 (168)
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHcC
Confidence            2 2344444 666543  46788899999999988766666555443

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=84.55  E-value=29  Score=30.87  Aligned_cols=128  Identities=17%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             HHHhhCCChHHHHHhhCC-----------------------CCHHHHHHHHHHHHHhhCCChhhHH--------------
Q 017651          154 KVVIDHGAVPIFVKLLAS-----------------------PSDDVREQAVWALGNVAGDSPRCRD--------------  196 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~-----------------------~~~~v~~~a~~~L~nla~~~~~~~~--------------  196 (368)
                      ..+.+.|.||.|-+++..                       ++..++.+-+..+.+++........              
T Consensus         3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~   82 (303)
T PF12463_consen    3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL   82 (303)
T ss_pred             HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence            456677888888877753                       1235788999999999874321111              


Q ss_pred             -------HHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCCC-CCh--hhhhchHHHHHHhhcCC---CHHHHH
Q 017651          197 -------LVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQ-PPF--DQVRPALPALAQLVHSN---DEEVLT  262 (368)
Q Consensus       197 -------~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~-~~~--~~~~~~~~~L~~lL~~~---d~~v~~  262 (368)
                             .-.+.|.+..++..+...+ +...+-..+.|+-.+.++.+. ...  ....|+++.++.-+-++   +..+..
T Consensus        83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q  162 (303)
T PF12463_consen   83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ  162 (303)
T ss_pred             cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence                   1124566777887775444 667788899999999999744 233  23378888888766544   356888


Q ss_pred             HHHHHHHHhhcCChHHHHH
Q 017651          263 DACWALSYLSDGTNDKIQA  281 (368)
Q Consensus       263 ~a~~~l~~l~~~~~~~~~~  281 (368)
                      ...-.||.|..++......
T Consensus       163 ~~FDLLGELiK~n~~~f~~  181 (303)
T PF12463_consen  163 SNFDLLGELIKFNRDAFQR  181 (303)
T ss_pred             HHHHHHHHHHCCCHHHHHH
Confidence            8999999999887655443

Proteins in this family are typically between 399 and 797 amino acids in length.

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.20  E-value=48  Score=33.60  Aligned_cols=252  Identities=15%  Similarity=0.144  Sum_probs=147.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ...|=+.++++....+-+++..+-++.... +.+  .+++. ..-.|.+.+..++ -.+|...+++...    .....+.
T Consensus        26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q----~g~hln~   96 (970)
T KOG1988|consen   26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQ----SGKHLNK   96 (970)
T ss_pred             HHHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhh----ccccchh
Confidence            455666777777777888888887776543 222  23222 2445667777777 6888877777762    1222333


Q ss_pred             Hhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          156 VID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       156 ~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      +.. ...+..+.....+.|+.-+..++..++.++.--|+.       .-...++..-..+.+.--.+.++.+..+++.-.
T Consensus        97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s  169 (970)
T KOG1988|consen   97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSHHELEVEAAEFAAACFAAQS  169 (970)
T ss_pred             hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence            222 223333344445678888999999999887554443       345666655324444444567777777776542


Q ss_pred             CCCChhhhhchHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHH
Q 017651          235 PQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVG  311 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~  311 (368)
                        ..+.  .++.-.+.+++...+  +......+-+++.+..+....      ..+....+.++ ..+..+-..+-+.+..
T Consensus       170 --k~FA--~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A------~ra~~l~m~lv~~tps~d~~v~fL~stT  239 (970)
T KOG1988|consen  170 --KDFA--CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA------SRAFGLCMSLVSGTPSIDRVVAFLYSTT  239 (970)
T ss_pred             --hhhH--HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh------HHHHHHHHHHhcCCCcccceeeehhhhH
Confidence              1111  133334445554443  445666777777776542211      22344555565 3344444556677777


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +++...-..+     .+-++.+.+.++.+....+++.+.|.+.+++.
T Consensus       240 ~Lasrs~~ai-----~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  240 NLASRSLVAI-----SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHHHHHHHHh-----HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            7775432221     25577788888755466788889999888874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.70  E-value=47  Score=32.66  Aligned_cols=181  Identities=17%  Similarity=0.135  Sum_probs=94.5

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHh---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 017651          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI---DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV  198 (368)
Q Consensus       122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i  198 (368)
                      |--+++.+  ++++.-|+-+|.-+..+.+.+...+-   ....+..++..+. .++..+-.++++|.|+..+ +..+..+
T Consensus       550 l~~l~~wp--~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~  625 (745)
T KOG0301|consen  550 LAILLQWP--VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELF  625 (745)
T ss_pred             HHHHhcCC--HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHH
Confidence            33344444  58888888888888775433332222   1234445555554 4466778899999999988 5666666


Q ss_pred             HhcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHhh
Q 017651          199 LSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLS  272 (368)
Q Consensus       199 ~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~  272 (368)
                      ...  ...++..+.   ..++..++........|++-.-  ........+-+...+..++.. +|-+.....+.+|++|+
T Consensus       626 ~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~  703 (745)
T KOG0301|consen  626 MSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM  703 (745)
T ss_pred             HHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence            553  333333332   2334556655555555544221  111111111222223333322 24456677888999999


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCC-CCcchHHHHHHH
Q 017651          273 DGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRT  309 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~  309 (368)
                      ..+....+ +.+.--+..++.-+++ .+.......++.
T Consensus       704 t~~~~~~~-~A~~~~v~sia~~~~~~~~~~~~k~~a~~  740 (745)
T KOG0301|consen  704 TVDASVIQ-LAKNRSVDSIAKKLKEAVSNPSGKNIARD  740 (745)
T ss_pred             cccHHHHH-HHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence            87655533 3333335555555532 233334444443

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=83.51  E-value=7.3  Score=30.11  Aligned_cols=125  Identities=18%  Similarity=0.231  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC---------hHHHHH----HHH
Q 017651          219 MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---------NDKIQA----VIE  284 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~---------~~~~~~----~~~  284 (368)
                      ++...+.+++.++... |..-    ..+++.++.++.++ +.-....+.+|..+...-         ..+...    +.+
T Consensus         4 i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~   78 (148)
T PF08389_consen    4 IRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence            5566777777777654 3322    24666677776663 444444555555443210         111111    111


Q ss_pred             --cCChHHHHHhcCCCC----cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          285 --AGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       285 --~~~~~~L~~lL~~~~----~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                        ..++..+.+.+....    ..+...++.+++..+..-+  ...+.+.++++.+..+|.++   .++..|+-+|
T Consensus        79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl  148 (148)
T PF08389_consen   79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence              134445555553322    7788999999999988544  55677788999999999544   5688888765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=83.10  E-value=5.4  Score=31.78  Aligned_cols=145  Identities=15%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             ChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          203 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       203 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                      .++.|+++|+.+.+..+++.++.+++.|---+|-..... .+..+.-.  -...+......... ........++.    
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~-~~~~~~~~--~~~~~~~~~~~~l~-~~~~~~~~ee~----   82 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSI-QKSLDSKS--SENSNDESTDISLP-MMGISPSSEEY----   82 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcc-cccCCccc--cccccccchhhHHh-hccCCCchHHH----
Confidence            467778888767789999999999998876554221111 01000000  00011111111111 11111122222    


Q ss_pred             HHcCChHHHHHhcCCCC-cchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          283 IEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       283 ~~~~~~~~L~~lL~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      .-..++..|+..|++++ ..-...++.++.++.......+-..+. .++|.++..+.+. .+..++...+-|+.+.
T Consensus        83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~-~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTC-PDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence            22335677777776654 233345666666665333222322232 6788999999877 5577777777777765

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=81.95  E-value=7  Score=34.10  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=85.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcC--cHHHHHHhhcCC---CCHHHHHHHHHHHHHHhcCCC
Q 017651           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSG--VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTS  150 (368)
Q Consensus        77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g--~i~~Lv~lL~~~---~~~~v~~~a~~~L~~l~~~~~  150 (368)
                      ..+.+.+.+=.++.++-++..+|-++.   .+...... ..+  +...+..++...   ..+..+.-+++++.|+..+ +
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~  141 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAAL---HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-P  141 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCC---CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-C
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHh---CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-C
Confidence            334444433233346667777765543   23333333 221  244455554432   3478899999999999984 6


Q ss_pred             cchHHHhhCC--ChHHHHHhhCCC----CHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHHHHHh-ccccchhHHHH
Q 017651          151 ENTKVVIDHG--AVPIFVKLLASP----SDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQL-NERAKLSMLRN  222 (368)
Q Consensus       151 ~~~~~~~~~g--~i~~L~~lL~~~----~~~v~~~a~~~L~nla~~~~~~~-~~i~~~~~i~~l~~~l-~~~~~~~~~~~  222 (368)
                      ..+..+....  .+-..+..+...    +..++..++..+.|++......+ +.-.....+..+...+ ....++++...
T Consensus       142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            6666666542  233333333333    78899999999999973211110 0000111344555533 23468999999


Q ss_pred             HHHHHHHhhcCC
Q 017651          223 ATWTLSNFCRGK  234 (368)
Q Consensus       223 a~~~L~~l~~~~  234 (368)
                      ++-++++|....
T Consensus       222 ~LvAlGtL~~~~  233 (268)
T PF08324_consen  222 LLVALGTLLSSS  233 (268)
T ss_dssp             HHHHHHHHHCCS
T ss_pred             HHHHHHHHhccC
Confidence            999999999553

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.81  E-value=94  Score=34.77  Aligned_cols=198  Identities=16%  Similarity=0.122  Sum_probs=111.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  238 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  238 (368)
                      -.+..++..|..+++..+..+..+++.+++..+..  .+ -.+..+.+++.+....|+-.+.--.-++..+-++. ....
T Consensus       876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s  952 (2067)
T KOG1822|consen  876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS  952 (2067)
T ss_pred             HHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            34555666666788888888888888888654321  11 11245667777756666666666666666666665 3334


Q ss_pred             hhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-CC--cchHH----------
Q 017651          239 FDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS--PSVLI----------  304 (368)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~--~~v~~----------  304 (368)
                      .......+..+..+-+++ +|.|+..++.++..+++.........++. .+..+..+|-+ +.  .++..          
T Consensus       953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen  953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred             chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence            444456677777777655 56999999999999987654443333332 23344444422 21  11111          


Q ss_pred             ---HHHHHHHHhhcCChH--HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          305 ---PALRTVGNIVTGDDF--QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       305 ---~a~~~l~nl~~~~~~--~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                         ....++|.=..++..  .+. .+..-.+-...-++.++ ++.++.+|..++-++---.|-+
T Consensus      1032 ~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~ 1093 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRH 1093 (2067)
T ss_pred             hHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchh
Confidence               222222222222221  111 11112233344445566 8888999999988876543333

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=81.73  E-value=33  Score=29.53  Aligned_cols=157  Identities=17%  Similarity=0.221  Sum_probs=78.6

Q ss_pred             cHHHHHHhhcCCC----------CHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017651          118 VVPRFVEFLMRED----------YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV  187 (368)
Q Consensus       118 ~i~~Lv~lL~~~~----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  187 (368)
                      ++|.|+.+|....          .......|+..|+.+-.           .-+++.++++++.++..+-.    .+|-.
T Consensus        32 i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~----l~GD~   96 (249)
T PF06685_consen   32 ITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLED----LFGDF   96 (249)
T ss_pred             hhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHH----HHcch
Confidence            4666666665411          02334455555554432           35799999999876542111    11111


Q ss_pred             h-CCChhhHHHHHhcCChHHHHHHhcccc-chhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHH
Q 017651          188 A-GDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC  265 (368)
Q Consensus       188 a-~~~~~~~~~i~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~  265 (368)
                      . .+-+.. -..+-.|-++.|.+++.+.. +.-++..++.++..+....+......+.-+...+...+..++..+...-.
T Consensus        97 ~tE~l~~i-lasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv  175 (249)
T PF06685_consen   97 ITEDLPRI-LASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLV  175 (249)
T ss_pred             hHhHHHHH-HHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence            1 111111 01122345777777775444 66677788999999998765555544433333344445444444333333


Q ss_pred             HHHHHhhcC-ChHHHHHHHHcCChHH
Q 017651          266 WALSYLSDG-TNDKIQAVIEAGVCPR  290 (368)
Q Consensus       266 ~~l~~l~~~-~~~~~~~~~~~~~~~~  290 (368)
                      ..+..|... -...++.+.+.|.++.
T Consensus       176 ~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  176 ADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             HHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            333333211 1233445555566544

The function of this family is unknown.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=81.69  E-value=13  Score=30.25  Aligned_cols=76  Identities=16%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-CCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC  194 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~  194 (368)
                      -.+|.+++-|...+ ...+..|...+..+... ..+..-.++ .-.|..+-..|.+.++++...++.+|..|+..++..
T Consensus        38 ~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   38 HYLPIFFDGLRETE-HPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             hHHHHHHhhhhccC-ccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            45788888887776 46677777777776654 222222222 246677778888999999999999999996555443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=81.36  E-value=32  Score=31.20  Aligned_cols=218  Identities=16%  Similarity=0.116  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHh
Q 017651          134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQL  211 (368)
Q Consensus       134 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l  211 (368)
                      -|...+.+|..+.. .+      +...++..|..++.. .++......+.+++.=+..- .+.     ....+..+.+=+
T Consensus         3 ~r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl   70 (339)
T PF12074_consen    3 QRVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGL   70 (339)
T ss_pred             HHHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHh
Confidence            34455556666555 22      223455666666653 55665666666655433111 111     111334444444


Q ss_pred             ccccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc----CCCHHHH---HHHHHHHHHhhcCChHHHHH--
Q 017651          212 NERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH----SNDEEVL---TDACWALSYLSDGTNDKIQA--  281 (368)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~----~~d~~v~---~~a~~~l~~l~~~~~~~~~~--  281 (368)
                       .+..+.+++.-+.++...+... ..........++|.|.+.+.    ++-+...   ..++.++..+.....+..+.  
T Consensus        71 -~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~  149 (339)
T PF12074_consen   71 -KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKN  149 (339)
T ss_pred             -cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhh
Confidence             4445557777777777766522 22233444667888877773    2222211   11111111122211111111  


Q ss_pred             HH----HcCChHHHH---HhcCC-CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHHH
Q 017651          282 VI----EAGVCPRLV---ELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT  352 (368)
Q Consensus       282 ~~----~~~~~~~L~---~lL~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~  352 (368)
                      ..    ..+-=+.++   ++.+. .+++.....++++..+..+.+.....-....+-..++.++-++. .+.+|+.|.-+
T Consensus       150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~  229 (339)
T PF12074_consen  150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA  229 (339)
T ss_pred             hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            00    000000000   11112 34455666777777776554422211112234555666666653 68899999999


Q ss_pred             HHHHhcCCHHHh
Q 017651          353 ISNITAGNRDQI  364 (368)
Q Consensus       353 l~nl~~~~~~~i  364 (368)
                      +..+.+.+++.+
T Consensus       230 l~~l~~~~~~~l  241 (339)
T PF12074_consen  230 LKKLYASNPELL  241 (339)
T ss_pred             HHHHHHhChHHH
Confidence            999998877744

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=81.30  E-value=16  Score=26.37  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 017651          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL  184 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L  184 (368)
                      ..+++..|++.++.+. +..+.+++..|..++. ++.....+.+-|+...|.++-...++..+..+-.++
T Consensus        28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4456777888888777 5688999999999888 477778888889999877777666666665544443

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=80.37  E-value=52  Score=31.60  Aligned_cols=144  Identities=17%  Similarity=0.160  Sum_probs=86.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhcC
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-------~~~~v~~~a~~~L~~l~~~  148 (368)
                      +.++.+.+.++++..+.+|+..|+.      ++-...     ++|.|+.++...       ++-.+-...+..+..+.. 
T Consensus       209 y~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-  276 (576)
T KOG2549|consen  209 YKEITEACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-  276 (576)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-
Confidence            5677777778888888888888761      233333     378888888753       224455556666666665 


Q ss_pred             CCcchHHHhhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccc-cch
Q 017651          149 TSENTKVVIDHGAVPIFVKLLAS----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKL  217 (368)
Q Consensus       149 ~~~~~~~~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~-~~~  217 (368)
                      |+...-.-.=.-.+|.++.++-+          ....+|..|+..+..++.+-....+. +...++..+.+.+... .+.
T Consensus       277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~  355 (576)
T KOG2549|consen  277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPL  355 (576)
T ss_pred             CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCc
Confidence            44433222222466777765532          34679999999999988765443233 3334566666666333 244


Q ss_pred             hHHHHHHHHHHHhhc
Q 017651          218 SMLRNATWTLSNFCR  232 (368)
Q Consensus       218 ~~~~~a~~~L~~l~~  232 (368)
                      ....-++..|..|..
T Consensus       356 st~YGai~gL~~lg~  370 (576)
T KOG2549|consen  356 STHYGAIAGLSELGH  370 (576)
T ss_pred             hhhhhHHHHHHHhhh
Confidence            555555555555543

>PRK14707 hypothetical protein; Provisional

Probab=80.14  E-value=1.1e+02  Score=34.73  Aligned_cols=236  Identities=13%  Similarity=0.053  Sum_probs=121.8

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           75 SLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        75 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      .+...++.+. .++...-..|+..|..-+..+ ....+.+-..|+-..|--+-+.++ ..+-..++..|..-..++.+.+
T Consensus       374 ~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d-~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l~  451 (2710)
T PRK14707        374 GVSSVLNALSKWPDTPVCAAAASALAEHVVDD-LELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTELC  451 (2710)
T ss_pred             HHHHHHhhhhcCCCchHHHHHHHHHHHHhccC-hhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHHH
Confidence            3445555554 456556666666666555532 334444555565555555556788 5677777777777666566666


Q ss_pred             HHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccc-hhHHHHHHHHHHHhh
Q 017651          154 KVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAK-LSMLRNATWTLSNFC  231 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~-~~~~~~a~~~L~~l~  231 (368)
                      +.+--.+ |...++-|+ =++..+-.+++..|..=..+.+..++.+--.++... ++-|.+.++ ......+.|.-..+.
T Consensus       452 ~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~-L~aLSK~Pd~~~c~~A~~~lA~rl~  529 (2710)
T PRK14707        452 KALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIA-LHSLSKWPDTPICAEAASALAERVV  529 (2710)
T ss_pred             hhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHH-HHHhhcCCCcHHHHHHHHHHHHHhc
Confidence            5554444 333444443 366666666666665444444455555444433333 333435554 444555666666666


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcc-hHHHHHHH
Q 017651          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPS-VLIPALRT  309 (368)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~-v~~~a~~~  309 (368)
                      .............+...+..+-+.++......+...|..+....+.. ..-++..-+..++.-| +-++.. .+..+.++
T Consensus       530 ~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~L  608 (2710)
T PRK14707        530 DELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVNAL  608 (2710)
T ss_pred             cchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHHHH
Confidence            44322222112223333333444556666666666666655443333 2333344455555555 445443 34444444


Q ss_pred             HHHhhc
Q 017651          310 VGNIVT  315 (368)
Q Consensus       310 l~nl~~  315 (368)
                      .+.+..
T Consensus       609 A~~l~~  614 (2710)
T PRK14707        609 AERLVD  614 (2710)
T ss_pred             HHHhcc
Confidence            444444

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=80.06  E-value=18  Score=28.04  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=57.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchh---HHHHHHHHHHHhhcCC
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLS---MLRNATWTLSNFCRGK  234 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~---~~~~a~~~L~~l~~~~  234 (368)
                      ++..|-.-|.+.++.++..|+.+|-.+..+. +.++..+....++..|..++.......   ++..+...+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            4566777788889999999999999998876 568888888888999999886544433   8888887777766554

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=80.03  E-value=45  Score=30.00  Aligned_cols=179  Identities=10%  Similarity=0.043  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 017651          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLAS--------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  203 (368)
Q Consensus       133 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~  203 (368)
                      .++.+.+..+.......+ ..+. +....+|+|+. .|.+        .++++......++..+-..-...-..+.+. +
T Consensus        42 ~iKkeIL~Li~t~i~~~~-~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v  118 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAE-DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V  118 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S--HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence            577888888888777433 3333 33456777776 4432        345555544444444443222222344443 6


Q ss_pred             hHHHHHHhcccc--chhHHHHHHHHHHHhhcCCCC----CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---
Q 017651          204 LIPLLAQLNERA--KLSMLRNATWTLSNFCRGKPQ----PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---  274 (368)
Q Consensus       204 i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---  274 (368)
                      +.+.+.++.++.  -++.+......|..++...+.    -+......++..++-.++|.+.++...++.++..+...   
T Consensus       119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            777888885443  467777777777777765321    11223345667777778999999999999999888743   


Q ss_pred             -ChHHHHHHHHcCCh---HHHHHhcCCC-CcchHHHHHHHHHHhh
Q 017651          275 -TNDKIQAVIEAGVC---PRLVELLGHP-SPSVLIPALRTVGNIV  314 (368)
Q Consensus       275 -~~~~~~~~~~~~~~---~~L~~lL~~~-~~~v~~~a~~~l~nl~  314 (368)
                       +++....+.+.-.+   ..+...+.++ ....-..-+.+|.++.
T Consensus       199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf  243 (319)
T PF08767_consen  199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF  243 (319)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence             34555566665433   3344444332 2222333334445444

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
4b8j_A	528	Rimp_alpha1a Length = 528		6e-15
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-154
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-101
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		3e-93
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-92
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-92
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		3e-92
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		3e-92
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		3e-92
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		4e-92
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		6e-91
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		7e-91
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-87
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		4e-87
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		4e-87
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		4e-87
1ial_A	453	Importin Alpha, Mouse Length = 453		4e-87
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		5e-87
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		5e-87
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		5e-87
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		6e-87
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		6e-87
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		6e-87
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		6e-87
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		7e-87
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		7e-87
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		6e-86
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-36
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-36
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		4e-30
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-26
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-27
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		6e-25
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-26
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		5e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		3e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-25
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		6e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-11

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/368 (84%), Positives = 336/368 (91%), Gaps = 2/368 (0%)
Query: 1   MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFXX 60
           MSLRP+ R EVRRNRYKVAVDA+EGRRRREDNMVEIRK++REESLLKKRREGLQ+Q    
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  XXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
               + ++   KLESLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVP
Sbjct: 63  ASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           RFV+FL RED+PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQA
Sbjct: 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
           VWALGNVAGDSP+CRDLVL+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+
Sbjct: 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240
Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
           Q RPALPALA+L+HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP
Sbjct: 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 300
Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
           SVLIPALRTVGNIVTGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360
Query: 361 RDQIQVMI 368
           +DQIQ +I
Sbjct: 361 KDQIQAVI 368

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
           L+  +  ++  +A WAL+ ++ GT++  + VI+ G  P  V+LL  PS  V   A+  +G
Sbjct: 252 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311
Query: 186 N-VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP 244
           N V GD  + + ++  Q AL  LL+ L +  K S+ + A WT+SN   G      DQ++ 
Sbjct: 312 NIVTGDDAQTQCIIDHQ-ALPCLLSLLTQNLKKSIKKEACWTISNITAGNK----DQIQA 366
Query: 245 ALPA-----LAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
            + A     L  L+ + + ++  +A WA+S   S G++D+I+ ++  G    L +LL  P
Sbjct: 367 VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 426
Query: 299 SPSVLIPALRTVGNIV 314
              ++   L  + NI+
Sbjct: 427 DIRIVTVCLEGLENIL 442

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  541 bits (1394), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/294 (88%), Positives = 276/294 (93%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           SLPAM+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+C
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
           RDLVL+ GAL+PLLAQLNE  KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+H
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           TGDD QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQ +I
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 330

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/369 (55%), Positives = 251/369 (68%), Gaps = 13/369 (3%)
Query: 10  EVRRNRYKVA--VDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFXXXX 62
           E RR  +K      ADE RRRR+   VE+RK KR+E+L K+R      +G  S +     
Sbjct: 15  EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 74
Query: 63  XXSNLNLQTKLE-SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
             ++    ++L+  LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 75  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 134
Query: 122 FVEFLMREDYPQ-LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
            VEF MRE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA
Sbjct: 135 LVEF-MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPF 239
           +WALGNVAGDS   RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             V  ALP LA+L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
             V  PALR VGNIVTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAG 371
Query: 360 NRDQIQVMI 368
           N +QIQ +I
Sbjct: 372 NTEQIQAVI 380

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  338 bits (866), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/375 (49%), Positives = 242/375 (64%), Gaps = 8/375 (2%)
Query: 1   MSLRPNAR-AEVRRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQF 58
           MS   NA     R NR+K    D+ E RRRR +  VE+RK K++E +LK+R         
Sbjct: 1   MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDA 60
Query: 59  XXXXXXSNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV 118
                 +  N  T   S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G+
Sbjct: 61  TSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 120
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + E
Sbjct: 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 180
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK 234
           QAVWALGN+AG     RDLV+  GA+ PLLA L            LRN TWTLSN CR K
Sbjct: 181 QAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240
Query: 235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
            P PP D V   LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+
Sbjct: 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300
Query: 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353
           LLG     ++ PALR +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+
Sbjct: 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTM 359
Query: 354 SNITAGNRDQIQVMI 368
           SNITAG +DQIQ ++
Sbjct: 360 SNITAGRQDQIQQVV 374

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  335 bits (859), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 215/297 (72%), Gaps = 5/297 (1%)
Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
             RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           NIVTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 294

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 293

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/297 (60%), Positives = 215/297 (72%), Gaps = 5/297 (1%)
Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPE 59
Query: 134 -LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 192
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQ 251
             RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           NIVTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 NIVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 294

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 293

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  335 bits (858), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 180/295 (61%), Positives = 214/295 (72%), Gaps = 5/295 (1%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-L 134
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+WALGNVAGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLV 253
           RD VL   A+ P+L   N   K S++R ATWTLSN CRG KPQP +  V  ALP LA+L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           VTG+D QTQ +I  G LP  L LL  S K++IKKEACWTISNITAGN +QIQ +I
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  330 bits (847), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 178/292 (60%), Positives = 212/292 (72%), Gaps = 3/292 (1%)
Query: 79  MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
           VL    L PLL   +++ +L+M RNA W LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           DD QTQ I+   +    L  L  S K+SIKKEACWTISNITAGNR QIQ +I
Sbjct: 265 DDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  330 bits (846), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 180/292 (61%), Positives = 213/292 (72%), Gaps = 3/292 (1%)
Query: 79  MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 137
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 197
           +AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 256
           VL    L PLL   +++ +L+M RNA W LSN CRGK  PP F +V P L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           DD QTQ I+   AL   L  L  S K+SIKKEACWTISNITAGNR QIQ +I
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 312

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 355

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 355

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 341

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 355

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 331

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  317 bits (813), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 339

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  317 bits (813), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 311

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  317 bits (813), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 304

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  317 bits (813), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 305

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  317 bits (813), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 305

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 300

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 305

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  317 bits (812), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 304

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  317 bits (812), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 209/299 (69%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 300

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  314 bits (804), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 162/299 (54%), Positives = 206/299 (68%), Gaps = 6/299 (2%)
Query: 75  SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQL 134
           S+  +V G+ S +   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL R D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 194
           QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 195 RDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPAL 249
           RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 250 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
            +L+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LLG     ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ ++
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVV 306

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 8/230 (3%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LP M   + SDD   QL AT +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
            EA WAL+NIASG +E  + VID GA+P  V+LL+SP++ + ++A+WAL N+A       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KPQPPFDQVRPALPALAQL 252
             V+  GAL P L QL       +L+ A W LSN   G   + Q   D    ALPAL QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
           + S +E++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 8/234 (3%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+  + L  +D  Q Q  A    + I S  +E  + VID GA+P  V+LL+SP++ + +
Sbjct: 14  LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KP 235
           +A+WAL N+A         V+  GAL P L QL       +L+ A W LSN   G   + 
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
           Q   D    ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL
Sbjct: 132 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349
             P+  +L  AL  + NI +G + Q Q +   GAL  L  L +H ++K I+KEA
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 173 SDDVREQ--AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           SDD++EQ  A      +  D       V+  GAL P L QL       +L+ A W LSN 
Sbjct: 23  SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 231 CRG---KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
             G   + Q   D    ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG 
Sbjct: 82  ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
            P LV+LL  P+  +L  AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198
Query: 348 EACWTISNITAGNRDQIQVM 367
           EA W +SNI +G  +Q Q +
Sbjct: 199 EALWALSNIASGGNEQKQAV 218

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +QI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 365 QVMI 368
           Q +I
Sbjct: 174 QAVI 177

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 50/234 (21%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+ V+ L   D  +LQ  A   L+ IASG +E  + VID GA+P  V+LL+SP++    
Sbjct: 14  LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 69
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KP 235
                                                   +L+ A W LSN   G   + 
Sbjct: 70  ----------------------------------------ILQEALWALSNIASGGNEQI 89
Query: 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
           Q   D    ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL
Sbjct: 90  QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 296 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 349
             P+  +L  AL  + NI +G + Q Q +   GAL  L  L +H ++K I+KEA
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 200

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +Q 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QVM 367
           Q +
Sbjct: 174 QAV 176

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 54/245 (22%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+ V+ L   D  +LQ  A   L+ IASG +E  + VID GA+P  V+LL+SP++    
Sbjct: 14  LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--- 69
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
                                                   +L+ A W LSN   G     
Sbjct: 70  ----------------------------------------ILQEALWALSNIASGG---- 85
Query: 239 FDQVRP-----ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
            +Q++      ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 294 LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 353
           LL  P+  +L  AL  + NI +G + Q Q +   GA P L  L +  ++K I+KEA   +
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEK-IQKEAQEAL 204
Query: 354 SNITA 358
             I +
Sbjct: 205 EKIQS 209

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +Q 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QVM 367
           Q +
Sbjct: 174 QAV 176

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LP M   + SDD   QL AT +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
            EA WAL+NIASG +E  + VID GA+P  V+LL+SP++ + ++A+WAL N+A       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQLVH 254
             V+  GAL P L QL       +L+ A W LSN    G  Q    +   AL  L QL  
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 255 SNDEEVLTDACWALSYL 271
             +E++  +A  AL  L
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 1/123 (0%)
Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
           ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+ S  + I +EA W +SNI +G  +Q 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 365 QVM 367
           Q +
Sbjct: 174 QAV 176

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 6/244 (2%)
Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
           +A  AL N+A         ++  G  + +L +L       + + A   L+N   G P   
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEA 120
Query: 239 FDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG 296
              +  A  +  L +L+ S D EV  +A  AL+ ++ G ++ I+A+++AG    LV+LL 
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 297 HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
                V   A R + NI +G     + I+  G +  L  LLT +  + ++KEA   + NI
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE-VQKEAQRALENI 239
Query: 357 TAGN 360
            +G 
Sbjct: 240 KSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 221 RNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 278
           + A   L+    G P      +  A  +  L +L+ S D EV  +A  AL+ ++ G ++ 
Sbjct: 20  KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 279 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 338
           I+A+++AG    LV+LL      V   A R + NI +G D   + I+  G +  L+ LLT
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 339 HSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            +  + ++KEA   ++NI +G  + I+ ++
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIV 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-152
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-40
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-145
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-45
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-43
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-41
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-137
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-56
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-50
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-41
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-49
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-84
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-61
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-50
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-40
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-34
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-83
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-56
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-41
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-15
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-67
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-55
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-47
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-35
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-60
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-59
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-59
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-29
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-57
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-40
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-51
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-11
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-48
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-15
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-43
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-26
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-15
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-40
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-16
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-05
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	8e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	9e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  437 bits (1126), Expect = e-152
 Identities = 199/369 (53%), Positives = 248/369 (67%), Gaps = 11/369 (2%)

Query: 9   AEVRRNRYK--VAVDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFPPP 61
            E RR  +K      ADE RRRR+   VE+RK KR+E+L K+R      +G  S +    
Sbjct: 14  PEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDES 73

Query: 62  APASNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           + +++    ++L + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
           R VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF 239
           +WALGNVAGDS   RD VL   A+ P+L   N   K S++R ATWTLSN CRGK PQP +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             V  ALP LA+L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312

Query: 300 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 359
             V  PALR VGNIVTG+D QTQ +I  G LP L  LL+   K++IKKEACWTISNITAG
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG 371

Query: 360 NRDQIQVMI 368
           N +QIQ +I
Sbjct: 372 NTEQIQAVI 380

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  148 bits (375), Expect = 2e-40
 Identities = 65/299 (21%), Positives = 122/299 (40%), Gaps = 27/299 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +  ++    S+  SL   AT     L    + P  +  + S  +P   + +   D  +  
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNL-CRGKKPQPDWSVVSQALPTLAKLIYSMD-TETL 274

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
            +A WA++ ++ G  E  + VID       V+LL+  S  V+  A+ A+GN+   +    
Sbjct: 275 VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 334

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-----ALPALA 250
            +V++ G L P L  L    K ++ + A WT+SN   G      +Q++       +P L 
Sbjct: 335 QVVINAGVL-PALRLLLSSPKENIKKEACWTISNITAGNT----EQIQAVIDANLIPPLV 389

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLGHPSPSVLIPAL 307
           +L+   + +   +ACWA+S  S G   +   I+ ++  G    L +LL      ++   L
Sbjct: 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449

Query: 308 RTVGNIV-----------TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 355
             + NI+              +     I   G +  +     + + K I ++A   I  
Sbjct: 450 DALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDK-IYEKAYKIIET 507

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  419 bits (1078), Expect = e-145
 Identities = 171/363 (47%), Positives = 222/363 (61%), Gaps = 13/363 (3%)

Query: 11  VRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQ 70
           +  + +        G   R   M E    K E   +     G            SN    
Sbjct: 1   MHHHHHH-----SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTV 55

Query: 71  TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED 130
               S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL + D
Sbjct: 56  N--WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113

Query: 131 YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 190
              +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+AGD
Sbjct: 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173

Query: 191 SPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPA 245
               RDLV+  GA+ PLLA L            LRN TWTLSN CR K P PP D V   
Sbjct: 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 233

Query: 246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 305
           LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     ++ P
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293

Query: 306 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 365
           ALR +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +DQIQ
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQ 352

Query: 366 VMI 368
            ++
Sbjct: 353 QVV 355

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  161 bits (409), Expect = 2e-45
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 11/275 (4%)

Query: 102 LSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
           L   ++P         ++P  V  L+  + P++  ++ WA++ +  G +E  ++V+  G 
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275

Query: 162 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 221
           VP  VKLL +    +   A+ A+GN+   +      V+  GAL  +   L    K ++ +
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AVFPSLLTNPKTNIQK 334

Query: 222 NATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL-SDGTNDKI 279
            ATWT+SN   G+  Q         +P L  ++   D +   +A WA++   S GT ++I
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

Query: 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI------VTGDDFQTQCIITYGALPYL 333
             ++  G+   L+ LL      ++   L  + NI      +   +  +  I   G L  +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454

Query: 334 LGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
             L  H ++ S+ K +   I    +   ++ Q ++
Sbjct: 455 EALQRHENE-SVYKASLNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  155 bits (394), Expect = 3e-43
 Identities = 60/287 (20%), Positives = 115/287 (40%), Gaps = 9/287 (3%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +PA ++ + S  + +  +A      + + + S   + VI+ G +   +  L   D   L 
Sbjct: 145 IPAFISLLASPHAHISEQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 136 FE----AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
                   W L+N+    +    +      +P  V+LL     +V   + WA+  +    
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALA 250
               ++V+ +G  +P L +L    +L ++  A   + N   G  +     +   AL    
Sbjct: 264 NERIEMVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
            L+ +    +  +A W +S ++ G  D+IQ V+  G+ P LV +L          A   +
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 382

Query: 311 GNIVT-GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
            N  + G   Q   ++  G +  L+ LL+    K I +     ISNI
Sbjct: 383 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILDAISNI 428

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  150 bits (381), Expect = 2e-41
 Identities = 58/258 (22%), Positives = 115/258 (44%), Gaps = 11/258 (4%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LP +V  +  +D  +  ++      L +   +  IE V++ GVVP+ V+ L   +   + 
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIV 291

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
             A  A+ NI +GT E T+ VID GA+ +F  LL +P  +++++A W + N+        
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 351

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--PALPALAQLV 253
             V++ G L+P L  +  +A     + A W ++N+  G        +     +  L  L+
Sbjct: 352 QQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410

Query: 254 HSNDEEVLTDACWALSYL------SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307
            + D +++     A+S +         T      + E G   ++  L  H + SV   +L
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470

Query: 308 RTVGNIVTGDDFQTQCII 325
             +    + ++ + Q ++
Sbjct: 471 NLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  100 bits (250), Expect = 2e-23
 Identities = 39/220 (17%), Positives = 89/220 (40%), Gaps = 11/220 (5%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +P +V  + + +  +   A      +++       ++VI +G +  F   L+      +Q
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPS-LLTNPKTNIQ 333

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRC 194
            EA W ++NI +G  +  + V++HG VP  V +L+      +++A WA+ N   G +   
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393

Query: 195 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRP------ALP 247
              ++  G + PL+  L+      +++     +SN  +  +     +++         L 
Sbjct: 394 IVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
            +  L    +E V   +   +        ++ Q V+    
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  396 bits (1020), Expect = e-137
 Identities = 182/306 (59%), Positives = 219/306 (71%), Gaps = 3/306 (0%)

Query: 65  SNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFV 123
           +N+ +         M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RFV
Sbjct: 11  NNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 70

Query: 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183
           EFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL+S  +DV+EQAVWA
Sbjct: 71  EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130

Query: 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQV 242
           LGN+AGDS  CRD VL    L PLL   +++ +L+M RNA W LSN CRGK P P F +V
Sbjct: 131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
            P L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V
Sbjct: 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
           + PALR VGNIVTGDD QTQ I+   AL  LL LL+   K+SIKKEACWTISNITAGNR 
Sbjct: 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRA 309

Query: 363 QIQVMI 368
           QIQ +I
Sbjct: 310 QIQTVI 315

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  188 bits (478), Expect = 9e-56
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 7/287 (2%)

Query: 85  SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 144
            ++ +LQ E+      + +   S     VIQ+G VP F+E L   ++  +Q +A WAL N
Sbjct: 76  KENCTLQFESAWVLTNI-ASGNSLQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGN 133

Query: 145 IASGTSENTKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGA 203
           IA  ++     V+D   +P  ++L +  +   +   AVWAL N+        +       
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193

Query: 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEVLT 262
            + +L+ L   +   +L +A W LS    G        +       L +L+  ND +V++
Sbjct: 194 -LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252

Query: 263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 322
            A  A+  +  G + + Q ++       L+ LL  P  S+   A  T+ NI  G+  Q Q
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312

Query: 323 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVMI 368
            +I     P L+ +L  +  +  +KEA W I+N T+ G+ +QI+ ++
Sbjct: 313 TVIDANIFPALISILQTAEFR-TRKEAAWAITNATSGGSAEQIKYLV 358

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  172 bits (437), Expect = 8e-50
 Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 5/283 (1%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +P  +  + S+   +Q +A      + + + +   + V+   ++P  ++   +++   + 
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
             A WAL+N+  G S   +       + +   LL     DV   A WAL  ++       
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVH 254
             V+  G     L +L       ++  A   + N   G   Q        AL +L  L+ 
Sbjct: 228 QAVIDAGV-CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286

Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           S  E +  +ACW +S ++ G   +IQ VI+A + P L+ +L          A   + N  
Sbjct: 287 SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346

Query: 315 T-GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
           + G   Q + ++  G +  L  LLT    K I + A   + NI
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSK-IVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  148 bits (375), Expect = 6e-41
 Identities = 50/240 (20%), Positives = 98/240 (40%), Gaps = 16/240 (6%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           L  +   ++  D+ +  +A      L S   +  I+ VI +GV  R VE LM  D  ++ 
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRLVELLMHND-YKVV 251

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
             A  A+ NI +G    T+V+++  A+   + LL+SP + ++++A W + N+   +    
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLV 253
             V+    + P L  + + A+    + A W ++N   G        +     +  L  L+
Sbjct: 312 QTVIDAN-IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLL 370

Query: 254 HSNDEEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              D +++  A   L  +             G N     + EA    ++  L  H +  +
Sbjct: 371 TVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEI 430

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  136 bits (345), Expect = 1e-36
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 5/229 (2%)

Query: 144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA--GDSPRCRDLVLSQ 201
                   N ++          ++++ S S + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEV 260
           G +   +  L  +   ++   + W L+N   G        ++  A+P   +L+ S  E+V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDF 319
              A WAL  ++  +      V++  + P L++L    +  ++   A+  + N+  G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 320 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
             +       L  L  LL  S    +  +ACW +S ++ G  D+IQ +I
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVI 231

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  277 bits (711), Expect = 6e-93
 Identities = 90/252 (35%), Positives = 139/252 (55%), Gaps = 4/252 (1%)

Query: 65  SNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE 124
            + +       LP M   + SDD   QL AT +F ++LS + +  I+ VI +G +P  V+
Sbjct: 3   GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQ 61

Query: 125 FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL 184
            L   +  Q+  EA WAL+NIASG +E  + VID GA+P  V+LL+SP++ + ++A+WAL
Sbjct: 62  LLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 185 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR- 243
            N+A         V+  GA +P L QL       +L+ A W LSN   G  +     +  
Sbjct: 121 SNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 179

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
            ALPAL QL+ S +E++L +A WALS ++ G N++ QAV EAG   +L +L  H +  + 
Sbjct: 180 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 239

Query: 304 IPALRTVGNIVT 315
             A   +  + +
Sbjct: 240 KEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  164 bits (417), Expect = 8e-49
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 1/124 (0%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            LP + Q ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 365 QVMI 368
           Q +I
Sbjct: 132 QAVI 135

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  136 bits (345), Expect = 2e-38
 Identities = 65/172 (37%), Positives = 97/172 (56%), Gaps = 4/172 (2%)

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--PALPALAQLVHSN 256
              G+ +P + Q      +    +AT   S             V    ALPAL QL+ S 
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 316
           +E++L +A WALS ++ G N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QIQ +I
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVI 177

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  263 bits (673), Expect = 9e-84
 Identities = 51/301 (16%), Positives = 105/301 (34%), Gaps = 6/301 (1%)

Query: 63  PASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
            AS   +    + + A+V  + + +       T      LS  R      + +SG +P  
Sbjct: 48  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPAL 106

Query: 123 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVW 182
           V+ L       + F A   L N+          V   G +   V LL   +         
Sbjct: 107 VKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165

Query: 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242
            L  +A  +   + ++L+ G    L+  +       +L   +  L          P    
Sbjct: 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              + AL   +    + ++ +  W L  LSD    +       G+   LV+LLG    +V
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 282

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR 361
           +  A   + N+   +      +   G +  L+  +  +  ++ I + A   + ++T+ ++
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 362 D 362
           +
Sbjct: 343 E 343

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  205 bits (524), Expect = 1e-61
 Identities = 62/294 (21%), Positives = 106/294 (36%), Gaps = 8/294 (2%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +P +   +  +D  +  +A     +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVH 254
             V   G L  ++A LN+   +  L   T  L     G  +     +      AL  ++ 
Sbjct: 137 MAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
              D  T+     G L  L+ LL       +   A   +SN+T  N     ++ 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVC 305

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  175 bits (445), Expect = 3e-50
 Identities = 40/259 (15%), Positives = 92/259 (35%), Gaps = 6/259 (2%)

Query: 110 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 170 ASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228
            + +D +        L N++         +   G +  L+  L      S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 126

Query: 229 NFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
              LV ++   +   L+     V  +++        I+  G +  L   LT   ++ + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQ 245

Query: 348 EACWTISNITAGNRDQIQV 366
              WT+ N++     Q  +
Sbjct: 246 NCLWTLRNLSDAATKQEGM 264

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  169 bits (429), Expect = 6e-48
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 4/228 (1%)

Query: 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 260
              +  ++  +     +   R    TL N    +           +PAL +++ S  + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
              I+  G    L+ ++     + +       +  + +        ++
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIV 224

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  154 bits (390), Expect = 2e-42
 Identities = 52/319 (16%), Positives = 104/319 (32%), Gaps = 33/319 (10%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
             A+V  + +      L  T++  K+LS+  S     ++++G +       + +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 196 DLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVR----PALPALA 250
            +V   G +  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 311 GNIVTGDDFQT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEA 349
                 +  +                        I     +P  + LL    +  I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVA 480

Query: 350 CWTISNITAGNRDQIQVMI 368
              +  + A +++  + + 
Sbjct: 481 AGVLCEL-AQDKEAAEAIE 498

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  149 bits (377), Expect = 1e-40
 Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 13/299 (4%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           L  MVA +   +       T   + L +         ++ SG     V  +    Y +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
           +  +  L  ++   S N   +++ G +      L  PS  + +  +W L N++  +    
Sbjct: 204 WTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA---T 259

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLV- 253
                +G  +  L QL     ++++  A   LSN      +      +   + AL + V 
Sbjct: 260 KQEGMEGL-LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 254 -HSNDEEVLTDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLGHPSPSVLIPALRT 309
              + E++   A  AL +L+    +      AV      P +V+LL  PS   LI A   
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           +   +         +   GA+P L+ LL  +H+   ++      +        +++ ++
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD-TQRRTSMGGTQQQFVEGVRMEEIV 436

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  130 bits (329), Expect = 7e-34
 Identities = 59/286 (20%), Positives = 96/286 (33%), Gaps = 28/286 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQL 134
           L  +V  + SDD ++   A      L +         V Q G +   V  +    D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 135 QFEAAWALTNIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              A  AL ++ S   E       V  H  +P+ VKLL  PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
           P     +  QGA IP L QL  RA     R  +   +                       
Sbjct: 387 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQF 426

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           +     EE++     AL  L+   +++I  +      P  V+LL  P  ++   A   + 
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
            +    +   + I   GA   L  LL   ++  +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  266 bits (680), Expect = 1e-83
 Identities = 51/302 (16%), Positives = 105/302 (34%), Gaps = 6/302 (1%)

Query: 63  PASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF 122
            AS   +    + + A+V  + + +       T      LS  R      + +SG +P  
Sbjct: 45  EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPAL 103

Query: 123 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVW 182
           V+ L       + F A   L N+          V   G +   V LL   +         
Sbjct: 104 VKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162

Query: 183 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 242
            L  +A  +   + ++L+ G    L+  +       +L   +  L          P    
Sbjct: 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 222

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              + AL   +    + ++ +  W L  LSD    +       G+   LV+LLG    +V
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINV 279

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR 361
           +  A   + N+   +      +   G +  L+  +  +  ++ I + A   + ++T+ ++
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339

Query: 362 DQ 363
           + 
Sbjct: 340 EA 341

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  193 bits (492), Expect = 2e-56
 Identities = 63/295 (21%), Positives = 109/295 (36%), Gaps = 10/295 (3%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +P +   +  +D  +  +A     +L   E S     +    +V   V  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVH 254
             V   G  +  +  L  +  +  L   T  L     G  +     +      AL  ++ 
Sbjct: 134 MAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 255 S-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           +   E++L      L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
               D  T+     G L  L+ LL       +   A   +SN+T  N     ++ 
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVC 302

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  189 bits (481), Expect = 9e-55
 Identities = 42/259 (16%), Positives = 92/259 (35%), Gaps = 8/259 (3%)

Query: 110 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 170 ASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 228
            + +D +        L N++         +   G +  L+  L      S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123

Query: 229 NFCRGKPQPPFDQVRP--ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286
           N    +       VR    L  +  L++  + + L      L  L+ G  +    ++ +G
Sbjct: 124 NLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK 346
               LV ++   +   L+     V  +++        I+  G +  L   LT    + + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLV 241

Query: 347 KEACWTISNITAGNRDQIQ 365
           +   WT+ N++     Q  
Sbjct: 242 QNCLWTLRNLSDAATKQEG 260

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  158 bits (402), Expect = 1e-43
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 1/218 (0%)

Query: 151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ 210
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY 270
           +     +   R    TL N    +           +PAL +++ S  + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL 330
           L         AV  AG   ++V LL   +   L      +  +  G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
             L+ ++     + +       +  + +        ++
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIV 221

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  151 bits (383), Expect = 5e-41
 Identities = 53/319 (16%), Positives = 103/319 (32%), Gaps = 33/319 (10%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
             A+V  + +      L  T++  K+LS+  S     ++++G +      L      +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS-QRLV 241

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 196 DLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVRP----ALPALA 250
            +V   G +  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 311 GNIVTGDDFQT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEA 349
                 +  +                        I     +P  + LL    +  I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVA 477

Query: 350 CWTISNITAGNRDQIQVMI 368
              +  + A +++  + + 
Sbjct: 478 AGVLCEL-AQDKEAAEAIE 495

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  135 bits (342), Expect = 2e-35
 Identities = 58/297 (19%), Positives = 97/297 (32%), Gaps = 28/297 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-MREDYPQL 134
           L  +V  + SDD ++   A      L +         V Q G +   V  +    D   +
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 323

Query: 135 QFEAAWALTNIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              A  AL ++ S   E       V  H  +P+ VKLL  PS     +A   L       
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
           P     +  QGA IP L QL  RA     R  +   +                       
Sbjct: 384 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQF 423

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           +     EE++     AL  L+   +++   +      P  V+LL  P  ++   A   + 
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 482

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            +    +   + I   GA   L  LL   ++  +   A   +  ++       +  +
Sbjct: 483 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRL 537

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 13/189 (6%)

Query: 86  DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNI 145
               +    T     L     +     +     +P FV+ L+      +Q  AA  L  +
Sbjct: 428 RMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCEL 484

Query: 146 ASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALI 205
           A    E  + +   GA     +LL S ++ V   A   L  ++ D P+     LS     
Sbjct: 485 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC 265
            L               A   L    +G+P               +  HS          
Sbjct: 544 SLFRTEPMAWN----ETADLGLDIGAQGEPLG-----YRQDDPSYRSFHSGGYGQDALGM 594

Query: 266 WALSYLSDG 274
             +     G
Sbjct: 595 DPMMEHEMG 603

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335
           N +  A +     P L +LL      V+  A   V  +   +  +   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 336 LLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            + +++     +    T+ N+ + +R+ +  + 
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIF 95

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  225 bits (574), Expect = 3e-67
 Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 6/289 (2%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           + A+V  + + +       T+     LS  R   +  + +SG +P  V  L       + 
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKSGGIPALVNML-GSPVDSVL 251

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 255
            ++L+ G    L+  +       +L   +  L          P       + AL   +  
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371

Query: 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 315
             + ++ +  W L  LSD    +       G+   LV+LLG    +V+  A   + N+  
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428

Query: 316 GDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQ 363
            +      +   G +  L+  +  +  ++ I + A   + ++T+ ++D 
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  192 bits (490), Expect = 2e-55
 Identities = 44/297 (14%), Positives = 88/297 (29%), Gaps = 8/297 (2%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP- 132
           +            D   Q   T   R      R+    E +  G+     +F        
Sbjct: 67  QGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNV 121

Query: 133 QLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
           Q   E +  L +      +      +   A+P   KLL      V  +A   +  ++   
Sbjct: 122 QRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE 181

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
                ++ S   +  ++  +     +   R  + TL N    +           +PAL  
Sbjct: 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVN 241

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           ++ S  + VL  A   L  L         AV  AG   ++V LL   +   L      + 
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            +  G+      I+  G    L+ ++  ++           +  + +        ++
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 357

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  170 bits (433), Expect = 1e-47
 Identities = 53/319 (16%), Positives = 102/319 (31%), Gaps = 33/319 (10%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
             A+V  + +      L  T++  K+LS+  S     ++++G +      L      +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 377

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 196 DLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVR----PALPALA 250
            +V   G +  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 251 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 310
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 311 GNIVTGDDFQT---------------------QCIITYGALPYLLGLLTHSHKKSIKKEA 349
                 +  +                        I     +P  + LL    +  I++ A
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVA 613

Query: 350 CWTISNITAGNRDQIQVMI 368
              +  + A +++  + + 
Sbjct: 614 AGVLCEL-AQDKEAAEAIE 631

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  136 bits (343), Expect = 2e-35
 Identities = 58/297 (19%), Positives = 99/297 (33%), Gaps = 28/297 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQL 134
           L  +V  + SDD ++   A      L +         V Q G +   V  ++R  D   +
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 459

Query: 135 QFEAAWALTNIASGTSENTKV---VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              A  AL ++ S   +       V  H  +P+ VKLL  PS     +A   L       
Sbjct: 460 TEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
           P     +  QGA IP L QL  RA     R  +   +                       
Sbjct: 520 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQF 559

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           +     EE++     AL  L+   +++   +      P  V+LL  P  ++   A   + 
Sbjct: 560 VEGVRMEEIVEACTGALHILARDIHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 618

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            +    +   + I   GA   L  LL   ++  +   A   +  ++       +  +
Sbjct: 619 ELAQDKE-AAEAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRL 673

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 32/234 (13%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LP +V  +        ++AT    + L++  +     + + G +PR V+ L+R      Q
Sbjct: 490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAH-QDTQ 547

Query: 136 FEAAWALTNIA---------------------SGTSENTKVVIDHGAVPIFVKLLASPSD 174
              +   T                        +    N  V+     +P+FV+LL SP +
Sbjct: 548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607

Query: 175 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL---NERAKLSMLRNATWTLSNFC 231
           +++  A   L  +A D     + + ++GA  PL   L   NE         A   L    
Sbjct: 608 NIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVA----TYAAAVLFRMS 662

Query: 232 RGKPQPPFDQVRPAL-PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284
             KPQ    ++   L  +L +       E         +        +      
Sbjct: 663 EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYR 716

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  197 bits (503), Expect = 2e-60
 Identities = 53/300 (17%), Positives = 93/300 (31%), Gaps = 34/300 (11%)

Query: 91  QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS 150
           Q+ A  +          P +++              M          A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 151 ENTKVVIDHGAVPIFVKLLASPSD-----------DVREQAVWALGNVAGDSPRCRDLVL 199
           E+   + + G +    +LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--PALPALAQLV-HSN 256
           S    +  L    +     + +     L N            +R   ++ AL +      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 257 DEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP-------ALR 308
            E  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
            V +++  ++   Q +     L  LL  L  SH  +I   AC T+ N++A N    + + 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALW 302

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  195 bits (497), Expect = 1e-59
 Identities = 57/318 (17%), Positives = 105/318 (33%), Gaps = 24/318 (7%)

Query: 69  LQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-- 126
            +     +      + +        A     KL   E       + + G +    E L  
Sbjct: 27  QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQV 84

Query: 127 --------MREDYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPSDDVR 177
                          L+  A  ALTN+  G   N   +    G +   V  L S S+D++
Sbjct: 85  DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 144

Query: 178 EQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP- 235
           +     L N++       +  +   G++  L+    E  K S L++    L N       
Sbjct: 145 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204

Query: 236 -QPPFDQVRPALPALAQLV----HSNDEEVLTDACWALSYLSD---GTNDKIQAVIEAGV 287
            +     V  AL  L   +     +N   ++      L  +S       D  Q + E   
Sbjct: 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264

Query: 288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 347
              L++ L   S +++  A  T+ N+   +    + +   GA+  L  L+ HS  K I  
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAM 323

Query: 348 EACWTISNITAGNRDQIQ 365
            +   + N+ A    + +
Sbjct: 324 GSAAALRNLMANRPAKYK 341

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  196 bits (500), Expect = 5e-59
 Identities = 67/388 (17%), Positives = 121/388 (31%), Gaps = 49/388 (12%)

Query: 5   PNARAEVRRN-----RYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFP 59
                E R          +    D+ R RRE  ++ + +  R                  
Sbjct: 92  SRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE---------- 141

Query: 60  PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV 119
                     +     +      + +        A     KL   E       + + G +
Sbjct: 142 --------WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGL 191

Query: 120 PRFVEFL----------MREDYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKL 168
               E L                 L+  A  ALTN+  G   N   +    G +   V  
Sbjct: 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251

Query: 169 LASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT--- 224
           L S S+D+++     L N++       +  +   G++  L+    E  K S L++     
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311

Query: 225 WTLSNFCRGKPQPPFDQVRPALPALAQLV----HSNDEEVLTDACWALSYLSD---GTND 277
           W LS  C    +     V  AL  L   +     +N   ++      L  +S       D
Sbjct: 312 WNLSAHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 370

Query: 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 337
             Q + E      L++ L   S +++  A  T+ N+   +    + +   GA+  L  L+
Sbjct: 371 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430

Query: 338 THSHKKSIKKEACWTISNITAGNRDQIQ 365
            HS  K I   +   + N+ A    + +
Sbjct: 431 -HSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  116 bits (291), Expect = 4e-29
 Identities = 52/364 (14%), Positives = 110/364 (30%), Gaps = 78/364 (21%)

Query: 45  LLKKRREGLQSQQFPPPAPASNLN--LQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLL 102
           +         S    P      L   L TK+E + ++++ + + D   + + +   R LL
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLL 54

Query: 103 SIERSPPIEEVI-QSGVVPRFVEFLMRED-----------YPQLQFEAAWALTNIASGTS 150
           ++  S      + QSG +P  ++ L   D             + +  A+ AL NI     
Sbjct: 55  AMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP 114

Query: 151 ENTKVVIDHGAVPIFVKL------------------------LASPSDDVREQAVWALGN 186
           ++ +   +   + +  ++                        + +P +     AV  L  
Sbjct: 115 DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL 246
           ++ D    R  +   G  +  +A+L                              ++   
Sbjct: 175 LSFD-EEHRHAMNELGG-LQAIAEL------------------------------LQVDC 202

Query: 247 PALAQLVHSNDEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIP 305
                        +   A  AL+ L+ G    K       G    LV  L   S  +   
Sbjct: 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262

Query: 306 ALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
               + N+    D  ++  +   G++  L+       K+S  K     + N++A   +  
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322

Query: 365 QVMI 368
             + 
Sbjct: 323 ADIC 326

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  183 bits (467), Expect = 8e-57
 Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 3/206 (1%)

Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
           SP++ + ++A+WAL N+A         V+  GAL  L+  L+      +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 231 CRGKPQPPFDQVRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 289
             G  +     +   ALPAL QL+ S +E++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 290 RLVELLGHPSPSVLIPALRTVGNIVT 315
           +L +L  H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  177 bits (452), Expect = 1e-54
 Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 1/124 (0%)

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 304
            LP + Q ++S D++ L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
            AL  + NI +G + Q Q +I  GALP L+ LL+  +++ I +EA W +SNI +G  +QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 365 QVMI 368
           Q +I
Sbjct: 132 QAVI 135

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  140 bits (354), Expect = 5e-40
 Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 43/219 (19%)

Query: 150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA 209
             +         +P  V+ L SP     + A+  L  +A         V+  GAL     
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL----- 56

Query: 210 QLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS 269
                                                PAL QL+ S +E++L +A WALS
Sbjct: 57  -------------------------------------PALVQLLSSPNEQILQEALWALS 79

Query: 270 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA 329
            ++ G N++IQAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q +I  GA
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           LP L+ LL+  +++ I +EA W +SNI +G  +Q Q + 
Sbjct: 140 LPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQKQAVK 177

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  175 bits (445), Expect = 5e-51
 Identities = 42/265 (15%), Positives = 83/265 (31%), Gaps = 18/265 (6%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 239 FDQVRPALPALAQLV----------------HSNDEEVLTDACWALSYLSDGTNDKIQAV 282
            + +  ALP LA  V                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK 342
             +G+   L+  + +   +           +    +   +           L     +  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 343 KSIKKEACWTISNITAGNRDQIQVM 367
                  C++  +    N +    +
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPL 266

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 86.8 bits (214), Expect = 7e-19
 Identities = 40/278 (14%), Positives = 74/278 (26%), Gaps = 27/278 (9%)

Query: 116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL------ 169
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------KLSMLR 221
           +   D   E  +  L N++            Q       A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 222 NATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-- 278
           N    L       K              L  +  S  +  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 279 ---IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 335
                  ++    P++  LL   +  V+      + N+          ++     P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 336 LLTHSHKKSIKKE-----ACWTISNITAGNRDQIQVMI 368
           LLT     +   E     AC+T+ N+ A      +   
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYF 416

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.3 bits (210), Expect = 2e-18
 Identities = 45/333 (13%), Positives = 92/333 (27%), Gaps = 52/333 (15%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +  +V  + S + ++Q  A    R  L    +    E  +   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALR-NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP----------------SDDVREQ 179
            +    L N++S   +  K  +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM------LRNATWTLSNFCRG 233
           A   L N++      R  + +   LI  L    +    +       + N    L N    
Sbjct: 163 ATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR--- 290
                  +V      L     +   E  +  C++        N+    + E    P+   
Sbjct: 222 LDA----EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277

Query: 291 ----------LVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334
                      + L+G                  T    +          +    LP + 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 335 GLLTHSHKKSIKKEACWTISNIT--AGNRDQIQ 365
            LL   +   + +     +SN++        + 
Sbjct: 338 RLLQSGNSD-VVRSGASLLSNMSRHPLLHRVMG 369

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.9 bits (196), Expect = 1e-16
 Identities = 22/117 (18%), Positives = 45/117 (38%)

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 303
             +P   Q + S DE+      + + +         Q V + G   +LV+LL  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 304 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
             A   + N+V               +   + LL  +    I+K+    + N+++ +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 67.9 bits (165), Expect = 1e-12
 Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 43/240 (17%)

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
           P     L    +         G +S+ S   +                    +  S  + 
Sbjct: 227 PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIR 286

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASG-----TSENTKVVIDHGAVPIFVKLLASPSDD 175
            ++  + +          A AL N+ +      +  +  + +    +P   +LL S + D
Sbjct: 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSD 346

Query: 176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
           V       L N++      R +         +   L                        
Sbjct: 347 VVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLL------------------------ 380

Query: 236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
                              SN E++L+ AC+ +  L        +    + +   ++ L 
Sbjct: 381 ------------TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.8 bits (162), Expect = 3e-12
 Identities = 25/183 (13%), Positives = 51/183 (27%), Gaps = 21/183 (11%)

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEV 260
           G  IP   Q              + + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF 319
              A  AL  L   +                V LL    +  +       + N+ + D+ 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 QTQCIITYGALPYLLGLL---------------THSHKKSIKKEACWTISNITAG--NRD 362
           + +  +   ALP L   +                      +   A   + N+++    R 
Sbjct: 121 KEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 363 QIQ 365
            ++
Sbjct: 179 TMR 181

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 30  EDNMVEIRKNKREESLLKKRREGLQSQQFPPPA-PASNLNLQTKLESLPAMVAGVWSDDS 88
            +   E        +   K          P               +++   +  +     
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

Query: 89  SLQLEATTQFRKLLSIERSPPIEE-----VIQSGVVPRFVEFLMREDYPQLQFEAAWALT 143
              LEA     + L+  +            ++   +P+    L++     +    A  L+
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR-LLQSGNSDVVRSGASLLS 356

Query: 144 NIASGTSENTKVVIDHGAVPIFVKLLAS------PSDDVREQAVWALGNVAGDSPRCRDL 197
           N++         V+ +   P   +LL S       S+D+   A + + N+    P+    
Sbjct: 357 NMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

Query: 198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
             S   L  ++      A       A   LS+    K 
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  164 bits (416), Expect = 3e-48
 Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 3/238 (1%)

Query: 114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS 173
           + S  +P       +    Q +  A   L ++              G   +  + L + +
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 174 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 233
             +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   A + +S   R 
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 234 KPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292
           +       +R      L + +    +++   + + L  L  G  +    +   G+  +LV
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEAC 350
            L+           L  + ++VT      +          L  LL H  +   + E  
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.9 bits (225), Expect = 6e-21
 Identities = 22/176 (12%), Positives = 60/176 (34%), Gaps = 3/176 (1%)

Query: 85  SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 144
           +  + L+  A            +   E+V+  G + + +  L R+    ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 145 IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 204
           +           +      + ++ +      ++ ++ + L N+    P  +  + S G  
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM- 210

Query: 205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEV 260
           +  L  L          +    L +     PQ    + R     L +L+    + +
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPELGLEELLRHRCQLL 265

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 75.8 bits (186), Expect = 1e-15
 Identities = 20/126 (15%), Positives = 47/126 (37%)

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
           +P  P   +   + D++    A   L+ L +  ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
              A + +G          + ++  GAL  LL LL      +++ +A + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 363 QIQVMI 368
            +   +
Sbjct: 159 GLLQFL 164

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  158 bits (399), Expect = 1e-43
 Identities = 54/342 (15%), Positives = 102/342 (29%), Gaps = 56/342 (16%)

Query: 73  LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP 132
           +          W+  +  +  +      L S+ +  P     +   +P  +  L      
Sbjct: 7   IGEEVPSDQYYWAPLAQHERGSL---ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-D 62

Query: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDS 191
            ++  AA  L ++     +    V     +P+ V LL  P  +V   A  AL N++ G  
Sbjct: 63  AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
              +  + +   +  L+  L +   + +    T TL N          + V  AL AL  
Sbjct: 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN-LSSHDSIKMEIVDHALHALTD 181

Query: 252 LV------------------HSNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLV 292
            V                  H   E VLT+    L  +S   ++  + + E  G+   L+
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241

Query: 293 ELLGH-------------------------------PSPSVLIPALRTVGNIVTGDDFQT 321
            ++                                  +      A     N  T      
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301

Query: 322 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 363
           + +     +   + LL  S   +I + +   I N+ AG    
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY 343

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  109 bits (273), Expect = 2e-26
 Identities = 60/346 (17%), Positives = 122/346 (35%), Gaps = 58/346 (16%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LP ++A +     +++  A    + L          +V +   +P  V  L+     ++ 
Sbjct: 50  LPEVIAMLGFRLDAVKSNAAAYLQHL-CYRNDKVKTDVRKLKGIPVLVG-LLDHPKKEVH 107

Query: 136 FEAAWALTNIASGTSENTKV-VIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPR 193
             A  AL NI+ G  ++ K+ + +   VP  V+LL    D D+ E     L N++     
Sbjct: 108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167

Query: 194 CRDLV------LSQGALIPLLAQLNERAK---------LSMLRNATWTLSNFCRGKP--Q 236
             ++V      L+   +IP      E  +          S+L N    L N    +   +
Sbjct: 168 KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEAR 227

Query: 237 PPFDQVRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK------------ 278
               +    + AL  +V +      +D +++ +    L  LS   + +            
Sbjct: 228 RKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287

Query: 279 -------------IQAVIEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDFQT--- 321
                         + + +  V    + LL     P++L  +   + N+  G        
Sbjct: 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347

Query: 322 -QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV 366
              +    AL  +  LLT+ H++ + K A   + N+    R++  +
Sbjct: 348 RSALRQEKALSAIADLLTNEHER-VVKAASGALRNLAVDARNKELI 392

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 86.2 bits (212), Expect = 1e-18
 Identities = 49/355 (13%), Positives = 99/355 (27%), Gaps = 66/355 (18%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +P +V  +      + L A    + +           +     VP  V  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP------------------SDDVR 177
                 L N++S   ++ K+ I   A+      +  P                   + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL------NERAKLSMLRNATWTLSNFC 231
                 L NV+ +    R  +     L+  L  +       + +   ++ N    L N  
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 232 RGKPQPPFDQVRP--------------------------ALPALAQLV-HSNDEEVLTDA 264
               +      R                            +     L+  S    +L  +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 265 CWALSYLSDGT----NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320
             A+  L  G          A+ +      + +LL +    V+  A   + N+      +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387

Query: 321 TQCIITYGALPYLLGLLTHSHKKSIKK-------EACWTISNITAGNRDQIQVMI 368
            + +I   A+P L+  L    + S              TI+ + A N +  + + 
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR 442

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 41/239 (17%)

Query: 68  NLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM 127
           N    L +L   V       +    EA            +   E + Q  VV  ++  L 
Sbjct: 260 NCVCLLRNLSYQVHRE-IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 128 REDYPQLQFEAAWALTNIASGT----SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183
               P +   +A A+ N+ +G           +    A+     LL +  + V + A  A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243
           L N+A D+      ++ + A+  L+  L                                
Sbjct: 379 LRNLAVDARNKE--LIGKHAIPNLVKNLPG------------------------------ 406

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
                      +  E+ +      ++ +     +  + + E     +LV +    + S 
Sbjct: 407 ----GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 77.3 bits (189), Expect = 1e-15
 Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 48/273 (17%)

Query: 130 DYPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLAS------PSDDVREQAVW 182
           ++  +    A  L N++S  SE  + + +  G V   + ++ +          + E  V 
Sbjct: 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263

Query: 183 ALGNVAGD-------------------------SPRCRDLVLSQGALIPLLAQLNERAKL 217
            L N++                             R  +L+     +   ++ L E    
Sbjct: 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323

Query: 218 SMLRNATWTLSNFCRGKPQPPFDQVRP-----ALPALAQLVHSNDEEVLTDACWALSYLS 272
           ++L  +   + N C G+               AL A+A L+ +  E V+  A  AL  L+
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383

Query: 273 DGTNDKIQAVIEAGVCPRLVELL--------GHPSPSVLIPALRTVGNIVTGDDFQTQCI 324
              + + + +I     P LV+ L         + S   +I  L T+  ++  +    + +
Sbjct: 384 --VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441

Query: 325 ITYGALPYLLGLLTHSHKKS-IKKEACWTISNI 356
                +  L+ +    ++     + A   +  I
Sbjct: 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 49.6 bits (117), Expect = 9e-07
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 12/126 (9%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL-------MR 128
           L A+   + ++   +   A+   R L         +E+I    +P  V+ L         
Sbjct: 357 LSAIADLLTNEHERVVKAASGALRNLA---VDARNKELIGKHAIPNLVKNLPGGQQNSSW 413

Query: 129 EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ--AVWALGN 186
                        +  + +   E  K + +   +   V +  S +   +E   A   L  
Sbjct: 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473

Query: 187 VAGDSP 192
           + G   
Sbjct: 474 IWGYKE 479

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (354), Expect = 6e-40
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 119 VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237
                AL N+  +    +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 238 PFDQVRPALPALAQLV----------------HSNDEEVLTDACWALSYLSDGTNDKIQA 281
               +  AL  L + +                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 282 VIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           +    G+   LV  +            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 77.3 bits (190), Expect = 1e-16
 Identities = 17/129 (13%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 241 QVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
           +  V       + N+V  D+     +     +P LL +L  +     KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 359 GNRDQIQVM 367
            ++ +  ++
Sbjct: 125 NDKLKNLMI 133

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 61.1 bits (148), Expect = 6e-11
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 43/207 (20%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           +  ++  +   +  +Q       R  L  E +    EV +   VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
            +    L N++S   +  K ++   A+    + +  P       + W  G+         
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPF------SGWPEGD--------- 155

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP---ALPALAQL 252
                         + N      +  N T  L N            +R     + +L   
Sbjct: 156 ------------YPKANGLLDFDIFYNVTGCLRNMSSAGADGR-KAMRRCDGLIDSLVHY 202

Query: 253 VHSNDEEVLTDA-------C--WALSY 270
           V     +   D        C    LSY
Sbjct: 203 VRGTIADYQPDDKATENCVCILHNLSY 229

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  134 bits (338), Expect = 8e-35
 Identities = 48/361 (13%), Positives = 105/361 (29%), Gaps = 45/361 (12%)

Query: 44  SLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLS 103
            L K    G Q     P    + L L                 D  ++  A       L+
Sbjct: 353 GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP----GKDKDIRRWAADGLA-YLT 407

Query: 104 IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-------------- 149
           ++     + +     +   ++     +     +       N+ +                
Sbjct: 408 LDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAK 466

Query: 150 ------------------SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
                             ++   V+ + G       L  + S + +E     L  V G  
Sbjct: 467 FAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL- 525

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRP--ALPA 248
              R  V+ +G +  LL    E  +    R+AT  L+       P+  F   R    +  
Sbjct: 526 KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRP 584

Query: 249 LAQLVHSNDEEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307
           L  L+  +   +   ++  AL+ L+       Q +I+     ++   L      +   A 
Sbjct: 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644

Query: 308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367
           + + N+V  +D           + +L  L     ++         ++ IT+ +    + +
Sbjct: 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE-TATACAGALAIITSVSVKCCEKI 703

Query: 368 I 368
           +
Sbjct: 704 L 704

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  119 bits (299), Expect = 1e-29
 Identities = 36/320 (11%), Positives = 91/320 (28%), Gaps = 48/320 (15%)

Query: 88  SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 147
            S    A+    ++         +       +  +++  +     + +     A+T + +
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLN 276

Query: 148 GTSE-NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP 206
           G  +   +VV   G + + + +  +  +  +  A   L   +         +  QG  + 
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VD 333

Query: 207 LLAQLNERAKLSMLRNATWTLSNFC-----RGKPQPPFDQVRPALPALAQ---LVHSNDE 258
           +L +L       +   A   L             +P  D     L    +   +    D+
Sbjct: 334 ILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDK 393

Query: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318
           ++   A   L+YL+     K + + +      L++L    + S L   + T  N+    +
Sbjct: 394 DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453

Query: 319 FQT--------------------------------QCIITYGALPYLLGLLTHSHKKSIK 346
            Q                                   +   G    L  L       + +
Sbjct: 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQ 512

Query: 347 KEACWTISNITAG--NRDQI 364
           +     ++ +      R ++
Sbjct: 513 ELIARVLNAVCGLKELRGKV 532

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  117 bits (293), Expect = 7e-29
 Identities = 55/327 (16%), Positives = 110/327 (33%), Gaps = 12/327 (3%)

Query: 32  NMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLES---LPAMVAGVWSDDS 88
           N  E ++   E   L K  +    ++             T L +     A+ A   ++  
Sbjct: 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESH 509

Query: 89  SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 148
           + Q         +  ++      +V+Q G V   +  +  E   + +  A  AL  I   
Sbjct: 510 NSQELIARVLNAVCGLKEL--RGKVVQEGGVKALLR-MALEGTEKGKRHATQALARIGIT 566

Query: 149 TSENTKVV--IDHGAVPIFVKLLASPSDDV-REQAVWALGNVAGDSPRCRDLVLSQGALI 205
            +             +   + LL      +   +++ AL N+A  +   R  ++ +  + 
Sbjct: 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVS 626

Query: 206 PLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDA 264
            +   L E   L + R A   L N    +     F+     +  LA L    DEE  T  
Sbjct: 627 KIEYYLMED-HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATAC 685

Query: 265 CWALSYLSDGTNDKIQAVIE-AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 323
             AL+ ++  +    + ++  A     L  L+ +PSP+V    +  + N++   +   + 
Sbjct: 686 AGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKK 745

Query: 324 IITYGALPYLLGLLTHSHKKSIKKEAC 350
           +     +  L GL         K    
Sbjct: 746 LFETDIMELLSGLGQLPDDTRAKAREV 772

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  116 bits (291), Expect = 1e-28
 Identities = 33/263 (12%), Positives = 71/263 (26%), Gaps = 7/263 (2%)

Query: 110 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 169
           I  +   G+       L + +    Q   A  L  +  G  E    V+  G V   +++ 
Sbjct: 488 ITVLANEGITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMA 545

Query: 170 ASPSDDVREQAVWALGN--VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 227
              ++  +  A  AL    +  +         S   + PLL  L +         +   L
Sbjct: 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 228 SNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286
           +N            ++   +  +   +  +   +   A   L  L    +          
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665

Query: 287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSI 345
               L  L               +  I +      + I+     L  L  L+ +     +
Sbjct: 666 RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA-V 724

Query: 346 KKEACWTISNITAGNRDQIQVMI 368
           +      I N+     +  + + 
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLF 747

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 88.8 bits (219), Expect = 2e-19
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 4/233 (1%)

Query: 63  PASNLNLQTKLESLPAMVAGVWSDDSSLQ-LEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
           P  + + Q  L+ +  ++  +  D ++L+  E+      L S+  +  + + I       
Sbjct: 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM--NESVRQRIIKEQGVS 626

Query: 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181
            +E+ + ED+  L   AA  L N+            ++  V     L     ++      
Sbjct: 627 KIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686

Query: 182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 241
            AL  +   S +C + +L+  + + +L  L      ++       + N      +     
Sbjct: 687 GALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKL 746

Query: 242 VRP-ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 293
                +  L+ L    D+        A   L+     +I    +    P +  
Sbjct: 747 FETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 87.8 bits (217), Expect = 3e-20
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 27/241 (11%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
             L  ++  +  D  ++   A      ++ I ++      +   ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNA---ISIIMVIAKTRE---DLYEPMLKKLFSLLKKSEAIP 85

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
           L  E A A   +A    E  K +I     P+         +  +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253
               ++     + +L+  N   KL+ L        NF     +  F  V P LP +  L+
Sbjct: 141 LMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLL 190

Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
           H  DE V   A  AL +L+   +   + VI      + +E L   S  V       +  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 314 V 314
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 69.0 bits (168), Expect = 1e-13
 Identities = 31/201 (15%), Positives = 72/201 (35%), Gaps = 20/201 (9%)

Query: 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
           V+ + +E L  +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 237
           ++   A G +A + P          ++IP+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 297
               +   +     ++ S + E    A   +  + + +   +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 298 PSPSVLIPALRTVGNIVTGDD 318
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 46/245 (18%), Positives = 77/245 (31%), Gaps = 57/245 (23%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  ALG +  +            A+ PL+  L +     + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKALKDEDGW-VRQSAAVALGQI--GDER-- 112

Query: 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 358
              V   A   +G I  G +              +  L         +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 359 GNRDQ 363
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 45/199 (22%)

Query: 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL 217
           D   V +++K L   S  VR  A +ALG +     R  +       LI  L   +   + 
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKALKDEDAWVR- 67

Query: 218 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 277
              R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 68  ---RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 278 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 337
             +  +E      L++ L      V I A   +G I  GD+          A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 338 THSHKKSIKKEACWTISNI 356
                  +++ A   +  I
Sbjct: 153 KDED-GWVRQSAADALGEI 170

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 20/91 (21%)

Query: 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
            V   ++ L +++   ++  AA+AL  I            D  AV   +K L      VR
Sbjct: 113 AVEPLIKAL-KDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVR 160

Query: 178 EQAVWALGNVAGDSPRCRDLVLSQGALIPLL 208
           + A  ALG + G+          + A+  L 
Sbjct: 161 QSAADALGEIGGER--------VRAAMEKLA 183

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 58.6 bits (142), Expect = 8e-12
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 12 RRNRYK-VAVDADEGRRRREDNMVEIRKNKREESLLKKRR 50
          R +R+K    D+ E RRRR +  VE+RK K+++ +LK+R 
Sbjct: 3  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 32/256 (12%), Positives = 71/256 (27%), Gaps = 52/256 (20%)

Query: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160
           L +  +    +E+ +          L+ +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
           AV + ++  +  +   R+   + LG +     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340
                   P L+ LL  P+  V   A   +      +                + +L   
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 341 HKKSIKKEACWTISNI 356
           + + ++ EA   +S  
Sbjct: 205 N-EEVRIEAIIGLSYR 219

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 42/189 (22%)

Query: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160
           + S  +      +    +V +       +    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
            +P+ + LL  P+ DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 221 RNATWTLSNFCRGKPQPPF------DQVRP-------------ALPALAQLV-HSNDEEV 260
             A   LS     +           + V                LP L  ++   +D E+
Sbjct: 210 IEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEI 269

Query: 261 LTDACWALS 269
           +T A   L 
Sbjct: 270 ITSAIDKLK 278

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 44/238 (18%), Positives = 75/238 (31%), Gaps = 57/238 (23%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  ALG +  +            A+ PL+  L +     + ++A   L     G  +  
Sbjct: 64  AAADALGQIGDER-----------AVEPLIKALKDEDG-WVRQSAAVALGQI--GDER-- 107

Query: 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 298
                 A+  L + +   D  V   A +AL  + D      +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 299 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
              V   A   +G I  G +              +  L         +K A   +   
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 36/220 (16%), Positives = 62/220 (28%), Gaps = 55/220 (25%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG---------------- 117
           E +   +  +  D   ++  A     K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 118 ---VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSD 174
               V   ++ L  ED   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIKALKDED-GWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 175 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRG 233
            VR  A +ALG +  +            A+ PL+  L +      +R +A   L      
Sbjct: 122 FVRIAAAFALGEIGDER-----------AVEPLIKALKDED--GWVRQSAADALGEI--- 165

Query: 234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 273
                         A+ +L  +        A   L     
Sbjct: 166 -------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 76/196 (38%)

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
            V +++K L   S  VR  A +A                        L ++ +       
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYA------------------------LGKIGDER----- 45

Query: 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280
                                   A+  L + +   D  V   A  AL  + D      +
Sbjct: 46  ------------------------AVEPLIKALKDEDAWVRRAAADALGQIGD------E 75

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 340
             +E      L++ L      V   A   +G I  GD+          A+  L+  L   
Sbjct: 76  RAVEP-----LIKALKDEDGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDE 119

Query: 341 HKKSIKKEACWTISNI 356
               ++  A + +  I
Sbjct: 120 D-WFVRIAAAFALGEI 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 44/287 (15%), Positives = 100/287 (34%), Gaps = 63/287 (21%)

Query: 61  PAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
            A   N + +   +   ++++    D   +  +A +   +L     S   EE++Q     
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQ----- 80

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIAS---GTSENTKVVID-----HGAVPIFVKLLASP 172
           +FVE ++R +Y        + ++ I +     S  T++ I+     +    +F K     
Sbjct: 81  KFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---- 129

Query: 173 SDDV-REQAVWALGNVAGDSPRCRDLVLSQG-------ALIPLLAQLNERAKLSMLRNAT 224
             +V R Q    L     +    +++++  G        +   +   + + +  M     
Sbjct: 130 --NVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL-SYKVQCKMDFKIF 185

Query: 225 W-TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE--VLTDACWALSYLSDGTNDKIQA 281
           W  L N C        +     L  L +L++  D      +D    +         +++ 
Sbjct: 186 WLNLKN-C--------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR- 235

Query: 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC--IIT 326
                   RL++   + +  +L+  L  V N    + F   C  ++T
Sbjct: 236 --------RLLKSKPYEN-CLLV--LLNVQNAKAWNAFNLSCKILLT 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 63/401 (15%), Positives = 113/401 (28%), Gaps = 139/401 (34%)

Query: 4   RPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKN-KREESLLKKRREGLQSQQFPPPA 62
                + + R  Y    D     R   DN V  + N  R +    K R+ L   +     
Sbjct: 101 EQRQPSMMTR-MYIEQRD-----RLYNDNQVFAKYNVSRLQ-PYLKLRQALLELR----- 148

Query: 63  PASNLNLQTKL----ESLPAMVA-----------GV-W-------SDDSSLQLEAT--TQ 97
           PA N+ +   L      +   V             + W       S ++ L++      Q
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 98  FRKLLS--IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155
                +   + S  I+  I S +       L  + Y          L            +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN-------CL------------L 248

Query: 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA------------ 203
           V+                 +V+    W   N+      C+ L+ ++              
Sbjct: 249 VL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTT 287

Query: 204 ---LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQVRPALP-ALAQLVHSND 257
              L      L      S+L             +PQ  P   +V    P  L+ +  S  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDC-------RPQDLPR--EVLTTNPRRLSIIAESIR 338

Query: 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGV---CP----RLVELLGHPSPSVLIPA--LR 308
           + + T   W          DK+  +IE+ +    P    ++ + L    PS  IP   L 
Sbjct: 339 DGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 309 TV-GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS-IKK 347
            +  +++  D                  ++   HK S ++K
Sbjct: 394 LIWFDVIKSDVMV---------------VVNKLHKYSLVEK 419

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 8/212 (3%)

Query: 110 IEEVIQSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166
           +  V +  ++P  +  L   +      ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT 226
           + L+     VR    W L   A            +  +  LL ++ +  K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 227 LSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEA 285
            +             +   L  L         + L     A+  L+D   +   +     
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ 525

Query: 286 GVCPRLVELLG--HPSPSVLIPALRTVGNIVT 315
            + P L++           L P L  + ++ T
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 16/236 (6%)

Query: 85  SDDSSLQLEATTQFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA 141
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 59  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 113

Query: 142 LTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD---LV 198
           +T IAS              +P    LL S   +  E A  AL  +  DS    D   L 
Sbjct: 114 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 169

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 258
                +IP   Q  + +   +  +A   ++ F   + Q     +   +  L  L    + 
Sbjct: 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP 229

Query: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
           EV  + C AL  L +   D++   +   +   +++       +V + A      + 
Sbjct: 230 EVRKNVCRALVMLLEVRMDRLLPHMHN-IVEYMLQRTQDQDENVALEACEFWLTLA 284

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 32/285 (11%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERS---PPIEEVIQSGVVPRFVEFLMREDYP 132
           +  + A    ++  ++         LL +      P +  +++      ++    ++   
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE------YMLQRTQDQDE 270

Query: 133 QLQFEAAWALTNIA-SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
            +  EA      +A     ++  V      +P+ V  +     D+        G   GD 
Sbjct: 271 NVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330

Query: 192 PRCRDLVLSQGA-LIPLLAQLNERAKL--------SMLRNATW--------TLSNFCRGK 234
                 +    A  + +LA +     L         +L +  W         L     G 
Sbjct: 331 TISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC 390

Query: 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
            Q     +   +P L Q +      V +  CW LS  +     +        +   L++ 
Sbjct: 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450

Query: 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
           +   +  V   A      +    +     ++ Y  L Y+L  L  
Sbjct: 451 ILDSNKRVQEAACSAFATLE---EEACTELVPY--LAYILDTLVF 490

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 32/228 (14%), Positives = 83/228 (36%), Gaps = 9/228 (3%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLS----IERSPPIEEVIQSGVVPRFVEFLMREDY 131
           +  +   + SD   L+  ++   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
             +Q EA   + ++ S       V      +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
             C ++V     +  LL++L++   +S  R     ++   R       + +   +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
             + +D+E+      A          ++   +   +   L  L   P+
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 310

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 37/282 (13%), Positives = 93/282 (32%), Gaps = 25/282 (8%)

Query: 76   LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
            L  +   V+S  ++L  + +           +    +   + V     +         ++
Sbjct: 776  LRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR 835

Query: 136  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
              A  +L  +      + ++ +      + ++  +SPS++V+  A +ALG+++  +    
Sbjct: 836  LLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYALGSISVGNLPE- 890

Query: 196  DLVLSQGALIPLLAQLNERAKLS-MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
                    L  +L ++  + K   +L ++   + +        P+  V      L +   
Sbjct: 891  -------YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--VENIWALLLKHCE 941

Query: 255  SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 314
              +E         L         K+  +    + PRL   L   S       +  V   +
Sbjct: 942  CAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTI 993

Query: 315  TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
            + D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 994  S-DHPQPIDPLLKNCIGDFLKTLEDPD-LNVRRVALVTFNSA 1033

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 23/233 (9%)

Query: 112 EVIQSGVVPRFVEFL---MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 168
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS--MLRNATWT 226
           +   S  V+E   W +G +A       + +  Q  L  ++       +    +  N +WT
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWT 476

Query: 227 LSNFCRGKPQPPFDQVRPALPA-LAQLVHS-----NDEEVLTDACWALSYLSDGTNDKIQ 280
           + N      +     +    PA +  L+ +     N+      A  AL+ + +   D + 
Sbjct: 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL 333
               + +   +++         L   +    N +T +D Q+   +    L  L
Sbjct: 537 ETSAS-ISTFVMD--------KLGQTMSVDENQLTLEDAQSLQELQSNILTVL 580

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 44/303 (14%), Positives = 86/303 (28%), Gaps = 25/303 (8%)

Query: 76  LPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           L A+V G  S ++S  ++L A       L   ++    E  ++ ++    E    ED  +
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IE 239

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
           +Q  A   L  I S      K  ++     + +  + SP+D V    V     +  +   
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299

Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN-------------------FCRGK 234
               +                +   ++ N    L+                         
Sbjct: 300 IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359

Query: 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
                  + P L  + Q + +++      A  A   + DG +   +        P ++ L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTI 353
           +   S  V       +G I                   +   L        +     WTI
Sbjct: 420 MNDQSLQVKETTAWCIGRIAD--SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTI 477

Query: 354 SNI 356
            N+
Sbjct: 478 INL 480

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
               +  ++  D   L++  A+ +    +GT  N+ V        +    ++  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            AV ALG V                +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
                 A+  L  L     + V   A  ALS +     +K+   +  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 13/215 (6%)

Query: 69  LQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR 128
                 +L  ++     DD + +L A     ++L    S     V++   +  F+   + 
Sbjct: 28  ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALS 85

Query: 129 EDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG--N 186
           ++  ++  +A  AL  +       +K  +   A    V LL SP D +R + +  L    
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQ------LNERAKLSMLRNATWTLSNFCRGKPQPPFD 240
              DS   R  +        L  +             S        + +      Q   +
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNE 203

Query: 241 QVR-PALPALAQLVHSNDEEVLTDACWALSYLSDG 274
            +   AL  L + +     E +      +S + DG
Sbjct: 204 FIVELALDVLEKALSFPLLENVKIELLKISRIVDG 238

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.8 bits (118), Expect = 9e-07
 Identities = 44/308 (14%), Positives = 96/308 (31%), Gaps = 28/308 (9%)

Query: 58  FP-PPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS 116
           +P      S + L   L  L      V+ +      +      +LLS      I+E +++
Sbjct: 240 YPSLTTLCSEIFLTKGLSKL--FKKRVFEEQDLQFTKELL---RLLSSA---CIDETMRT 291

Query: 117 GVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
            +   +++ L R  +   +Q  +A  L    S T      +       IF+  ++     
Sbjct: 292 YITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVP 349

Query: 176 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 235
             E +V AL  ++  +     +  ++     LL  +  +     L      ++N      
Sbjct: 350 KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE 409

Query: 236 QPPFDQVRPALPALAQL-----VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290
           +                           E             D      + ++   +   
Sbjct: 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYILRTELISF 461

Query: 291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH--SHKKSIKKE 348
           L   + + SP+     +R + NI    +F  Q +   GA+  +L  L +     + I+  
Sbjct: 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRIL 520

Query: 349 ACWTISNI 356
            C  ++ +
Sbjct: 521 GCRALTRM 528

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 146
           D+   L A T      + +     + ++ + V    +E LM ++   LQ      ++N+ 
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

Query: 147 SGTSENTKVVIDHG------AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 200
           S          +           I VKLL     + +        N+A   P     +L+
Sbjct: 635 SHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694

Query: 201 QGALIPLLAQL--NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253
           +  LI    Q+  ++   + + +             P    ++V P L    +L 
Sbjct: 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 36/144 (25%)

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
            M ++   ++ + + AL+ +               A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR-NATWTLSNFCRGKPQPPFDQVRP 244
           N              + A+ PL+  L + +    +R  A  +L     G  +        
Sbjct: 68  NFQ-----------DERAVEPLIKLLEDDS--GFVRSGAARSLEQI--GGER-------- 104

Query: 245 ALPALAQLVHSNDEEVLTDACWAL 268
              A+ +L  +        A   L
Sbjct: 105 VRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 25/118 (21%)

Query: 74  ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
             L    + +  ++  ++ + +T   ++         E +++           +  +  +
Sbjct: 12  SGLVPRGSHMADENKWVRRDVSTALSRM----GDEAFEPLLE----------SLSNEDWR 57

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
           ++  AAW + N             D  AV   +KLL   S  VR  A  +L  + G+ 
Sbjct: 58  IRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVR 177
            V   ++ L  +D   ++  AA +L  I                     KL  + +   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 178 EQAVWALG 185
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 24/114 (21%)

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              L      +   ++ V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
              A   +GN    D+          A+  L+ LL       ++  A  ++  I
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQI 100

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 15/252 (5%)

Query: 64  ASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV 123
           +   +          +V  +   D      +      +     S  ++  +       F 
Sbjct: 115 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFR 170

Query: 124 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWA 183
             L  +D P ++  AA  L   A     +    +    +P+F  L +   D VR  AV A
Sbjct: 171 N-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEA 226

Query: 184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 243
             N+A   P+     L    L       + R +  +        +     K   P     
Sbjct: 227 CVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADK----FTELQ--KAVGPEITKT 280

Query: 244 PALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSV 302
             +PA   L+   + EV   A   +    +  + D  + VI + + P + EL+   +  V
Sbjct: 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHV 340

Query: 303 LIPALRTVGNIV 314
                  +  + 
Sbjct: 341 KSALASVIMGLS 352

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 17/227 (7%)

Query: 76  LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQ 135
           LP  +A +  +   ++L        L  +     I ++ QS ++P  VE L  +   +++
Sbjct: 365 LPLFLAQLKDECPEVRLNI---ISNLDCVNEVIGIRQLSQS-LLPAIVE-LAEDAKWRVR 419

Query: 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 195
                 +  +A           D     + +  L      +RE A   L  +        
Sbjct: 420 LAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV----EKF 472

Query: 196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 255
               +   +IP +  ++            + ++       Q    +    LP + ++   
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH--MLPTVLRMAGD 530

Query: 256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
               V  +   +L  +    ++     +++ V P L +L       V
Sbjct: 531 PVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDV 574

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 39/286 (13%), Positives = 87/286 (30%), Gaps = 24/286 (8%)

Query: 98  FRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 157
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAK 216
               V + + LL      VR   V  L ++      + + ++L     +  L  L   ++
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 217 LSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVH----SNDEEVLTDACWALSYL 271
             +  +    L    R             A   L  ++     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 272 SDGTNDKIQAVIEAGVCPRLVELLGHPSP---------SVLIPALRTVGNIVTGDDFQT- 321
               N       E     R+                  + L   L+ V  +V+ ++    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 322 -----QCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNR 361
                + +   G L  L  +L  +     I  E   T+S +  G +
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ 345

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 44/271 (16%), Positives = 89/271 (32%), Gaps = 15/271 (5%)

Query: 17  KVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESL 76
           +VA+   E      D  +++     E +  + R     S+ +   A      +    ++L
Sbjct: 274 EVALQGIEFWSNVCDEEMDLAIEASE-AAEQGRPPEHTSKFYAKGA--LQYLVPILTQTL 330

Query: 77  PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQF 136
                    DD +    A      L +      +  V+       F++  ++    + + 
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP------FIKEHIKNPDWRYRD 384

Query: 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 196
            A  A   I  G   +    +   A+P  ++L+  PS  VR+ A W +G +        +
Sbjct: 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPE 441

Query: 197 LVLSQGALIPLLAQLNER--AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 254
             ++   L PLL  L E   A+  +  N  W  S+      +   D            + 
Sbjct: 442 AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYE-AADVADDQEEPATYCLS 500

Query: 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
           S+ E ++              N+   +  E+
Sbjct: 501 SSFELIVQKLLETTDRPDGHQNNLRSSAYES 531

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.98
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.98
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.88
3grl_A	651	General vesicular transport factor P115; vesicle t	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.71
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.66
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.66
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.64
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.63
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.6
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.59
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.57
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.54
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.52
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.51
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.5
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.45
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.43
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.42
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.41
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.39
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.37
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.34
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.34
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.32
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.21
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.1
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.0
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.98
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.98
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.97
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.95
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.91
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.9
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.87
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.83
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.82
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.81
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.76
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.68
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.55
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.51
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.18
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.04
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.03
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.99
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.91
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.88
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.83
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.75
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.71
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.67
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.65
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.59
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.48
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.45
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.44
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.43
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.42
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	97.33
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.26
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.25
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.18
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.18
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.14
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.06
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.75
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.65
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.57
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.41
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.19
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.15
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.11
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.92
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.72
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.72
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.65
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.55
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.27
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.03
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.72
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.51
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.29
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.29
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.75
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.07
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	92.64
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.56
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	91.27
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.06
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	91.04
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	90.87
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	90.53
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	90.23
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	87.18
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	86.89
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.1
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	85.95
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	85.87
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	85.06
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.56
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	84.14
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.82
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	83.67
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	83.29
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	82.83
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	80.25
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.18

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.2e-58  Score=440.81  Aligned_cols=366  Identities=51%  Similarity=0.804  Sum_probs=286.3

Q ss_pred             CCCCCC-cchHHHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHH
Q 017651            1 MSLRPN-ARAEVRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPA   78 (368)
Q Consensus         1 ~~~~~~-~~~~~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   78 (368)
                      ||-.++ +.+++|+++||+ |++++|+|+||+++.++|||+||||+|+|||+.....++......+...........++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            777766 457899999998 999999999999999999999999999999987543333222111111001111246999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhh
Q 017651           79 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID  158 (368)
Q Consensus        79 l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  158 (368)
                      +++.++++|++.++.|+..++++++.+.+++++.+++.|++|.|+++|...+++.++.+|+|+|+||+.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999888999999999999999999987766999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC
Q 017651          159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~  234 (368)
                      .|++|.|+.+|.+++..+++.|+|+|+||+.+++.+++.+.+.|++++|+.+|....    ...+++.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995332    3467899999999999987


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       235 -~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                       +........+++|.|+.+|.+++++++.+++|+|++++.++++..+.+++.|+++.|+.+|.++++.++.+|+++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             5566666789999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       314 ~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      +.+++..+..+++.|+++.|..+|.++ ++.++++|||+|+|++++++++++.+
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v  373 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQV  373 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            999999999999999999999999998 99999999999999999999988765

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.4e-52  Score=402.38  Aligned_cols=365  Identities=86%  Similarity=1.271  Sum_probs=284.5

Q ss_pred             CCCCCCcchHHHHhhcccCCCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHH
Q 017651            1 MSLRPNARAEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMV   80 (368)
Q Consensus         1 ~~~~~~~~~~~r~~~~k~~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~   80 (368)
                      |++.+++++++|+++||++++++|+|+||+++.++|||+||+|+++|||++....+...+......  .....+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~l~~lv   80 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATG--VDKKLESLPAMI   80 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC------------------------CHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccc--hhhhHHHHHHHH
Confidence            788888899999999999999999999999999999999999999999997433222111100000  112235799999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC
Q 017651           81 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (368)
Q Consensus        81 ~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  160 (368)
                      +.|.+++++.+..|++.|+++++...+++...++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|
T Consensus        81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  160 (528)
T 4b8j_A           81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (528)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence            99999999999999999999998775588899999999999999999876689999999999999998899999999999


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD  240 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  240 (368)
                      +++.|+.+|.++++.+++.|+|+|+||+.+.+.++..+...|++++|+.++..+.+..++..++|+|++|+...+.....
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~  240 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE  240 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence            99999999999999999999999999999999999999999999999999977789999999999999999987777777


Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       241 ~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                      ...+++|.|+.+|.+++++++..++|+|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus       241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~  320 (528)
T 4b8j_A          241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ  320 (528)
T ss_dssp             HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence            77899999999999999999999999999999998888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      .+.+++.|+++.|+.+|.++.++.++++|+|+|+|++.+++++++.+
T Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~  367 (528)
T 4b8j_A          321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV  367 (528)
T ss_dssp             HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999876578999999999999999999887754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=3e-48  Score=372.43  Aligned_cols=357  Identities=54%  Similarity=0.808  Sum_probs=305.5

Q ss_pred             cchHHHHhhccc-C-CCchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccC---CCCC-CCC---CCCcchhhh-hhhccH
Q 017651            7 ARAEVRRNRYKV-A-VDADEGRRRREDNMVEIRKNKREESLLKKRREGLQ---SQQF-PPP---APASNLNLQ-TKLESL   76 (368)
Q Consensus         7 ~~~~~r~~~~k~-~-~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~---~~~~-~~~---~~~~~~~~~-~~~~~i   76 (368)
                      .+++.|++.||+ + ++++|+|+||++..+++||+||++++.|||+....   .+.. ...   .....  .. ...+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i   89 (530)
T 1wa5_B           12 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQ--FYSQLQQEL   89 (530)
T ss_dssp             CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC------------------------------CCH
T ss_pred             CchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhh--hhhhhHHHH
Confidence            455789999999 8 99999999999999999999999999999998542   1110 000   00000  10 112469


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (368)
Q Consensus        77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  156 (368)
                      +.+++.|.+++++.+..|+..|+++++...++++..+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+
T Consensus        90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~  169 (530)
T 1wa5_B           90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  169 (530)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999998876567788899999999999999997339999999999999999888889999


Q ss_pred             hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 017651          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-P  235 (368)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~  235 (368)
                      ++.|+++.|+.+|.++++.+++.|+|+|+||+.+.+.+++.+...|++++|+.++ .+.+..++..++|+|++|+.+. +
T Consensus       170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999888999999999999999999 5688999999999999999987 6


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      ........+++|.|+.+|.++++.++..++|+|++|+...++....+++.|+++.|+.+|.++++.++..|+++|++++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence            66666678999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          316 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       316 ~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      +++...+.+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++++++.+
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~  379 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAV  379 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9998889899999999999999999 89999999999999999999887754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=6.6e-46  Score=353.61  Aligned_cols=336  Identities=51%  Similarity=0.810  Sum_probs=275.0

Q ss_pred             hHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCC
Q 017651           29 REDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSP  108 (368)
Q Consensus        29 r~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~  108 (368)
                      |-...++.|+++++....+.++....+++.......+.  ....-..++.+++.++|+|++.|+.|+..+|+++|.++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p   91 (510)
T 3ul1_B           14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSN--QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP   91 (510)
T ss_dssp             -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred             CCcccHHHHHHHHHhhccCCccccCCccccchhhhccc--cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence            33456778888887777777765443333211111010  0001146999999999999999999999999999999899


Q ss_pred             chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017651          109 PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  188 (368)
Q Consensus       109 ~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla  188 (368)
                      +++.+++.|+||.|+++|.+++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.++++.|+|+|+||+
T Consensus        92 pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa  171 (510)
T 3ul1_B           92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA  171 (510)
T ss_dssp             CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999987766899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHhcCChHHHHHHhcccc----chhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHH
Q 017651          189 GDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTD  263 (368)
Q Consensus       189 ~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~  263 (368)
                      .+++.+++.+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.++.+++++++..
T Consensus       172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~  251 (510)
T 3ul1_B          172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD  251 (510)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             hCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999995332    3457889999999999987 55566667899999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCc
Q 017651          264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK  343 (368)
Q Consensus       264 a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~  343 (368)
                      ++|+|++|+.++++....+.+.|+++.|+.+|.++++.++.+++++|+|++.+++..+..+++.|+++.|..+|.++ ++
T Consensus       252 A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~  330 (510)
T 3ul1_B          252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KT  330 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SH
T ss_pred             HHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CH
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             cHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          344 SIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       344 ~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      .++++|+|+|+||+++++++++.+
T Consensus       331 ~v~~~A~~aL~nl~a~~~~~~~~v  354 (510)
T 3ul1_B          331 NIQKEATWTMSNITAGRQDQIQQV  354 (510)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHH
Confidence            999999999999999999998765

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.5e-36  Score=289.08  Aligned_cols=290  Identities=27%  Similarity=0.447  Sum_probs=258.9

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.|+++|++ +++.+|..|+++|.++++++ ++....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            579999999985 55899999999999998875 677788999999999999999988 999999999999999988999


Q ss_pred             hHHHhhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  227 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  227 (368)
                      +..+.+.|+++.|+.+|.+++     ..+...++|+|+|++.+...........++++.|+.++ .+++.+++..++|+|
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL  256 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  256 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence            999999999999999998754     45788999999999987654445555567899999999 788999999999999


Q ss_pred             HHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017651          228 SNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA  306 (368)
Q Consensus       228 ~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a  306 (368)
                      ++|+...+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus       257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            99998753222 22336899999999999999999999999999999999998999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017651          307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM  367 (368)
Q Consensus       307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v  367 (368)
                      +|+|+||+.+++.+.+.+++.|+++.|+.++.++ ++.+|++|+|+|+|++. ++++++.++
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L  397 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYL  397 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            9999999999999999999999999999999999 99999999999999997 788887654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.4e-36  Score=288.14  Aligned_cols=290  Identities=27%  Similarity=0.443  Sum_probs=259.8

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.|++.|.+ +++.++..|+++|.+++++. +.....+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++.
T Consensus       119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHH
Confidence            679999999974 56899999999999998764 566778999999999999999998 999999999999999988999


Q ss_pred             hHHHhhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  227 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  227 (368)
                      +..+++.|+++.|+.+|..++     ..+...++|+|+|++.+...........++++.|+.++ .+++++++..++|+|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHH
Confidence            999999999999999998654     45788999999999987655445555567899999999 788999999999999


Q ss_pred             HHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017651          228 SNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA  306 (368)
Q Consensus       228 ~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a  306 (368)
                      ++++.+.+... .....+++|.|+.+|.++++.++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus       276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a  355 (529)
T 3tpo_A          276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  355 (529)
T ss_dssp             HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence            99998753222 22337899999999999999999999999999999999998999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017651          307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM  367 (368)
Q Consensus       307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v  367 (368)
                      +|+|+||+.+++.+...+++.|+++.|+.++.++ ++.++++|+|+|+|++. ++++++.++
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l  416 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYL  416 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999999999999999999999999999999 99999999999999997 788887654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=6.4e-35  Score=274.03  Aligned_cols=291  Identities=62%  Similarity=0.968  Sum_probs=267.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhc-CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ++.+++.++++++..+..|+..|+++++...+++...+++. |++|.|+++|.+++++.++..|+++|++++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88999999999999999999999999875446677778888 99999999999983499999999999999998888888


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .+++.|+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++.+.
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88899999999999999999999999999999999998899999999999999999955578999999999999999876


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          235 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       235 -~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                       +........+++|.|+.++.++|+.++..++|+|++++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555666689999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       314 ~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      +.+++...+.+++.|+++.|..++.++ ++.+++.|+|+|+|++.|++++++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~  314 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTV  314 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999988888899999999999999998 89999999999999999998887654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.3e-35  Score=267.27  Aligned_cols=276  Identities=19%  Similarity=0.167  Sum_probs=239.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC----------CCHHHHHHHHHHHHHHhcCCCcchHHHh
Q 017651           88 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----------DYPQLQFEAAWALTNIASGTSENTKVVI  157 (368)
Q Consensus        88 ~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~  157 (368)
                      ...+..|+++|.++.. + .+..+.+++.|+++.|+.+|..+          .++.++..|+|+|.|++.+++..+..+.
T Consensus        46 ~~~~~~A~~aL~nls~-d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-S-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-C-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3445589999999954 3 57788899999999999999521          1268999999999999997766777775


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-
Q 017651          158 D-HGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-  234 (368)
Q Consensus       158 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-  234 (368)
                      . .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+++|..+.+.++++.++++|+||+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            4 46699999999999999999999999999985 66789999999999999998756778899999999999999843 


Q ss_pred             CCCChhh-hhchHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017651          235 PQPPFDQ-VRPALPALAQLVHSNDE----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA  306 (368)
Q Consensus       235 ~~~~~~~-~~~~~~~L~~lL~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a  306 (368)
                      ....... ..+++|.|+.+|.+.++    +++..++|+|.||+.   ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            2222222 47999999999987654    599999999999997   677888899999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651          307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV  366 (368)
Q Consensus       307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~  366 (368)
                      +++|+|++.+++++.+.+.+.|+++.|..+|.++ ++.+++.|+|+|.||+.+++++++.
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~~  342 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYKD  342 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHhh
Confidence            9999999988899999999999999999999998 8999999999999999998887654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2e-35  Score=288.36  Aligned_cols=287  Identities=15%  Similarity=0.133  Sum_probs=246.3

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .++.++++|.++  +++.+..|++.|.++...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.++++
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            367788888887  889999999999998542  34444455 6899999999999987 89999999999999986532


Q ss_pred             c--------------------------------hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017651          152 N--------------------------------TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  199 (368)
Q Consensus       152 ~--------------------------------~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~  199 (368)
                      .                                .+.+++.|++|.|+.+|.++++.++++|+|+|+||+++ +.+|..++
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence            1                                26788999999999999999999999999999999986 45899999


Q ss_pred             hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCCh--hhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCC
Q 017651          200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPF--DQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGT  275 (368)
Q Consensus       200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~  275 (368)
                      +.|++++|+.+| .+.+...++.|+|+|++|+.+. |...+  ....+++|.|+.+|.+++ ...+.+|+|+|.||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 6677889999999999999764 22211  123468999999998663 445679999999999998


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS  354 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~l~~ll~~~~~~~v~~~a~~~l~  354 (368)
                      ++..+.+++.|+++.|+.+|.++++.++.+|+++|+||+.+++...+ +.+ .|.++.|+.++.++ +..++++|+|+|+
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa  690 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA  690 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999997765444 554 68999999999998 8999999999999


Q ss_pred             HHhcCCHHHhhhcC
Q 017651          355 NITAGNRDQIQVMI  368 (368)
Q Consensus       355 nl~~~~~~~i~~vi  368 (368)
                      |+++|+++++++++
T Consensus       691 nLt~~s~~~~~~ii  704 (810)
T 3now_A          691 IITSVSVKCCEKIL  704 (810)
T ss_dssp             HHHHHCHHHHHHHH
T ss_pred             HHhCCCHHHHHHHH
Confidence            99999999988764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=267.36  Aligned_cols=255  Identities=20%  Similarity=0.179  Sum_probs=221.8

Q ss_pred             CCchHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCChHHHHHhhCCCCHH
Q 017651          107 SPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIASGTSENTKVVID-HGAVPIFVKLLASPSDD  175 (368)
Q Consensus       107 ~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~  175 (368)
                      ..+.+.+++.|+++.|+.+|..          ..++.++..|+|+|.|++.+++..+..+.. .|+||.|+.+|.+++++
T Consensus       179 ~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~  258 (458)
T 3nmz_A          179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED  258 (458)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHH
Confidence            3445667789999999999952          122679999999999999977667666654 46699999999999999


Q ss_pred             HHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHh
Q 017651          176 VREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQ-VRPALPALAQL  252 (368)
Q Consensus       176 v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~L~~l  252 (368)
                      +++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++.+|+||+... ....... ..+++|.|+.+
T Consensus       259 v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~L  338 (458)
T 3nmz_A          259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT  338 (458)
T ss_dssp             HHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHH
Confidence            999999999999985 66789999999999999998757778899999999999999833 2222222 47999999999


Q ss_pred             hcCCCH----HHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHH
Q 017651          253 VHSNDE----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII  325 (368)
Q Consensus       253 L~~~d~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~  325 (368)
                      |.+.++    +++..++|+|.||+.   ..++..+.+++.|+++.|+.+|.+++..++..|+++|+|++.+++++...++
T Consensus       339 L~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  418 (458)
T 3nmz_A          339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW  418 (458)
T ss_dssp             TTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            987654    599999999999997   6788888999999999999999999999999999999999988899999999


Q ss_pred             HcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          326 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       326 ~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      +.|+++.|..+|.++ ++.+++.|+|+|.||+.++|.
T Consensus       419 ~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          419 DMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCSC
T ss_pred             HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHh
Confidence            999999999999998 999999999999999998765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=4e-34  Score=279.16  Aligned_cols=290  Identities=13%  Similarity=0.099  Sum_probs=246.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCC----------------------------c---hHHHHhcCcHHHH
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSP----------------------------P---IEEVIQSGVVPRF  122 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~----------------------------~---~~~~i~~g~i~~L  122 (368)
                      +.+|.|+++++++++..++.|++.|.+++.+.+..                            .   ++.+++.|++|.|
T Consensus       421 g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~L  500 (810)
T 3now_A          421 ASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTAL  500 (810)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             chHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHH
Confidence            56999999999999999999999999998753111                            0   2578899999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhH-HHHHh
Q 017651          123 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCR-DLVLS  200 (368)
Q Consensus       123 v~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~-~~~~~-~~i~~  200 (368)
                      +.+|++++ +.+|..|+|+|+||+. +++++..+++.|++|.|+.+|.++++..++.|+|+|+||+.+ ++... .....
T Consensus       501 V~LL~s~s-~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          501 CALAKTES-HNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHTCCC-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            99999988 9999999999999997 578999999999999999999999999999999999999864 33210 00012


Q ss_pred             cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHH
Q 017651          201 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI  279 (368)
Q Consensus       201 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~  279 (368)
                      .|++++|+.+|..+.+...+..++|+|.||+...+.. ......+++|.|+.+|.++++.++..|+++|+||+.+++.. 
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-  657 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-  657 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence            3589999999953334455678999999999875322 22333689999999999999999999999999999876544 


Q ss_pred             HHHHH-cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          280 QAVIE-AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       280 ~~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~-~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      ..+++ .|.++.|+.++.+++..++..|+|+|+|++.+++.+.+.+++ .|+++.|+.+|.++ +..+++.|+|+|+|++
T Consensus       658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI  736 (810)
T ss_dssp             HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            55554 689999999999999999999999999999988888999999 89999999999999 9999999999999999


Q ss_pred             cCCHHHhhhc
Q 017651          358 AGNRDQIQVM  367 (368)
Q Consensus       358 ~~~~~~i~~v  367 (368)
                      .+++++.+++
T Consensus       737 ~~s~e~~~~l  746 (810)
T 3now_A          737 NAGEEIAKKL  746 (810)
T ss_dssp             TTCHHHHHHH
T ss_pred             hCCHHHHHHH
Confidence            9888887765

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.2e-34  Score=270.25  Aligned_cols=280  Identities=18%  Similarity=0.182  Sum_probs=233.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.++..|.+++++.+..|+++|++++..+ .+....+++.|++|.|+++|++++ +.++..|+|+|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999997542 344558899999999999999988 99999999999999998899999


Q ss_pred             HHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--------c-------cchh
Q 017651          155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------R-------AKLS  218 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--------~-------~~~~  218 (368)
                      .+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.+|..        .       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999998 568888888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhh-h-chHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCC---------------
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQV-R-PALPALAQLVHS------NDEEVLTDACWALSYLSDGT---------------  275 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~-~-~~~~~L~~lL~~------~d~~v~~~a~~~l~~l~~~~---------------  275 (368)
                      +++.++|+|+|||.. +....... . |++|.|+.+|.+      .+..++..++++|.+++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999987 33222222 3 899999999975      46678889999999987320               


Q ss_pred             -----------------------------------hHHHHHHHHcCChHHHHHhcCC-CCcchHHHHHHHHHHhhcCChH
Q 017651          276 -----------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF  319 (368)
Q Consensus       276 -----------------------------------~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~nl~~~~~~  319 (368)
                                                         +...+.+.+.|+++.++.+|.+ .++.+++.|+|+|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               1112234456778889999854 4689999999999999987653


Q ss_pred             H---H-HHHH-HcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          320 Q---T-QCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       320 ~---~-~~~~-~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      .   . +.++ +.|++|.|+.+|.++ ++.++++|+|+|+|++.+.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH
Confidence            2   2 3344 689999999999999 9999999999999999853

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=264.35  Aligned_cols=289  Identities=21%  Similarity=0.224  Sum_probs=223.7

Q ss_pred             hhhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCC-----------HHHHHHH
Q 017651           71 TKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDY-----------PQLQFEA  138 (368)
Q Consensus        71 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~-----------~~v~~~a  138 (368)
                      .+++.++.++..+.+.++..      .++++++.+.+++. ..+++.|++|.|+++|...+.           ++++.+|
T Consensus        29 ~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a  102 (458)
T 3nmz_A           29 TKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA  102 (458)
T ss_dssp             ----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence            45677899999999888763      34444444444555 778999999999999997542           7999999


Q ss_pred             HHHHHHHhcCCCcchHHHhhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChhh
Q 017651          139 AWALTNIASGTSENTKVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAGDSPRC  194 (368)
Q Consensus       139 ~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nla~~~~~~  194 (368)
                      +|+|+||+.++++......+.|++          +.+++++.+..  .+     +++       +|+|+|+||+.+ +++
T Consensus       103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~  181 (458)
T 3nmz_A          103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH  181 (458)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999998888888          77777787642  22     545       999999999877 789


Q ss_pred             HHHHHhcCChHHHHHHhcc----------ccchhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhcCCCHHHHH
Q 017651          195 RDLVLSQGALIPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQLVHSNDEEVLT  262 (368)
Q Consensus       195 ~~~i~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~lL~~~d~~v~~  262 (368)
                      |+.+.+.|++++|+.+|..          +.+..+++.++|+|.|||.+++......  ..+++|.|+.+|.+++++++.
T Consensus       182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~  261 (458)
T 3nmz_A          182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ  261 (458)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence            9999999999999999942          2457899999999999998864222222  356799999999999999999


Q ss_pred             HHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhhCC
Q 017651          263 DACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTH  339 (368)
Q Consensus       263 ~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~g~l~~l~~ll~~  339 (368)
                      .++|+|+||+.. +++....+++.|+++.|+.+| .+.++.++..|+++|+||+.++++....+. ..|+++.|+.+|.+
T Consensus       262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999985 566778889999999999975 667889999999999999996655555566 78999999999998


Q ss_pred             CCCc----cHHHHHHHHHHHHhc---CCHHHhhhc
Q 017651          340 SHKK----SIKKEACWTISNITA---GNRDQIQVM  367 (368)
Q Consensus       340 ~~~~----~v~~~a~~~l~nl~~---~~~~~i~~v  367 (368)
                      + ++    .++++|+|+|.|++.   +++++.+.|
T Consensus       342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i  375 (458)
T 3nmz_A          342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQIL  375 (458)
T ss_dssp             C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            7 43    499999999999997   888887765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3.7e-33  Score=261.98  Aligned_cols=289  Identities=27%  Similarity=0.380  Sum_probs=254.9

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.|++.+.++ ++..+..|+++|.++.+.. .+....+++.|++|.|+++|.+++ +.++..|+|+|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4589999999988 8999999999999998754 455667888999999999999987 999999999999999988888


Q ss_pred             hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      +..+++.|+++.|+.++.+ ++..++..++|+|+|++.+. +.....+. .++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            8999999999999999995 78999999999999999765 43322333 67899999999 677899999999999999


Q ss_pred             hcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651          231 CRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (368)
Q Consensus       231 ~~~~~~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  309 (368)
                      +...+. .......+++|.|+.+|.+++++++..++++|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            986422 2222236899999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC-CHHHhhhc
Q 017651          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQVM  367 (368)
Q Consensus       310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~i~~v  367 (368)
                      |+|++.+++...+.+++.|+++.|+.+|.++ ++.+|++|+|+|+|++.+ ++++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l  357 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYL  357 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999988888899999999999999998 899999999999999984 78877654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.9e-33  Score=266.64  Aligned_cols=289  Identities=28%  Similarity=0.406  Sum_probs=257.9

Q ss_pred             ccHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.|++.|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            56999999999887 999999999999998753 566677889999999999999987 999999999999999988888


Q ss_pred             hHHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          153 TKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      +..+...|+++.|+.+| .+++..++..++|+|+||+...+.. ......|+++.|+.++ .+.+..++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 6788999999999999999876443 3344578999999999 7789999999999999999


Q ss_pred             cCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHHHH
Q 017651          232 RGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRT  309 (368)
Q Consensus       232 ~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~  309 (368)
                      .+.+... .....+++|.|+.+|.++++.++..|+++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            7743221 223368999999999999999999999999999999888888999999999999999888 89999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017651          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM  367 (368)
Q Consensus       310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v  367 (368)
                      |+|++.+++.....+++.|+++.|+.+|.++ ++.++++|+|+|+|++. ++++++.++
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l  410 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYL  410 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999888889999999999999999998 89999999999999998 478877654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=6.9e-33  Score=265.68  Aligned_cols=290  Identities=27%  Similarity=0.381  Sum_probs=256.2

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.|++.|.++ ++.++..|+++|.++.+.. ......+++.|+++.|+.+|.+++ +.++..|+|+|++++.+++..
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            5799999999987 8999999999999998753 455677889999999999999887 999999999999999987888


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..++..|+++.|+.++.+++..++..++|+|++|+.+...........++++.|+.++ .+.+..++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999976522234555678999999999 67789999999999999998


Q ss_pred             CCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651          233 GKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (368)
Q Consensus       233 ~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  311 (368)
                      ..+.... ....+++|.|+.+|.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7432212 222589999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCH--HHhhhc
Q 017651          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR--DQIQVM  367 (368)
Q Consensus       312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~i~~v  367 (368)
                      +++.+++...+.+++.|+++.|+.+|.++ ++.+++.|+|+|+|++. +++  ++++++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l  424 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYL  424 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99998888888899999999999999988 89999999999999998 455  666543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.1e-32  Score=256.86  Aligned_cols=281  Identities=20%  Similarity=0.217  Sum_probs=238.0

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .+.+|.|+++|.++++..+..|+++|+++...+ +++...+++.|++|.|+++|. +++ ++++..|+|+|+|++.+ ++
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~-~~  119 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSST-DE  119 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS-SS
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcC-HH
Confidence            367999999999999999999999999998753 566677889999999999999 666 89999999999999997 78


Q ss_pred             chHHHhhCCChHHHHHhh--------CC--------CCHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHHhccc
Q 017651          152 NTKVVIDHGAVPIFVKLL--------AS--------PSDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAQLNER  214 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL--------~~--------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~-~~i~~l~~~l~~~  214 (368)
                      .+..+++ |++|.|+.+|        .+        .+..++..|+|+|+||+.+ ++.++.+.+. |++++|+.+|...
T Consensus       120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~  197 (457)
T 1xm9_A          120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC  197 (457)
T ss_dssp             THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred             hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence            8888999 9999999999        32        2466777999999999988 7899999998 9999999887420


Q ss_pred             --------------------------------------------------------------------------------
Q 017651          215 --------------------------------------------------------------------------------  214 (368)
Q Consensus       215 --------------------------------------------------------------------------------  214 (368)
                                                                                                      
T Consensus       198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (457)
T 1xm9_A          198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG  277 (457)
T ss_dssp             HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred             ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence                                                                                            


Q ss_pred             ------------------cchhHHHHHHHHHHHhhcCCCCCC--h--hh--hhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 017651          215 ------------------AKLSMLRNATWTLSNFCRGKPQPP--F--DQ--VRPALPALAQLVHSNDEEVLTDACWALSY  270 (368)
Q Consensus       215 ------------------~~~~~~~~a~~~L~~l~~~~~~~~--~--~~--~~~~~~~L~~lL~~~d~~v~~~a~~~l~~  270 (368)
                                        .++.+++.++|+|+|||.+.....  .  ..  ..+++|.|+++|.+++.+++..|+|+|+|
T Consensus       278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n  357 (457)
T 1xm9_A          278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN  357 (457)
T ss_dssp             GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence                              124556678999999998753211  1  12  26899999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhcCCCCc------chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCcc
Q 017651          271 LSDGTNDKIQAVIEAGVCPRLVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS  344 (368)
Q Consensus       271 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~------~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~  344 (368)
                      ++.+.  ....++..|+++.|+.+|.+.++      ++...++++++|++.++++....+.+.|+++.|..++.+++++.
T Consensus       358 ls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~  435 (457)
T 1xm9_A          358 MSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK  435 (457)
T ss_dssp             HHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred             HhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence            99853  33556677899999999987643      57889999999999999989999999999999999999876789


Q ss_pred             HHHHHHHHHHHHhcCC
Q 017651          345 IKKEACWTISNITAGN  360 (368)
Q Consensus       345 v~~~a~~~l~nl~~~~  360 (368)
                      +++.|+|+|.|+....
T Consensus       436 i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          436 AAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHHHcch
Confidence            9999999999998643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=100.00  E-value=1.3e-31  Score=231.73  Aligned_cols=242  Identities=29%  Similarity=0.424  Sum_probs=223.6

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      |.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.+++..++..++|+|+|++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            67999999999998 99999999999999998778899999999999999999999999999999999999999889999


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~  275 (368)
                      .+.+.|+++.++.++ .+++..++..++|+|.+++...+. .......+++|.|++++.+++++++..++++|++++..+
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 678899999999999999975432 222333689999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      ++....+++.|+++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999998888899999999999999999998 89999999999999


Q ss_pred             HhcCCH
Q 017651          356 ITAGNR  361 (368)
Q Consensus       356 l~~~~~  361 (368)
                      ++...+
T Consensus       239 l~~~~~  244 (252)
T 4hxt_A          239 IKSGGW  244 (252)
T ss_dssp             HHHTCB
T ss_pred             HHcCCC
Confidence            997543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=9.1e-31  Score=247.68  Aligned_cols=283  Identities=17%  Similarity=0.192  Sum_probs=229.9

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           73 LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        73 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      .+.||.|+++|.+++++++..|+++|+++......++...+++.|+||.|+.+|.+..+.+++..|+++|+|++. +++.
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~  167 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSI  167 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGG
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            367999999999999999999999999997653356778899999999999999975438999999999999999 5788


Q ss_pred             hHHHhhCCChHHHHHhhC------------------CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC-hHHHHHHhcc
Q 017651          153 TKVVIDHGAVPIFVKLLA------------------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA-LIPLLAQLNE  213 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~------------------~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~-i~~l~~~l~~  213 (368)
                      +..+++ ++++.|+.++.                  .++..+++.|+++|.||+.+++..|..+.+.++ +++|+.++..
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            888886 67999999871                  235799999999999999988877888877544 4577666532


Q ss_pred             -------------------------------------------------------------------------ccchhHH
Q 017651          214 -------------------------------------------------------------------------RAKLSML  220 (368)
Q Consensus       214 -------------------------------------------------------------------------~~~~~~~  220 (368)
                                                                                               +.++.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                                                                                     1223444


Q ss_pred             HHHHHHHHHhhcCCCC-C-Ch-hh--hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q 017651          221 RNATWTLSNFCRGKPQ-P-PF-DQ--VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (368)
Q Consensus       221 ~~a~~~L~~l~~~~~~-~-~~-~~--~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL  295 (368)
                      +.++|+|.|||.+... . .. ..  ..+++|.|+.+|.+++.+++..++|+|+||+.+....  .++..|+++.|+.+|
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL  404 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK--ELIGKHAIPNLVKNL  404 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH--HHHHhCCHHHHHHHh
Confidence            5555666666554311 0 00 11  1478999999999999999999999999999876533  455789999999999


Q ss_pred             CCC--------CcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhcC
Q 017651          296 GHP--------SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAG  359 (368)
Q Consensus       296 ~~~--------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~  359 (368)
                      .++        +..++.+|+++|+||+.+++++.+.+++.|+++.|+.++.++ ..+.+++.|+|+|+|++..
T Consensus       405 ~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          405 PGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             SSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             cCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            776        356789999999999999999999999999999999999874 4789999999999999874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.98  E-value=1.8e-31  Score=231.24  Aligned_cols=239  Identities=36%  Similarity=0.560  Sum_probs=219.8

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      ...+.++..|.+++ ++++..|+++|.++.+.+.+.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45899999999998 89999999999887765677888899999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~  275 (368)
                      .+.+.|+++.|+.+| .++++.++..++|+|.+|+...+.. ......+++|.|+.+|.++++.++..++|+|++++.++
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999875433 33344789999999999999999999999999999988


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      ++....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|..++.++ ++.+++.|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999998998999999999999999999998 99999999999999


Q ss_pred             Hhc
Q 017651          356 ITA  358 (368)
Q Consensus       356 l~~  358 (368)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.98  E-value=1.3e-31  Score=253.41  Aligned_cols=282  Identities=20%  Similarity=0.233  Sum_probs=231.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-CCcc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~  152 (368)
                      ..++.|+++|.+++++.+..|+++|++++... .++...+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            46999999999999999999999999997654 677788999999999999999988 99999999999999985 6899


Q ss_pred             hHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----------------cc
Q 017651          153 TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----------------ER  214 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-----------------~~  214 (368)
                      +..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.. +++++|++++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 6789999999999999985 467777775 57999999872                 12


Q ss_pred             cchhHHHHHHHHHHHhhcCCCCCCh-h-hhhchHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCChHH--------
Q 017651          215 AKLSMLRNATWTLSNFCRGKPQPPF-D-QVRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK--------  278 (368)
Q Consensus       215 ~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~~~~~~L~~lL~~------~d~~v~~~a~~~l~~l~~~~~~~--------  278 (368)
                      .+..++++++|+|.||+...+.... . ...++++.|+.++++      .+...+..|+|+|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3579999999999999987533222 2 225778899999864      46789999999999999652111        


Q ss_pred             -----------------HHHHHHcCChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChH---HHH-HHHHcCChHHHHHh
Q 017651          279 -----------------IQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDF---QTQ-CIITYGALPYLLGL  336 (368)
Q Consensus       279 -----------------~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~---~~~-~~~~~g~l~~l~~l  336 (368)
                                       ++.+.+.++++.++.+|. +.++.+++.|+++|.||+.+...   ..+ .+.+.|+++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             111223345677888884 56789999999999999987632   222 34456889999999


Q ss_pred             hCCCCCccHHHHHHHHHHHHhcCC
Q 017651          337 LTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       337 l~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      |.++ +..+++.|+|+|+||+.+.
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTC
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCCh
Confidence            9999 8999999999999999854

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=2e-30  Score=224.67  Aligned_cols=239  Identities=37%  Similarity=0.572  Sum_probs=217.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ..++.+++.|++++++.+..|++.|+++++. ..+....+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            4589999999999999999999999998886 3677788999999999999999998 9999999999999999889999


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ..+++.|+++.|+.+|.++++.+++.|+|+|+||+.+.+.....+.+.|+++.|+.++ .+++..++..++|+|.+|+..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998765548899999999999999 777999999999999999987


Q ss_pred             CCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          234 KPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       234 ~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .+... .....+++|.|+.+|.++++.++..++++|++++.++++....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            53222 22337899999999999999999999999999998888888899999999999999999999999999999999


Q ss_pred             hhc
Q 017651          313 IVT  315 (368)
Q Consensus       313 l~~  315 (368)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=8.2e-30  Score=220.42  Aligned_cols=242  Identities=29%  Similarity=0.398  Sum_probs=221.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|++.+.+++++.+..|++.|.+++... ......+++.|+++.|+++|.+++ +.++..|+++|++++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            46899999999999999999999999998754 457778899999999999999988 9999999999999999889999


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      ..+.+.|+++.|+.+|.++++.++..|+|+|+|++...+..+..+.+.|+++.++.++ .++++.++..++|+|.+|+..
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988888999999999999999999 778899999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          234 KPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       234 ~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .+.. ......+++|.|+.++.++++.++..++++|++++.++++....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            5322 223337899999999999999999999999999999888888899999999999999999999999999999999


Q ss_pred             hhcCCh
Q 017651          313 IVTGDD  318 (368)
Q Consensus       313 l~~~~~  318 (368)
                      ++...+
T Consensus       239 l~~~~~  244 (252)
T 4hxt_A          239 IKSGGW  244 (252)
T ss_dssp             HHHTCB
T ss_pred             HHcCCC
Confidence            987654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=1.1e-28  Score=236.38  Aligned_cols=284  Identities=19%  Similarity=0.220  Sum_probs=249.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|++.+.++++.++..|++.|.+++... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            57999999999999999999999999998764 455667789999999999999987 8999999999999999888999


Q ss_pred             HHHhhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      ..+.+.|+++.|+.+|.++ ....+..++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..++..++|+|.+|+.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999864 456778899999999975 46788999999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l  310 (368)
                      ..+..  ....+++|.|++++.+++++++..++|+|++|+.++++....+.+.|+++.|+.+|.+  .++.++.+|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            75332  2346899999999999999999999999999999888888999999999999999964  3478999999999


Q ss_pred             HHhhcCChH---HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          311 GNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       311 ~nl~~~~~~---~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      +|++.+++.   ....+.+.|+++.|..+|.++.++.++++|+|+|+|++.++..+
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~  390 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH  390 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh
Confidence            999886543   35578899999999999999833599999999999999876554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=241.21  Aligned_cols=284  Identities=19%  Similarity=0.221  Sum_probs=249.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|++++.++++.++..|+++|.++++.. ......+++.|+++.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            57999999999999999999999999998764 566677889999999999999987 8888888999999998888999


Q ss_pred             HHHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          154 KVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      ..+.+.|+++.|+.+|.+.+ ..+++.++.+|.|++.. +..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999998754 67889999999999965 56889999999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l  310 (368)
                      ..+.  .....+++|.|+.+|.+.+++++..++|+|++|+.++++....+.+.|+++.|+.+|.+.  .+.++..|+++|
T Consensus       254 ~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            7533  234468999999999999999999999999999998888888999999999999999653  379999999999


Q ss_pred             HHhhcCCh--HH-HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          311 GNIVTGDD--FQ-TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       311 ~nl~~~~~--~~-~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      +||+...+  .. ...+.+.|+++.|..+|.++.++.++++|+|+|+|++.+...+
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~  387 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH  387 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH
Confidence            99997543  22 3347888999999999998834699999999999999876554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.4e-28  Score=221.50  Aligned_cols=246  Identities=18%  Similarity=0.198  Sum_probs=207.4

Q ss_pred             hccHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHH
Q 017651           73 LESLPAMVAGVWS-----------DDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAW  140 (368)
Q Consensus        73 ~~~i~~l~~~l~~-----------~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~  140 (368)
                      .+.++.|+.+|.+           .++..+..|+++|++++..+ .+....+. ..|+||.|+.+|.+++ ++++..|+|
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~~A~~  149 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLKSES-EDLQQVIAS  149 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGGCSC-HHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHCCCC-HHHHHHHHH
Confidence            4678999998852           24678999999999997643 33444444 4566999999999988 899999999


Q ss_pred             HHHHHhcC-CCcchHHHhhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-hcCChHHHHHHhccccch
Q 017651          141 ALTNIASG-TSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVL-SQGALIPLLAQLNERAKL  217 (368)
Q Consensus       141 ~L~~l~~~-~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~-~~~~i~~l~~~l~~~~~~  217 (368)
                      +|.|++.+ +++++..+++.|++|.|+.+ +.+.+.++++.++++|+||+...+..+..+. ..|+++.|+.+|....+.
T Consensus       150 aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~  229 (354)
T 3nmw_A          150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT  229 (354)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred             HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence            99999985 56788999999999999997 4667899999999999999997666777776 789999999999544333


Q ss_pred             ---hHHHHHHHHHHHhhc---CC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651          218 ---SMLRNATWTLSNFCR---GK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (368)
Q Consensus       218 ---~~~~~a~~~L~~l~~---~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  290 (368)
                         ++++.++|+|.||+.   .. .........+++|.|+.+|.+.+.+++..|+|+|+||+.++++....+++.|+++.
T Consensus       230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~  309 (354)
T 3nmw_A          230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM  309 (354)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence               689999999999996   33 22223333789999999999999999999999999999888888899999999999


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                      |+.+|.++++.++..|+++|.||+.+.+..
T Consensus       310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          310 LKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999887643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=6.2e-27  Score=233.11  Aligned_cols=284  Identities=19%  Similarity=0.224  Sum_probs=246.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|++.+.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            56899999999999999999999999998764 455666778999999999999977 8999999999999998888899


Q ss_pred             HHHhhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          154 KVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      ..+++.|+++.|+.+|++.+ ...++.++.+|.+|+.. +..+..+++.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999999755 45677899999999975 45788899999999999999 66788999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-CC-cchHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS-PSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~-~~v~~~a~~~l  310 (368)
                      ..+.  .....+++|.|+.+|.+.+++++..++|+|++|+.++++....+++.|+++.|+.+|.+ .+ ..++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  23346899999999999999999999999999999988888899999999999999965 33 38999999999


Q ss_pred             HHhhcCChH---HHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          311 GNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       311 ~nl~~~~~~---~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      +||+...++   ....+...|+++.|+.+|.++..+.++++|+|+|+|++.+...+
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  523 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH  523 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH
Confidence            999875543   23467889999999999998834599999999999999876554

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=1.9e-27  Score=227.77  Aligned_cols=282  Identities=17%  Similarity=0.203  Sum_probs=245.6

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.|++.+.+ ++++.+..|+..|+++...  ..+...+.+.|++|.|+++|.+++ +.++..|+++|.+++.+++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468999999975 4899999999999998543  456777889999999999999988 999999999999999977778


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+.+.|+++.|+.+|.+++.+++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888999999999999999999666677788889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .+.........++++.|+.++.+++++++..++|+|.+++...+...   ...|+++.|+.+|.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            64332333336899999999999999999999999999997654321   123679999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhcCCH
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      ++.++++....+.+.|+++.|+.+|.+. +++.++..|+++|+|++.+++
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~  342 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence            9998888899999999999999999863 247999999999999998654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=226.25  Aligned_cols=282  Identities=17%  Similarity=0.200  Sum_probs=244.7

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.|++.|.++ +++.+..|+..|+++...  ......+.+.|+++.|+++|.+++ +.++..|+++|.+++..++..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            4589999999865 899999999999987543  446777889999999999999988 999999999999999977778


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999987788899999999999999999766677888999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      ...........++++.|+.++.+.+..++..++|+|.+|+......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6433333334689999999999999999999999999999764321   1113679999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCCH
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~  361 (368)
                      |+.+++...+.+.+.|+++.|+.++.+.. .+.++..|+++|+|++.+++
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~  339 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  339 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence            99988888899999999999999998742 37999999999999998543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.95  E-value=4e-26  Score=191.91  Aligned_cols=200  Identities=35%  Similarity=0.514  Sum_probs=181.1

Q ss_pred             HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017651          114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      ...|..+.|+.+|.+++ ++++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+||+.+++.
T Consensus         9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            35678999999999988 99999999999999988889999999999999999999999999999999999999988888


Q ss_pred             hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       194 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      .+..+.+.|+++.|+.+| .+++..++..++|+|.|++...+... .....+++|.|+.++.+++++++..++|+|++++
T Consensus        88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999 77789999999999999998653222 2234789999999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          273 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      ..+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9888888889999999999999999999999999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=7e-26  Score=190.44  Aligned_cols=199  Identities=35%  Similarity=0.511  Sum_probs=181.0

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  237 (368)
                      ..|..+.|..+|.++++.++..|+|+|++++..++..+..+.+.|+++.|+.+| .++++.++..++|+|.+++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            347889999999999999999999999999988888899999999999999999 6778999999999999999765322


Q ss_pred             -ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          238 -PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       238 -~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                       ......+++|.|+.+|.++++.++..++|+|++++.+.++....+++.|+++.|+.+|.++++.++..|+++|+|++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence             2233378999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          317 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       317 ~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++.....+.+.|+++.|..++.++ ++.+++.|+|+|.+++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            888888899999999999999998 99999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=8.8e-26  Score=198.02  Aligned_cols=226  Identities=16%  Similarity=0.126  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~  210 (368)
                      .+-+..|+..|.+++. +.++...+...|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678999999999999 4678888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017651          211 LNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (368)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  289 (368)
                      |..+++..+++.++|+|++++++.+... .....+++|.|+.+|+++++.++..++|+|++++.++++....+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            9555688999999999999999864322 222368999999999999999999999999999988888889999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHc--CC---hHHHHHhhCCCC-CccHHHHHHHHHHHHhc
Q 017651          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GA---LPYLLGLLTHSH-KKSIKKEACWTISNITA  358 (368)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~--g~---l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~  358 (368)
                      .|+.+|.++++.++..|+++|++|+.+.+......-..  .+   +..-..-++..+ ..++.+.|..++-++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999865443322211  11   222233444332 35777778888887775

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.94  E-value=4.7e-26  Score=226.81  Aligned_cols=283  Identities=17%  Similarity=0.206  Sum_probs=243.6

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.|++.|.++ +++.+..|+.+|+++...  ..+...+.+.|+++.|+++|.+++ +.++..|+++|.+++..++..
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            3588999999754 899999999999997543  445667888999999999999988 999999999999999977788


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++..+++.+..+...|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888999999999999999999666667777889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      ...........++++.|+.++.+.++.++..++|+|.+|+......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5433223334689999999999999999999999999999765321   1123679999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCCCC-ccHHHHHHHHHHHHhcCCHH
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~  362 (368)
                      |+.+++.....+++.|+++.|+.+|.+..+ ..++..|+|+|+||+.++++
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~  476 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD  476 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch
Confidence            999988888999999999999999986423 38999999999999975543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.92  E-value=5.3e-24  Score=186.74  Aligned_cols=239  Identities=15%  Similarity=0.154  Sum_probs=188.7

Q ss_pred             hccHHHHHHhhcCCC------------HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHH-hhcCCCCHHHHHHHH
Q 017651           73 LESLPAMVAGVWSDD------------SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE-FLMREDYPQLQFEAA  139 (368)
Q Consensus        73 ~~~i~~l~~~l~~~~------------~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~-lL~~~~~~~v~~~a~  139 (368)
                      .+.++..+..|.++.            .+.+..|+..|..++..  .++...+...|++|.|+. +|.+++ +.++..|+
T Consensus        27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~--~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa  103 (296)
T 1xqr_A           27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAA  103 (296)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC--hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHH
Confidence            345777777777652            35778899999988753  356677889999999999 999988 99999999


Q ss_pred             HHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017651          140 WALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS  218 (368)
Q Consensus       140 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~  218 (368)
                      |+|++++.+++.++..+++.|+++.|+.+|.+ ++..+++.|+|+|+||+.+.+.....+...|++++|+.+| ++++..
T Consensus       104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~  182 (296)
T 1xqr_A          104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQK  182 (296)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHH
Confidence            99999999999999999999999999999985 5889999999999999998887778889999999999999 778999


Q ss_pred             HHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc--CC---hHHHH
Q 017651          219 MLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA--GV---CPRLV  292 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~---~~~L~  292 (368)
                      ++..++|+|++|+.+.+... .....+++|.|+.+|.++++.++..++++|++|+.+.+.........  .+   +..-.
T Consensus       183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~  262 (296)
T 1xqr_A          183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC  262 (296)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHH
Confidence            99999999999998753322 23337999999999999999999999999999998855443322211  11   11112


Q ss_pred             HhcC-CC-CcchHHHHHHHHHHhhc
Q 017651          293 ELLG-HP-SPSVLIPALRTVGNIVT  315 (368)
Q Consensus       293 ~lL~-~~-~~~v~~~a~~~l~nl~~  315 (368)
                      +.+. +. ..++...|..++-++..
T Consensus       263 ~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          263 QLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHccchHHHHHHHHHHHHHHHHHcC
Confidence            2233 22 24555666666666553

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=4.5e-24  Score=179.36  Aligned_cols=197  Identities=19%  Similarity=0.140  Sum_probs=171.3

Q ss_pred             cHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017651          118 VVPRFVEFLMREDYP--QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~  195 (368)
                      .+|.|+++|.+++ +  +++..|+++|.+++.++++.+..+.+.|+||.|+.+|.++++++++.|+|+|.||+.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999987 6  899999999999998888899999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------CCCHH
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------SNDEE  259 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~----------------~~d~~  259 (368)
                      ..+.+.|++++|+.+|....+.++++.++.+|+||+..... ......+.+|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995567899999999999999976433 23334568999988763                13679


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhcCC------CCcchHHHHHHHHHHhhcC
Q 017651          260 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       260 v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~nl~~~  316 (368)
                      ++..+.++|.||+..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999877777788876 678999999853      2567899999999999864

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.4e-23  Score=196.92  Aligned_cols=289  Identities=12%  Similarity=0.110  Sum_probs=224.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--  151 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--  151 (368)
                      ..+.+.+.+.+++.+.+..|+..|..+.. . ......+. +.|+++.|+++++...+..+.+.++.+|.|++...+.  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSL-K-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-S-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhC-C-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            46677788888777778999999998843 2 33344455 5677999999999633378999999999999984331  


Q ss_pred             ------------------------------------chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017651          152 ------------------------------------NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (368)
Q Consensus       152 ------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~  195 (368)
                                                          .+..+.+.|++|.|+.++.++++.+++.++|+|+||+.+ +..|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                345678899999999999999999999999999999987 6789


Q ss_pred             HHHHhcCChHHHHHHhccccch--hHHHHHHHHHHHhhcCC-CCCChh--hhhchHHHHHHhhcC-CCH-----------
Q 017651          196 DLVLSQGALIPLLAQLNERAKL--SMLRNATWTLSNFCRGK-PQPPFD--QVRPALPALAQLVHS-NDE-----------  258 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~~--~~~~~~~~L~~lL~~-~d~-----------  258 (368)
                      ..+++.|++++|+.++....+.  ..+..|+++|.++.... |...+.  ...+++|.|+.+|.. ++.           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999555433  37899999999998653 221111  113899999999983 211           


Q ss_pred             --HHHHHHHHHHHHhhcCCh----HHHHHHHHc-CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC---
Q 017651          259 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG---  328 (368)
Q Consensus       259 --~v~~~a~~~l~~l~~~~~----~~~~~~~~~-~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---  328 (368)
                        --..+|+.+|.||+..++    +....++.. |+++.|..+|.+++..++..|+++++|++.+.+...+.+++.+   
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              126799999999998863    334667885 9999999999999999999999999999985542213344322   


Q ss_pred             ---ChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          329 ---ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       329 ---~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                         .++.|+.++.++ +..+|+.|+|+|+|++.+++...+.+
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~l  692 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKEL  692 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHH
Confidence               378899999888 99999999999999988777655443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=9.6e-23  Score=171.28  Aligned_cols=196  Identities=18%  Similarity=0.202  Sum_probs=165.0

Q ss_pred             cHHHHHHhhcCCCH--HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           75 SLPAMVAGVWSDDS--SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        75 ~i~~l~~~l~~~~~--~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      .++.++++|.++++  +.+..|++.++++.... +++...+++.|+||.|+++|.+++ +++|..|+|+|.||+.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            69999999999988  88999999999987653 566778899999999999999988 999999999999999988999


Q ss_pred             hHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----c-----------ccc
Q 017651          153 TKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----E-----------RAK  216 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~----~-----------~~~  216 (368)
                      +..+.+.|+||.|+.+|. +++.++++.++.+|+||+... ..+..+.+. ++++|+.++.    .           ..+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 578999999999999999765 466777764 6999988652    0           126


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCCh-hh-hhchHHHHHHhhcC------CCHHHHHHHHHHHHHhhcC
Q 017651          217 LSMLRNATWTLSNFCRGKPQPPF-DQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       217 ~~~~~~a~~~L~~l~~~~~~~~~-~~-~~~~~~~L~~lL~~------~d~~v~~~a~~~l~~l~~~  274 (368)
                      .+++++++++|.||+...+.... .. ..|+++.|+.+++.      .+...++.++.+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            69999999999999986422222 22 25788999999964      2568899999999999854

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.8e-22  Score=189.84  Aligned_cols=279  Identities=12%  Similarity=0.101  Sum_probs=223.5

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCC-------------------C------------------chHHHHh
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERS-------------------P------------------PIEEVIQ  115 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~-------------------~------------------~~~~~i~  115 (368)
                      +.++.|++.+++ ++....+.++..|.+++...+.                   |                  ....+++
T Consensus       376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e  455 (778)
T 3opb_A          376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR  455 (778)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence            458889999984 7788899999999999774321                   0                  1234668


Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHH---HHHHHHHHHHHhhCC-C
Q 017651          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD---VREQAVWALGNVAGD-S  191 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nla~~-~  191 (368)
                      .|++|.|+.++.+++ +.++..|+|+|.|++. +++++..+++.|+++.|+.+|.+....   .+..|+++|.+|+.. +
T Consensus       456 aGvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n  533 (778)
T 3opb_A          456 TELISFLKREMHNLS-PNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN  533 (778)
T ss_dssp             TTHHHHHHHHGGGSC-HHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence            999999999999988 9999999999999997 589999999999999999999986544   899999999999843 3


Q ss_pred             hhhHHHHHh----cCChHHHHHHhccccch-------------hHHHHHHHHHHHhhcCCCC----CChhhh--hchHHH
Q 017651          192 PRCRDLVLS----QGALIPLLAQLNERAKL-------------SMLRNATWTLSNFCRGKPQ----PPFDQV--RPALPA  248 (368)
Q Consensus       192 ~~~~~~i~~----~~~i~~l~~~l~~~~~~-------------~~~~~a~~~L~~l~~~~~~----~~~~~~--~~~~~~  248 (368)
                      |..   ++.    .|++++|+.+|..++..             --...|+.+|.||+..+.+    .....+  .+++|.
T Consensus       534 p~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~  610 (778)
T 3opb_A          534 PGL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWST  610 (778)
T ss_dssp             HHH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHH
T ss_pred             HHH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHH
Confidence            432   221    37899999999522221             1266899999999988521    112223  379999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc------CChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH
Q 017651          249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ  322 (368)
Q Consensus       249 L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~------~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~  322 (368)
                      |..+|.+++..++..|+++++||+..+....+.+...      +.++.|+.++.+++..++..|+++|+|++++.+..++
T Consensus       611 L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~  690 (778)
T 3opb_A          611 IENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK  690 (778)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence            9999999999999999999999998654321233322      2377899999999999999999999999988888888


Q ss_pred             HHHHc-CChHHHHHhhCC--CCCccHHHHHHHHHHHHhc
Q 017651          323 CIITY-GALPYLLGLLTH--SHKKSIKKEACWTISNITA  358 (368)
Q Consensus       323 ~~~~~-g~l~~l~~ll~~--~~~~~v~~~a~~~l~nl~~  358 (368)
                      .+++. ++++.++.++++  + ++.++..++.++.|++.
T Consensus       691 ~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          691 ELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence            88887 799999999998  7 99999999999999995

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.74  E-value=5.2e-16  Score=145.61  Aligned_cols=288  Identities=14%  Similarity=0.202  Sum_probs=226.0

Q ss_pred             ccHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCCCC----------------chHHHH-hcCcHHHHHHhhcCCCCHHH
Q 017651           74 ESLPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSP----------------PIEEVI-QSGVVPRFVEFLMREDYPQL  134 (368)
Q Consensus        74 ~~i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~~~----------------~~~~~i-~~g~i~~Lv~lL~~~~~~~v  134 (368)
                      .+++.|+..|+.  .|.+....++..|..+++....+                ..+.++ +.+.++.|+.+|...+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            368999999985  47888888899998887754221                112333 5678999999999888 899


Q ss_pred             HHHHHHHHHHHhcCCCc-chHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc
Q 017651          135 QFEAAWALTNIASGTSE-NTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN  212 (368)
Q Consensus       135 ~~~a~~~L~~l~~~~~~-~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~  212 (368)
                      |..++.+|..++...++ .++.+.. .++++.|+.+|.++...+|..++..|.+|+.++++.++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999987766 6677775 499999999999999999999999999999999999999999999999999995


Q ss_pred             ccc---chhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCH------HHHHH---HHHHHHHhhcCC----
Q 017651          213 ERA---KLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDE------EVLTD---ACWALSYLSDGT----  275 (368)
Q Consensus       213 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~lL~~~d~------~v~~~---a~~~l~~l~~~~----  275 (368)
                      ...   ...+...++.++.||.+.++ +.......+++|.|..+|..+++      ....+   ++.++.-++..+    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            433   34678899999999999864 33334446899999999875432      13333   666666666542    


Q ss_pred             --hHHHHHHHHcCChHHHHHhcCCC--CcchHHHHHHHHHHhhcCChHHHHHHHHcC---------ChHHHHHhhCCCCC
Q 017651          276 --NDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYG---------ALPYLLGLLTHSHK  342 (368)
Q Consensus       276 --~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g---------~l~~l~~ll~~~~~  342 (368)
                        ......+.+.|++..+++++..+  ...++..|+.+++.++.+++...+.+....         ++..|+.++.+.+.
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              24456788999999999998665  567899999999999999998777776532         33334455666546


Q ss_pred             ccHHHHHHHHHHHHhcCCHH
Q 017651          343 KSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       343 ~~v~~~a~~~l~nl~~~~~~  362 (368)
                      ..+|-+|+.++..+..++++
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHH
Confidence            89999999999999998874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.71  E-value=1.4e-15  Score=142.76  Aligned_cols=286  Identities=16%  Similarity=0.149  Sum_probs=226.2

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCCc
Q 017651           74 ESLPAMVAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      +.|+.|+.-+.+. -.+.++.|+..|+.+...     ....+..++++.|+..|+.+ ++.++...++.+|.++....++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            5799999999854 488999999999988432     22344566799999999864 3478888999999887764432


Q ss_pred             -----------------chHHHh-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhc-CChHHHHHHh
Q 017651          152 -----------------NTKVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAQL  211 (368)
Q Consensus       152 -----------------~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~-~~i~~l~~~l  211 (368)
                                       ..+.++ +.+.++.|+.+|.+++..++..++.+|..|+...+. .++.+... ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             122333 457899999999999999999999999999988877 88888854 8999999999


Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCCChh-hhhchHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          212 NERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (368)
Q Consensus       212 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~L~~lL~~~d----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  286 (368)
                       .+..+.++..++..|.+|+.+.+..+.. ..+++++.|+.++....    ..+..+++.++.+|...+......+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             7778889999999999999986443333 33799999999997654    47899999999999999998888999999


Q ss_pred             ChHHHHHhcCCCCcc------hHHH---HHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhCCCC-CccHHHHHH
Q 017651          287 VCPRLVELLGHPSPS------VLIP---ALRTVGNIVTGD------DFQTQCIITYGALPYLLGLLTHSH-KKSIKKEAC  350 (368)
Q Consensus       287 ~~~~L~~lL~~~~~~------v~~~---a~~~l~nl~~~~------~~~~~~~~~~g~l~~l~~ll~~~~-~~~v~~~a~  350 (368)
                      +++.|..+|..+...      ....   ++.++.-++..+      ..+...+.+.|+++.+++++.++. ...++.+|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754321      1222   666666676652      245567889999999999987652 467999999


Q ss_pred             HHHHHHhcCCHHHhh
Q 017651          351 WTISNITAGNRDQIQ  365 (368)
Q Consensus       351 ~~l~nl~~~~~~~i~  365 (368)
                      .+++.+..|++..-+
T Consensus       335 ~tla~~irgN~~~Q~  349 (651)
T 3grl_A          335 NTVSEVIRGCQVNQD  349 (651)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhCCHHHHH
Confidence            999999999877544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.71  E-value=1.4e-15  Score=133.26  Aligned_cols=227  Identities=14%  Similarity=0.100  Sum_probs=176.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ..++.|+..|.++++..+..|++.|.++..            .+.++.|+.+|.+++ +.++..|+++|+.+.... ...
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~-~~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccc
Confidence            468999999999999999999999998741            235889999999888 899999999999987532 111


Q ss_pred             HHHhhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          154 KVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       154 ~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      .     ..++.|. .++.++++.++..++++|+++....+....     ..++.++..+ .++++.++..++++|.++..
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            1     1234444 245778999999999999999754332211     2577888888 78899999999999998754


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .          ..+|.|..++.++++.++..++++|+.+....+.         +++.|+..|.++++.+|..|+++|++
T Consensus       158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2          4788999999999999999999999998644332         46788889998999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +..           ...++.|..++.++   .++..|+++|+.+..
T Consensus       219 ~~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          219 RKD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD  250 (280)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC
T ss_pred             hCC-----------HhhHHHHHHHhcCc---cHHHHHHHHHHhcCc
Confidence            862           24677888888765   388999999998853

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.66  E-value=4.5e-16  Score=157.24  Aligned_cols=275  Identities=12%  Similarity=0.145  Sum_probs=201.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ++.+++.+.++++.++..|++++..++... ...... .-.++++.++.++.+++ +.++..|+++|..++...++....
T Consensus       176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~-~~vr~~a~~~L~~l~~~~~~~~~~  252 (852)
T 4fdd_A          176 IPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEE-PEVRKNVCRALVMLLEVRMDRLLP  252 (852)
T ss_dssp             HHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhCHHHHHH
Confidence            566777778889999999999999887542 211111 11356888999888887 899999999999999865544333


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhc----------cc---------
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLN----------ER---------  214 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--~~~i~~l~~~l~----------~~---------  214 (368)
                      .+. ++++.++..+.+.++.++..|++++..++... ..+..+..  ...++.++..+.          .+         
T Consensus       253 ~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd  330 (852)
T 4fdd_A          253 HMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD  330 (852)
T ss_dssp             GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred             HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence            333 47888889999999999999999999998764 23332211  023455555551          12         


Q ss_pred             --cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 017651          215 --AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  292 (368)
Q Consensus       215 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~  292 (368)
                        .+..++..++.++..++...+   ......++|.+..++.++++.++..++++++.++.+..+...... .++++.++
T Consensus       331 ~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~  406 (852)
T 4fdd_A          331 TISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLI  406 (852)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHH
Confidence              123467888899998887643   134456888888999999999999999999999988765543322 46789999


Q ss_pred             HhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          293 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       293 ~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      ..+.++++.+|..|++++++++...........-.++++.++..+.++ ++.+|..|+|+|++++.+.
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999864321111111225778888888888 8999999999999999643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.66  E-value=6.8e-15  Score=128.82  Aligned_cols=201  Identities=13%  Similarity=0.110  Sum_probs=161.8

Q ss_pred             HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 017651          114 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      ...+.++.|+..|.+++ +.++..|+++|+++..           .++++.|+.+|.++++.++..++++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            35667999999999888 9999999999999873           24689999999999999999999999999754332


Q ss_pred             hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651          194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       194 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~  273 (368)
                      ...      .++.+...+..+++..++..++++|..++...+    ......++.|..++.++++.++..++++|+++..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      233344333367889999999999999985432    1224678999999999999999999999998764


Q ss_pred             CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          274 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                                 .+.++.|+.+|.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2478999999999999999999999999864443         3467788899888 899999999999


Q ss_pred             HHHh
Q 017651          354 SNIT  357 (368)
Q Consensus       354 ~nl~  357 (368)
                      +++.
T Consensus       217 ~~~~  220 (280)
T 1oyz_A          217 SYRK  220 (280)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9986

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.64  E-value=1.7e-15  Score=153.07  Aligned_cols=274  Identities=16%  Similarity=0.173  Sum_probs=199.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHH-H---HhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEE-V---IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS  150 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~-~---i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~  150 (368)
                      .++.+++.+.++++..+..|+.++..++... .+.... .   .-.++++.|++++.+++ +.+|..|+++|.++....+
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence            4788899999999999999999999887542 111110 0   01346788888888877 8999999999998887543


Q ss_pred             cchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          151 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ......+ .+.++.++.++.++++.++..++++|++++...+..-...+. ++++.++..+ .+.++.++..+++++..+
T Consensus       207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence            2111111 246788889999999999999999999999766543211111 2566777777 677899999999999999


Q ss_pred             hcCCCCCC--hhhhhchHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          231 CRGKPQPP--FDQVRPALPALAQLV-----------HS-----------NDEEVLTDACWALSYLSDGTNDKIQAVIEAG  286 (368)
Q Consensus       231 ~~~~~~~~--~~~~~~~~~~L~~lL-----------~~-----------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  286 (368)
                      +.......  ......++|.++..+           .+           .+..++..++.++..++...++.   ++ ..
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~  359 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH  359 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence            97531110  112345677777776           22           12356888999999888543221   11 13


Q ss_pred             ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          287 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       287 ~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      +++.+...+.++++.+|..|++++|+++.+........+ .++++.+..++.++ ++.+|..|+|++++++..
T Consensus       360 l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence            577788888889999999999999999998876544333 36899999999998 999999999999999974

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.63  E-value=1.4e-14  Score=121.21  Aligned_cols=189  Identities=22%  Similarity=0.202  Sum_probs=158.6

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017651          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~  195 (368)
                      .+.++.|+.+|.+++ +.+|..|+++|+.+..           .++++.|+.+|.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            456899999999888 9999999999998755           2578999999999999999999999999863      


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~  275 (368)
                           .+.++.|+..| .++++.++..++++|..+...          ..++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 13678888998 788999999999999998642          578999999999999999999999999853  


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                               ...++.|..++.++++.++..|+.+|+.+..  +         ..++.|..+++++ ++.+|..|.++|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2357889999999999999999999999853  1         3467788888888 89999999999999


Q ss_pred             HhcCCH
Q 017651          356 ITAGNR  361 (368)
Q Consensus       356 l~~~~~  361 (368)
                      +...+.
T Consensus       201 ~~~~~~  206 (211)
T 3ltm_A          201 HKSFNH  206 (211)
T ss_dssp             ------
T ss_pred             cCCCCC
Confidence            987443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.61  E-value=3.8e-14  Score=117.67  Aligned_cols=185  Identities=22%  Similarity=0.209  Sum_probs=159.0

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017651          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~  195 (368)
                      .+..+.++++|.+++ +.+|..|+++|+.+..           .++++.|+.+|.++++.++..++++|+.+...     
T Consensus        13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-----   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----   75 (201)
T ss_dssp             HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred             CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence            356889999999999 9999999999998765           25789999999999999999999999998532     


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~  275 (368)
                            +.++.|+..| .++++.++..++++|..+...          ..++.|..++.++++.++..++++|+.+..  
T Consensus        76 ------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           76 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence                  3678889988 778999999999999998542          578999999999999999999999999863  


Q ss_pred             hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          276 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       276 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                               .+.++.|..++.++++.++..|+++|+.+.  .+         ..++.|..++.++ ++.+|..|.++|.+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET  195 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence                     246888999999999999999999999993  22         2467788888888 89999999999998


Q ss_pred             Hh
Q 017651          356 IT  357 (368)
Q Consensus       356 l~  357 (368)
                      +.
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            75

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.60  E-value=1.4e-14  Score=135.86  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=195.7

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .++.++..+.++  ++..+..|+.+|..++........... -..+++.++.++.++. ++.+|..|+++++++.....+
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            578899999988  899999999999998763211111111 1247888999998872 389999999999997653211


Q ss_pred             chH-HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          152 NTK-VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       152 ~~~-~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      ... ......+++.+...+.+++..++..++++|..++...+..-...+..+.++.++..+ .+.+..++..+++++..+
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence            110 001111467777788888999999999999999865543211111114566666666 677889999999999998


Q ss_pred             hcCC---------------C--CCChh----hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          231 CRGK---------------P--QPPFD----QVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       231 ~~~~---------------~--~~~~~----~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                      +...               +  .....    ....++|.++..+..       +++.++..++.+|..++..-.+.   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~  363 (462)
T 1ibr_B          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (462)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---H
T ss_pred             HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---H
Confidence            8642               0  01111    124567777777743       23578999999999998653321   1


Q ss_pred             HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      + ..+++.+...+.++++.+|..|+.++|.++.+.. ......+ ..+++.+..++.++ ++.+|..|+|+|++++...
T Consensus       364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHG
T ss_pred             H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence            1 2467788888899999999999999999998764 2221122 46899999999998 8999999999999999743

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.59  E-value=9.2e-14  Score=116.27  Aligned_cols=188  Identities=21%  Similarity=0.197  Sum_probs=157.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.|++.|.++++.++..|+..|..+..            .+.++.|+.+|.+++ +.++..|+++|+.+..      
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            468999999999999999999999998732            246899999999887 9999999999999864      


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                           .++++.|+.+|.++++.++..++++|+++...           +.++.|+.++ .+++..++..++++|..+.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 25789999999999999999999999998532           2678899988 88899999999999999853 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                               ...++.|..++.++++.++..++++|+.+..  +         ..++.|..++.++++.+|..|..+|+++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     2578999999999999999999999999853  1         2467788888888999999999999999


Q ss_pred             hcCCh
Q 017651          314 VTGDD  318 (368)
Q Consensus       314 ~~~~~  318 (368)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            86554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.57  E-value=3.5e-13  Score=111.84  Aligned_cols=184  Identities=21%  Similarity=0.204  Sum_probs=157.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ...+.+++.|.++++.++..|+..|..+..            .+.++.|+++|.+++ +.++..|+++|+.+..      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            468899999999999999999999997732            246899999999887 9999999999998854      


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                           ..+++.|+.+|.++++.++..|+++|+++...           ..++.|+..+ .++++.++..++++|..+.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 14789999999999999999999999998532           2678888888 78899999999999999863 


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                               ...++.|..++.++++.++..++++|+.+..  +         ..++.|..++.++++.++..|..+|+.+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                     2688999999999999999999999999842  2         2467788888888999999999999987


Q ss_pred             h
Q 017651          314 V  314 (368)
Q Consensus       314 ~  314 (368)
                      -
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.54  E-value=4.2e-14  Score=136.78  Aligned_cols=267  Identities=18%  Similarity=0.151  Sum_probs=184.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +..+.+.+.++++..+..|+.++.++..   ....     ..+++.+.+++.+++ +.+|..|++++.++...+++..  
T Consensus        88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~-----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~--  156 (591)
T 2vgl_B           88 VNSFVKDCEDPNPLIRALAVRTMGCIRV---DKIT-----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV--  156 (591)
T ss_dssp             HHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGH-----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHH-----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence            4555666677777777777777766531   1111     224678999999888 9999999999999998666543  


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                       .+.+.++.+..+|.++++.++..|+++|+.++.+++..+......+.+..|+..+ .+.++..+..++.++..++... 
T Consensus       157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~-  233 (591)
T 2vgl_B          157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD-  233 (591)
T ss_dssp             -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS-
T ss_pred             -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC-
Confidence             2346789999999999999999999999999988763210011112466777777 5667777778888777766321 


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                         ......+++.+..++++.++.|+..|++++.++...   +++..+.+. ..+.+.|+.+++ +++.++..|+.+|+.
T Consensus       234 ---~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~  308 (591)
T 2vgl_B          234 ---DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINL  308 (591)
T ss_dssp             ---HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence               223457888999999999999999999999999742   233333322 245566666554 678888888888888


Q ss_pred             hhcCChHH----------------------HHHHH---Hc----CChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          313 IVTGDDFQ----------------------TQCII---TY----GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       313 l~~~~~~~----------------------~~~~~---~~----g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      ++...+..                      .+.+.   +.    .+++.|...+.+. +..+|++++|+|++++...+.
T Consensus       309 i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          309 IVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence            87421110                      00010   11    2455566666676 888999999999999876543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.52  E-value=2.3e-13  Score=131.38  Aligned_cols=267  Identities=14%  Similarity=0.102  Sum_probs=198.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.+++.+++++++++..|+.++..++..-............++|.+..++.+++ +.+|..++++|+.++.....  .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~--~  358 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK--D  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH--H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH--h
Confidence            36677778888888888888888888876432221111233557889999999888 89999999999998862211  1


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                       .....++|.+..++.+++++++..++.+|+.++.....  +. .....++.+..++ .+.+..++..++.++..++...
T Consensus       359 -~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~  433 (588)
T 1b3u_A          359 -NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHc
Confidence             11234789999999999999999999999988753221  11 1123577777777 6778899999999999988643


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      +..  .....++|.+..++.++++.++..++.+++.++......   .....+++.+..++.++++.+|..++++++.++
T Consensus       434 ~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~  508 (588)
T 1b3u_A          434 GVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             CHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            221  122457899999999999999999999999998542221   123457888888888888999999999999998


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ...+.   ..+...+++.+..++.++ ++.+|..++++++.++.
T Consensus       509 ~~~~~---~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGG
T ss_pred             HhcCH---HHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHH
Confidence            64322   123347889999999988 89999999999999986

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.51  E-value=6.1e-13  Score=128.44  Aligned_cols=225  Identities=13%  Similarity=0.132  Sum_probs=165.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ++.+...+.++++.++..|+..+..+...- ..   ......++|.|..++.+++ +.+|..|+.+|+.++...+.   .
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~-~~---~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~  237 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVL-EL---DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---E  237 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-CH---HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---H
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cH---HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---H
Confidence            555666777888999999999999887542 11   1223567899999998887 89999999999998874332   1


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      .....++|.+..++.+++..+|..++.+|+.++...+.   .......++.++.++ .++++.++..++++|..++...+
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence            22234788889999999999999999999999853211   112234688888888 77889999999999999998753


Q ss_pred             CCCh--hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          236 QPPF--DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       236 ~~~~--~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                      ....  .....++|.+..++.+.++.++..++++|+.++..-...   .....+++.+..++.++++.+|..++.+++.+
T Consensus       314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l  390 (588)
T 1b3u_A          314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCV  390 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            3211  234678899999999999999999999999987431111   11224667777777777777887777777776


Q ss_pred             hc
Q 017651          314 VT  315 (368)
Q Consensus       314 ~~  315 (368)
                      +.
T Consensus       391 ~~  392 (588)
T 1b3u_A          391 NE  392 (588)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.50  E-value=1e-12  Score=127.10  Aligned_cols=263  Identities=18%  Similarity=0.178  Sum_probs=195.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ..++.+++.+.+++...+..+...+..++...  +...    .-+++.+.+.|.+++ +.+|..|+.+|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~--~e~~----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ--PDMA----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS--HHHH----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--chHH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            35788899999999999988888888775431  1111    124678888888888 9999999999998863  4433


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .     ..++.+..++.++++.++..|++++++++..+|+.   +...++++.+..+| .++++.++..|+++|..++..
T Consensus       120 ~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 E-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             H-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             H-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            3     24678899999999999999999999998766653   22345778888888 788999999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          234 KPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       234 ~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .+.. ........++.|+..+...++..+...+.+++.++..++....     .+++.+..+|.+.++.++..|+++++.
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6543 2333456677788888888899999999999999866544332     357788888999999999999999999


Q ss_pred             hhcC---ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          313 IVTG---DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       313 l~~~---~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      +...   +++..+.+.. .+.+.|+.++. + ++++|..|+.+|+.++...|+
T Consensus       266 l~~~~~~~~~~~~~~~~-~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~  315 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLLK-KLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPE  315 (591)
T ss_dssp             SCCSCCBTTBSHHHHHH-HTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCS
T ss_pred             HhhccCCCHHHHHHHHH-HHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChH
Confidence            8742   3333333322 45566665543 4 677777777777777764443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.45  E-value=3.5e-12  Score=129.07  Aligned_cols=279  Identities=17%  Similarity=0.206  Sum_probs=196.9

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .++.++..+.++  ++..+..++.++..++..- .+..-.-.-..+++.+...+.+++ ++.+|..|+++|.+++.....
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            478888888888  8999999999999887532 111101112345777888888762 389999999999998863221


Q ss_pred             ch-HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          152 NT-KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       152 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      .. .......+++.+..++.+++.+++..++++|+.++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            11 0011112577788888888999999999999999875544322223334677777776 677889999999999888


Q ss_pred             hcCC----------------C-CC--Chh--hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          231 CRGK----------------P-QP--PFD--QVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       231 ~~~~----------------~-~~--~~~--~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                      +...                + ..  ...  ....++|.++..+..       +++.++..++.++..++....+.   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence            7641                1 11  111  225677778887752       34678999999999988543221   1


Q ss_pred             HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      + ..+++.+...+.++++.+|..|+++++.++.+.. +.....+ ..+++.++..+.++ ++.+|..|+|++++++...+
T Consensus       364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred             H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence            2 2456777788888899999999999999998765 3333333 35899999999988 89999999999999997543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.43  E-value=4.5e-12  Score=128.23  Aligned_cols=273  Identities=19%  Similarity=0.233  Sum_probs=195.2

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        76 i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      ++.+...+.++  +...+..|+.++..++..- .... .......+++.+..++.+++ ++++..++++|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            44456666665  6889999999999886531 1111 01111235777888887777 899999999999999865555


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------------hHHHHHhcCChHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----------------------CRDLVLSQGALIPLLAQ  210 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~----------------------~~~~i~~~~~i~~l~~~  210 (368)
                      ....+...+++.++..+.+.++.++..+++.+.+++.....                      .+..+  ...++.++..
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~  329 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT  329 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence            44555557889999988888999999999999998753210                      00011  1245667777


Q ss_pred             hcc------ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHH
Q 017651          211 LNE------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVI  283 (368)
Q Consensus       211 l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~  283 (368)
                      +..      +.+..++..+..++..++...+.   .....++|.+...+.+.++.++..++++++.++.+.. +.....+
T Consensus       330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~  406 (876)
T 1qgr_A          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  406 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            642      23567888999999998876431   3345678888888888999999999999999998754 4333333


Q ss_pred             HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          284 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       284 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                       .++++.++..|.++++.+|..|++++++++...+...  ...+ ..+++.++..+.++  +.++..|+|+|++++..
T Consensus       407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence             3578999999999999999999999999987644211  0111 14677788888663  78999999999999863

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.42  E-value=9.4e-12  Score=120.82  Aligned_cols=252  Identities=14%  Similarity=0.071  Sum_probs=184.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..+.+.++++++..+-.|++++.++..    +   .+. ..+++.+..+|.+++ +.+|..|+.++.++...+++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            45667777778888888888888887742    1   121 345888999999988 99999999999999986665432


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcc--------------ccchhHH
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------------RAKLSML  220 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~--------------~~~~~~~  220 (368)
                           +.++.+..+|.++++.++..|+++|+.++..++.....+.  ..++.++.+|..              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 6788888999999999999999999999987765433333  478888887743              2478888


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 017651          221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  294 (368)
Q Consensus       221 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~------~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  294 (368)
                      ..++.+|..++...|.    ....+.+.|..++.      +.+..+...+++++..+... +..    . ..++..|..+
T Consensus       252 ~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~-~~a~~~L~~~  321 (618)
T 1w63_A          252 VRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----R-VLAINILGRF  321 (618)
T ss_dssp             HHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----H-HHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----H-HHHHHHHHHH
Confidence            8999999999876431    12234445555442      23467899999999987643 221    1 1346778888


Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       295 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      |.++++.++..|+.+|+.++...+..    +. ...+.++.++.++ +..+|+.|..+|..++.
T Consensus       322 L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          322 LLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVN  379 (618)
T ss_dssp             HTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCC
T ss_pred             HhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcc
Confidence            88888999999999999998754432    22 3456677777777 77888888888888876

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.41  E-value=3.3e-12  Score=125.25  Aligned_cols=216  Identities=15%  Similarity=0.080  Sum_probs=159.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-ChhhHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGD-SPRCRD  196 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~-~~~~~~  196 (368)
                      +.++++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+++..|+++|.||+.+ .+..++
T Consensus        36 i~Pll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           36 ILPVLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             THHHHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            344667789988 8999999999999998 688888899999887765 578899999999999999999965 467888


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~  276 (368)
                      .+...|++++|..++..         ....+..+....... .......+           ..+...++.+|.+|+.+++
T Consensus       114 ~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~l~lL~~L~e~s~  172 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKL-LKAQQRLV-----------WDITGSLLVLIGLLALARD  172 (684)
T ss_dssp             HHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGS-CHHHHHHH-----------HHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHcChHHHHHHHHHh---------hHHHHhhhccccccc-cHHHHHHH-----------HHHHHHHHHHHHHHHhCCH
Confidence            99999999999999832         122222221111000 00001111           2345667788889998888


Q ss_pred             HHHHHHHHcCChHHHHHhcCC---CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--CCCCCccHHHHHHH
Q 017651          277 DKIQAVIEAGVCPRLVELLGH---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL--THSHKKSIKKEACW  351 (368)
Q Consensus       277 ~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll--~~~~~~~v~~~a~~  351 (368)
                      +....+...+.++.|+.+|.+   ....++..|+.+|..++..++...+.+.+.+....+..++  ... ....+..+|+
T Consensus       173 ~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~g  251 (684)
T 4gmo_A          173 EIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACG  251 (684)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHH
Confidence            888888888999999998833   2357999999999999999999888888876543322222  233 4557889999


Q ss_pred             HHHHHhc
Q 017651          352 TISNITA  358 (368)
Q Consensus       352 ~l~nl~~  358 (368)
                      +|.|+..
T Consensus       252 iL~Ni~~  258 (684)
T 4gmo_A          252 VLHNVFT  258 (684)
T ss_dssp             HHHHHHH
T ss_pred             HHHhHhh
Confidence            9999863

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.39  E-value=8.1e-12  Score=126.10  Aligned_cols=274  Identities=18%  Similarity=0.175  Sum_probs=192.0

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        76 i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      ++.+...+.++  ++.++..|+.++..++..- .... .......+++.|..++.+++ +.++..++.+|..++...++.
T Consensus       181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          181 LIAIVQGAQSTETSKAVRLAALNALADSLIFI-KNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            55566677766  7899999999999875321 1010 00011235777778887777 899999999999998754443


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-----------------hHHHHHhcCChHHHHHHhccc-
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-----------------CRDLVLSQGALIPLLAQLNER-  214 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-----------------~~~~i~~~~~i~~l~~~l~~~-  214 (368)
                      ....+...+++.+...+.+.+..++..++.++..++.....                 ...... ...++.++..+... 
T Consensus       259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN  337 (861)
T ss_dssp             CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            33333335677888888899999999999999998754211                 111111 22567777777432 


Q ss_pred             -----cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCCh
Q 017651          215 -----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVC  288 (368)
Q Consensus       215 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~  288 (368)
                           ++..++..+..+|..++...+   ......+++.+...+.+.++.++..++++++.++.+.. +.....+. .++
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il  413 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QAL  413 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence                 234788899999999887533   12345677888888888899999999999999997753 44333333 478


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~--~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      +.++..+.++++.+|..++++++.++.......  ...+ ..+++.++..+.+.  +.++..|||++.+++.+
T Consensus       414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH--PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC--hHHHHHHHHHHHHHHHh
Confidence            889999998999999999999999985421100  0011 14577788888653  78999999999999863

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.37  E-value=2.7e-12  Score=129.58  Aligned_cols=276  Identities=12%  Similarity=0.129  Sum_probs=189.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch--
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT--  153 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~--  153 (368)
                      ++.+.+.+.+.++..+..|+.++..++.+.........+ ..+++.++..+.+++ +.+|..++|+|+.++.......  
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            344555667888999999999999997543112222222 247889999998887 9999999999999986321110  


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hhhHHHHHhcCChHHHHHHhcc-ccchhHHHHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTL  227 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-----~~~~~~i~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L  227 (368)
                      ... -..+++.++..+.++ +.++..++|+|.+++...     ......+-  ..++.++..+.. +.+..++..++.++
T Consensus       449 ~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~--~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          449 QQH-LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH--HHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            011 124578888888776 899999999999997531     11222221  246677777743 33478999999999


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhcCC---------------CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 017651          228 SNFCRGKPQPPFDQVRPALPALAQLVHSN---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  292 (368)
Q Consensus       228 ~~l~~~~~~~~~~~~~~~~~~L~~lL~~~---------------d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~  292 (368)
                      ..++...+.........++|.++..+...               ...++..++.++..++..-........ ..+++.++
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHH
Confidence            99998754433334456777777766421               356788999999999865433211111 24677778


Q ss_pred             HhcCCCCc-chHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          293 ELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       293 ~lL~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                      ..+.+.+. .++..++.+++.++..........+. .+++.+...+.++ ++.++..|+++++.++...
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHT
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHh
Confidence            88877766 89999999999998654433333333 4788899988777 8889999999999988643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.34  E-value=4.7e-11  Score=115.93  Aligned_cols=258  Identities=16%  Similarity=0.125  Sum_probs=192.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ......++.+.+++.+.+..+...+..++..  ++..-.+    +++.|.+-|.+++ +.++..|+++|+++..  ++  
T Consensus        70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~--  138 (618)
T 1w63_A           70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLL----MTNCIKNDLNHST-QFVQGLALCTLGCMGS--SE--  138 (618)
T ss_dssp             GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHH----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HH--
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHH----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HH--
Confidence            3567888899999999888888888877643  2221112    4788888999888 8999999999999985  32  


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                        +. ...++.+..+|.++++.++..|+.+++++....|+...     ++++.+..++ .+.++.++..++++|..++..
T Consensus       139 --~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          139 --MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             --HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred             --HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence              22 24678889999999999999999999999987665322     4677777788 788999999999999999976


Q ss_pred             CCCCChhhhhchHHHHHHhhcC---------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc---
Q 017651          234 KPQPPFDQVRPALPALAQLVHS---------------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---  295 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~---------------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL---  295 (368)
                      .+.. ......++|.++.+|..               .++..+..++.+|+.++..+++..+     .+.+.|..++   
T Consensus       210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~  283 (618)
T 1w63_A          210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT  283 (618)
T ss_dssp             HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred             ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence            4321 22345677877776652               4788999999999999987654322     3444454443   


Q ss_pred             ---CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651          296 ---GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       296 ---~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                         ++.+..+...|++++..+... +...    . .+++.|..++.++ ++++|..|..+|+.++...|+.+
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~l~----~-~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~  348 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSE-SGLR----V-LAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV  348 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCC-HHHH----H-HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhcCCC-HHHH----H-HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH
Confidence               223457888999999987542 2211    1 3567888889988 89999999999999997666544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.34  E-value=7.7e-12  Score=117.04  Aligned_cols=271  Identities=13%  Similarity=0.031  Sum_probs=186.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCC-Ccch
Q 017651           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--DYPQLQFEAAWALTNIASGT-SENT  153 (368)
Q Consensus        77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~--~~~~v~~~a~~~L~~l~~~~-~~~~  153 (368)
                      ..++..+.++++.+ ..++.++..++... .+..   .-.+++|.|+..+.++  + +.++..|+.+|+.++... ++..
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~-~~~~---~w~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAE-IPVN---QWPELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHH-GGGT---CCTTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHh-cccc---ccHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhh
Confidence            34666677766666 66777777776532 1100   1246799999999987  6 899999999999999743 2221


Q ss_pred             HHHhhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          154 KVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nla~~~~~~~-~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      .... ..+++.+..++.++  +..++..|+++++++...-...- ........++.+...+ .+.+..++..++++|..+
T Consensus       167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vr~~~~~~l~~l  244 (462)
T 1ibr_B          167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKI  244 (462)
T ss_dssp             GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence            2222 24678888999887  79999999999999864322110 0000111244444455 677889999999999999


Q ss_pred             hcCCCCCChhhhh-chHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH---------------------HHHHHHHcCCh
Q 017651          231 CRGKPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDGTND---------------------KIQAVIEAGVC  288 (368)
Q Consensus       231 ~~~~~~~~~~~~~-~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~~  288 (368)
                      +...+..-..... .+++.++..+.+.+++++..+++.+..++....+                     .....+ ..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  323 (462)
T 1ibr_B          245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV  323 (462)
T ss_dssp             HHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence            9765432223345 7888888888888999999999999988754210                     111011 2356


Q ss_pred             HHHHHhcCC-------CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651          289 PRLVELLGH-------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       289 ~~L~~lL~~-------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      +.++..+..       +++.+|..|+.+++.++...+.   .++. .+++.+...+.++ ++.+|..|+++++.++.|..
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~-~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~  398 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPE  398 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCc
Confidence            667777743       3468899999999999875542   2222 5678888888888 99999999999999998654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.32  E-value=1.2e-11  Score=129.65  Aligned_cols=274  Identities=14%  Similarity=0.138  Sum_probs=199.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.++..+.+.|++.+..|...|.+.+... ......-....+++.+++.|.+++ +.+|..|+.+|+.++...++  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence            5889999999999999999999998876542 111111112346888999998777 99999999999999975443  1


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~------~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  228 (368)
                      . . ..+++.|+..+.++++.+|..++.+|+.++......      ... .....++.|+..+..+++..++..++.++.
T Consensus        83 ~-~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 Q-V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             H-H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             H-H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            1 1 236788888888888999999999999998543211      111 122368888888843578899999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC-CcchHHHHH
Q 017651          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPAL  307 (368)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~  307 (368)
                      .++...+..-......+++.+...|.++++.++..++.+++.++....+..   + ..+++.++..|... ++.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---F-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---H-HHHHHHHHHHhccCCchhHHHHHH
Confidence            999653322222446788889999999899999999999999997654321   1 24577777777443 357788899


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCH
Q 017651          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      .+++.++...+......+ ..+++.++..+.+. ++.+|..+.+++..++...+
T Consensus       236 ~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~  287 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP  287 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHCh
Confidence            999999865443221111 26789999999887 89999999999999987443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.21  E-value=2.9e-09  Score=103.18  Aligned_cols=301  Identities=13%  Similarity=0.132  Sum_probs=196.8

Q ss_pred             CCCchHHHhhhHHHHHHHHHHhhh----HHHHhhhhhc-----cCCCCCCCCCCCcchhhhhhhccHHHHHHhhcCCCHH
Q 017651           19 AVDADEGRRRREDNMVEIRKNKRE----ESLLKKRREG-----LQSQQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSS   89 (368)
Q Consensus        19 ~~~~~~~r~kr~~~~~~lRk~kr~----~~l~~kr~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~   89 (368)
                      .++.++-+++=.....++|+.-+.    ..-.|++.+.     .-.+.+.+             ......++.+.+++..
T Consensus        23 ~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s-------------~~~~~vvkl~~s~~~~   89 (621)
T 2vgl_A           23 CKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDID-------------FGHMEAVNLLSSNRYT   89 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCC-------------SCHHHHHHGGGCSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCc-------------hhHHHHHHHhcCCCHH
Confidence            345556666666666788877663    2223333211     00111101             3578889999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh
Q 017651           90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL  169 (368)
Q Consensus        90 ~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL  169 (368)
                      .+..+...+..++..+  +..-.+    +++.+.+-|.+++ +.++-.|+.+|+++..  ++.    .+ ..++.+.++|
T Consensus        90 ~Krl~YL~l~~~~~~~--~e~~~L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~----~~-~l~~~v~~~l  155 (621)
T 2vgl_A           90 EKQIGYLFISVLVNSN--SELIRL----INNAIKNDLASRN-PTFMGLALHCIANVGS--REM----AE-AFAGEIPKIL  155 (621)
T ss_dssp             HHHHHHHHHHHSCCCC--HHHHHH----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHH----HH-HHTTHHHHHH
T ss_pred             HHHHHHHHHHHHccCC--cHHHHH----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHH----HH-HHHHHHHHHH
Confidence            9998888888776432  221112    3677888888888 9999999999999965  332    22 4678889999


Q ss_pred             --CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017651          170 --ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP  247 (368)
Q Consensus       170 --~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  247 (368)
                        .+.++.|+..|+.++.++....|+.   +...+.++.+..+| .+.++.++..++.++..++...+.    .....+|
T Consensus       156 ~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~----~~~~~~~  227 (621)
T 2vgl_A          156 VAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPE----EFKTSVS  227 (621)
T ss_dssp             HCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHH----HHTTHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChH----HHHHHHH
Confidence              8899999999999999999766643   22246889999999 788999999999999999876432    1112233


Q ss_pred             HHH----HhhcCC-------------CHHHHHHHHHHHHHhhcCC-hHHHHH-------HH-------------------
Q 017651          248 ALA----QLVHSN-------------DEEVLTDACWALSYLSDGT-NDKIQA-------VI-------------------  283 (368)
Q Consensus       248 ~L~----~lL~~~-------------d~~v~~~a~~~l~~l~~~~-~~~~~~-------~~-------------------  283 (368)
                      .++    .++...             ++..+...+..++.++..+ ++....       ++                   
T Consensus       228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~  307 (621)
T 2vgl_A          228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKN  307 (621)
T ss_dssp             HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHH
Confidence            222    222111             3455555555555554321 111110       00                   


Q ss_pred             -------------------HcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC-CCCCc
Q 017651          284 -------------------EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKK  343 (368)
Q Consensus       284 -------------------~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~-~~~~~  343 (368)
                                         -..++..|..+|.++++.++..|+..|..++...+. .. ++. .....++.+|. ++ +.
T Consensus       308 aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~-d~  383 (621)
T 2vgl_A          308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTER-DV  383 (621)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCC-CH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCC-CH
Confidence                               012355666777777888888888888888876531 11 222 45677888888 77 88


Q ss_pred             cHHHHHHHHHHHHhc
Q 017651          344 SIKKEACWTISNITA  358 (368)
Q Consensus       344 ~v~~~a~~~l~nl~~  358 (368)
                      .+|..|.-++..++.
T Consensus       384 ~Ir~~aL~lL~~l~~  398 (621)
T 2vgl_A          384 SVRQRAVDLLYAMCD  398 (621)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHcC
Confidence            999999999998874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.10  E-value=4.2e-09  Score=82.13  Aligned_cols=185  Identities=15%  Similarity=0.217  Sum_probs=151.1

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCC
Q 017651          158 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP  237 (368)
Q Consensus       158 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  237 (368)
                      +..++..++.+|.++-..++..|+..+.+++...|+..+.     .+..|+.++..+....+...+..+++.++.-+|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            3457888999999999999999999999999988876554     356677777778888888888999999987654  


Q ss_pred             ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC
Q 017651          238 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD  317 (368)
Q Consensus       238 ~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~  317 (368)
                        ..+.+.+|.+..-..-.|++++.....+|..++..+++...     +++.-+..++.+++..-+..|+..|+.+....
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence              45568888888888888999999999999999988776654     34667888888888888888888888887655


Q ss_pred             hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          318 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       318 ~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      .....     ..+|.|..+|.+. +.-+|..|.-+|.|++.-++.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npk  214 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDK  214 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHH
Confidence            43332     5789999999998 899999999999999988876

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.08  E-value=1.1e-10  Score=114.51  Aligned_cols=195  Identities=12%  Similarity=0.087  Sum_probs=145.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcC-CCc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQFEAAWALTNIASG-TSE  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~v~~~a~~~L~~l~~~-~~~  151 (368)
                      +.+.++++.|+++++..|..|+.+|.+++..  ......+...|++..++ .+|.+++ .+++.+|+++|.|++.+ ..+
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCch
Confidence            3577888999999999999999999999752  45566677888887654 5677777 89999999999999963 467


Q ss_pred             chHHHhhCCChHHHHHhhCCCC---------------------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017651          152 NTKVVIDHGAVPIFVKLLASPS---------------------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~---------------------~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~  210 (368)
                      ....++..|++++|..++.+..                     ..+.+.++++|++||..+....+.+...+.++.++..
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            7788999999999999885310                     2355678899999998777777888888899999998


Q ss_pred             hcccc--chhHHHHHHHHHHHhhcCCCCCChhhh-h---chHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          211 LNERA--KLSMLRNATWTLSNFCRGKPQPPFDQV-R---PALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       211 l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~---~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      |....  ..++...++.+|..++.+.+....... .   .++..+..+..+.+ ..+..+++.+.|+.
T Consensus       191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence            84332  468999999999999987532111111 1   23334444444433 34667788888864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.05  E-value=1.8e-09  Score=113.26  Aligned_cols=275  Identities=13%  Similarity=0.171  Sum_probs=188.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc----hHHHHhcCcHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcCC
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGT  149 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~----~~~~i~~g~i~~Lv~lL~~-~~~~~v~~~a~~~L~~l~~~~  149 (368)
                      .++.++..+.++++..+..|+.++..++..-....    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            36777888888888888888888888875432210    1111234578999999984 55 899999999999998532


Q ss_pred             CcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          150 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      ........ ...++.|+..|.+++..++..|+.+|+.++...+.   .+. ...++.++..+....+..++..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            22111111 24667788888888999999999999999976532   122 23578888888554445677788889998


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC------------
Q 017651          230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------------  297 (368)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------------  297 (368)
                      ++...+..-......++|.+...+.+++++++..+++++..++....+.....+ ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887643322233467999999999988999999999999998865332111111 1234444444421            


Q ss_pred             -------------------------CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHH
Q 017651          298 -------------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (368)
Q Consensus       298 -------------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~  352 (368)
                                               ..+.+|..|+.+++.++...+.....++ ..+++.+...+.+. ++.+|..+..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1245688999999999875543333344 36788888888887 89999999998


Q ss_pred             HHHHhc
Q 017651          353 ISNITA  358 (368)
Q Consensus       353 l~nl~~  358 (368)
                      +..++.
T Consensus       398 l~~l~~  403 (1230)
T 1u6g_C          398 YLSLLK  403 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.05  E-value=1.2e-07  Score=73.98  Aligned_cols=216  Identities=16%  Similarity=0.188  Sum_probs=169.2

Q ss_pred             hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 017651          115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      +..++..++.+|.++- ..++..|+.++.+++...++....+     +..|+.+++ ++...+......++|.++...|+
T Consensus        30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            5567899999999877 8999999999999999777765544     345666654 66778878899999999988876


Q ss_pred             hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 017651          194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD  273 (368)
Q Consensus       194 ~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~  273 (368)
                      .-+.     .+|.+..-+ .-.++.++.+..++|..+.+..|    ....+++.-+..++.+.|..-+..++..++.+..
T Consensus       104 ~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            4222     455555555 44599999999999999998764    3445677788889998897778888888888776


Q ss_pred             CChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          274 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      +.....     .-+++.|..+|.+.+.-+|..|+.++++++..++..+..+.+      -+.-+.+. +..+++...-.|
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~-S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDT-SSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCS-CHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCc-HHHHHHHHHHHH
Confidence            655443     346899999999999999999999999999999976553333      45556777 888999999999


Q ss_pred             HHHhc
Q 017651          354 SNITA  358 (368)
Q Consensus       354 ~nl~~  358 (368)
                      +.++.
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.00  E-value=4.1e-08  Score=96.84  Aligned_cols=240  Identities=15%  Similarity=0.128  Sum_probs=172.4

Q ss_pred             HHHHHHhhcCCC--------HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           76 LPAMVAGVWSDD--------SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        76 i~~l~~~l~~~~--------~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      +..|...+.+++        +.++..|+..|.....+..++        .+++.|...|.+++ +.++..|+.+|+.+..
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v  501 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence            455566665444        556667777777654443221        23677888888777 6778889999998865


Q ss_pred             CCCcchHHHhhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017651          148 GTSENTKVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWT  226 (368)
Q Consensus       148 ~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~  226 (368)
                      ++...       .++..|++.+ .+.+..++..++.+|+.+....++         .++.+++.|..+.++-++..++.+
T Consensus       502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            54321       1344555543 456789999999999999877654         578888888777888888888888


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHH
Q 017651          227 LSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLI  304 (368)
Q Consensus       227 L~~l~~~~~~~~~~~~~~~~~~L~~lL-~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~  304 (368)
                      ++.-+-+..+      ...++.|+..+ .+.+..++..|+.+|+.+..+.++         .++.++.+| .+.++.+|.
T Consensus       566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~  630 (963)
T 4ady_A          566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC  630 (963)
T ss_dssp             HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred             HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence            8765555322      13455444444 455788999999999998877542         356666655 677899999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          305 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       305 ~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      .|..++|.++.+++..       .+++.|..+..+. +..||..|+.+|+.+.+|+.+.
T Consensus       631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTT
T ss_pred             HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccc
Confidence            9999999999887631       2355677778888 9999999999999999986654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.98  E-value=4.1e-08  Score=95.08  Aligned_cols=255  Identities=15%  Similarity=0.132  Sum_probs=178.0

Q ss_pred             HHHHHHhh--cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           76 LPAMVAGV--WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        76 i~~l~~~l--~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ++.+.+.+  .+.++.++..|+.++.++....  +.  .+...++++.+.++|.+++ +.++..|+.++..++..+++. 
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~--~~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~-  221 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PD--LVPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEE-  221 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GG--GCCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHH-
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hh--hcCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHH-
Confidence            45666677  6777888888888888887642  11  1112478999999998877 999999999999999865432 


Q ss_pred             HHHhhCCChHHHHH----hhCCC-------------CHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhc---
Q 017651          154 KVVIDHGAVPIFVK----LLASP-------------SDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLN---  212 (368)
Q Consensus       154 ~~~~~~g~i~~L~~----lL~~~-------------~~~v~~~a~~~L~nla~~-~~~~~~~i~~~~~i~~l~~~l~---  212 (368)
                        +  ...+|.++.    ++...             ++-.+...+..|+.++.. ++..++.+.+  .+..++..+.   
T Consensus       222 --~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~  295 (621)
T 2vgl_A          222 --F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP  295 (621)
T ss_dssp             --H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred             --H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence              1  123444443    33221             577888999999999863 4555554443  3444544331   


Q ss_pred             -----cccch--hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651          213 -----ERAKL--SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA  285 (368)
Q Consensus       213 -----~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  285 (368)
                           ++.+.  .+...++.++..+..     .......+++.|..+|.+.+++++..++.+|..++...+.. . ++ .
T Consensus       296 ks~~l~~~n~~~aVl~ea~~~i~~l~~-----~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~  367 (621)
T 2vgl_A          296 KSKKVQHSNAKNAVLFEAISLIIHHDS-----EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-K  367 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-H
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-H
Confidence                 12233  778888888888751     22344567888999999899999999999999999765421 1 22 2


Q ss_pred             CChHHHHHhcC-CCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          286 GVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       286 ~~~~~L~~lL~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .....++..|. +++..++..++.++..++..  .+.+.+     +..|...+.+. +.+++.+++.+++.++.
T Consensus       368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I-----v~eL~~yl~~~-d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          368 THIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI-----VAEMLSYLETA-DYSIREEIVLKVAILAE  433 (621)
T ss_dssp             TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH-----HHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH-----HHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            45777888888 88999999999999999853  344433     44566666666 78899999998888874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.98  E-value=7.3e-09  Score=88.24  Aligned_cols=185  Identities=13%  Similarity=0.103  Sum_probs=141.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASGTSENTKVV  156 (368)
Q Consensus        78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  156 (368)
                      .+.+.+.+.++..+..|+..|..++.+... ..... -..+++.|..++. +++ +.++..|+.+++.++..-.......
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            478888999999999999999999876211 11000 1245788888995 777 8999999999999996322222222


Q ss_pred             hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-C
Q 017651          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-P  235 (368)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~  235 (368)
                      +. .++|.++..+.+.+..+++.+..+|.+++...+ + +     ..++.+...+ .+.++.++..++..|..+.... +
T Consensus        96 ~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 AS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESL-SNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCC
Confidence            22 478999999999999999999999999987643 2 1     1567788888 6778999999999999965543 3


Q ss_pred             C-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          236 Q-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       236 ~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      . ........++|.+..++.+.+++++..|..+++.++..
T Consensus       167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2 22344578999999999999999999999999988843

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.97  E-value=3.1e-09  Score=90.58  Aligned_cols=184  Identities=12%  Similarity=0.149  Sum_probs=139.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-hhhHHH
Q 017651          120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDS-PRCRDL  197 (368)
Q Consensus       120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~-~~~~~~  197 (368)
                      +.+.+.+.+.+ ...|..|+..|..+..+.+....... ..+++.|...+. +.+..++..|+.+++.|+..- +.+...
T Consensus        18 ~~l~~~l~s~~-w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKK-WTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSS-HHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCC-HHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            44778888877 89999999999999875333211101 135778888884 899999999999999998432 122222


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-Ch
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TN  276 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~  276 (368)
                      +..  +++.++..+ .+.+..++..+..++..++...+      ...++|.+...+.+.++.++..++..|+.+... .+
T Consensus        96 ~~~--ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 ASA--CVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            222  688888888 77889999999999999987532      356889999999999999999999999996544 22


Q ss_pred             HH-HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          277 DK-IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       277 ~~-~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      +. ....+ ..+++.++..|.++++.+|..|..+++.++.
T Consensus       167 ~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          167 TALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            21 11222 2578999999999999999999999999975

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.95  E-value=1e-07  Score=84.69  Aligned_cols=252  Identities=11%  Similarity=0.047  Sum_probs=164.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..+++.+.++|...+.-....+..+... .++.+  +    +++.|.+-+.+++ +-+|-.|+++|++|...  +..+
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~~--~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITDS--TMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCCT--TTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCCH--HHHH
Confidence            467788899999999999888888776543 12211  2    4788999999998 99999999999999883  3322


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                           .+.+.+.+.|.+.++.|+..|+.+...+....|+..    + ++++.+-+++ .+.++.++.+++.++..++..+
T Consensus       139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence                 245778889999999999999999999998887642    2 5888898888 7889999999999999999753


Q ss_pred             CCCChhhhhchHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651          235 PQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~---d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  311 (368)
                      +        ..+..++..+...   ++-.+...+..+..++..++..    ....+++.+..+|++.++.|.-.|+++|.
T Consensus       208 ~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~  275 (355)
T 3tjz_B          208 R--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIV  275 (355)
T ss_dssp             H--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHT
T ss_pred             h--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            1        1333344444332   4666666666666665543111    12356778888899999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      .+...+..    +. ..++..+..++.++ ++.+|-.|...|..++...|+.++
T Consensus       276 ~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~  323 (355)
T 3tjz_B          276 NLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT  323 (355)
T ss_dssp             C----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------
T ss_pred             hccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH
Confidence            88653221    22 24456677778888 889999999999888887777665

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.91  E-value=3.2e-08  Score=87.96  Aligned_cols=243  Identities=13%  Similarity=0.088  Sum_probs=139.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ....+.+.++++++-.+-.|++.+.++...   .-.+.     +.+.+.+.|.+.+ |-|+..|+.+...+....++.  
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~~-----l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~--  173 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQA-----IERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDV--  173 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHHH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHH--
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHH--
Confidence            477888999999999999999999999642   22333     4677888888888 999999999999999876653  


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--chhHHHHHHHHHHHhhc
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWTLSNFCR  232 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~l~~  232 (368)
                        ++ +.++.+-.++.+.++-++.+|+.+|..+...+..         .+..++..+....  ++-.+...+..+..++.
T Consensus       174 --v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~  241 (355)
T 3tjz_B          174 --VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE  241 (355)
T ss_dssp             --HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred             --HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence              33 6889999999999999999999999999876532         3455555553322  34444444444444443


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .+   .......+++.+..+|++.++.|..+|+.+|.++...+...    . ..++..+..+|+++++.++-.|++.|..
T Consensus       242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~~  313 (355)
T 3tjz_B          242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred             cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            32   11223467788888999999999999999999987532221    1 2346667778888999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~  354 (368)
                      ++...+...+     ..-.-+..++.++ +..+.-.|..+|-
T Consensus       314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittll  349 (355)
T 3tjz_B          314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTLL  349 (355)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHhh
Confidence            9987775443     2344467778888 7777666665553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.90  E-value=1.6e-08  Score=86.32  Aligned_cols=190  Identities=12%  Similarity=0.174  Sum_probs=141.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHH-HhcCCCcchHHHhh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 017651          122 FVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVID-HGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDS--PRCR-  195 (368)
Q Consensus       122 Lv~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nla~~~--~~~~-  195 (368)
                      +.+.+.+.+ +.-|.+|+..|.. ++.+++.......+ ...+..|...+ ++.+..++..|+.+|+.|+.+-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            556677777 8999999999999 87654432210011 13467778888 7889999999999999998432  2232 


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      .....  .++.++..+ .+....++..+..++..++...+.... .....+++.|...|.+.++.++..++.+|..++..
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            33333  688888888 677788999999999999986422111 11457889999999999999999999999999865


Q ss_pred             Ch---HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          275 TN---DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       275 ~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      ..   ......+...+++.+.+++.+.++.+|..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            43   333333335789999999999999999999999999873

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.87  E-value=2.6e-07  Score=75.28  Aligned_cols=187  Identities=16%  Similarity=0.156  Sum_probs=151.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..++.++...|+..+..|+..+.+++..- +......+-..+++.++.++.+.+ ..+...|+.||..+..+.+-..+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHH
Confidence            5778899999999999999999999999863 333444455667999999999888 89999999999999997776666


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .+..  ++..|..++.++++-+++.++..++.+-.-++ .+      +.+..+.+++ .+.+..++..+..++.+++...
T Consensus       112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhccc
Confidence            6664  57889999999999999999999999933222 11      2467788888 8999999999999999999865


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~  275 (368)
                      ..+.  ....++.-+-.+|++.|+.++.-|+.++-.+...+
T Consensus       182 ~D~~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          182 ADSG--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SSCC--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CCHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            3322  23456667778889999999999999999988663

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.83  E-value=6.5e-10  Score=85.19  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             cCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 017651          116 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR  195 (368)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~  195 (368)
                      ...++.++.+|.+++ +.+|..|+++|+.+..            ..++.|+.+|.++++.++..++|+|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            445788999999888 8999999999986643            136899999999999999999999999863  1   


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL  271 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l  271 (368)
                            ..++.|+..+ .+++..++..++|+|..+..          ...++.|..++.++++.|+..++++|+.+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  1478899988 78899999999999999863          25789999999999999999999998753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.82  E-value=6.1e-08  Score=82.68  Aligned_cols=197  Identities=12%  Similarity=0.143  Sum_probs=142.8

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhhHHHHHh-cCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh--
Q 017651          164 IFVKLLASPSDDVREQAVWALGN-VAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--  239 (368)
Q Consensus       164 ~L~~lL~~~~~~v~~~a~~~L~n-la~~~~~~~~~i~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--  239 (368)
                      .+...+.+.+..-|..++..|+. ++.+.+.......+ ...+..+...+..+.+..++..++.++..|+.+-....+  
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667788999999999999999 87543322100001 123566667775677899999999999999976431233  


Q ss_pred             hhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-
Q 017651          240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-  318 (368)
Q Consensus       240 ~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-  318 (368)
                      .....++|.++..+.+..+.|+..+..++..++...+.......-..+++.|...|.+.++.++..++.+|+.++.... 
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            3456789999999998889999998888888875321100000001257788899999999999999999999986554 


Q ss_pred             --HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCH
Q 017651          319 --FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNR  361 (368)
Q Consensus       319 --~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~  361 (368)
                        ......+...++|.+..++.++ ++.+|..|..+++-++.  |..
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~  225 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMN  225 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSG
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHH
Confidence              3333344357899999999999 99999999999999885  553

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.81  E-value=8.9e-08  Score=77.96  Aligned_cols=183  Identities=19%  Similarity=0.154  Sum_probs=147.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  238 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  238 (368)
                      +.+..|..+|.+.++.++..++.+|.++...-+. .+...++ ..++.++.++ .+.|..+.-.|+.|+..|..+.|-. 
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~-  109 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMG-  109 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBC-
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCC-
Confidence            4688899999999999999999999999876433 3333333 3789999999 8899999999999999999886433 


Q ss_pred             hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      ...+..+..++..++.+.++-++.+++..++.+--.....       +++..+..++.+.+..++..+++++.++++.+.
T Consensus       110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            3344568889999999999999999999999994332221       346778888899999999999999999998653


Q ss_pred             --HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          319 --FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       319 --~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                        +...     +++.-+..+|++. ++.+++-|.-++-++..
T Consensus       183 D~~i~~-----~I~~eI~elL~~e-D~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          183 DSGHLT-----LILDEIPSLLQND-NEFIVELALDVLEKALS  218 (265)
T ss_dssp             SCCCGG-----GTTTTHHHHHTCS-CHHHHHHHHHHHHHHTT
T ss_pred             CHHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence              2222     5666788899999 99999999999988875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.76  E-value=1.2e-06  Score=86.51  Aligned_cols=247  Identities=16%  Similarity=0.137  Sum_probs=173.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.|...+..++......|+..+..+..++.+..        ++..|++.+....+..++..++.+|+.+..+.++   
T Consensus       473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~--------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---  541 (963)
T 4ady_A          473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE--------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---  541 (963)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH--------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH--------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence            46777888877777666677788877655542222        2455666554443478999999999999887665   


Q ss_pred             HHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          155 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                            .++.++..|. +.++.++..++.+++--.......       ..++.|+..+..+.+..+++.|+.+|+.+..+
T Consensus       542 ------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g  608 (963)
T 4ady_A          542 ------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR  608 (963)
T ss_dssp             ------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred             ------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence                  4556666554 578899999998887554332211       15777888876777889999999999998766


Q ss_pred             CCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          234 KPQPPFDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~-lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      .+        ..++.++. ++++.|+.++..++++++.++.+.+..       .++..|..++++++..++..|+.+||.
T Consensus       609 ~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~  673 (963)
T 4ady_A          609 DY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSM  673 (963)
T ss_dssp             SC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             CH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            43        23555555 446789999999999999998765432       236677888889999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCCC-CCccHHHHHHHHHHHHhcCCH
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      +..++.+....-+ .+++..|.....+. +++..+-.|+.+.+-+-+|..
T Consensus       674 Ig~gtnna~~~rv-a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~  722 (963)
T 4ady_A          674 ILIQQTEKLNPQV-ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR  722 (963)
T ss_dssp             HSTTCCTTTCTTH-HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred             HhcCCccccchHH-HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence            9876553311000 02345566666542 267788888888888877643

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.68  E-value=1.9e-09  Score=82.55  Aligned_cols=121  Identities=19%  Similarity=0.213  Sum_probs=93.9

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCC
Q 017651          159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP  238 (368)
Q Consensus       159 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  238 (368)
                      ...++.+..+|.++++.++..|+++|+++...            .++.|+..| .++++.++..++|+|.++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence            35688899999999999999999999987421            258888888 68899999999999998763      


Q ss_pred             hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHh
Q 017651          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI  313 (368)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl  313 (368)
                          ...++.|..+|.++++.|+..++++|+.+..  +         +.++.|..+|.++++.++..|+++|+.|
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                2578999999999999999999999999862  1         2477889999988999999999998754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.55  E-value=2.1e-06  Score=78.14  Aligned_cols=233  Identities=13%  Similarity=0.145  Sum_probs=155.0

Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhc--CcHHHHHHhhcC----------------CCCHHHHHHHH
Q 017651           79 MVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQS--GVVPRFVEFLMR----------------EDYPQLQFEAA  139 (368)
Q Consensus        79 l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~--g~i~~Lv~lL~~----------------~~~~~v~~~a~  139 (368)
                      ++..|.+ ++...+..++.++..++..  ...+..+.+.  +++|.++.+++.                +-..+++++++
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~--~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcc--hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4445554 3455677788888888763  3444455543  347777655441                10267899999


Q ss_pred             HHHHHHhcCCCcchHHHhhCCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh----h-hHHHHHhcCChHHHHHHh
Q 017651          140 WALTNIASGTSENTKVVIDHGAV--PIFVKLLAS-PSDDVREQAVWALGNVAGDSP----R-CRDLVLSQGALIPLLAQL  211 (368)
Q Consensus       140 ~~L~~l~~~~~~~~~~~~~~g~i--~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~----~-~~~~i~~~~~i~~l~~~l  211 (368)
                      .|++-++.. ++....+...++.  +.|+..++. ....+.+.++.+|.|+....+    . ..+.++..++ ++++..|
T Consensus       250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            999999994 5666667666643  566666664 568999999999999997653    1 2223333333 5666666


Q ss_pred             cc--ccchhHHHHHHHHHHHhh---------------------cCCCCCCh---------h---hhhchHHHHHHhhcC-
Q 017651          212 NE--RAKLSMLRNATWTLSNFC---------------------RGKPQPPF---------D---QVRPALPALAQLVHS-  255 (368)
Q Consensus       212 ~~--~~~~~~~~~a~~~L~~l~---------------------~~~~~~~~---------~---~~~~~~~~L~~lL~~-  255 (368)
                      ..  -.|+++....-+....|-                     ++.|.-..         .   ....++..|+++|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            43  236665554333322221                     22111100         0   012467788999973 


Q ss_pred             ---------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          256 ---------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       256 ---------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                               .|+.+..-||.=|+.++.+.+.....+-+.|+=..+++++.+++++++..|+.|++.+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                     478899999999999998877776666677999999999999999999999999998764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.51  E-value=4.7e-06  Score=75.92  Aligned_cols=235  Identities=16%  Similarity=0.146  Sum_probs=159.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC--ChHHHHHhhCC-----------------CCHHHHHHHH
Q 017651          121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLAS-----------------PSDDVREQAV  181 (368)
Q Consensus       121 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~-----------------~~~~v~~~a~  181 (368)
                      .++..|......+.+.-++.+|..+.. .++.+..+.+.+  .++.++.++..                 ....++.+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            566666664325667789999999988 477787777643  35666543331                 1356788999


Q ss_pred             HHHHHhhCCChhhHHHHHhcCCh--HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChh-----hh-hchHHHHHHhh
Q 017651          182 WALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-----QV-RPALPALAQLV  253 (368)
Q Consensus       182 ~~L~nla~~~~~~~~~i~~~~~i--~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-----~~-~~~~~~L~~lL  253 (368)
                      .+++-++.+.+ ..+.+...+..  +.|+..++....+.+.+-++.+|.|+....+.....     .. .++ +.++..|
T Consensus       250 l~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            99999988765 45566655533  566677766778999999999999999865322111     11 234 3455555


Q ss_pred             c---CCCHHHHHHHHHHHHHhhc---------------------CChHH---------HHHHHH--cCChHHHHHhcCC-
Q 017651          254 H---SNDEEVLTDACWALSYLSD---------------------GTNDK---------IQAVIE--AGVCPRLVELLGH-  297 (368)
Q Consensus       254 ~---~~d~~v~~~a~~~l~~l~~---------------------~~~~~---------~~~~~~--~~~~~~L~~lL~~-  297 (368)
                      .   -.|+++..+.-...-.|-.                     -++.+         ...+.+  ..++..|+.+|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            3   2467666554333322211                     11111         011111  1457888999963 


Q ss_pred             ---------CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          298 ---------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       298 ---------~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                               .++.+..-||.=||.++...|.....+-+.|+=..++.++.++ +++||.+|..|+.-+...
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence                     3688899999999999999998888777889999999999999 999999999999887653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.18  E-value=0.00058  Score=68.47  Aligned_cols=263  Identities=12%  Similarity=0.116  Sum_probs=177.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCC-CCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      .+..+.+.+......  ..|+..+..++.... .++.+. .-.+++|.++..+.+.. ..++..|..++..+...-+...
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a  130 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP-YIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVA  130 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH-HHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc-chHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHH
Confidence            455666666543322  677788888874331 223322 22267999999998877 7899988888888776322222


Q ss_pred             HHHhhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          154 KVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      .    ..++|.|+..|.+. ....+..|+.++..|+...+..-..-+ ...+|.+...+ .+..+++...+..++..+|.
T Consensus       131 ~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          131 I----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETM-WDTKKEVKAAATAAMTKATE  204 (986)
T ss_dssp             H----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGG
T ss_pred             H----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhc-ccCcHHHHHHHHHHHHHHHh
Confidence            1    24589999988754 589999999999999976653222111 12566666776 77889999999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN--DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      --.+.+   +.+.+|.|++.+.+++.  ...+...|+.-+.-..  .-.-.+    .+|.|.+-|...+..+...++-++
T Consensus       205 ~~~n~d---~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~  275 (986)
T 2iw3_A          205 TVDNKD---IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVII  275 (986)
T ss_dssp             GCCCTT---TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             cCCCcc---hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEE
Confidence            544443   35789999999987743  4444455544433221  111112    367777778888888899999999


Q ss_pred             HHhhc--CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHh
Q 017651          311 GNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       311 ~nl~~--~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~  357 (368)
                      .|||.  .++.... -+-..++|.+-.....--+|++|.-|..++.-+.
T Consensus       276 ~n~~~lv~~~~~~~-~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          276 DNMCKLVEDPQVIA-PFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHTTCCCHHHHH-HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             cchhhhcCCHHHHh-hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            99986  3444444 3334788888887776558899988888777763

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.16  E-value=5.1e-05  Score=65.81  Aligned_cols=157  Identities=15%  Similarity=0.117  Sum_probs=124.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ...+++.|.+++......++..|..+++.+ ...+.+++..+++..|+......+ ...+..++.+|.++-.. ......
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~-v~Gm~g  196 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLF-VDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhc-cccccc
Confidence            567888888888889999999999987754 788899999999999999999887 89999999999999884 334444


Q ss_pred             Hh-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--------cC--ChHHHHHHhc--cccchhHHHH
Q 017651          156 VI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--------QG--ALIPLLAQLN--ERAKLSMLRN  222 (368)
Q Consensus       156 ~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--------~~--~i~~l~~~l~--~~~~~~~~~~  222 (368)
                      ++ ....|..+..++.+.+..|...|+.+|..++..++.....+.+        .|  .+..++.+|.  ...|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            44 4457888888999888999999999999998766543333322        11  3778899994  2568899988


Q ss_pred             HHHHHHHhhcCCC
Q 017651          223 ATWTLSNFCRGKP  235 (368)
Q Consensus       223 a~~~L~~l~~~~~  235 (368)
                      +...+-.+...-|
T Consensus       277 amtLIN~lL~~ap  289 (339)
T 3dad_A          277 TVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCC
Confidence            8887777666543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.04  E-value=0.00014  Score=72.79  Aligned_cols=271  Identities=14%  Similarity=0.150  Sum_probs=185.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--  151 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--  151 (368)
                      ..+..+++.+...+......++..+..++.+....   ..+..+++..|.+.+.+.. ..  +.|+.++..++.....  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            34666777777655666677888888877643111   1222367888888888765 23  8899999999953321  


Q ss_pred             chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      ..+.++- +.+|.++..+.+....++..|-.++..|+..-+...  +  ...+|.|+..|...........++.++..|+
T Consensus        88 ~~e~~~~-~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~  162 (986)
T 2iw3_A           88 SVEPYIV-QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMV  162 (986)
T ss_dssp             TTHHHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             CcccchH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            2232222 578999999998889999988888888875433221  1  2368899999955557888999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (368)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  309 (368)
                      ...|......+..++|.+.+.+.+..++|...|..++..+|.-  +.+.      ...+|.|+..+.+++.  ...++..
T Consensus       163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHH
Confidence            7643222334467888888888888899999998888888742  3332      2468888888877643  4556666


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhh
Q 017651          310 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQV  366 (368)
Q Consensus       310 l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~  366 (368)
                      |+.-+.-.. .....+. =++|.|.+-|... ...+++.++-++.|+|.  .+|..+..
T Consensus       235 l~~~tfv~~-v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~  290 (986)
T 2iw3_A          235 LGATTFVAE-VTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAP  290 (986)
T ss_dssp             HTTCCCCSC-CCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             hhcCeeEee-ecchhHH-HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhh
Confidence            665433222 1111111 1367788888877 88899999999999997  67766544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.03  E-value=0.00019  Score=62.21  Aligned_cols=177  Identities=14%  Similarity=0.111  Sum_probs=128.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 017651          120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL  199 (368)
Q Consensus       120 ~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~  199 (368)
                      ..+++-|.+.+ ...+..++.-|..+...+.+....++..+++..|+......+...+..++.+|++|..+....-..+-
T Consensus       121 ~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            44566666666 68889999999996655789999999999999999999999999999999999999877443323333


Q ss_pred             hcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhh-----------chHHHHHHhhc---CCCHHHHHHHH
Q 017651          200 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-----------PALPALAQLVH---SNDEEVLTDAC  265 (368)
Q Consensus       200 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----------~~~~~L~~lL~---~~d~~v~~~a~  265 (368)
                      ...+|..+..++ .+.+..+.+.++..|..++...+........           .-++.|+.+|+   +.|.+++.+++
T Consensus       200 ~~~fI~~lyslv-~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLC-ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            445677888888 4678999999999999999875322211110           12568889997   67899999999


Q ss_pred             HHHHHhhcCCh--H----HHHHHHHcCChHHHHHhcCCC
Q 017651          266 WALSYLSDGTN--D----KIQAVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       266 ~~l~~l~~~~~--~----~~~~~~~~~~~~~L~~lL~~~  298 (368)
                      ..|..+..+.+  +    ..+.+-+.|+=..+.++|+..
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            98887765533  2    222233345555666667554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.99  E-value=0.00016  Score=73.88  Aligned_cols=221  Identities=11%  Similarity=0.112  Sum_probs=126.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC-----CChHH----HHHhhCCC---CHHHHHHHHHHHHHhhCCChhhH
Q 017651          128 REDYPQLQFEAAWALTNIASGTSENTKVVIDH-----GAVPI----FVKLLASP---SDDVREQAVWALGNVAGDSPRCR  195 (368)
Q Consensus       128 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----g~i~~----L~~lL~~~---~~~v~~~a~~~L~nla~~~~~~~  195 (368)
                      +++ ...+..|+.+++.++.+...... -...     ...+.    ++..|.++   ++.++..|+|+++.++..-+  .
T Consensus       416 ~~~-w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~  491 (960)
T 1wa5_C          416 SKN-WKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K  491 (960)
T ss_dssp             --C-HHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H
T ss_pred             chh-HHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H
Confidence            344 68899999999999863211100 0000     12222    23334555   89999999999999986532  1


Q ss_pred             HHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC-------CCChh----hhhchHHHHHHhhcCCC---HH--
Q 017651          196 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-------QPPFD----QVRPALPALAQLVHSND---EE--  259 (368)
Q Consensus       196 ~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~~----~~~~~~~~L~~lL~~~d---~~--  259 (368)
                      +.+.  ..++.++..| .+++..++..|+++|.+++....       .....    ....+++.|..++....   +.  
T Consensus       492 ~~l~--~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          492 AQLI--ELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             HHHH--HHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HHHH--HHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            2222  2577788888 56688899999999999997421       11111    22455666666776541   11  


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc----CC-CCcchHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHH
Q 017651          260 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL----GH-PSPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYL  333 (368)
Q Consensus       260 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL----~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~g~l~~l  333 (368)
                      ....++.++..++....+....... .+++.|...+    ++ .++..+..++.+|+.++.. .++... -+...++|.+
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~  646 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTF  646 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHH
Confidence            2234455555443211111111110 1233333333    33 3456777789999999876 333333 3344677888


Q ss_pred             HHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          334 LGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       334 ~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ..+|... ...+..++.-+++.+..
T Consensus       647 ~~iL~~~-~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          647 LTVFSED-IQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhh-hHhhHHHHHHHHHHHHH
Confidence            8888766 56677777777776653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.91  E-value=0.00013  Score=74.55  Aligned_cols=225  Identities=10%  Similarity=0.052  Sum_probs=127.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCC--CCchHHH-HhcCcHHH----HHHhhcCC--CCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           85 SDDSSLQLEATTQFRKLLSIER--SPPIEEV-IQSGVVPR----FVEFLMRE--DYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~~--~~~~~~~-i~~g~i~~----Lv~lL~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +.++..+..|+.++..++.+..  ....... -...+.+.    ++..|.++  .++-+|..|+|+++.++..-  ..+.
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH
Confidence            5667788888898888864310  1000000 00022222    33445555  14999999999999998842  1222


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhh-HHHHHh--cCChHHHHHHhccc----cchhHHH
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRC-RDLVLS--QGALIPLLAQLNER----AKLSMLR  221 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-------~~~-~~~i~~--~~~i~~l~~~l~~~----~~~~~~~  221 (368)
                       . ..+++.++..|.+++..|+..|+++|.+++...       +.+ ++.+..  ...++.|+.++...    .......
T Consensus       494 -l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          494 -L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             -H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             -H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence             2 246788899898888999999999999998631       111 222211  01344444555332    0111224


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhc
Q 017651          222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL  295 (368)
Q Consensus       222 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-----~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL  295 (368)
                      .+..++..++...+.........+++.|...+.     .+++.+...++.+++.++.. .++.... +...+++.+...|
T Consensus       572 ~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL  650 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVF  650 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHH
Confidence            555666655543222222233445555555543     23677888899999988865 3333222 3335667777777


Q ss_pred             CCCCcchHHHHHHHHHHhh
Q 017651          296 GHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       296 ~~~~~~v~~~a~~~l~nl~  314 (368)
                      .....+....++.+++.+.
T Consensus       651 ~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          651 SEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HTTCTTTHHHHHHHHHHHH
T ss_pred             HhhhHhhHHHHHHHHHHHH
Confidence            6655566777777776664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.00026  Score=61.18  Aligned_cols=191  Identities=13%  Similarity=0.102  Sum_probs=126.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HHHH--hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~~i--~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .+| +-+.|.+.++..|..|+..+.+++........ +..+  -....+.+-..+.+.+ ..++..++.++..++.....
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence            455 66789999999999999999998875322111 1111  1234566777887777 89999999999988753211


Q ss_pred             --c-hH--HHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHH
Q 017651          152 --N-TK--VVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW  225 (368)
Q Consensus       152 --~-~~--~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~  225 (368)
                        . ..  ...-..+++.|+. .|.+....++..+..++..++...... ..     .++.++..+ .+.++.++..++.
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~  161 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN  161 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence              1 11  1112346777776 478888999999988887776432111 11     234455555 6778899888888


Q ss_pred             HHHHhhcCCCC--CC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 017651          226 TLSNFCRGKPQ--PP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG  274 (368)
Q Consensus       226 ~L~~l~~~~~~--~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~  274 (368)
                      .|..+......  .. ...+..+++.+..+|.+.|+.||..|..++..+...
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            88877654211  11 223345677788889999999999999999887654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.83  E-value=0.002  Score=65.70  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC-----CCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL  330 (368)
Q Consensus       256 ~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l  330 (368)
                      .++..++.++|+++.++.+..+....-.=..+++.|+.++.+     +...++..++|++|..+..-....+ .+. .++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L~-~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HHH-HHH
Confidence            578999999999999998765432222222467777777743     2344566788999987653221111 111 456


Q ss_pred             HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       331 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      ..++..+..+ ++.++..|||++.++|.....
T Consensus       543 ~~L~~~l~~~-~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          543 LKLFEFMHET-HEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHHHHHTTCS-CHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence            6677777666 788999999999999975443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.75  E-value=0.0014  Score=67.58  Aligned_cols=135  Identities=13%  Similarity=0.136  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--
Q 017651          222 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--  297 (368)
Q Consensus       222 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~--~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--  297 (368)
                      .+..+|..++...+.   .....+.+.+...+.  ..++..+..++++++.++..-.+....-.-..+++.+..+...  
T Consensus       432 ~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~  508 (1049)
T 3m1i_C          432 SEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR  508 (1049)
T ss_dssp             HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence            445555555532211   122233344444454  3578899999999999986533321111112245555554322  


Q ss_pred             ---CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          298 ---PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       298 ---~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                         +.+.++..+++++|.++..-....+ .+. .+++.++..+.++ ++.++..||+++.+++...+.
T Consensus       509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence               2344555688999987643221111 222 4677788888887 899999999999999974433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.71  E-value=0.00028  Score=72.09  Aligned_cols=219  Identities=12%  Similarity=0.085  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~  210 (368)
                      ...+..|+++++.++.+-.......+. ..++.+..+.. ++++.++..++|+++.++..-....+.+.  .+++.++..
T Consensus       478 w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~  554 (971)
T 2x1g_F          478 WTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRG  554 (971)
T ss_dssp             CHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHH
Confidence            678999999999998864432211111 12332223322 35899999999999998742111001111  134555555


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCC--hHHHHHHHH--
Q 017651          211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGT--NDKIQAVIE--  284 (368)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~--~~~~~~~~~--  284 (368)
                      | .   +.++..|++++.++|+.....-......++..+..++...  +.+.+..+..+++.++..-  ++....+..  
T Consensus       555 l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll  630 (971)
T 2x1g_F          555 L-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV  630 (971)
T ss_dssp             H-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             h-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5 2   6789999999999997532111122245555666677663  5788888999999887642  222222211  


Q ss_pred             cCChHHHHHhcCCC--CcchHHHHHHHHHHhh---cC--C-----------hHHHHHHHHcCChHHHHHhhCCC-CCccH
Q 017651          285 AGVCPRLVELLGHP--SPSVLIPALRTVGNIV---TG--D-----------DFQTQCIITYGALPYLLGLLTHS-HKKSI  345 (368)
Q Consensus       285 ~~~~~~L~~lL~~~--~~~v~~~a~~~l~nl~---~~--~-----------~~~~~~~~~~g~l~~l~~ll~~~-~~~~v  345 (368)
                      .-++..+..++...  ++..+..+..+++.++   .+  .           ......+ ...+++.+..++... .+..+
T Consensus       631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v  709 (971)
T 2x1g_F          631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDV  709 (971)
T ss_dssp             HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHH
Confidence            11222333333333  2323333344444333   21  1           0011112 236788777777542 25689


Q ss_pred             HHHHHHHHHHHhc
Q 017651          346 KKEACWTISNITA  358 (368)
Q Consensus       346 ~~~a~~~l~nl~~  358 (368)
                      .+.+|+++++++.
T Consensus       710 ~e~~~~~~~~~~~  722 (971)
T 2x1g_F          710 LEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999775

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.67  E-value=0.0014  Score=66.77  Aligned_cols=219  Identities=13%  Similarity=0.147  Sum_probs=130.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 017651          127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA  203 (368)
Q Consensus       127 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~  203 (368)
                      .+.+ ...+..++++++.++.+-.+..     ...++.++..+   .++++.++..++|+++.++..-.... ..+. ..
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HH
Confidence            3444 7889999999999998644321     12333444433   33578899999999999985321111 2222 47


Q ss_pred             hHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCh-HHHH
Q 017651          204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN-DKIQ  280 (368)
Q Consensus       204 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~~~~~-~~~~  280 (368)
                      ++.++..| .+  +.++..|+++|.++|...+..-......+++.+..++...  +.+.+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88888887 33  7889999999999997543222223345666666667653  57888999999999886542 3333


Q ss_pred             HHHHcCChHHHHHhc----CCC-CcchHH---HHHHHHHHhhcCCh----------------------HHHHHHHHcCCh
Q 017651          281 AVIEAGVCPRLVELL----GHP-SPSVLI---PALRTVGNIVTGDD----------------------FQTQCIITYGAL  330 (368)
Q Consensus       281 ~~~~~~~~~~L~~lL----~~~-~~~v~~---~a~~~l~nl~~~~~----------------------~~~~~~~~~g~l  330 (368)
                      ..++ .+++.+...+    ..+ +++.+.   ..+.+|+.++..-.                      .....+. ..++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL-QQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH-HHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH-HHHH
Confidence            3322 2344444333    222 333333   45555555542210                      0111122 2455


Q ss_pred             HHHHHhhCCC-CCccHHHHHHHHHHHHhc
Q 017651          331 PYLLGLLTHS-HKKSIKKEACWTISNITA  358 (368)
Q Consensus       331 ~~l~~ll~~~-~~~~v~~~a~~~l~nl~~  358 (368)
                      +.+..++... .++.+.+.+|.+++.++.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            6666665431 256899999999999765

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.65  E-value=0.00076  Score=58.46  Aligned_cols=209  Identities=13%  Similarity=0.109  Sum_probs=149.4

Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~----~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      +...+.+..|+..|..-+-+.+..+..+++++......    ..+.+..  -.+.+..++....++++.-.+...|...+
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            44457888889988888889999999999999865432    3344444  24444555545556666666666666666


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCCCCcchHHHHHH
Q 017651          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALR  308 (368)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a~~  308 (368)
                      +...........+.+-.+.+.++.++-+|..+|..++.-+..........++..   .++.....+|.+++.-.+..++.
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            653322333334555667788888999999999999999877666665566554   35777888899999999999999


Q ss_pred             HHHHhhcCCh--HHH-HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhhc
Q 017651          309 TVGNIVTGDD--FQT-QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQVM  367 (368)
Q Consensus       309 ~l~nl~~~~~--~~~-~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~v  367 (368)
                      .||.+.....  ... .++-+..-+..++.+|.+. +..++-+|-.+.--+++  ..+..|..|
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~I  294 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDI  294 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHH
Confidence            9999986532  222 3333346689999999999 99999999999988887  355555443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.59  E-value=0.00015  Score=66.91  Aligned_cols=218  Identities=17%  Similarity=0.151  Sum_probs=144.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCc-hHHHHhcCcHHHHHHhhc--C-C----C--CHHHHHHHHHHHH
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPP-IEEVIQSGVVPRFVEFLM--R-E----D--YPQLQFEAAWALT  143 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~-~~~~i~~g~i~~Lv~lL~--~-~----~--~~~v~~~a~~~L~  143 (368)
                      +-...|+..|.++.++.|.-|+..||.++....... .....+..+.-.|+.+|.  . +    |  -..||+.|+.+|+
T Consensus       174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            346778889999999999999999999987541100 000111133444443332  1 1    1  1479999999999


Q ss_pred             HHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHH
Q 017651          144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNA  223 (368)
Q Consensus       144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a  223 (368)
                      .+ ..-+..      ..++..++..+..+..+++..++-.|..+ .+  -..+   -.++++.++.-| .+.|.+++..|
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D--LL~~---Ld~Vv~aVL~GL-~D~DDDVRAVA  319 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE--FVED---KDGLCRKLVSLL-SSPDEDIKLLS  319 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG--GCCC---HHHHHHHHHHHT-TCSSHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH--HHHH---HHHHHHHHHhhc-CCcccHHHHHH
Confidence            99 644443      23445555555778899999999999888 11  1111   123567777777 77789999999


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC-C-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcc
Q 017651          224 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-D-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS  301 (368)
Q Consensus       224 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~-d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  301 (368)
                      +.+|..++  .+    ..+..++..+...|.+- | .......+..|+.|+..+..   .-.....+|.|.++|.|+-+.
T Consensus       320 AetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITS  390 (800)
T 3oc3_A          320 AELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPE  390 (800)
T ss_dssp             HHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHH
T ss_pred             HHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHH
Confidence            99999888  12    23445666777766543 3 33345556667777655431   111237899999999999999


Q ss_pred             hHHHHHHHHHHhh
Q 017651          302 VLIPALRTVGNIV  314 (368)
Q Consensus       302 v~~~a~~~l~nl~  314 (368)
                      ||..++.++..+.
T Consensus       391 VR~AVL~TL~tfL  403 (800)
T 3oc3_A          391 VRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998887

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.0036  Score=53.91  Aligned_cols=188  Identities=12%  Similarity=0.113  Sum_probs=124.1

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch--HHHh-hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---h
Q 017651          122 FVEFLMREDYPQLQFEAAWALTNIASGTSENT--KVVI-DH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR---C  194 (368)
Q Consensus       122 Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~-~~-g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~---~  194 (368)
                      |-+-|.+.+ ...|.+|+..|..+....+...  .... .. ...+.+...+.+.+..++..++.++..++.....   .
T Consensus        14 l~e~l~sk~-WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKL-WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSS-HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCc-HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            456677777 8999999999988776433221  1111 12 3456677788999999999999999988743210   1


Q ss_pred             HH--HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          195 RD--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       195 ~~--~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      +.  ...-..+++.|+.....+....++..+..++..++.....     ...+++.+...+.+.++.++..++..|..+.
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            11  1111225666776522566778888888888887754311     1235677888889999999999999998876


Q ss_pred             cC--ChH-HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          273 DG--TND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       273 ~~--~~~-~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      ..  ... .....+ ..+++.+..+|.+.++.||..|..+++.+-..
T Consensus       168 ~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          168 AAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            32  110 011111 13466788889999999999999999988653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.45  E-value=0.0017  Score=55.03  Aligned_cols=177  Identities=15%  Similarity=0.061  Sum_probs=116.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh---ccccchhHHHHHHHHHHHhh----cCCC
Q 017651          163 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL---NERAKLSMLRNATWTLSNFC----RGKP  235 (368)
Q Consensus       163 ~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l---~~~~~~~~~~~a~~~L~~l~----~~~~  235 (368)
                      +.+...|.+.+..-+..++..|.......+.   .+..  .++.+++-+   ..+.+..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555556666666666666665543332   2222  233333322   13567777777777766653    3222


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      .-.......++|.|+.-+.+....++..+-.++..++.. ++.        .+++.++.-+.+.++..|..++..++.+.
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            222222356889999999888888988888877666532 222        24677788888999999999999999997


Q ss_pred             cCChHHHHHHHHcCCh---HHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          315 TGDDFQTQCIITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l---~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ......     ....+   +.+..++.+. +..||..|.-++..+-.
T Consensus       196 ~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          196 TNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            533211     23568   9999999999 99999999999987665

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.44  E-value=0.0031  Score=64.46  Aligned_cols=169  Identities=11%  Similarity=0.114  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 017651          134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL  208 (368)
Q Consensus       134 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~  208 (368)
                      .|..+..+|..++....+   .++. -+++.+-..+.+     .+...++.++++++.++.......     ...++.++
T Consensus       437 ~R~~~~~~l~~~~~~~~~---~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~  507 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLND---YILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLM  507 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTT---HHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhH---HHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHH
Confidence            556667777776653221   1111 112333333332     567889999999999987643211     12344444


Q ss_pred             HHh---cc-ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651          209 AQL---NE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (368)
Q Consensus       209 ~~l---~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  284 (368)
                      .++   .. +.++.++..++|+++.++...... ......+++.|+..|.   +.++..|++++.+++..........+ 
T Consensus       508 ~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-  582 (971)
T 2x1g_F          508 RVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-  582 (971)
T ss_dssp             HHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred             HHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence            433   21 347889999999999999764221 2455678888888882   78999999999999965544333222 


Q ss_pred             cCChHHHHHhcCC--CCcchHHHHHHHHHHhhcC
Q 017651          285 AGVCPRLVELLGH--PSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       285 ~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~  316 (368)
                      ..++..+..++..  .+...+..++.+++.++..
T Consensus       583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            2466677777765  3567889999999999764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.43  E-value=0.021  Score=49.51  Aligned_cols=243  Identities=12%  Similarity=0.122  Sum_probs=166.3

Q ss_pred             HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch----HHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017651          111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT----KVVID-HGAVPIFVKLLASPSDDVREQAVWALG  185 (368)
Q Consensus       111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~  185 (368)
                      +++...+++..|+..|..=+ -+.|..++.++.++.......+    +.+.. ..++..|+.-..  ++++.-.|...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHH
Confidence            35667788999999999888 7999999999999987544322    22322 123333333333  4555666666777


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh----hhchHHHHHHhhcCCCHHHH
Q 017651          186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ----VRPALPALAQLVHSNDEEVL  261 (368)
Q Consensus       186 nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~lL~~~d~~v~  261 (368)
                      ..+.+. .+...++..+.+-.+.+.+ +.++=++...|..++..+...-.......    ...++.....+|.+++--.+
T Consensus       149 ecir~e-~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIRHE-PLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHTSH-HHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHhH-HHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            777665 4566777777778888888 77788888899988887665421111111    13566778889999999999


Q ss_pred             HHHHHHHHHhhcCCh--HH-HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCC---hHHHHHHHHc--CChHHH
Q 017651          262 TDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD---DFQTQCIITY--GALPYL  333 (368)
Q Consensus       262 ~~a~~~l~~l~~~~~--~~-~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~---~~~~~~~~~~--g~l~~l  333 (368)
                      ..++..|+.+.....  .. ...+-+..-+..++.+|++.+..++..|..+.--+++.+   +.....+...  .++..|
T Consensus       227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl  306 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL  306 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHH
Confidence            999999999986532  22 223333456888999999999999999999999888754   2333333332  567777


Q ss_pred             HHhhCCC-CCccHHHHHHHHHHHHhc
Q 017651          334 LGLLTHS-HKKSIKKEACWTISNITA  358 (368)
Q Consensus       334 ~~ll~~~-~~~~v~~~a~~~l~nl~~  358 (368)
                      ..+..+. ++.....+=...+..|..
T Consensus       307 ~~f~~d~~eDeqF~dEK~~lI~~I~~  332 (341)
T 1upk_A          307 SKFQNDRTEDEQFNDEKTYLVKQIRD  332 (341)
T ss_dssp             HHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCcchhhHHHHHHHHHHHHHh
Confidence            7776655 466677776666666554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.42  E-value=0.0011  Score=56.30  Aligned_cols=176  Identities=11%  Similarity=0.081  Sum_probs=116.4

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH----hhCCCCHHHHHHHHHHHHHhh----CCCh
Q 017651          121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK----LLASPSDDVREQAVWALGNVA----GDSP  192 (368)
Q Consensus       121 ~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~nla----~~~~  192 (368)
                      .+...|-+.+ ..-+..++..|......++   ..++.  .++.++.    -+.+.+..+...++.+|..+.    ..+.
T Consensus        50 ~~~~~lfs~d-~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           50 SLMSQLFHKD-FKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHTCSC-HHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3444455555 6677777777776554332   22221  2333333    334778888888888887764    2221


Q ss_pred             hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 017651          193 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS  272 (368)
Q Consensus       193 ~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~  272 (368)
                      ...+.-.. -++|.|+..+ .+..+.++..+-.++..++...|      ...+++.+...+.+.++..+..++..+.++.
T Consensus       124 ~~~~~ea~-~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          124 PMSQEEVS-AFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             CCCHHHHH-HHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHH-HHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            22222111 2688999988 67777888777777766664211      1347788888899999999999999999987


Q ss_pred             cCChHHHHHHHHcCCh---HHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          273 DGTNDKIQAVIEAGVC---PRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~---~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      ....-.     ....+   +.+..++.+++..+|..|+.++..+-.
T Consensus       196 ~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          196 TNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            431111     23468   999999999999999999999987643

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=97.33  E-value=0.0069  Score=49.85  Aligned_cols=144  Identities=17%  Similarity=0.062  Sum_probs=106.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSPRCRD  196 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~-~~~~~~~  196 (368)
                      ++.+-.+..++. .++|..|+..|+.. .. .        ..+++.+.. +-.+++-.|++.++.+++.++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            566667777777 79999999998877 31 1        124566666 5567889999999999999985 44431  


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN  276 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~  276 (368)
                            .++.+.... .+++..+++.++..+.-.|.. +. .......++|.|..+..+++..|+....|.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~~-~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-PY-FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-TT-TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-ch-hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  456666666 889999999998877654543 21 122224578888888888899999999999999999988


Q ss_pred             HHHHHHHH
Q 017651          277 DKIQAVIE  284 (368)
Q Consensus       277 ~~~~~~~~  284 (368)
                      +.+..+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88666554

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.26  E-value=0.001  Score=67.82  Aligned_cols=141  Identities=14%  Similarity=0.224  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCChh--hHHHHHhcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 017651          172 PSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAQLNE----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA  245 (368)
Q Consensus       172 ~~~~v~~~a~~~L~nla~~~~~--~~~~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  245 (368)
                      .+...++.++|++|.|++.-..  ....+..  +++.|+.++..    ++...++..++|+++.+++.-. ........+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~-~~~~~L~~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVT--VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK-AHWNFLRTV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH-HCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            5789999999999999975432  2222222  67778887732    2233455578899998887641 122345677


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH----------cCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          246 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE----------AGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       246 ~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~----------~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      +..|+..+..+++.++..||+++.++|....   ..+..          ..++..+...+..-++.-+..+..+++.++.
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~---~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7778888877789999999999999996422   22221          1233344444444566777899999999987


Q ss_pred             CCh
Q 017651          316 GDD  318 (368)
Q Consensus       316 ~~~  318 (368)
                      ..+
T Consensus       619 ~~~  621 (1023)
T 4hat_C          619 EER  621 (1023)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.25  E-value=0.0089  Score=61.59  Aligned_cols=150  Identities=13%  Similarity=0.189  Sum_probs=93.0

Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHHhcc----ccchhHHHHHHHHHHHhhcCCC
Q 017651          163 PIFVKLLA--SPSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNE----RAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       163 ~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~-~~~i~~~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      +.+-..+.  +.+...++.++++++.+++..... ...+.. ..++.++.+...    ++.+-++..++|+++.++....
T Consensus       454 ~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~  532 (1049)
T 3m1i_C          454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK  532 (1049)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence            44444554  357889999999999998653221 111111 133344443211    1334444468999998886531


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH----------HcCChHHHHHhcCCCCcchHHH
Q 017651          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------EAGVCPRLVELLGHPSPSVLIP  305 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~----------~~~~~~~L~~lL~~~~~~v~~~  305 (368)
                      . .......+++.++..+.++++.|+..||+++.+++.....   .+.          -..++..+..++...+..-...
T Consensus       533 ~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~---~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~  608 (1049)
T 3m1i_C          533 A-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT  608 (1049)
T ss_dssp             H-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence            1 2245567888888888888899999999999999964222   221          1134444555555555555677


Q ss_pred             HHHHHHHhhcCC
Q 017651          306 ALRTVGNIVTGD  317 (368)
Q Consensus       306 a~~~l~nl~~~~  317 (368)
                      .+.+++.++...
T Consensus       609 ~~eai~~ii~~~  620 (1049)
T 3m1i_C          609 FYKACGIIISEE  620 (1049)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC
Confidence            788888886543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.18  E-value=0.0017  Score=66.16  Aligned_cols=266  Identities=10%  Similarity=0.007  Sum_probs=143.5

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc--chHHHhhCCC
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVIDHGA  161 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~  161 (368)
                      .+.++.....++.++...++   -.+...++..++++.+..+|..   ++++..|+.||..+.+....  .+..++..=.
T Consensus       203 ~~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~  276 (980)
T 3ibv_A          203 NAKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILN  276 (980)
T ss_dssp             HTTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence            34778888999999999985   3466778888899999999975   78999999999999875432  2222222101


Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCh-----hhHHHH--HhcCChHHHHHHhccccchhHHHHHHHH
Q 017651          162 VPIFVKLLA--SPSDDVREQAVWALGNVA------GDSP-----RCRDLV--LSQGALIPLLAQLNERAKLSMLRNATWT  226 (368)
Q Consensus       162 i~~L~~lL~--~~~~~v~~~a~~~L~nla------~~~~-----~~~~~i--~~~~~i~~l~~~l~~~~~~~~~~~a~~~  226 (368)
                      +...+.-+.  .++.++.+..+..+..++      ...+     +.+...  .-.+.++.++..+ .+++.++...++..
T Consensus       277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~F  355 (980)
T 3ibv_A          277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPF  355 (980)
T ss_dssp             HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence            111122122  356666654444443332      1111     111100  1123677888888 55666776666666


Q ss_pred             HHHhhcCC---CC--CChhhh----hchHHHHHHhhcCC-----------C-----HHHHHHHHHHHHHhhcCChHHH-H
Q 017651          227 LSNFCRGK---PQ--PPFDQV----RPALPALAQLVHSN-----------D-----EEVLTDACWALSYLSDGTNDKI-Q  280 (368)
Q Consensus       227 L~~l~~~~---~~--~~~~~~----~~~~~~L~~lL~~~-----------d-----~~v~~~a~~~l~~l~~~~~~~~-~  280 (368)
                      +..+....   +.  ......    ..+++.++.-+..+           +     .+.|......+..++.-.++.. .
T Consensus       356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            66555321   11  111222    33444444433321           1     1345555533323332222222 2


Q ss_pred             HHHHcCChHHHHHhcC---CCCcchHHHHHHHHHHhhcCChHHHHHHH-Hc----CChHHHHHhhC-----CCCCccHHH
Q 017651          281 AVIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCII-TY----GALPYLLGLLT-----HSHKKSIKK  347 (368)
Q Consensus       281 ~~~~~~~~~~L~~lL~---~~~~~v~~~a~~~l~nl~~~~~~~~~~~~-~~----g~l~~l~~ll~-----~~~~~~v~~  347 (368)
                      .+.+ -+.+.+...+.   +.++..++.++.+++.++.+.......+. +.    .+++.+..++.     .+ ++.++.
T Consensus       436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence            1111 11222333342   34588899999999999876542211110 00    23455555554     44 789999


Q ss_pred             HHHHHHHHHhc
Q 017651          348 EACWTISNITA  358 (368)
Q Consensus       348 ~a~~~l~nl~~  358 (368)
                      .++|+++..+.
T Consensus       514 ~~~~~l~rys~  524 (980)
T 3ibv_A          514 LYMEILVRYAS  524 (980)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.18  E-value=0.00019  Score=60.45  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          289 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       289 ~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      +.|..++.++++.+|..+...++                  .+.+..+ .++ ++.||..|...|
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence            45666677777777777766543                  2444445 666 888888876543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.14  E-value=0.003  Score=64.45  Aligned_cols=157  Identities=8%  Similarity=0.074  Sum_probs=100.8

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 017651          170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP  247 (368)
Q Consensus       170 ~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  247 (368)
                      .+.+...++.++++++.++......     ....++.++..+.  ..+++.++..++|+++.++..-.. .......+++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence            5567889999999999999764321     1123455555442  224678999999999999875311 1245678889


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHHHHhhcCCh-HHHHHH
Q 017651          248 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDD-FQTQCI  324 (368)
Q Consensus       248 ~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~-~~~~~~  324 (368)
                      .++..|++  +.|+..|++++.+++..........+ ..++..+..++..  -+...+..++.+++.++...+ +.....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            99888854  89999999999999964322111111 1344555555554  246788999999999986543 333333


Q ss_pred             HHcCChHHHHHh
Q 017651          325 ITYGALPYLLGL  336 (368)
Q Consensus       325 ~~~g~l~~l~~l  336 (368)
                      ++ .+++.+...
T Consensus       610 ~~-~l~~~l~~~  620 (963)
T 2x19_B          610 LH-SLISPYIQQ  620 (963)
T ss_dssp             HH-HHHHHHHHH
T ss_pred             HH-HHHHHHHHH
Confidence            33 344444433

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.06  E-value=0.014  Score=59.50  Aligned_cols=224  Identities=13%  Similarity=0.052  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHH-hhCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVV-IDHG----AVPIFVKLLA-----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQ  201 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~-~~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~  201 (368)
                      ....+.++.+|+.++.+-......+ -...    .++.+..++.     .+++.++..++|+++..+..-..      ..
T Consensus       457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~  530 (980)
T 3ibv_A          457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES  530 (980)
T ss_dssp             HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence            6778889999999988644322211 0112    3455555554     57799999999999998754221      22


Q ss_pred             CChHHHHHHhcc-----ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-----CC--------------
Q 017651          202 GALIPLLAQLNE-----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-----ND--------------  257 (368)
Q Consensus       202 ~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-----~d--------------  257 (368)
                      ..+++++..+..     +++..++..++.++.++|+.....-......++..+..+|..     .+              
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~  610 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN  610 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence            357777776644     456789999999999999875432222334455555555542     11              


Q ss_pred             --HHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHH----HHhcCCCC-c-c---hHHHHHHHHHHhhcCChHH---
Q 017651          258 --EEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRL----VELLGHPS-P-S---VLIPALRTVGNIVTGDDFQ---  320 (368)
Q Consensus       258 --~~v~~~a~~~l~~l~~~---~~~~~~~~~~~~~~~~L----~~lL~~~~-~-~---v~~~a~~~l~nl~~~~~~~---  320 (368)
                        .+-+.+...+++.++..   +.+.....++ .+++.+    -..+.... . .   -....+.++|+++.+-+..   
T Consensus       611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~  689 (980)
T 3ibv_A          611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE  689 (980)
T ss_dssp             TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred             CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence              11345566666666522   3333332322 233333    33332221 1 1   2235677788888654211   


Q ss_pred             ---HHHHHHcCChHHHHHhhC--CCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651          321 ---TQCIITYGALPYLLGLLT--HSHKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       321 ---~~~~~~~g~l~~l~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                         ...++. .+.+.+...+.  .. +..++..++.++..+...-..++
T Consensus       690 ~~p~~~~f~-~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~  736 (980)
T 3ibv_A          690 EVAWLASFN-KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDM  736 (980)
T ss_dssp             CCSHHHHHH-HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             CCcHHHHHH-HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhH
Confidence               122222 35556656665  33 67899999999999987555444

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.75  E-value=0.16  Score=51.98  Aligned_cols=102  Identities=16%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHHhhcCChHH-H-HHHHHcCChHHHHHhcCCC-----CcchHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017651          257 DEEVLTDACWALSYLSDGTNDK-I-QAVIEAGVCPRLVELLGHP-----SPSVLIPALRTVGNIVTGDDFQTQCIITYGA  329 (368)
Q Consensus       257 d~~v~~~a~~~l~~l~~~~~~~-~-~~~~~~~~~~~L~~lL~~~-----~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~  329 (368)
                      ++.....+||+++.++..-.+. - ..+.  .+++.|+.+..++     ...++...++++|..+.--..+.+ +++ .+
T Consensus       492 sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L~-~v  567 (1073)
T 3gjx_A          492 SWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FLK-TV  567 (1073)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHH-HH
T ss_pred             CHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HHH-HH
Confidence            5889999999999998443321 1 2222  3566666666443     234556667888886543221111 222 45


Q ss_pred             hHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHH
Q 017651          330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       330 l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      +..++..+.++ ++.++..||-++..|+..+..+
T Consensus       568 l~~L~~~m~~~-~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          568 VNKLFEFMHET-HDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHTTCC-STTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888877 8999999999999999865554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.65  E-value=0.0059  Score=56.53  Aligned_cols=214  Identities=13%  Similarity=0.089  Sum_probs=137.2

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhC----C------C---CHHHHHHHHHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----S------P---SDDVREQAVWAL  184 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~------~---~~~v~~~a~~~L  184 (368)
                      +...|+.-|-++. .++|.-|+-+|..+..............+. +..++++.    +      +   -..|||.|+.+|
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL  252 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL  252 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence            4566666667777 899999999999987532110000011111 22332221    1      1   258999999999


Q ss_pred             HHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHH
Q 017651          185 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDA  264 (368)
Q Consensus       185 ~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a  264 (368)
                      |.+ ..-+.-      ..++..++..+ ..+..+++..++-.|-.+..--.     ...++++.++..|.+.|.+|+..|
T Consensus       253 GaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          253 SRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             HHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHH
Confidence            999 554432      23444444433 55678888888888888821111     156788999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhcCC--CCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCC
Q 017651          265 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK  342 (368)
Q Consensus       265 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~  342 (368)
                      +.+|.-++ . ++....+     +..+-..|.+  +=.......+..|+.+++.+...   -.+...+|.|..++.|+ -
T Consensus       320 AetLiPIA-~-p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-I  388 (800)
T 3oc3_A          320 AELLCHFP-I-TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-V  388 (800)
T ss_dssp             HHHHTTSC-C-SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-S
T ss_pred             HHHhhhhc-c-hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-c
Confidence            99999999 2 3333333     3333333322  12334566677777777655311   11237899999999999 9


Q ss_pred             ccHHHHHHHHHHHHh
Q 017651          343 KSIKKEACWTISNIT  357 (368)
Q Consensus       343 ~~v~~~a~~~l~nl~  357 (368)
                      ..||+.+..++..+.
T Consensus       389 TSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          389 PEVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887665

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.57  E-value=0.018  Score=47.45  Aligned_cols=140  Identities=11%  Similarity=0.041  Sum_probs=99.4

Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChHHHHHH
Q 017651          205 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSD-GTNDKIQAV  282 (368)
Q Consensus       205 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-lL~~~d~~v~~~a~~~l~~l~~-~~~~~~~~~  282 (368)
                      ..+...|.+++..+++..|+.+|..+ .        .....++.+.. +-..++..|+.-++.++..++. ..++.    
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence            34455554777778998999988776 2        11357777777 4456678999999999998884 33322    


Q ss_pred             HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCC
Q 017651          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN  360 (368)
Q Consensus       283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  360 (368)
                          .++.+.....+++..+|..|...+--.+....  ....     -+++.+-.+..++ +..||+..+|.|..++..+
T Consensus       140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhC
Confidence                46778889999999999988877543332211  1111     2466666666777 9999999999999999999


Q ss_pred             HHHhhhc
Q 017651          361 RDQIQVM  367 (368)
Q Consensus       361 ~~~i~~v  367 (368)
                      |+-+..+
T Consensus       210 Pd~V~~~  216 (240)
T 3l9t_A          210 PDLVKIE  216 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9877653

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.41  E-value=0.12  Score=44.86  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=104.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCC----ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG----AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR  193 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g----~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~  193 (368)
                      +..+.+++..+.  +.+.-++.++.-.+. .+.....+.+.+    ++..+...+.+ ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            456666666554  455566666655554 233333332221    22233444443 346678899999999998754 


Q ss_pred             hHHHHHhcCChHHHHHHhc---cccchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHH
Q 017651          194 CRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWAL  268 (368)
Q Consensus       194 ~~~~i~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l  268 (368)
                      .++.+..  ....++..+.   .+.+..++..++..+.|++-.. ..........++..+..++. ..|++....++-+|
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            6666665  2455555543   3457889999999999988653 11222223345555556664 35889999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhcCC
Q 017651          269 SYLSDGTNDKIQAVIEAGVCPRLVELLGH  297 (368)
Q Consensus       269 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  297 (368)
                      ++|...+.+..+..-.-|+-..+-++.+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99998765554433334555555555544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.19  E-value=0.55  Score=42.14  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=101.9

Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----------CCCHHHHHHHHHHHHHHh
Q 017651           78 AMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIA  146 (368)
Q Consensus        78 ~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~v~~~a~~~L~~l~  146 (368)
                      .++..|.++. .......+..|+.-+..++..-++.++ .+++..|+.+|..          ..+...+..++.||..+.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            4455555442 333345667777666544223345666 6678888888852          112578899999999998


Q ss_pred             cCCCcchHHHhh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhcc
Q 017651          147 SGTSENTKVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNE  213 (368)
Q Consensus       147 ~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~-~~~i~----------~~~~i~~l~~~l~~  213 (368)
                      .. ......++. ...+..|...|.++++.++..++..|+.+|.... .. ...++          +..-+.+++..|..
T Consensus       149 N~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          149 NN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             SS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             cc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            73 444455554 5688999999999999999999999999986542 21 23332          23346777888854


Q ss_pred             ccchhHHHHHHHHHHHhhcCCC
Q 017651          214 RAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       214 ~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      ..+.+....++..+-.+....+
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHHHHHHHHHcCCC
Confidence            4566776666666666666543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.15  E-value=0.037  Score=50.33  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 017651          172 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ  251 (368)
Q Consensus       172 ~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~  251 (368)
                      .+...+..|+..+.....+-|...+.     ++..+++++ .+.|..++..|...|..+|.+      ..+..+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            46889999999999999988887665     688899999 888999999999999999976      336678899999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       252 lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      +|+++++.-...+-++|..+...++..        .+..+...+..++..+|+.++..|..
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence            999999877777777777776554322        23333333333456777777777754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.11  E-value=0.11  Score=45.29  Aligned_cols=127  Identities=14%  Similarity=0.111  Sum_probs=95.1

Q ss_pred             HHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHH
Q 017651          184 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLT  262 (368)
Q Consensus       184 L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~  262 (368)
                      |.|+.-++...-+-++..+++..+...+ +.++.++.+..+..|...+..+ ..........+|.++..+. +++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            3444444455668888999999999999 8889999999999999988764 2222334678898888875 67889999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCC------CcchHHHHHHHHHH
Q 017651          263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHP------SPSVLIPALRTVGN  312 (368)
Q Consensus       263 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~------~~~v~~~a~~~l~n  312 (368)
                      ...+.|+|...+.....+..+..|.+..|.... +++      +..-+..||.+++|
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence            999999999998877778888889999888776 322      22334555555554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.92  E-value=0.23  Score=41.27  Aligned_cols=140  Identities=12%  Similarity=0.137  Sum_probs=87.3

Q ss_pred             HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCC
Q 017651           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVID-HGA  161 (368)
Q Consensus        93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~  161 (368)
                      ..+..|+..+..++..-++.+ ..+++..|+.+|..    +      .+...+.+++.||..+.. +....+.++. .++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~   97 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG   97 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence            345555555544322223455 46677778777753    1      125788999999999887 3444555554 567


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~-~~~i~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      +..+...|.++++.++..++..|+.+|..+. .. ...++          +..-+.+++..+....+.+....++..+-.
T Consensus        98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~  177 (233)
T 2f31_A           98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  177 (233)
T ss_dssp             HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            8999999999999999999999988886542 12 23332          222355566666444455665555555555


Q ss_pred             hhcCC
Q 017651          230 FCRGK  234 (368)
Q Consensus       230 l~~~~  234 (368)
                      +....
T Consensus       178 li~~~  182 (233)
T 2f31_A          178 LITPA  182 (233)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            55553

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.72  E-value=0.49  Score=39.33  Aligned_cols=194  Identities=15%  Similarity=0.154  Sum_probs=125.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHH-HH-hcCcHHHHHHhhcC-------CC-CHH---HHHHHHHHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEE-VI-QSGVVPRFVEFLMR-------ED-YPQ---LQFEAAWAL  142 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~-~i-~~g~i~~Lv~lL~~-------~~-~~~---v~~~a~~~L  142 (368)
                      +..++..|..  ++.+..|+..|.+--.  .-+.... +. ..|.+..|++=+-+       +. .+.   -.-.|+..|
T Consensus         5 i~qli~~L~~--p~~Re~AL~eLsk~Re--~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            5 IYQWINELSS--PETRENALLELSKKRE--SVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             HHHHHHHTSS--TTTHHHHHHHHHHHTT--TCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--chhHHHHHHHHHHhhh--ccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            4455555554  4468888888876522  1233333 33 45667766543321       11 011   224445556


Q ss_pred             HHHhcCCCcchHHHhhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhccccc
Q 017651          143 TNIASGTSENTKVVIDHGAVPIFVKLLASP-----SDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAK  216 (368)
Q Consensus       143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~nla~-~~~~~~~~i~~~~~i~~l~~~l~~~~~  216 (368)
                      .-+|+ .++.+..++++.+.-.|..+|...     .+.++-.++.++|.+.. ++++.-..+++.+++|..++.+ ..++
T Consensus        81 QcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~Gs  158 (268)
T 2fv2_A           81 QCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGS  158 (268)
T ss_dssp             HHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSC
T ss_pred             HHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhcc
Confidence            66777 589999999998777777777642     36788899999999884 5677888889999999999999 6666


Q ss_pred             hhHHHHHHHHHHHhhcCCCC--------CChhhhhchHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCC
Q 017651          217 LSMLRNATWTLSNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       217 ~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~~~~L~-~lL~~~d~~v~~~a~~~l~~l~~~~  275 (368)
                      +--+.-|++.+..+..++..        ..+..+..++..++ .+...+++.+...+++|-..|++++
T Consensus       159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            66677788887776655311        11222233343333 3345667888999999988888764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.72  E-value=0.0085  Score=50.27  Aligned_cols=46  Identities=22%  Similarity=0.142  Sum_probs=32.1

Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHH
Q 017651          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS  354 (368)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~  354 (368)
                      .+..++.++++.+|..++..+                  ..+.|..++.++ ++.||..++..++
T Consensus       174 ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~-d~~VR~~aa~~l~  219 (244)
T 1lrv_A          174 SLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDP-DWTVRLAAVEHAS  219 (244)
T ss_dssp             GGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCS-SHHHHHHHHHHSC
T ss_pred             HHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence            344555677777777666532                  235677888888 9999999988754

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.65  E-value=0.66  Score=47.65  Aligned_cols=242  Identities=14%  Similarity=0.108  Sum_probs=137.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCc---HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGV---VPRFVEFLMREDYPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~---i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .+-.|++.+..-+.+........+..- ...+....+.+...|-   +..+.+++.+.. ... .+|+++|...... ..
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~-~~  387 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQ-LTS-AEATQIVASTLSN-QQ  387 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-SCH-HHHHHHHHHHHHT-CC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-CCH-HHHHHHHHHhhcc-CC
Confidence            456667777766654443333332210 0000111223333443   444566666554 222 3355555543321 11


Q ss_pred             chHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhc---cccchhHH
Q 017651          152 NTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLN---ERAKLSML  220 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~---~~~~~~~~  220 (368)
                      -..     ..+..+..++.+    .++.+++.++.+++++..    +.+.+.     ...++++.+.+.   ...+.+-.
T Consensus       388 Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~  457 (1056)
T 1lsh_A          388 ATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEI  457 (1056)
T ss_dssp             CCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHH
Confidence            111     245566677765    467788889999988863    222221     123455555442   33456667


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 017651          221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  293 (368)
Q Consensus       221 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~  293 (368)
                      ..++.+|.|+...          ..++.|.+++..       ....++..|+++|..++...+...        -+.+++
T Consensus       458 ~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~  519 (1056)
T 1lsh_A          458 VLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLP  519 (1056)
T ss_dssp             HHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHH
T ss_pred             HHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHH
Confidence            8889999998853          467778887742       135788999999999997765553        344566


Q ss_pred             hc--CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          294 LL--GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       294 lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +.  ...++++|..|+.+|-.-.  ++ .       ..+..+...+..+.+..|.....-.|.+++.
T Consensus       520 i~~n~~e~~EvRiaA~~~Lm~t~--P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          520 IFLNVAIKSELRIRSCIVFFESK--PS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             HHHCTTSCHHHHHHHHHHHHHTC--CC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCCChHHHHHHHHHHHHHC--cC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence            66  4457889999888774322  22 1       1244455556554466677777677777775

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.55  E-value=0.44  Score=48.76  Aligned_cols=223  Identities=13%  Similarity=0.095  Sum_probs=138.1

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--
Q 017651           72 KLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--  149 (368)
Q Consensus        72 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~--  149 (368)
                      +++.+..++..+.+++.+.+..|-..|..+-.   ++        +....+..+|..+.++.+|.-|+..|.+.....  
T Consensus        26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~---sp--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~   94 (1073)
T 3gjx_A           26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE---HP--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWK   94 (1073)
T ss_dssp             SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC---CS--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGG
T ss_pred             CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc---Cc--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence            34578888988888888888888888876522   22        224445555655555899999999999976521  


Q ss_pred             --CcchHHHhhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHH
Q 017651          150 --SENTKVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLR  221 (368)
Q Consensus       150 --~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~  221 (368)
                        +......+...++..+...-.+     .++.++.+.+.+++.|+... |.     ...++++.++..+.  .++....
T Consensus        95 ~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-----~Wp~fi~dLv~~~~--~~~~~~~  167 (1073)
T 3gjx_A           95 ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-----HWPTFISDIVGASR--TSESLCQ  167 (1073)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHH--HCHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-----hccHHHHHHHHHhC--CCHHHHH
Confidence              2222333444455555554433     24677788888888887432 11     02335666666662  2334455


Q ss_pred             HHHHHHHHhhcCCCCC-----Ch-------hhh----hchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 017651          222 NATWTLSNFCRGKPQP-----PF-------DQV----RPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIE  284 (368)
Q Consensus       222 ~a~~~L~~l~~~~~~~-----~~-------~~~----~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~  284 (368)
                      ..+.+|..|++.-...     ..       ..+    ..+++.+..+|. ..++++...++.++..+..--+  ...+++
T Consensus       168 ~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~  245 (1073)
T 3gjx_A          168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFE  245 (1073)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHS
T ss_pred             HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhcc
Confidence            6677777766541100     00       011    123333444443 4568888889999999887643  346778


Q ss_pred             cCChHHH-HHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          285 AGVCPRL-VELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       285 ~~~~~~L-~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      .++++.+ ..+|.  ++..+..|+.||..++..
T Consensus       246 ~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          246 TKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             SSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence            8889888 47774  568999999999999864

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.27  E-value=0.19  Score=41.68  Aligned_cols=140  Identities=11%  Similarity=0.159  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCC----HHHHHHHHHHHHHHhc-CCCcchHHHhhCCChHHHH
Q 017651           92 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY----PQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFV  166 (368)
Q Consensus        92 ~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~----~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~  166 (368)
                      ..|+..|.-+++  .++....+++..+--.|..+|+..+.    .-+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus        74 cnaLaLlQcvAs--hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           74 CNALALLQCVAS--HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHH--CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHc--CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            344555555555  26667788999988888899876542    4688999999999886 4566777888899999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--------cCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          167 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--------QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       167 ~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~--------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      +.++.++.--+..|.+++..|..++... ..+..        ...+..++..+...++..+.++++.|...|+.+.
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999997665332 22211        1134445555556778889999999999998763

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.03  E-value=0.18  Score=43.60  Aligned_cols=151  Identities=12%  Similarity=0.098  Sum_probs=89.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hc----CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QS----GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS  150 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~----g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~  150 (368)
                      +..+.+.+..+ .+.++-++..+|-.+.   .+...... +.    .++..++..+..+..+..+.-+++++.|+... +
T Consensus       105 l~~l~kil~WP-~~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~  179 (304)
T 3ebb_A          105 LQILWKAINCP-EDIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-Q  179 (304)
T ss_dssp             HHHHHHHHTSC-TTTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-H
T ss_pred             HHHHHHHHcCC-HHhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-c
Confidence            34444444322 2345556666664432   23332222 21    12334445555444477899999999999984 5


Q ss_pred             cchHHHhhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHhcCChHHHHHHhccccchhHHHHHHHH
Q 017651          151 ENTKVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--RDLVLSQGALIPLLAQLNERAKLSMLRNATWT  226 (368)
Q Consensus       151 ~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~--~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~  226 (368)
                      ..+..+...  .+++.+...+.+++..++..++.++.|++......  .+....  .+..+..++....+.+....++-+
T Consensus       180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--CLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHHHHHHhccCCHHHHHHHHHH
Confidence            556555542  24555565666778999999999999998421100  011111  344555556555688999999999


Q ss_pred             HHHhhcC
Q 017651          227 LSNFCRG  233 (368)
Q Consensus       227 L~~l~~~  233 (368)
                      |.+|...
T Consensus       258 LGtL~~~  264 (304)
T 3ebb_A          258 LGTLISD  264 (304)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            9999965

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.72  E-value=1.5  Score=39.35  Aligned_cols=141  Identities=12%  Similarity=0.126  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhcCCCcchHHHhh-CCC
Q 017651           93 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIASGTSENTKVVID-HGA  161 (368)
Q Consensus        93 ~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~  161 (368)
                      ..+..|+..+..++..-++.+. .+++..|+.+|..    .      .+...+..++.||..+... ......++. .++
T Consensus        24 ~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~  101 (386)
T 2bnx_A           24 SCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEG  101 (386)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSH
T ss_pred             HHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHH
Confidence            3455555555543222234554 5667777777752    1      1257889999999999873 444444444 568


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhccccchhHHHHHHHHHHH
Q 017651          162 VPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSN  229 (368)
Q Consensus       162 i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~-~~~i~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  229 (368)
                      +..+...|.++++.++..++..|+.+|..+. .. ...++          +..-+.+++..+..+.+.+....++..+-.
T Consensus       102 i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~  181 (386)
T 2bnx_A          102 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  181 (386)
T ss_dssp             HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            8999999999999999999999988886442 22 23222          233466788888556677777776666666


Q ss_pred             hhcCCC
Q 017651          230 FCRGKP  235 (368)
Q Consensus       230 l~~~~~  235 (368)
                      +....+
T Consensus       182 lv~~~~  187 (386)
T 2bnx_A          182 LITPAE  187 (386)
T ss_dssp             HHTTCS
T ss_pred             HHCCCC
Confidence            776644

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.51  E-value=1.7  Score=35.93  Aligned_cols=143  Identities=11%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             CcchHHHhhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017651          150 SENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS  218 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~  218 (368)
                      ..+.+.+ ..+++..|+.+|..           .+......++.||..+..........+...+.+..+...| .+++..
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC-CTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh-CCCCch
Confidence            3445555 34667667766642           1356677899999998876655544444455677777777 777889


Q ss_pred             HHHHHHHHHHHhhcCCCCCC-hhhhh------------chHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHH------
Q 017651          219 MLRNATWTLSNFCRGKPQPP-FDQVR------------PALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK------  278 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~-~~~~~------------~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~------  278 (368)
                      ++..++..|..+|....... ...+-            .-+..++..+. ..+.+....++..+..+....++.      
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l  191 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  191 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence            99999999999998753222 22211            12334556665 345778888887777777665432      


Q ss_pred             HHHHHHcCChHHHHHh
Q 017651          279 IQAVIEAGVCPRLVEL  294 (368)
Q Consensus       279 ~~~~~~~~~~~~L~~l  294 (368)
                      ...+...|+.+.+-.+
T Consensus       192 R~ef~~~Gl~~il~~l  207 (233)
T 2f31_A          192 RSELMRLGLHQVLQEL  207 (233)
T ss_dssp             HHHHHHTTHHHHHHHH
T ss_pred             HHHHHHCChHHHHHHH
Confidence            1233444555544433

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.29  E-value=0.22  Score=43.33  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=86.9

Q ss_pred             HHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHH
Q 017651          141 ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML  220 (368)
Q Consensus       141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~  220 (368)
                      -|.++.-+.+...+-++..+++..+...++-++.++....+..|...+....-+..-+  ...+|-++..+..+++.++.
T Consensus       265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence            4455556678888999999999999999999999999999999988875433221111  12578888888888999999


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhc
Q 017651          221 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH  254 (368)
Q Consensus       221 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~  254 (368)
                      ....+.|+|...++ |.+....-.+.++.|...+.
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            99999999999887 55555555788887777663

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.29  E-value=2  Score=38.53  Aligned_cols=143  Identities=12%  Similarity=0.138  Sum_probs=92.3

Q ss_pred             CcchHHHhhCCChHHHHHhhC-----------CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017651          150 SENTKVVIDHGAVPIFVKLLA-----------SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS  218 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~-----------~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~  218 (368)
                      ......++ .+++..|+.+|.           ..+..+...++.||..|..........+.....+..+...+ .+..+.
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  177 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  177 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC-CTTSHH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh-CCCchH
Confidence            34455555 456777777764           12457788899999999866554444444455677777777 778889


Q ss_pred             HHHHHHHHHHHhhcCCCCCC-hhhhh------------chHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChHH------
Q 017651          219 MLRNATWTLSNFCRGKPQPP-FDQVR------------PALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDK------  278 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~-~~~~~------------~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~~~~~~~------  278 (368)
                      ++..++..|..+|....... ...+-            .-+..++..|.. .+.+....++..|..+....++.      
T Consensus       178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l  257 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  257 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            99999999999998753121 22211            124556777765 56788888888888887765422      


Q ss_pred             HHHHHHcCChHHHHHh
Q 017651          279 IQAVIEAGVCPRLVEL  294 (368)
Q Consensus       279 ~~~~~~~~~~~~L~~l  294 (368)
                      ...+...|+.+.+-.+
T Consensus       258 R~ef~~~Gl~~il~~l  273 (383)
T 3eg5_B          258 RSELMRLGLHQVLQEL  273 (383)
T ss_dssp             HHHHHHTTHHHHHHHH
T ss_pred             HHHHHHCChHHHHHHH
Confidence            2234455666655553

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.75  E-value=3.8  Score=42.72  Aligned_cols=261  Identities=12%  Similarity=0.070  Sum_probs=145.1

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC---
Q 017651           75 SLPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASG---  148 (368)
Q Consensus        75 ~i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~l~~~---  148 (368)
                      .+..++....++  +.+.+..|-..|..+-..   +        .....+...|. .+.++.+|.-|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            355555555554  667788888888776321   1        12333333332 333389999999999987642   


Q ss_pred             -CCcchHHHhhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHH
Q 017651          149 -TSENTKVVIDHGAVPIFVKLLA---SPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNA  223 (368)
Q Consensus       149 -~~~~~~~~~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a  223 (368)
                       -+......+...++..+...-.   +....++...+.++..|+... |.     ...++++.++.++..  +......+
T Consensus        81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~--~~~~~e~~  153 (1204)
T 3a6p_A           81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ--GETQTELV  153 (1204)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT--CHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC--CHHHHHHH
Confidence             1222233333344555444321   145889999999999998542 21     123467777777733  44556677


Q ss_pred             HHHHHHhhcCC---CCCChhh-------h----hchHHHHHHhhcC-------------------CCHHHHHHHHHHHHH
Q 017651          224 TWTLSNFCRGK---PQPPFDQ-------V----RPALPALAQLVHS-------------------NDEEVLTDACWALSY  270 (368)
Q Consensus       224 ~~~L~~l~~~~---~~~~~~~-------~----~~~~~~L~~lL~~-------------------~d~~v~~~a~~~l~~  270 (368)
                      +.+|..|+...   .......       +    ..+++.+..++..                   .+..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            78888877531   1111100       1    1333444444432                   124566777778776


Q ss_pred             hhcCChHHHHHHHHcC--ChHHHHHhcCCCCcchHHHHHHHHHHhhcCC--hHHHHHHHHc---CChHHHHHhhC-----
Q 017651          271 LSDGTNDKIQAVIEAG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGD--DFQTQCIITY---GALPYLLGLLT-----  338 (368)
Q Consensus       271 l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~---g~l~~l~~ll~-----  338 (368)
                      ....-+-  ..+.+..  +++.+..++.  ++.++..|+.+|..++...  +.....++..   ..+..++..+.     
T Consensus       234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            6654322  2333332  6777776665  4789999999999999754  2222222221   11234444432     


Q ss_pred             --CCCCccHHHHHHHHHHHHh
Q 017651          339 --HSHKKSIKKEACWTISNIT  357 (368)
Q Consensus       339 --~~~~~~v~~~a~~~l~nl~  357 (368)
                        +.++.++.+..|..+..++
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg  330 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALG  330 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHH
Confidence              1114567777777777766

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.07  E-value=5.2  Score=36.58  Aligned_cols=255  Identities=16%  Similarity=0.095  Sum_probs=153.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.+..++...+. ++.....|+..+.++...- +...+.     .+..++.|..+.+ ..||..|++.|..+|.+  +..
T Consensus        29 ~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~F-P~l~~~-----Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~--~~i   98 (507)
T 3u0r_A           29 DAYQVILDGVKG-GTKEKRLAAQFIPKFFKHF-PELADS-----AINAQLDLCEDED-VSIRRQAIKELPQFATG--ENL   98 (507)
T ss_dssp             HHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGC-GGGHHH-----HHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT--TCH
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhhHHHhhh--hhh
Confidence            456667766655 5888889999999998754 333332     4788999999998 89999999999999986  443


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .     .+.+.|+++|..+++.-....-++|..+...++..        .+..+...+ ...++.++..++..|..=...
T Consensus        99 ~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i-~~~~e~~Rer~lkFi~~kl~~  164 (507)
T 3u0r_A           99 P-----RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQI-LQGEDIVRERAIKFLSTKLKT  164 (507)
T ss_dssp             H-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHH-HHSCHHHHHHHHHHHHHHGGG
T ss_pred             h-----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHH-cccchHHHHHHHHHHHHHHhh
Confidence            3     35688999999988877777888888877655532        456666666 335678888888777653332


Q ss_pred             C-CC-CChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHh------cCCCCcchHH
Q 017651          234 K-PQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVEL------LGHPSPSVLI  304 (368)
Q Consensus       234 ~-~~-~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~l------L~~~~~~v~~  304 (368)
                      - +. .......-++..+.+.|++-..+=..-.+.+|..+-.... ...+.+     ++.+...      +...+++...
T Consensus       165 l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vd  239 (507)
T 3u0r_A          165 LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVD  239 (507)
T ss_dssp             SCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHH
T ss_pred             cchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHH
Confidence            2 21 2222223455566677755444333444455555543322 211222     3333332      1223444444


Q ss_pred             HHHHHHHHhh----c--CChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          305 PALRTVGNIV----T--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       305 ~a~~~l~nl~----~--~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ..+.|+..-.    .  .+.....++.+ +++|.+-.+-.....+..|-....+++-++.
T Consensus       240 RlI~C~~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~  298 (507)
T 3u0r_A          240 RLLQCTRQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSS  298 (507)
T ss_dssp             HHHHHHHHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHcc
Confidence            4444444322    1  22234444444 5777555444433234478888888888886

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=92.64  E-value=2.5  Score=44.07  Aligned_cols=202  Identities=14%  Similarity=0.080  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHhcCCh
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGD-----SPRCRDLVLSQGAL  204 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nla~~-----~~~~~~~i~~~~~i  204 (368)
                      +..|.+|-..|..+-.. +         .+...+...|  .+.+..++..|+.+|-|....     +++.+..+.+    
T Consensus        27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~----   92 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN----   92 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH----
Confidence            67888888888776552 2         1333344433  356789999999999988632     2333333322    


Q ss_pred             HHHHHHhccc------cchhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC---
Q 017651          205 IPLLAQLNER------AKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---  274 (368)
Q Consensus       205 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~---  274 (368)
                       .++..+...      .+..++..++.++..++... |..    -..+++.|+.++.+ ++.....++.+|..++..   
T Consensus        93 -~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           93 -SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             -HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence             334443222      45778888899999888764 322    24678888888866 455567788888887642   


Q ss_pred             ----ChHHHH----HHHHc--CChHHHHHhcCC-------------------CCcchHHHHHHHHHHhhcCChHHHHHHH
Q 017651          275 ----TNDKIQ----AVIEA--GVCPRLVELLGH-------------------PSPSVLIPALRTVGNIVTGDDFQTQCII  325 (368)
Q Consensus       275 ----~~~~~~----~~~~~--~~~~~L~~lL~~-------------------~~~~v~~~a~~~l~nl~~~~~~~~~~~~  325 (368)
                          ......    .+.+.  .++..+..+|..                   .+..++..++.++.+...--+  ...++
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence                111111    11111  223333333321                   123466778888877765443  22344


Q ss_pred             HcC--ChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          326 TYG--ALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       326 ~~g--~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +..  +++.+..++.   ++.++..|+-+|..++.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s  276 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVS  276 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHT
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHh
Confidence            433  6777777665   45789999999999997

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.56  E-value=2.1  Score=43.95  Aligned_cols=129  Identities=18%  Similarity=0.109  Sum_probs=88.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDS  191 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla~~~  191 (368)
                      ...|.+.+...+ .+-+..++.+|+|+...           ..++.|..++..       ....++..|+|+|.+++...
T Consensus       442 ~~~l~~~~~~~~-~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~  509 (1056)
T 1lsh_A          442 HDLLSQSSDRAK-EEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD  509 (1056)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred             HHHHHHHHhcCC-hHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence            444555666666 78889999999998872           356777777642       24578889999999999765


Q ss_pred             hhhHHHHHhcCChHHHHHHhc-cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHH
Q 017651          192 PRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALS  269 (368)
Q Consensus       192 ~~~~~~i~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~  269 (368)
                      |..        +-+.+++++. ...+.+++..|+..|..-.   |  .    ...+..+...+.. .+.+|.......|.
T Consensus       510 p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P--~----~~~l~~ia~~l~~E~~~QV~sfv~S~l~  572 (1056)
T 1lsh_A          510 PRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFESK---P--S----VALVSMVAVRLRREPNLQVASFVYSQMR  572 (1056)
T ss_dssp             HHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---C--C----HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             hHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---c--C----HHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence            532        2345666663 3457888888888775422   1  1    1355566666655 57889999999999


Q ss_pred             HhhcCCh
Q 017651          270 YLSDGTN  276 (368)
Q Consensus       270 ~l~~~~~  276 (368)
                      +++....
T Consensus       573 sla~s~~  579 (1056)
T 1lsh_A          573 SLSRSSN  579 (1056)
T ss_dssp             HHTTCCS
T ss_pred             HHHhcCC
Confidence            9987654

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=91.27  E-value=0.14  Score=28.83  Aligned_cols=38  Identities=32%  Similarity=0.519  Sum_probs=26.7

Q ss_pred             HHHhhccc-CCCchHHHhhhHHHHHHHHHHhhhHHHHhhhh
Q 017651           11 VRRNRYKV-AVDADEGRRRREDNMVEIRKNKREESLLKKRR   50 (368)
Q Consensus        11 ~r~~~~k~-~~~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~   50 (368)
                      +|...||+ +...++..++| + ..+..|++|-+.++.-|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence            47889999 45544444444 4 578889999888877663

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.06  E-value=8.2  Score=34.49  Aligned_cols=149  Identities=11%  Similarity=0.118  Sum_probs=92.2

Q ss_pred             cchHHHhhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhH
Q 017651          151 ENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM  219 (368)
Q Consensus       151 ~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~  219 (368)
                      .+...+. .+|+..|+.+|..           .+......++.||..|..........+...+++..+...| .+.++.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL-~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHh-CCCCchH
Confidence            4444554 4566666666531           1356778899999999877655544455556677777777 7778889


Q ss_pred             HHHHHHHHHHhhcCCCCCC-hhhhh------------chHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHH------H
Q 017651          220 LRNATWTLSNFCRGKPQPP-FDQVR------------PALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDK------I  279 (368)
Q Consensus       220 ~~~a~~~L~~l~~~~~~~~-~~~~~------------~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~------~  279 (368)
                      +..++..|..+|....... ...+-            .-+..++..+. +.+.+....++..|..+....++.      .
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR  196 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  196 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            9999999999998753222 22111            12334555665 456788888888888888765532      2


Q ss_pred             HHHHHcCChHHHHHhcCCCCcc
Q 017651          280 QAVIEAGVCPRLVELLGHPSPS  301 (368)
Q Consensus       280 ~~~~~~~~~~~L~~lL~~~~~~  301 (368)
                      ..+...|+.+.+-.+-...++.
T Consensus       197 ~Ef~~~GL~~il~~Lr~~~~~~  218 (386)
T 2bnx_A          197 SELMRLGLHQVLQELREIENED  218 (386)
T ss_dssp             HHHHHTTHHHHHHHHTTCCCHH
T ss_pred             HHHHHCChHHHHHHHhccCChh
Confidence            2345556665554443334443

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=91.04  E-value=7.1  Score=35.50  Aligned_cols=232  Identities=13%  Similarity=0.036  Sum_probs=121.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +..|+.++.|.|+..+...-..|+.+...-  .....++...+-..+.+++.......-..+.+.+++.|..|..---+.
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            667888888888888777777777775432  223333333344556666644332334567788888887764311111


Q ss_pred             HhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          156 VIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      -...-....|+-|.+.... .--.+-.+++..+...+|.....     ++..|++.= ...+..=....+.-+..+....
T Consensus       242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~eleeile~~  315 (449)
T 2npp_B          242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNELEEILDVI  315 (449)
T ss_dssp             HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHHHHHHHhC
Confidence            1110112333344443322 22334556666655555544222     122222221 2223332233445555666543


Q ss_pred             CCCChh-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCC-----CCcchHHH
Q 017651          235 PQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-----PSPSVLIP  305 (368)
Q Consensus       235 ~~~~~~-~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~~  305 (368)
                      +...+. ....++..+...+.+++-.|.+.|+....|     + .+-.++..   .+++.+...|..     =+..++..
T Consensus       316 ~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~l  389 (449)
T 2npp_B          316 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL  389 (449)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence            333332 224566777788888888888887654321     2 11222221   245666665522     25678999


Q ss_pred             HHHHHHHhhcCChHHH
Q 017651          306 ALRTVGNIVTGDDFQT  321 (368)
Q Consensus       306 a~~~l~nl~~~~~~~~  321 (368)
                      |..++.-+..-++...
T Consensus       390 a~~vlk~l~e~d~~lf  405 (449)
T 2npp_B          390 IYNALKLFMEMNQKLF  405 (449)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCHHHH
Confidence            9999988877666443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=90.87  E-value=8.4  Score=34.30  Aligned_cols=89  Identities=10%  Similarity=0.160  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHh
Q 017651           89 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (368)
Q Consensus        89 ~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  168 (368)
                      ..+...+..++.++-.. ++.    .-.++++.++.+-..++ .++|...+..|...+....+.   +.  .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el---~~--~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIEL---LL--KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGG---HH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHH
Confidence            46888888888875532 232    23567999999988887 899999999999888743333   22  357888889


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q 017651          169 LASPSDDVREQAVWALGNVA  188 (368)
Q Consensus       169 L~~~~~~v~~~a~~~L~nla  188 (368)
                      |.++++.+...++.+.+++-
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999888874

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=90.53  E-value=6.9  Score=32.73  Aligned_cols=141  Identities=10%  Similarity=0.069  Sum_probs=90.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +-.+++.-+....+.+...+...+.++-.. ++.    .-..+++.++.+-.+++ .++|...+..+...+...++..  
T Consensus        17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~-dp~----ll~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~--   88 (257)
T 3gs3_A           17 VVDWCNELVIASPSTKCELLAKVQETVLGS-CAE----LAEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELL--   88 (257)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTT-TGG----GHHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGH--
T ss_pred             HHHHHHHhhhcCcHHHHHHHHHHHHHHHcc-CHh----HHHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHH--
Confidence            445555444433368889999999976653 222    12345788888776666 8999999999999886433322  


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC---------------ChHHHHHHhccccchhHH
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG---------------ALIPLLAQLNERAKLSML  220 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~---------------~i~~l~~~l~~~~~~~~~  220 (368)
                         ...++.|..++.++++.+...++.+.+++-.-   .-+.+...+               .=..++.++ .+.+..++
T Consensus        89 ---~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~---~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~-~s~n~gvk  161 (257)
T 3gs3_A           89 ---PHVINVVSMLLRDNSAQVIKRVIQACGSIYKN---GLQYLCSLMEPGDSAEQAWNILSLIKAQILDMI-DNENDGIR  161 (257)
T ss_dssp             ---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGG-GSSCHHHH
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH-ccCCcchH
Confidence               23578888999999999999999888877311   111111111               112333443 55677777


Q ss_pred             HHHHHHHHHhh
Q 017651          221 RNATWTLSNFC  231 (368)
Q Consensus       221 ~~a~~~L~~l~  231 (368)
                      ..+...+..+.
T Consensus       162 l~~iKF~e~vI  172 (257)
T 3gs3_A          162 TNAIKFLEGVV  172 (257)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777644

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=90.23  E-value=5.3  Score=35.72  Aligned_cols=228  Identities=14%  Similarity=0.070  Sum_probs=111.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      +..|+.++.|.|+..|...-..|..+...  -.....++...+-..|.+++-......-..+.+.+++.|..|-.---+.
T Consensus       131 i~~Ll~lfdSeDprER~~LktiLhrIY~k--f~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke  208 (403)
T 3fga_B          131 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  208 (403)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence            56677777888887777766667666543  1222333433344555665543321233446677777776653211110


Q ss_pred             HhhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          156 VIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      -...-....|+-+-+.... .--.+-..++......+|.....+     +..+++.= ...+..=....+.-+..+...-
T Consensus       209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~Ele~iLe~~  282 (403)
T 3fga_B          209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEEILDVI  282 (403)
T ss_dssp             HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCcHHHHHHHHHHHHHHHhC
Confidence            0000012233333333322 223455666666665555442221     22222221 2223332333445555566543


Q ss_pred             CCCChhh-hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhc----CC-CCcchHHH
Q 017651          235 PQPPFDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----GH-PSPSVLIP  305 (368)
Q Consensus       235 ~~~~~~~-~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL----~~-~~~~v~~~  305 (368)
                      +...+.. ...++..+...+.+++-.|.+.|+....      .+.+-.++..   .+++.+...|    .. =+..++..
T Consensus       283 ~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn------Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l  356 (403)
T 3fga_B          283 EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL  356 (403)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc------cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            3223222 2456667777788888888887765431      1222222221   2445544444    22 25778888


Q ss_pred             HHHHHHHhhcCC
Q 017651          306 ALRTVGNIVTGD  317 (368)
Q Consensus       306 a~~~l~nl~~~~  317 (368)
                      +..++.-+..-+
T Consensus       357 ~~~vlk~l~e~d  368 (403)
T 3fga_B          357 IYNALKLFMEMN  368 (403)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhC
Confidence            888777775543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=87.18  E-value=1.3  Score=34.36  Aligned_cols=74  Identities=12%  Similarity=0.048  Sum_probs=56.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..+.+.|++.++.+++.|+..|..++..........+....++..|+.++....++.|+..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            46777888888999999999999888887654233334555677888888888764448999999888877765

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=86.89  E-value=2.9  Score=34.16  Aligned_cols=132  Identities=8%  Similarity=-0.048  Sum_probs=78.2

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 017651          213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  291 (368)
Q Consensus       213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L  291 (368)
                      .++.-+.+..++..+........       ...++.+-.++. .++..+....|.+++.++...++.        +.+.+
T Consensus        65 ~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i  129 (220)
T 2b6c_A           65 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF  129 (220)
T ss_dssp             TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence            44555666666666665432111       123333444443 345666666666676665433332        24567


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      .....+++.-++..|+...  +..........+     ++.+-.++.++ +..|++..+|+|..++..+++.+...
T Consensus       130 ~~W~~s~~~w~rR~ai~~~--l~~~~~~~~~~~-----~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~f  197 (220)
T 2b6c_A          130 ALFYGAENFWNRRVALNLQ--LMLKEKTNQDLL-----KKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEEL  197 (220)
T ss_dssp             HHHTTCSSHHHHHHHHHTT--TTCGGGCCHHHH-----HHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHH--HHHHHCCCHHHH-----HHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            7888888887777776544  222111122222     44444567777 89999999999999999998876543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.10  E-value=1.1  Score=33.64  Aligned_cols=72  Identities=14%  Similarity=0.136  Sum_probs=53.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch-HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..+.+.|++.++..++.|+..+..++... .... ..+....++..|+.+++..+ +.|+..++..+...+.
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc-G~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNC-GKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence            45777788888888888888888887776544 3333 34546667788888887666 8999988888877664

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=85.95  E-value=8.7  Score=32.81  Aligned_cols=131  Identities=10%  Similarity=0.077  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhcCCCcchHHHhh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHh
Q 017651          136 FEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQL  211 (368)
Q Consensus       136 ~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~--~~i~~l~~~l  211 (368)
                      ..|+--|..++.+ -+..-.++.  ...+..|+ +.....+.+++.|..+|+.-.+++|...+.+.+.  .++..+..-|
T Consensus        46 e~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L  123 (315)
T 3qml_C           46 EDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAAL  123 (315)
T ss_dssp             HHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHH
Confidence            4444455555553 333333332  12223333 2233567899999999999999999887777663  2333443333


Q ss_pred             cc---c---cchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 017651          212 NE---R---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLS  272 (368)
Q Consensus       212 ~~---~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~--d~~v~~~a~~~l~~l~  272 (368)
                      ..   .   ....++...+++|..|....  ..+  ....+..|.+++...  ++.++..++..+..+-
T Consensus       124 ~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~F--~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          124 SNLNDSNHRSSNILIKRYLSILNELPVTS--EDL--PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHCC--CCCHHHHHHHHHHHHHSCCCS--TTC----CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhHHHHHHHHHHHHHHhcCh--Hhh--hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            11   1   23466777888888888774  112  234556666666656  8889998888887665

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=85.87  E-value=15  Score=33.50  Aligned_cols=193  Identities=13%  Similarity=0.065  Sum_probs=94.0

Q ss_pred             chHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          152 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      .....++...+-.|+.++.++|+.=|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++.+++.+.
T Consensus       154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            34555666678889999999999999988888888865544444444332 23344555533333333456677777777


Q ss_pred             cCCCCCC-hhhhhchHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHH
Q 017651          232 RGKPQPP-FDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT  309 (368)
Q Consensus       232 ~~~~~~~-~~~~~~~~~~L~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  309 (368)
                      .+...+- .....-+..+|+.+.....- ..-.....|+..++..++.....+     +..|+++=-..++.-...-+.-
T Consensus       233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence            7753222 12222234455555554432 222333344444444333332221     2222222211222212223333


Q ss_pred             HHHhhcC-ChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHH
Q 017651          310 VGNIVTG-DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT  352 (368)
Q Consensus       310 l~nl~~~-~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~  352 (368)
                      |..+... ++...+.+.. .+...+..++.++ +..|.+.|...
T Consensus       308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~-hfqVAErAL~~  349 (449)
T 2npp_B          308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYY  349 (449)
T ss_dssp             HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCS-CHHHHHHHHGG
T ss_pred             HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHH
Confidence            3333322 2222222222 3455566666665 55666655543

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=85.06  E-value=16  Score=32.60  Aligned_cols=79  Identities=16%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      ..++...+-.|+.++.++|+.=|+..-.+|..|-+.-...|..+... +-..+.+.+.....-.-....+.+++.+..+.
T Consensus       124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgsIinGf  202 (403)
T 3fga_B          124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGF  202 (403)
T ss_dssp             TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred             hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence            34444567778999999999999999998888876655555444331 22344444422222222335556666666554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.56  E-value=8.1  Score=34.39  Aligned_cols=154  Identities=15%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             CChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 017651          202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA  281 (368)
Q Consensus       202 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~  281 (368)
                      .+++.++.+- .+.+.++++.++..|...|..    .......+++.|..+|.+.|+.|...++.+.+++-.   ...+.
T Consensus        63 ~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYp---l~f~~  134 (386)
T 3o2t_A           63 NFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYK---VALQW  134 (386)
T ss_dssp             GGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHH
Confidence            3778888776 677899999999999998864    233446788889999998899888887776665531   11111


Q ss_pred             HHHc---------------CChHHHHHhcCCCCcchHHHHHHHHHHhhc--C--C-h-H---------------------
Q 017651          282 VIEA---------------GVCPRLVELLGHPSPSVLIPALRTVGNIVT--G--D-D-F---------------------  319 (368)
Q Consensus       282 ~~~~---------------~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~--~--~-~-~---------------------  319 (368)
                      ++..               .+-..++..+.+.+..++..|+..+..++-  .  . + .                     
T Consensus       135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L  214 (386)
T 3o2t_A          135 MVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYI  214 (386)
T ss_dssp             HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSS
T ss_pred             HhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcC
Confidence            1111               233456666778889999999998888651  1  0 0 0                     


Q ss_pred             HHHHHHH--cCChHHHHHhhCCCC-CccHHHHHHHHHHHHhcCCHHH
Q 017651          320 QTQCIIT--YGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQ  363 (368)
Q Consensus       320 ~~~~~~~--~g~l~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~  363 (368)
                      ....+..  .+++..|+.++.++. ++..--.+..+|++|+..-|..
T Consensus       215 ~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~  261 (386)
T 3o2t_A          215 QYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF  261 (386)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH
Confidence            0011111  267888888887642 3334455667777777654443

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=84.14  E-value=0.67  Score=47.04  Aligned_cols=190  Identities=13%  Similarity=0.091  Sum_probs=102.6

Q ss_pred             ChHHHHHhhCCCCH-HHHHH-HHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---c-ccchhHHHHHHHHHHHhhcCC
Q 017651          161 AVPIFVKLLASPSD-DVREQ-AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E-RAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       161 ~i~~L~~lL~~~~~-~v~~~-a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~---~-~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .+|.|+.+.+..+. ++... |..++..++.... ...      .++.++..+.   . +++- .+..++..+..+....
T Consensus       761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~-~~~------~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n  832 (997)
T 1vsy_5          761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI-RKN------HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE  832 (997)
T ss_dssp             TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC-CHH------HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC-CHH------HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence            67777777776655 67776 5666777764421 111      1333444432   2 3444 5555544443332211


Q ss_pred             -CCCChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCC-h-HHHHHHHH---cCC-----hHHHHHhcCCCCcch
Q 017651          235 -PQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGT-N-DKIQAVIE---AGV-----CPRLVELLGHPSPSV  302 (368)
Q Consensus       235 -~~~~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~-~-~~~~~~~~---~~~-----~~~L~~lL~~~~~~v  302 (368)
                       ..........+...++.+|.++. .+|+..|+.+|+.+.... . .....++.   ..+     ...+-+-. +.+...
T Consensus       833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~-~~~~~~  911 (997)
T 1vsy_5          833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKL-SKTDIK  911 (997)
T ss_dssp             TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHH-HHHCHH
T ss_pred             HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhccccccccccc-chHHHH
Confidence             11111222467788899999999 999999999999996554 3 22222222   111     11110000 011245


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhC-CC-CCccHHHHHHHHHHHHhcCCHH
Q 017651          303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HS-HKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       303 ~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~-~~-~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      +..|+..|+.++...|...-   -...+|.++..|. +. +...+++.+--+|+++=...++
T Consensus       912 rH~aVLgL~AlV~a~Py~vP---~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrTH~D  970 (997)
T 1vsy_5          912 IHGNVLGLGAIISAFPYVFP---LPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVRAD  970 (997)
T ss_dssp             HHHHHHHHHHHHTTCSCCSS---CCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHhhCCCCCC---CCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhccch
Confidence            67888889998877663320   0123433333332 11 1334999999999998764433

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.82  E-value=2.3  Score=32.28  Aligned_cols=74  Identities=11%  Similarity=-0.050  Sum_probs=57.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..+.+.|++.++..++.|+..|..++..........+....++..|+.++..     ..++.|+..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4677888889999999999999999888765433333556677889999999874     1237999999988888775

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=83.67  E-value=11  Score=32.26  Aligned_cols=148  Identities=9%  Similarity=0.031  Sum_probs=95.1

Q ss_pred             cHHHHHHhhcCC------CHHHHHHHHHHHHHhhcCCCCCchHHHHhc--CcHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q 017651           75 SLPAMVAGVWSD------DSSLQLEATTQFRKLLSIERSPPIEEVIQS--GVVPRFVEFLMREDYPQLQFEAAWALTNIA  146 (368)
Q Consensus        75 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~--g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~  146 (368)
                      .+..+..+++++      +.+....|+..|..+.. + -..-..++..  .++..|+ +..... +.++..|+++++...
T Consensus        23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-D-i~~G~KI~~~ef~lL~nL~-~~~~~~-~~~rE~aarII~ssL   98 (315)
T 3qml_C           23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-D-YKHGYKIITHEFALLANLS-LNENLP-LTLRELSTRVITSCL   98 (315)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-S-HHHHHHHHHHHHHHHHHHH-HCTTSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-h-HHhhhHHHhCcHHHHHHHH-hhccCC-hhHHHHHHHHHHHHH
Confidence            456666677766      44456667777776632 1 2333345542  2333333 223333 789999999999999


Q ss_pred             cCCCcchHHHhhC--CChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc--
Q 017651          147 SGTSENTKVVIDH--GAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--  215 (368)
Q Consensus       147 ~~~~~~~~~~~~~--g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~--  215 (368)
                      ..||.....+.+.  ..+..++.-|..       ....++..-+.+|..|..++..+.     ..++..|.+++ ...  
T Consensus        99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly-~~~~~  172 (315)
T 3qml_C           99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVY-ERNNK  172 (315)
T ss_dssp             TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHH-HHTTT
T ss_pred             ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHH-ccCCC
Confidence            9899888877763  344444433322       345677788888888888764331     34678888888 345  


Q ss_pred             chhHHHHHHHHHHHhhc
Q 017651          216 KLSMLRNATWTLSNFCR  232 (368)
Q Consensus       216 ~~~~~~~a~~~L~~l~~  232 (368)
                      +..++..++..+..+..
T Consensus       173 d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          173 DKQLQIKVLELISKILK  189 (315)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcc
Confidence            88889988888887764

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=83.29  E-value=2.6  Score=32.05  Aligned_cols=73  Identities=8%  Similarity=-0.012  Sum_probs=56.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~------~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..+.+.+++.++..++.|+..|..++..........+....++..|+.++..      .+ +.|+..++..+...+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence            4677888888999999999999988888765433333556677788999999964      34 7899999988888775

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=82.83  E-value=15  Score=32.67  Aligned_cols=191  Identities=13%  Similarity=0.049  Sum_probs=102.3

Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      ..++...+..|+.++.++|+.=|+..-.+|..|-+.-...|..+... +-..+.+.+.......-...++..++.+..+.
T Consensus       169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsIIngf  247 (392)
T 2jak_A          169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGF  247 (392)
T ss_dssp             TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTC
T ss_pred             hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcc
Confidence            34445567889999999999999998888888866544455444332 33455666633333344456777777777776


Q ss_pred             CCCC-hhhhhchHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          235 PQPP-FDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       235 ~~~~-~~~~~~~~~~L~~lL~~~d~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      ..+- .....-+...|+.+.....- ..-.....|+...+..++.....+     +..++++=-..+..-...-+.-|..
T Consensus       248 a~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~elee  322 (392)
T 2jak_A          248 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEE  322 (392)
T ss_dssp             CSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHH
Confidence            3222 22222234556666554432 223334455554454444333222     2333333211222222333444444


Q ss_pred             hhcCC-hHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          313 IVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       313 l~~~~-~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      +.... +...+.+.. .+...+..++.++ +..|.+.|....
T Consensus       323 iLe~~~~~~f~~i~~-~lF~~la~ci~S~-hfqVAErAL~~w  362 (392)
T 2jak_A          323 ILDVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW  362 (392)
T ss_dssp             HHHTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHhCCHHHHHHHHH-HHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence            44332 333333332 5677777888887 777777776543

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=80.25  E-value=6.5  Score=32.29  Aligned_cols=138  Identities=9%  Similarity=0.055  Sum_probs=76.7

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-CCCHHHHHHHH-HHHHHhhcCChHHHHHHHH
Q 017651          207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDAC-WALSYLSDGTNDKIQAVIE  284 (368)
Q Consensus       207 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~-~~d~~v~~~a~-~~l~~l~~~~~~~~~~~~~  284 (368)
                      ++..|-.++..+.+..++..+........       ...++.+-.++. .++..+....| .+++.+....++       
T Consensus        65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-------  130 (232)
T 3jxy_A           65 IIRELWDLPEREFQAAALDIMQKYKKHIN-------ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-------  130 (232)
T ss_dssp             HHHHHHTSSBHHHHHHHHHHHHHTGGGCC-------GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------
Confidence            44444355555666666666653321111       123334444443 34555544432 344444433222       


Q ss_pred             cCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHh
Q 017651          285 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI  364 (368)
Q Consensus       285 ~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i  364 (368)
                       ...+.+...+.+++.-++..|+..+  +.........     ..++.+..++.++ +..|++...|+|..+...+++.+
T Consensus       131 -~~~~~l~~W~~s~~~w~rR~ai~~~--l~~~~~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v  201 (232)
T 3jxy_A          131 -LISAYIPKWIASDNIWLQRAAILFQ--LKYKQKMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVV  201 (232)
T ss_dssp             -GGGGTHHHHHHSSCHHHHHHHHHTT--TTCGGGCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             -HHHHHHHHHhcCCchHHHHHHHHHH--HHHHhCCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHH
Confidence             1456677888888877777776543  2221111111     1234455666777 89999999999999999888877


Q ss_pred             hhc
Q 017651          365 QVM  367 (368)
Q Consensus       365 ~~v  367 (368)
                      ...
T Consensus       202 ~~f  204 (232)
T 3jxy_A          202 WEY  204 (232)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.18  E-value=1.9  Score=35.37  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=55.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..|.+.|++.++.+++.|+..|..++.........++....++..|+.++....++.|+..++..+...+.
T Consensus        45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  118 (226)
T 3zyq_A           45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH  118 (226)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            46788888899999999999998888776644223334455667777888888664448899999888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-87
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-53
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-33
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-11
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	7e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	7e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	9e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  270 bits (691), Expect = 2e-87
 Identities = 199/368 (54%), Positives = 248/368 (67%), Gaps = 11/368 (2%)

Query: 10  EVRRNRYKVA--VDADEGRRRREDNMVEIRKNKREESLLKKRR-----EGLQSQQFPPPA 62
           E RR  +K      ADE RRRR+   VE+RK KR+E+L K+R      +G  S +    +
Sbjct: 4   EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63

Query: 63  PASNLNLQTKL-ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
            +++    ++L + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR
Sbjct: 64  VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPR 123

Query: 122 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAV 181
            VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LL + S +V+EQA+
Sbjct: 124 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183

Query: 182 WALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFD 240
           WALGNVAGDS   RD VL   A+ P+L  L    K S++R ATWTLSN CRGK PQP + 
Sbjct: 184 WALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 242

Query: 241 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 300
            V  ALP LA+L++S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S 
Sbjct: 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 302

Query: 301 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 360
            V  PALR VGNIVTG+D QTQ +I  G LP L  LL+   K++IKKEACWTISNITAGN
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGN 361

Query: 361 RDQIQVMI 368
            +QIQ +I
Sbjct: 362 TEQIQAVI 369

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 18/192 (9%)

Query: 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186
           +  +   +Q  A  A+ NI +G    T+VVI+ G +P    LL+SP ++++++A W + N
Sbjct: 297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 356

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--- 243
           +   +      V+    LIP L +L E A+    + A W +SN   G  Q P D +R   
Sbjct: 357 ITAGNTEQIQAVIDAN-LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLV 414

Query: 244 --PALPALAQLVHSNDEEVLTDACWALSYL-----------SDGTNDKIQAVIEAGVCPR 290
               +  L  L+   D  ++     AL  +               N+    + +AG   +
Sbjct: 415 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 474

Query: 291 LVELLGHPSPSV 302
           +     + +  +
Sbjct: 475 IFNCQQNENDKI 486

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  179 bits (454), Expect = 4e-53
 Identities = 163/306 (53%), Positives = 210/306 (68%), Gaps = 6/306 (1%)

Query: 68  NLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM 127
           N  T   S+  +V G+ S++   QL+AT   RKLLS E+ PPI+ +I++G++P+FV FL 
Sbjct: 7   NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 128 REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187
           + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LLASP   + EQAVWALGN+
Sbjct: 67  KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

Query: 188 AGDSPRCRDLVLSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGKPQ-PPFDQV 242
           AGD    RDLV+  GA+ PLLA L            LRN TWTLSN CR K   PP D V
Sbjct: 127 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV 186

Query: 243 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 302
              LP L +L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG     +
Sbjct: 187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 246

Query: 303 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 362
           + PALR +GNIVTG D QTQ +I  GAL     LLT+  K +I+KEA WT+SNITAG +D
Sbjct: 247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQD 305

Query: 363 QIQVMI 368
           QIQ ++
Sbjct: 306 QIQQVV 311

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGN 186
           +      +   A  A+ NI +GT E T+ VID GA+ +F  LL +P  +++++A W + N
Sbjct: 239 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 298

Query: 187 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR--P 244
           +          V++ G +  L+  +  +A     + A W ++N+  G        +    
Sbjct: 299 ITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357

Query: 245 ALPALAQLVHSNDEEVLTDACWALSYL-----SDGTNDKIQAVI-EAGVCPRLVELLGHP 298
            +  L  L+ + D +++     A+S +       G  +K+  +I E G   ++  L  H 
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 417

Query: 299 SPSV 302
           + SV
Sbjct: 418 NESV 421

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 10/166 (6%)

Query: 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS 171
           +VI +G +  F   L       +Q EA W ++NI +G  +  + V++HG VP  V +L+ 
Sbjct: 267 KVIDAGALAVFPSLLTNPKT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 325

Query: 172 PSDDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 230
                +++A WA+ N   G +      ++  G + PL+  L+ +    +++     +SN 
Sbjct: 326 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNI 384

Query: 231 CR-GKPQPPFDQVRP------ALPALAQLVHSNDEEVLTDACWALS 269
            +  +     +++         L  +  L    +E V   +   + 
Sbjct: 385 FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (320), Expect = 1e-33
 Identities = 38/279 (13%), Positives = 77/279 (27%), Gaps = 31/279 (11%)

Query: 119 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 179 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 238
            A  AL N+   S   +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 239 FDQVRPALPALAQLV---------------HSNDEEVLTDACWALSYLSDGTNDKIQAVI 283
                       +++                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 284 EAGVCPRLVELLGHPSPSVLIP--------------ALRTVGNIVTGDDFQTQCIITYGA 329
            +G+   L+  + +   +                  + R    + T              
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 330 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
                G  ++   K +              N      + 
Sbjct: 243 EKSSTGCFSNKSDK-MMNNNYDCPLPEEETNPKGSGWLY 280

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 4e-14
 Identities = 35/225 (15%), Positives = 72/225 (32%), Gaps = 14/225 (6%)

Query: 144 NIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 203
            + +   +      +           ++ SD +              +P+    +    A
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 204 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR------PALPALAQLVHSND 257
           +   L  + +  K + L      L N    K        +        LP +A+L+ S +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344

Query: 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVG 311
            +V+      LS +S   +  +  V+   V P +  LL         S  +L  A  TV 
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 356
           N++       +   +   L  ++ L   S      + A   +S++
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 7e-12
 Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 15/181 (8%)

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEEV 260
           G  IP   Q              + + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 320
              A  AL  L   +                V LL     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 321 TQCIITYGALPYLLGLL--------------THSHKKSIKKEACWTISNITAGNRDQIQV 366
            + +I          ++                     +   A   + N+++ +  +  +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 367 M 367
            
Sbjct: 181 R 181

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 7e-10
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL- 169
              ++   +P+     ++     +    A  L+N++         V+ +   P   +LL 
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381

Query: 170 -----ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 224
                 S S+D+   A + + N+    P+      S   L  ++      A       A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 225 WTLSNFCRGK 234
             LS+    K
Sbjct: 442 LLLSDMWSSK 451

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (224), Expect = 1e-21
 Identities = 42/260 (16%), Positives = 90/260 (34%), Gaps = 9/260 (3%)

Query: 104 IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 164 IFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN 222
           + V + L + +  +R +A   +G  + +    ++ VL  GAL  LL  L+  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 223 ATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQA 281
           A + +S   R +               L + +    +++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-----DFQTQCIITYGALPYLLGL 336
           +   G+  +LV L+           L  + ++VT       + +   +     L +   L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 337 LTHSHKKSIKKEACWTISNI 356
           L    +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 2e-20
 Identities = 33/208 (15%), Positives = 71/208 (34%)

Query: 160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 219
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 279
            R    TL N    +           +PAL +++ S  + VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 280 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 339
            AV  AG   ++V LL   +   L      +  +  G+      I+  G    L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 340 SHKKSIKKEACWTISNITAGNRDQIQVM 367
              + +       +  ++  + ++  ++
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIV 224

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 2e-16
 Identities = 57/297 (19%), Positives = 104/297 (35%), Gaps = 8/297 (2%)

Query: 73  LESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDY 131
             ++P +   +  +D  +  +A     +L   E       +++S  +V   V  +   + 
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
            +     A  L N++    E    +   G +P  VK+L SP D V   A+  L N+    
Sbjct: 74  VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 192 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 251
              +  V   G L  ++A LN+     +              +             AL  
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 252 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 311
           ++ +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
           N+    D  T+     G L  L+ LL       +   A   +SN+T  N     ++ 
Sbjct: 253 NL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVC 305

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (171), Expect = 5e-14
 Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 115 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSD 174
               +P  V+ L    +  L       + N+A     N   + + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 175 DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 234
           D + +                               +       ++   T  L    R  
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
                 +    +P   QL++S  E +   A   L  L+    +  +A+   G    L EL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTEL 509

Query: 295 LGHPSPSVLIPALRTVGNI 313
           L   +  V   A   +  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (152), Expect = 1e-11
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 44/172 (25%)

Query: 101 LLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 160
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 161 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML 220
            +P+FV+LL SP ++++  A   L  +A D     + + ++G                  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG------------------ 501

Query: 221 RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 272
                                   A   L +L+HS +E V T A   L  +S
Sbjct: 502 ------------------------ATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 11/93 (11%), Positives = 33/93 (35%)

Query: 275 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 334
            N +  A +     P L +LL      V+  A   V  +   +  +   + +   +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 335 GLLTHSHKKSIKKEACWTISNITAGNRDQIQVM 367
             + +++     +    T+ N++      + + 
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 3e-11
 Identities = 47/284 (16%), Positives = 97/284 (34%), Gaps = 23/284 (8%)

Query: 76  LPAMVAGVWSDDSS--LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ 133
           L A++ G+  ++ S  ++L AT      L   ++   +E  +  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 134 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 193
           ++  A   L  I S   +  +  +      I ++ + S  D+V  Q +    NV  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 194 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV 253
                     L    ++  E+ +     +  +          +     + P L       
Sbjct: 292 ----------LAIEASEAAEQGRPPEHTSKFYA---------KGALQYLVPILTQTLTKQ 332

Query: 254 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
             ND++   + C A            +  I   V P + E + +P       A+   G I
Sbjct: 333 DENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI 392

Query: 314 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 357
           + G +      +   A+P L+ L+       ++  A WT+  I 
Sbjct: 393 LEGPEPSQLKPLVIQAMPTLIELMKDPSVV-VRDTAAWTVGRIC 435

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 121 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQA 180
            F++  ++    + +  A  A   I  G   +    +   A+P  ++L+  PS  VR+ A
Sbjct: 368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 427

Query: 181 VWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211
            W +G +    P   +  ++   L PLL  L
Sbjct: 428 AWTVGRICELLP---EAAINDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 37/302 (12%), Positives = 96/302 (31%), Gaps = 25/302 (8%)

Query: 56   QQFPPPAPASNLNLQTKLESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ 115
              F      +  N    ++ L  +   V+S  ++L  + +           +    +   
Sbjct: 753  LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 812

Query: 116  SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDD 175
            + V     +         ++  A  +L  +      + ++ +      + ++  +SPS++
Sbjct: 813  AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEE 868

Query: 176  VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM-LRNATWTLSNFCRGK 234
            V+  A +ALG+++  +            L  +L ++  + K    L ++   + +     
Sbjct: 869  VKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV 920

Query: 235  PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
               P+  V      L +     +E         L         K+  +    + PRL   
Sbjct: 921  GLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGY 970

Query: 295  LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 354
            L   S       +  V   ++        ++    +   L  L      ++++ A  T +
Sbjct: 971  LISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPD-LNVRRVALVTFN 1028

Query: 355  NI 356
            + 
Sbjct: 1029 SA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 35/240 (14%), Positives = 76/240 (31%), Gaps = 17/240 (7%)

Query: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 191
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 192 PRCRDLVLSQ--GALIPLLAQLNERAK---LSMLRNATWTLSNFCRGKPQPPFDQVRPAL 246
            + ++  +      L   +    E+ +      L+     L     G         +   
Sbjct: 74  SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133

Query: 247 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 306
              + +    D  V  +A   ++ +       +     + +   L+  L  P  +V    
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRT 192

Query: 307 LRTVGNIVT--GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 364
           +  +G++V   G+            + +LL  L+ +   S  +     I+ I+     +I
Sbjct: 193 IIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 15/178 (8%)

Query: 85   SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTN 144
                 L L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 145  IASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 204
            +     E          +P     L S S   R   V A+     D P+  D +L     
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 205  IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLT 262
            I    +  E   L++ R A  T ++    KP    D +   LP L        E +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 9/175 (5%)

Query: 199 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR--GKPQPPFDQVRPALPALAQLVHSN 256
           L+Q  L        E      +  A   LS      G            L  + Q +   
Sbjct: 618 LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK 677

Query: 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV-- 314
             EV   +   L  L+      ++  I     P L   L     SV   A   +G I   
Sbjct: 678 MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQ 736

Query: 315 TGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQVMI 368
            G + Q         L  L+ ++   +  K++ +    TI  +      ++  M+
Sbjct: 737 MGIEMQPYIP---MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML 788

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 46/290 (15%), Positives = 91/290 (31%), Gaps = 19/290 (6%)

Query: 85  SDDSSLQLEATTQFRKLLS---IERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA 141
           S+D   +  +    +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 142 LTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 201
           +T IAS              +P    LL S   +  E A  AL  +  DS    D  +  
Sbjct: 112 ITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 202 G---ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 258
                +IP   Q  + +   +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 318
           EV  + C AL  L +   D++   +   +   +++       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVMI 368
                 +    LP L+ +L +  K S                    +  I
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDI 333

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 35/226 (15%)

Query: 87  DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIA 146
           D    + A      L         + V +S ++    +  M++  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ-CMQDKMPEVRQSSFALLGDLT 693

Query: 147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-----GDSPRCRDLVLSQ 201
               ++ K  I    +PI    L      V   A WA+G ++        P    ++   
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL--- 749

Query: 202 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 261
             L+ ++         ++L N   T+       P     +V P L            + +
Sbjct: 750 HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCP----QEVAPMLQ-----------QFI 792

Query: 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 307
              C +L  + D   +K  A    G+C  ++ +    +PS +I   
Sbjct: 793 RPWCTSLRNIRD-NEEKDSAF--RGIC-TMISV----NPSGVIQDF 830

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 27/209 (12%), Positives = 61/209 (29%), Gaps = 6/209 (2%)

Query: 112 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA--VPIFVKLL 169
            V +  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 170 ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 229
           +     VR    W L   A            +  +  LL ++ +  K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 230 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVC 288
                       +   L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 289 PRLVELLGHP--SPSVLIPALRTVGNIVT 315
           P L++           L P L  + ++ T
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVAT 593

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 126 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 185
            + +    ++  A   L  +     +          +P  + +   P+   R   ++ + 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 245
            ++    +  D+      ++P + ++      ++  N   +L                  
Sbjct: 506 VLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--V 559

Query: 246 LPALAQLVHSNDEEVLTDACWALSYLS 272
            P L +L    D +V   A  AL+ LS
Sbjct: 560 KPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 13/101 (12%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 170
           +E   + ++P+ +      +Y        + +  ++    ++   +     +P  +++  
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---ITTKHMLPTVLRMAG 529

Query: 171 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 211
            P  +VR     +L  +        D    Q  + P+L +L
Sbjct: 530 DPVANVRFNVAKSLQKIG----PILDNSTLQSEVKPILEKL 566

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 120 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 180 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 239
           A   L  +     +      +   +IP +  ++            + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 240 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 299
            +    LP + ++       V  +   +L  +    ++     +++ V P L +L     
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 300 PSVLIPALRTVGNI 313
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 16/172 (9%), Positives = 41/172 (23%), Gaps = 31/172 (18%)

Query: 96  TQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV 155
           ++   L +  +    +E+ +          L+ +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA 215
                AV + ++  +  +   R+   + LG +                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 216 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA 267
              +   A  + +  C+  P          +             V     +A
Sbjct: 100 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFA 147

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 14/213 (6%)

Query: 107 SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166
           SP  +  I++  +       +    P++   AA  +  IA     +         + I V
Sbjct: 89  SPEAKNQIKTNALT-----ALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMV 140

Query: 167 KLLASPSDD-VREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLR-N 222
               +   + V+  ++ ALG +   +      ++S     LI ++           +R  
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200

Query: 223 ATWTLSNF--CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 280
           A   L++             +    +  + +   + D EV   A   L  +       ++
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260

Query: 281 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 313
             +E  +    +  +  P+  V    +     I
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTI 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.89
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.32
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.32
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.31
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.24
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.21
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.21
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.11
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.09
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.03
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.93
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.78
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.73
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.71
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.63
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.59
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.58
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.53
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.9
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.89
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.01
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.96
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.91
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.37
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.81
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	89.32
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	87.45
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	86.38
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	84.0
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	83.59
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.22
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	80.27

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-50  Score=384.71  Aligned_cols=358  Identities=54%  Similarity=0.802  Sum_probs=307.2

Q ss_pred             chHHHHhhccc-CC-CchHHHhhhHHHHHHHHHHhhhHHHHhhhhhccCCCCCCCCCCC------cchhhhhhhccHHHH
Q 017651            8 RAEVRRNRYKV-AV-DADEGRRRREDNMVEIRKNKREESLLKKRREGLQSQQFPPPAPA------SNLNLQTKLESLPAM   79 (368)
Q Consensus         8 ~~~~r~~~~k~-~~-~~~~~r~kr~~~~~~lRk~kr~~~l~~kr~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~l   79 (368)
                      .+++|.+.||+ |+ +++|+|+||+++.+||||+||+++|+|||+.....+........      .........+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            47899999999 64 99999999999999999999999999999764432221111100      000011123569999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhC
Q 017651           80 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH  159 (368)
Q Consensus        80 ~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  159 (368)
                      +..+.+++.+.+..|+..++++++.+.+++++.+++.|++|.|+++|..+.++.++..|+|+|+|++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999888788899999999999999999876658899999999999999888888999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC-CCCC
Q 017651          160 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP  238 (368)
Q Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  238 (368)
                      |+++.++.+|.+++.++++.|+|+|+||+.+++.+++.+...|++++++.++ .+.+..+++.++|+++++|.+. +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6778889999999999999876 5556


Q ss_pred             hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh
Q 017651          239 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD  318 (368)
Q Consensus       239 ~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~  318 (368)
                      .....+++|.++.++.++|++++..++|++++++...++....+++.|+++.++.++.++++.++.+|+.++++++.+++
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          319 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       319 ~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      .....+++.|+++.+..+++++ ++.++++++|+|+|++++++++++.+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i  368 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAV  368 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            9999999999999999999998 99999999999999999999988765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-34  Score=266.40  Aligned_cols=293  Identities=55%  Similarity=0.909  Sum_probs=267.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +.++.+++.+++++++.+..|+..++++++...++.++.+++.|++|.|+++|.+.++++++..|+|+|++++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            57999999999999999999999999999877677788999999999999999876558999999999999999888889


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhcccc----chhHHHHHHHHHHH
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSN  229 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~  229 (368)
                      ..+++.|+++.|+.+|.+++.++++.|+|+|+||+.+++.++..+.+.|+++.++.++....    .....+.++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995433    23567889999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHH
Q 017651          230 FCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR  308 (368)
Q Consensus       230 l~~~~-~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~  308 (368)
                      ++... +........+++|.+..++.+++++++..++|++++++..+++....+...|+++.++.++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99886 34445556789999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhhc
Q 017651          309 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQVM  367 (368)
Q Consensus       309 ~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~v  367 (368)
                      ++++++.+++.....+++.|+++.+..++.++ ++.+++.|+|+|+|++.+++++.+.+
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i  310 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQV  310 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHH
Confidence            99999999998888999999999999999998 89999999999999999888876543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-31  Score=251.19  Aligned_cols=289  Identities=27%  Similarity=0.381  Sum_probs=255.5

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.|+..+++ .++.++..|+++|.++++.. +.....+++.|+++.++.+|.+++ ++++..|+|+|+|++..+++.
T Consensus       119 g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         119 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHH
Confidence            468999999985 56889999999999998754 555667889999999999999988 899999999999999988899


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+.+.|+++.|+.++.+.+..++..++|+|.|++...+.........++++.++.++ .+.+.+++..++|++.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999976544445555667899999999 77889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651          233 GKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (368)
Q Consensus       233 ~~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  311 (368)
                      ..+.. ......++++.++.++.++++.+...++.++++++.+.+.....+++.|+++.+..++.++++.++..++|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            65322 22233688999999999999999999999999999998888889999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC---CHHHhhh
Q 017651          312 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQV  366 (368)
Q Consensus       312 nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~i~~  366 (368)
                      |++.+++.....+++.|+++.++.++.++ ++.++++|+|+|+|++.+   .++++..
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~  412 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRY  412 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHH
Confidence            99999998999999999999999999998 899999999999999962   3455544

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.3e-29  Score=232.55  Aligned_cols=290  Identities=27%  Similarity=0.449  Sum_probs=252.9

Q ss_pred             ccHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.|++.+++ ++++++..|+++|.++++.. +.....+++.|++|.|+.+|.+++ +.++..|+|+|+|++.++++.
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHH
Confidence            579999999975 45789999999999997654 556778899999999999999988 899999999999999988888


Q ss_pred             hHHHhhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL  227 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  227 (368)
                      +..+.+.|+++.++.++...+     ......++|++.+++...+.........++++.+..++ .+++++++..++|++
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l  212 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAI  212 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhh
Confidence            899999999999999998643     35567889999999987655555555666788888888 778899999999999


Q ss_pred             HHhhcCCCCC-ChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHH
Q 017651          228 SNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA  306 (368)
Q Consensus       228 ~~l~~~~~~~-~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a  306 (368)
                      .+++...+.. ......+++|.+++++.+++++++..++++|.+++.++++....+++.|+++.++.+|.++++.++..|
T Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a  292 (434)
T d1q1sc_         213 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  292 (434)
T ss_dssp             HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence            9999875322 222336899999999999999999999999999999888888899999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCHHHhhhc
Q 017651          307 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQVM  367 (368)
Q Consensus       307 ~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~i~~v  367 (368)
                      ++++++++.+.......+.+.|+++.++.++.++ ++.++..|+|+|+|++. ++++++..+
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l  353 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYL  353 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999998888888899999999999999998 89999999999999997 677776543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=217.92  Aligned_cols=282  Identities=17%  Similarity=0.207  Sum_probs=245.7

Q ss_pred             ccHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.++..|. +++++.+..|+.+|.++.. . .+....+++.|++|.|+.+|.+++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            35889999997 4678899999999999853 2 566778999999999999999988 899999999999999988888


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+.+.|+++.|+.+|.+++++++..++++|++++..++..+..+...|++++++.++..+++..++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999998888899999999999999999777788899999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHH
Q 017651          233 GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN  312 (368)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~n  312 (368)
                      ...........++++.|..++.+++.+++..+++++.+++......   ....|+++.|++++.++++.++..|++++++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            6544333444789999999999999999999999999998654322   1224679999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhhCC-CCCccHHHHHHHHHHHHhcCCH
Q 017651          313 IVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNR  361 (368)
Q Consensus       313 l~~~~~~~~~~~~~~g~l~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~  361 (368)
                      ++.+++.....+.+.|+++.++.++.. ++.+.++..|+++|.|++.+.+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            999998888889999999999988843 2267899999999999997543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-27  Score=220.73  Aligned_cols=283  Identities=21%  Similarity=0.218  Sum_probs=242.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.+|.|++.|++++..++..|+..+.++...  ......++ ..|+++.|+.+|.++++++++..|+++|.+++. +++.
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~--~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~   93 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK--EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREG   93 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh
Confidence            5699999999999999999999999999643  34444454 457899999999876658999999999999997 5788


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR  232 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~  232 (368)
                      +..+++.|+++.|+.+|.+++++++..|+++|+|++.+.+..+..+.+.|++++|+.++ ++++.+++..+++++.+++.
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHH-HccChHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999999998888889999999999999999 78889999999999999997


Q ss_pred             CCCC-CChhhhhchHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHH
Q 017651          233 GKPQ-PPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV  310 (368)
Q Consensus       233 ~~~~-~~~~~~~~~~~~L~~lL~~~-d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  310 (368)
                      ..+. .......++++.++.++.+. ++.++..+++++.+++... +....+++.|+++.++.++.++++.++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHhcccchhhhhhhhhHH
Confidence            7532 22333467899999999654 5789999999999998764 4457789999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          311 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       311 ~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      .+++......   ....|+++.|+.++.++ ++.++..|+++|+|++.++++..+
T Consensus       252 ~~ls~~~~~~---~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~  302 (529)
T d1jdha_         252 RNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKM  302 (529)
T ss_dssp             HHHHTTCTTC---SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             Hhccccccch---hhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchhHHHH
Confidence            9998654321   22237899999999998 899999999999999998876644

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-23  Score=191.15  Aligned_cols=281  Identities=20%  Similarity=0.211  Sum_probs=222.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .||.|+++|.+++++++..|+.+|.+++..+ ++....+.+.|+||.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999997653 677888999999999999999988 99999999999999988899999


Q ss_pred             HHhhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH-------------------------------------
Q 017651          155 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD-------------------------------------  196 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nla~~~~~~~~-------------------------------------  196 (368)
                      .+.+.|+++.|+.++.+ .+++++..++++|.+++.+......                                     
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            99999999999998865 6788999999999999764321100                                     


Q ss_pred             -------------------HHHhcCChHHHHHHhc---------------------------------------------
Q 017651          197 -------------------LVLSQGALIPLLAQLN---------------------------------------------  212 (368)
Q Consensus       197 -------------------~i~~~~~i~~l~~~l~---------------------------------------------  212 (368)
                                         .....|+++.++.++.                                             
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence                               0012344555554431                                             


Q ss_pred             -----------------------------------------------------cccchhHHHHHHHHHHHhhcCCCCCC-
Q 017651          213 -----------------------------------------------------ERAKLSMLRNATWTLSNFCRGKPQPP-  238 (368)
Q Consensus       213 -----------------------------------------------------~~~~~~~~~~a~~~L~~l~~~~~~~~-  238 (368)
                                                                           ...++.++..+.+++.+++....... 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                 11223445566777777775542111 


Q ss_pred             -----hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC------CcchHHHHH
Q 017651          239 -----FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP------SPSVLIPAL  307 (368)
Q Consensus       239 -----~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~v~~~a~  307 (368)
                           .....+++|.|+.++.+++++++..+++++++++..+... .. +..++++.++.+|...      +++++..|+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~-~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-RV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-HH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHH-HH-HHHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence                 1112578999999999999999999999999999775433 33 3456789999998532      346899999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      .++.+++..+++..+.+++.|+++.|+.++.+.+++.+++.|+++|+|++..
T Consensus       399 ~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999889999999999999999998764778999999999999753

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.9e-22  Score=170.38  Aligned_cols=223  Identities=17%  Similarity=0.146  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ  210 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~  210 (368)
                      .+.+..|+.+|.+++. +.++...+...|+++.++. ++.+++++++..|+++|++++.+++.++..+...|++++|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 5778888999999999886 7888999999999999999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017651          211 LNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (368)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  289 (368)
                      +..+.++.++..++|++++++++.+... .....++++.|+.++.++++.++..++++|++++.++++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9767789999999999999998864333 334478999999999999999999999999999988888888999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC-----ChHHHHHhhCCCCCccHHHHHHHHHHH
Q 017651          290 RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG-----ALPYLLGLLTHSHKKSIKKEACWTISN  355 (368)
Q Consensus       290 ~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g-----~l~~l~~ll~~~~~~~v~~~a~~~l~n  355 (368)
                      .|+.+|.++++.++..|+++|++|+..++.........+     .+..+...+...++..-..+.+--|.+
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~  260 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  260 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887776665432     234444455544233333344444433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-21  Score=177.25  Aligned_cols=248  Identities=18%  Similarity=0.205  Sum_probs=193.0

Q ss_pred             CcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 017651          117 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD  196 (368)
Q Consensus       117 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~  196 (368)
                      +.||.|+++|++++ ++++..|+++|+|+|.++++.+..+.+.|+||.|+.+|++++++++..|+++|+||+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46999999999999 99999999999999998999999999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhh----------------------------------
Q 017651          197 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV----------------------------------  242 (368)
Q Consensus       197 ~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------------------------  242 (368)
                      .+.+.|+++.++.++....+..++..+++++.+++...........                                  
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            9999999999999997778999999999999999876422111000                                  


Q ss_pred             -----------------------hchHHHHHHhhcC--------------------------------------------
Q 017651          243 -----------------------RPALPALAQLVHS--------------------------------------------  255 (368)
Q Consensus       243 -----------------------~~~~~~L~~lL~~--------------------------------------------  255 (368)
                                             .++++.++.++++                                            
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence                                   1233444333210                                            


Q ss_pred             -------------------------------------------------------CCHHHHHHHHHHHHHhhcCChH---
Q 017651          256 -------------------------------------------------------NDEEVLTDACWALSYLSDGTND---  277 (368)
Q Consensus       256 -------------------------------------------------------~d~~v~~~a~~~l~~l~~~~~~---  277 (368)
                                                                             .++.+...+++++.+++.....   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                   1122333455555555543221   


Q ss_pred             --HHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCC-----CccHHHHHH
Q 017651          278 --KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-----KKSIKKEAC  350 (368)
Q Consensus       278 --~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~-----~~~v~~~a~  350 (368)
                        ....+.+.|+++.|+.+|.++++.++..+++++++++.... ....+ ..++++.++.+|....     +++++..|+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence              11233456899999999999999999999999999987554 44434 4478899999886531     356999999


Q ss_pred             HHHHHHhcCCHHHhhhc
Q 017651          351 WTISNITAGNRDQIQVM  367 (368)
Q Consensus       351 ~~l~nl~~~~~~~i~~v  367 (368)
                      ++|.|++.++++..+.+
T Consensus       399 ~~L~~l~~~~~~~~~~l  415 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQY  415 (457)
T ss_dssp             HHHHHHHTTCTHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHH
Confidence            99999999888766554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.3e-20  Score=160.26  Aligned_cols=197  Identities=16%  Similarity=0.168  Sum_probs=170.4

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChH
Q 017651           85 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE-FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP  163 (368)
Q Consensus        85 ~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~-lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  163 (368)
                      +.+.+.+..|+..|..++..  .+....+...|+++.++. ++++++ ++++..|+++|++++.+++..+..+.+.|++|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~--~d~a~~l~~~gg~~~ll~~ll~s~~-~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN--MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            44567888899999999742  456677889999999886 666776 99999999999999998888999999999999


Q ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCCh-hh
Q 017651          164 IFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQ  241 (368)
Q Consensus       164 ~L~~lL~-~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~  241 (368)
                      .|+.++. +.++.++..++++|++++.+.+..+..+...|+++.|+.++ .+.+..++..++++|.+++...+.... ..
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  183 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLC  183 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            9999996 56789999999999999999998899999999999999999 778999999999999999987543333 33


Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 017651          242 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA  285 (368)
Q Consensus       242 ~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~  285 (368)
                      ..+++|.|+.+|.+++++++..++++|++|+...+.....+...
T Consensus       184 ~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            47899999999999999999999999999998887776655543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.7e-10  Score=97.92  Aligned_cols=231  Identities=15%  Similarity=0.110  Sum_probs=144.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      ..+.|++.|.++++.++..|+..|..+-.            ...++.|+.++.+++ +.++..|+++|+.+..... ...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~-~~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-THH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-ccc
Confidence            46789999999999999999999987731            124799999999988 9999999999998865322 111


Q ss_pred             HHhhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcC
Q 017651          155 VVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG  233 (368)
Q Consensus       155 ~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  233 (368)
                      .     .++.+. .+++++++.++..++.+|++++...+.....     .++.+...+ .+.+..++..++.++..+...
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~~  154 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVINDK  154 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcchH
Confidence            1     133333 3567889999999999999998655432221     345566665 667788888888777654422


Q ss_pred             CCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH----------------------HcCChHHH
Q 017651          234 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------------------EAGVCPRL  291 (368)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~----------------------~~~~~~~L  291 (368)
                                ..++.+..++...+..+...+.+++..+..........+.                      ....++.|
T Consensus       155 ----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L  224 (276)
T d1oyza_         155 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVL  224 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             ----------HHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHH
Confidence                      3455666666666666766666666665544332211110                      01234445


Q ss_pred             HHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          292 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       292 ~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      +..+.+  +.++..++++|+.+.  +         .+.++.|..++.++.+..++..|+-+|
T Consensus       225 ~~~l~d--~~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         225 CDELKK--NTVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             HHHHTS--SSCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HHHhCC--hHHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            554442  335555555555543  1         134555555555543555666655544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-11  Score=114.63  Aligned_cols=267  Identities=13%  Similarity=0.087  Sum_probs=195.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.+...+.+++++++..|+..+..++..-.........-..++|.+...+.+.+ +.++..++.++..++..-.  ..
T Consensus       282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~--~~  358 (588)
T d1b3ua_         282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG--KD  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC--HH
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc--hh
Confidence            36667777888888888888888887765432223333344567888999988887 8999999888887764211  11


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      .. ....+|.+..++.+++++++..++.+++.+...-..  ..+. ...++.+...+ .+.+..++..++.++..++...
T Consensus       359 ~~-~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~~-~~ll~~l~~~~-~d~~~~~r~~~~~~l~~l~~~~  433 (588)
T d1b3ua_         359 NT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLS-QSLLPAIVELA-EDAKWRVRLAIIEYMPLLAGQL  433 (588)
T ss_dssp             HH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHH-HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhhh-hHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHc
Confidence            11 224689999999999999999999988887643211  1111 12566777777 7778899999999999888643


Q ss_pred             CCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          235 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       235 ~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      ..  ......+.+.+..++.++...|+..|+++++.++.....   ......+++.+..++.++++..|..++.+++.+.
T Consensus       434 ~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         434 GV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             CG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             Ch--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            21  112245777888899888999999999999999853211   1122347888999999999999999999999987


Q ss_pred             cCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          315 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       315 ~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ...+.   ..+...++|.+..++.++ .++||..++++|..+..
T Consensus       509 ~~~~~---~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         509 EVCGQ---DITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGG
T ss_pred             HHcCh---HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence            64332   233446899999999998 89999999999999976

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.9e-11  Score=112.29  Aligned_cols=264  Identities=15%  Similarity=0.095  Sum_probs=192.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ++.+...+.+++..++..|+.++.++....   . ...+..-++|.+..+..++. ...|..|+..+..++......   
T Consensus        89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~---~-~~~~~~~l~p~i~~L~~~~~-~~~r~~a~~ll~~~~~~~~~~---  160 (588)
T d1b3ua_          89 LPPLESLATVEETVVRDKAVESLRAISHEH---S-PSDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSA---  160 (588)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTS---C-HHHHHHTHHHHHHHHHTCSS-HHHHHHHGGGHHHHTTTSCHH---
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhC---C-HHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhhHH---
Confidence            566667777888999999999999987532   1 12233445676666666655 788888888888887633221   


Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCC
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP  235 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  235 (368)
                      . ....++.+..++.++++.+|..++.+++.++..-+.   .......++.+..++ .+++..++..++.++..++...+
T Consensus       161 ~-~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~i~~~~~  235 (588)
T d1b3ua_         161 V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHSC
T ss_pred             H-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHHhhccCC
Confidence            1 123578888999999999999999999999865432   122233455566666 78889999999999999886532


Q ss_pred             CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          236 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       236 ~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      .  ......++|.+..++.+.++.|+..++.+++.++..-..   ......+++.+..++.++++.++..|+..++.++.
T Consensus       236 ~--~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         236 Q--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             H--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            2  223345788999999999999999999999999853221   23335678999999999999999999999999875


Q ss_pred             CCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          316 GDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       316 ~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      .-. .......-..+++.+...+.+. ++.+|..++.++..++.
T Consensus       311 ~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~~~  353 (588)
T d1b3ua_         311 NLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP  353 (588)
T ss_dssp             TSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred             HHhhhhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhhhh
Confidence            432 1112223346788888888888 88899999888887764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.4e-10  Score=105.40  Aligned_cols=275  Identities=18%  Similarity=0.213  Sum_probs=178.3

Q ss_pred             cHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWS--DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~--~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      .++.++..+.+  .++..+..++.++..+.... .+....-....+++.++..+.+++ +..++..|++++.++......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            46777877765  34566667778887775432 222111122345788888887643 378999999999998874332


Q ss_pred             ch-HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          152 NT-KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       152 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      .. .........+.+..++.+++++++..++.+|..++...+..-...+. ..+..++.....+.+.+++..++..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            21 11222235677788888999999999999999998655432111111 13344443333677788888888888877


Q ss_pred             hcCC----------------C-CCCh----hhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCCh-HHHHH
Q 017651          231 CRGK----------------P-QPPF----DQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTN-DKIQA  281 (368)
Q Consensus       231 ~~~~----------------~-~~~~----~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~-~~~~~  281 (368)
                      +...                + ....    .....+.|.+...+..       ++..++..+..++..++.... .... 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-  364 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-  364 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh-
Confidence            6321                0 0000    1113344555555432       224578888888888875432 2222 


Q ss_pred             HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          282 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       282 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                          .+++.+.+.+.++++.+|..|+.+++.++.+.. ......+ ..+++.++..++++ ++.||..|+|+|+.++.
T Consensus       365 ----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         365 ----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             ----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence                246778888899999999999999999997542 2222222 36789999999999 99999999999999985

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.8e-11  Score=118.62  Aligned_cols=281  Identities=14%  Similarity=0.163  Sum_probs=166.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCC-cchH
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTK  154 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~  154 (368)
                      ++.+.+.+.++++..+..|+.++..++.+. ....... -..+++.++..+++++ +.+|..|+|+|+.++.... ....
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~-l~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPY-LPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTT-HHHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhccc-chhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            455556777889999999999999886432 1111111 1245788999999888 9999999999999875221 2222


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhc-
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-  232 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~-~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~-  232 (368)
                      ... ...++.++..+.++++.+++.|+++|.+++.... .....+-  ..++.++..+. ..+......+..++..++. 
T Consensus       474 ~~~-~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~--~il~~l~~~l~-~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         474 TYL-KPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFS-KYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HHT-TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHH--HHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHH
T ss_pred             hhh-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHh
Confidence            222 3578899999999999999999999999974211 1111111  12334444442 2222222222222222221 


Q ss_pred             --------------------------------------------CCCCCChhhhhchHHHHHHhh---------------
Q 017651          233 --------------------------------------------GKPQPPFDQVRPALPALAQLV---------------  253 (368)
Q Consensus       233 --------------------------------------------~~~~~~~~~~~~~~~~L~~lL---------------  253 (368)
                                                                  .............++.+..++               
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                                                        100000000001111111111               


Q ss_pred             --cCCCHHHHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 017651          254 --HSNDEEVLTDACWALSYLSDGTNDKIQA-VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGAL  330 (368)
Q Consensus       254 --~~~d~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l  330 (368)
                        ...+.++...++.+++.++..-...... +....+++.+...+.+.++.++..|+.++|.++..........++ .++
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence              0123445555555555555322211222 233456777888888899999999999999998766544443333 467


Q ss_pred             HHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhh
Q 017651          331 PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       331 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      +.+...|.++ ...++..|+|+++.|+...++.+.
T Consensus       709 ~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~  742 (888)
T d1qbkb_         709 PILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQ  742 (888)
T ss_dssp             HHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred             HHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7788888877 889999999999999875444443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-10  Score=119.51  Aligned_cols=275  Identities=14%  Similarity=0.130  Sum_probs=195.0

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .+..|++.+.+.|++.|+.|+..|.+.+... ....+.-....+++.|+++|.+++ ++||..|+.+|+.++..-++.  
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~--   79 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   79 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHh--
Confidence            3678889999999999999999999887643 211111122347899999999888 999999999999998854332  


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh------hhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHH
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS  228 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~------~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  228 (368)
                       .+ ...++.|+..+.+++...+..+..+|..+...-+      .....+. ...++.+...+....+..++..++.++.
T Consensus        80 -~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          80 -QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             -HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             -hH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence             12 2367888888888888889888888877653211      1111111 1144555555655667888999999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-CCCCcchHHHHH
Q 017651          229 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPAL  307 (368)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~  307 (368)
                      .+....+.........+++.++..+.++++.++..|+.+|+.++...++..    -..+++.++..+ .+.+...+..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHH
Confidence            888765444334456788889999999999999999999999986643321    123456666555 455666777888


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHH
Q 017651          308 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD  362 (368)
Q Consensus       308 ~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  362 (368)
                      .+++.++...+......+ ..+++.+...+.+. ++.+|..+..++..++...++
T Consensus       233 ~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChh
Confidence            999998865543222111 26788899999988 899999999999998875443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=6.1e-09  Score=87.97  Aligned_cols=201  Identities=12%  Similarity=0.042  Sum_probs=125.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHH-hhcCCCCHHHHHHHHHHHHHHhcCCCcc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVE-FLMREDYPQLQFEAAWALTNIASGTSEN  152 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~-lL~~~~~~~v~~~a~~~L~~l~~~~~~~  152 (368)
                      +.++.+++.++++++.++..|+..|..+....  .....     .++.+.. ++++++ +.++..|+.+|++++...+..
T Consensus        50 ~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~~~~-----~~~~l~~~~l~d~~-~~vr~~a~~aL~~~~~~~~~~  121 (276)
T d1oyza_          50 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDN-----VFNILNNMALNDKS-ACVRATAIESTAQRCKKNPIY  121 (276)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHH-----HHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccccc-----hHHHHHHHHhcCCC-hhHHHHHHHHHHHHccccchh
Confidence            35889999999999999999999999874322  11111     2444444 445566 899999999999998754332


Q ss_pred             hHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-------------hHHHH------HhcC---ChHHHHHH
Q 017651          153 TKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-------------CRDLV------LSQG---ALIPLLAQ  210 (368)
Q Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~-------------~~~~i------~~~~---~i~~l~~~  210 (368)
                      ..     .+++.+...+.++++.++..++.+++.+......             .+...      ...+   ..+.++..
T Consensus       122 ~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (276)
T d1oyza_         122 SP-----KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM  196 (276)
T ss_dssp             HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             hH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhh
Confidence            22     3467778888888888888888888876432210             00000      0000   12222333


Q ss_pred             hccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651          211 LNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  290 (368)
Q Consensus       211 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  290 (368)
                      + .+.+..++..+.+++..+..          ...+|.|++.+.+  +.++..++++|+.+.+           .+.++.
T Consensus       197 ~-~~~~~~~~~~~~~al~~~~~----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~-----------~~~~~~  252 (276)
T d1oyza_         197 L-QDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD-----------KTLLPV  252 (276)
T ss_dssp             T-TCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC-----------GGGHHH
T ss_pred             h-hhhhhhhhhhhccccchhhh----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC-----------HHHHHH
Confidence            3 34445555555555544321          2467777777763  4577888888887752           246788


Q ss_pred             HHHhcCC-CCcchHHHHHHHHH
Q 017651          291 LVELLGH-PSPSVLIPALRTVG  311 (368)
Q Consensus       291 L~~lL~~-~~~~v~~~a~~~l~  311 (368)
                      |..+|.. ++..++..|+..|.
T Consensus       253 L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         253 LDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHccCCCHHHHHHHHHHHc
Confidence            8888855 46788888887763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.3e-09  Score=108.19  Aligned_cols=286  Identities=14%  Similarity=0.129  Sum_probs=179.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchH
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK  154 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  154 (368)
                      .++.++..+.++++.++..|++++.++...-....... .-..+++.++..+.+++ +.++..|+++|.+++........
T Consensus       437 li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~-~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSC-HHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            46778888889999999999999998754211111222 23457888999888888 89999999999999863222211


Q ss_pred             HHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC------CChhhHHHHH-----------------------------
Q 017651          155 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG------DSPRCRDLVL-----------------------------  199 (368)
Q Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~------~~~~~~~~i~-----------------------------  199 (368)
                      .... .+++.++..+.......+..+..+++.++.      ..+.+.+.+.                             
T Consensus       515 p~~~-~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~  593 (888)
T d1qbkb_         515 PYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT  593 (888)
T ss_dssp             GGHH-HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            1111 345666667766666555555555555531      1111111110                             


Q ss_pred             --hcCCh-------HHHHHHhc----------------cccchhHHHHHHHHHHHhhcCCCCCChhhh--hchHHHHHHh
Q 017651          200 --SQGAL-------IPLLAQLN----------------ERAKLSMLRNATWTLSNFCRGKPQPPFDQV--RPALPALAQL  252 (368)
Q Consensus       200 --~~~~i-------~~l~~~l~----------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~L~~l  252 (368)
                        ..++.       +.++..+.                ...+.++...++.++..++..-........  ..+++.+...
T Consensus       594 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~  673 (888)
T d1qbkb_         594 ALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC  673 (888)
T ss_dssp             HSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH
T ss_pred             HhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH
Confidence              00000       01111110                012334445555556655543222211111  3467778888


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 017651          253 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY  332 (368)
Q Consensus       253 L~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~  332 (368)
                      +++.+++++..+..+++.++..........++ .+++.+...|.++.+.++..|++++|.|+..........+. .+++.
T Consensus       674 l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~  751 (888)
T d1qbkb_         674 MQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQ  751 (888)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHH
Confidence            88899999999999999888654433222222 36777788888888899999999999998655444333332 57888


Q ss_pred             HHHhhCCCC-CccHHHHHHHHHHHHhcCCHHHhh
Q 017651          333 LLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQ  365 (368)
Q Consensus       333 l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~i~  365 (368)
                      |+.++++++ ...++..+|.+|+.++..+|+.+.
T Consensus       752 L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~  785 (888)
T d1qbkb_         752 LVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA  785 (888)
T ss_dssp             HHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHH
Confidence            999998763 345899999999999988887764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.8e-09  Score=94.39  Aligned_cols=235  Identities=19%  Similarity=0.184  Sum_probs=157.3

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        76 i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ++.++..+.++  +..++..|+.++..+................+.+.+..++.+++ ++++..++.+|..++...++..
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence            56666666654  46788889999988865321111112223345677778888877 9999999999999987555444


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH---------------------HHHHhcCChHHHHHHhc
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR---------------------DLVLSQGALIPLLAQLN  212 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~---------------------~~i~~~~~i~~l~~~l~  212 (368)
                      ...+.....+.+...+.+++++++..++..+..++.......                     ..... ..++.+...+.
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~  330 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ-YLVPILTQTLT  330 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHH-HHhhhHHhhhh
Confidence            333333444556667778889999999999988863221110                     00111 12233333332


Q ss_pred             c------ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHc
Q 017651          213 E------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEA  285 (368)
Q Consensus       213 ~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~-~~~~~~~~~  285 (368)
                      .      +.+..++..+..++..++...+..   ....+++.+.+.++++++.++..++.+|+.++.+.. +..... -.
T Consensus       331 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~  406 (458)
T d1ibrb_         331 KQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VI  406 (458)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TT
T ss_pred             cchhhhccccccHHHHHHHHHHHHHHhccHh---hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HH
Confidence            1      223457888888888888764322   345677888889999999999999999999996532 221111 13


Q ss_pred             CChHHHHHhcCCCCcchHHHHHHHHHHhhcC
Q 017651          286 GVCPRLVELLGHPSPSVLIPALRTVGNIVTG  316 (368)
Q Consensus       286 ~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~  316 (368)
                      .+++.++..+.++++.+|..|++++|.++..
T Consensus       407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         407 QAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.3e-08  Score=100.70  Aligned_cols=233  Identities=13%  Similarity=0.158  Sum_probs=159.1

Q ss_pred             cHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 017651          118 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL  197 (368)
Q Consensus       118 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~  197 (368)
                      +++.+...+....++.++..|+.+|..+............ ..+++.++..+.+++..++..|+.+|+.++...+.   .
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~  206 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---I  206 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---H
Confidence            4455555565555588999999999998763322211111 13567778888899999999999999999866432   1


Q ss_pred             HHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChH
Q 017651          198 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND  277 (368)
Q Consensus       198 i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~  277 (368)
                      . -...++.++..+..+.+...++.++.++..+++..+..-......++|.+...+..++++++..++.++..++...+.
T Consensus       207 ~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         207 V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            1 123577788777666667777788889999887654433344577899999999999999999999998888754321


Q ss_pred             HHHHHHHcCChHHHHHh-------------------------------------cCCCCcchHHHHHHHHHHhhcCChHH
Q 017651          278 KIQAVIEAGVCPRLVEL-------------------------------------LGHPSPSVLIPALRTVGNIVTGDDFQ  320 (368)
Q Consensus       278 ~~~~~~~~~~~~~L~~l-------------------------------------L~~~~~~v~~~a~~~l~nl~~~~~~~  320 (368)
                      ...... ..+++.+...                                     ..+.++.+|..++.+++.++...++.
T Consensus       286 ~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~  364 (1207)
T d1u6gc_         286 EVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM  364 (1207)
T ss_dssp             CCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             hhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            111000 0111111111                                     12335678999999999998876655


Q ss_pred             HHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          321 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       321 ~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ....+. .+++.+...+.+. ++.+|..+..++..+..
T Consensus       365 l~~~~~-~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         365 LPEFYK-TVSPALISRFKER-EENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HHHHHT-TTHHHHHSTTSCS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcCC-chHHHHHHHHHHHHHHH
Confidence            544443 6889999999888 89999999999888764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.4e-07  Score=83.67  Aligned_cols=276  Identities=15%  Similarity=0.107  Sum_probs=177.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHH-hcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHHH
Q 017651           78 AMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV  156 (368)
Q Consensus        78 ~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  156 (368)
                      .+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..++.++..+.. .++.+..+
T Consensus       126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~f  202 (477)
T d1ho8a_         126 LFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVI  202 (477)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHHH
Confidence            3444455556656666666667665543 22222110 1111233333334555 7888889999999888 46777776


Q ss_pred             hh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHHhcccc
Q 017651          157 ID--HGAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERA  215 (368)
Q Consensus       157 ~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~--~i~~l~~~l~~~~  215 (368)
                      ..  ...++.|+..|..                 ....++..++.+++-++.+. .....+.+.+  .++.++.++....
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~~~~i~~l~~i~~~s~  281 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITI  281 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred             HHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            43  3346666666642                 12477889999999998764 4555665543  4888889987788


Q ss_pred             chhHHHHHHHHHHHhhcCCCCCCh------hhhhchHHHHHHhhcC---CCHHHHHHHHHHHHHh-------hc------
Q 017651          216 KLSMLRNATWTLSNFCRGKPQPPF------DQVRPALPALAQLVHS---NDEEVLTDACWALSYL-------SD------  273 (368)
Q Consensus       216 ~~~~~~~a~~~L~~l~~~~~~~~~------~~~~~~~~~L~~lL~~---~d~~v~~~a~~~l~~l-------~~------  273 (368)
                      -+.+.+-++.++.|++........      ....++++. +..|..   .|+++..+.-..--.|       +.      
T Consensus       282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         282 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            999999999999999976422111      111234444 444432   4676654433221111       11      


Q ss_pred             --------CChHHH-HHH--------HH--cCChHHHHHhcC----------CCCcchHHHHHHHHHHhhcCChHHHHHH
Q 017651          274 --------GTNDKI-QAV--------IE--AGVCPRLVELLG----------HPSPSVLIPALRTVGNIVTGDDFQTQCI  324 (368)
Q Consensus       274 --------~~~~~~-~~~--------~~--~~~~~~L~~lL~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~~  324 (368)
                              -++.+. +.+        -+  ..++..|+.+|.          +.++.+..-||.=||.++...|.....+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                    111111 111        11  145788889885          3467788899999999999999888878


Q ss_pred             HHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          325 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       325 ~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      -+.|+=..++.++.++ +++||.+|..|+.-+...
T Consensus       441 ~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         441 DKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            8889999999999999 999999999999887653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=5e-07  Score=87.91  Aligned_cols=275  Identities=14%  Similarity=0.081  Sum_probs=170.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCC-chHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcchHH
Q 017651           77 PAMVAGVWSDDSSLQLEATTQFRKLLSIERSP-PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKV  155 (368)
Q Consensus        77 ~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~-~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  155 (368)
                      ..+++.+.++++.++..++.++..++..+-+. .+.     .+++.|++.+.+++...++..|+.+|..++.........
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45667778888999999999998886532110 111     357888888887765678888999999998643332222


Q ss_pred             Hhh--CCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHH-HHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          156 VID--HGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRD-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       156 ~~~--~g~i~~L~~lL~--~~~~~v~~~a~~~L~nla~~~~~~~~-~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      +..  ...+..++..+.  ..+..++..++.+++++...-+..-. .......++.+...+ .+++++++..++.++..+
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT-QAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            221  122344444443  35689999999999998765432111 111112345566666 778899999999999999


Q ss_pred             hcCCCCCChhhhhchHHH-HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHH-----------------------------
Q 017651          231 CRGKPQPPFDQVRPALPA-LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ-----------------------------  280 (368)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~-L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~-----------------------------  280 (368)
                      +...+..-.......+.. +.....+.++.++..++..+..++....+...                             
T Consensus       252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~  331 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN  331 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            876443222222233332 33444566777777776666554421100000                             


Q ss_pred             ----------------------------HHHHcCChHH----HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcC
Q 017651          281 ----------------------------AVIEAGVCPR----LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYG  328 (368)
Q Consensus       281 ----------------------------~~~~~~~~~~----L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g  328 (368)
                                                  ......+++.    +...+.+.++..+..++.+++.++.+.......-.-..
T Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~  411 (861)
T d2bpta1         332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQ  411 (861)
T ss_dssp             HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence                                        0000112222    22334566777888888888888876653332222235


Q ss_pred             ChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          329 ALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       329 ~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +++.+...+.++ ++.+|..++|+++.++.
T Consensus       412 ~l~~l~~~l~d~-~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         412 ALPSILNLMNDQ-SLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc-chhhhhHHHHHHHHHHH
Confidence            788899999998 99999999999999875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.6e-07  Score=88.49  Aligned_cols=278  Identities=17%  Similarity=0.192  Sum_probs=173.3

Q ss_pred             cHHHHHHhhcCCC--HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCc
Q 017651           75 SLPAMVAGVWSDD--SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSE  151 (368)
Q Consensus        75 ~i~~l~~~l~~~~--~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~  151 (368)
                      -++.+++.+.+++  ...+..++.++..++..- .+..-.-.-..+++.+++.+.+++ +..++..|+.++.+.......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~-~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            4778888887654  566777888888876432 111111112346788888886543 268999999999887763222


Q ss_pred             ch-HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHh
Q 017651          152 NT-KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF  230 (368)
Q Consensus       152 ~~-~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l  230 (368)
                      .. ......-+++.+...+.+++++++..++.+|..++...+..-...+.......+...+ .+.+.++...++..+..+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHH
Confidence            11 1111122467777888889999999999999999876554322222222333344444 566677777776666666


Q ss_pred             hcCC----------------C-CCChh----hhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHH
Q 017651          231 CRGK----------------P-QPPFD----QVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAV  282 (368)
Q Consensus       231 ~~~~----------------~-~~~~~----~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~  282 (368)
                      +...                + .....    ....++|.+...+..       ++..++..+..++..++....+..   
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  363 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---
Confidence            5311                1 01111    113344555555432       123477777777777764322211   


Q ss_pred             HHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcC
Q 017651          283 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG  359 (368)
Q Consensus       283 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  359 (368)
                      + ..+++.+...+.++++..+..++.+++.++.+.......-.-..+++.+...+.++ ++.++..|+|+++.++..
T Consensus       364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHH
Confidence            1 12355666777888999999999999999876543322222336788899999998 999999999999999863

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.1e-07  Score=88.14  Aligned_cols=277  Identities=19%  Similarity=0.172  Sum_probs=176.3

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch
Q 017651           76 LPAMVAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        76 i~~l~~~l~~~--~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      ++.++..+.++  +.+.+..|+..+...+..............-+++.+...+.+++ ++++..++.+|..++...++..
T Consensus       174 l~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence            45566666544  46778888888877765321100111112234666777777777 8999999999999988666665


Q ss_pred             HHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH--------------------HHhcCChHHHHHHhcc
Q 017651          154 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL--------------------VLSQGALIPLLAQLNE  213 (368)
Q Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~--------------------i~~~~~i~~l~~~l~~  213 (368)
                      ...+.....+.+...+.+.+.+++..++..+..++.........                    ......++.+...+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            55555556677777888888999998888888776422111000                    0001122333333321


Q ss_pred             ------ccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 017651          214 ------RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV  287 (368)
Q Consensus       214 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  287 (368)
                            ..+..+...+..++..++...+.   .....+++.+...+.+.++..+..++.+++.+..+.......-.-..+
T Consensus       333 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~  409 (876)
T d1qgra_         333 QDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA  409 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence                  11234667777777777654322   223456677777888889999999999999998764433222223357


Q ss_pred             hHHHHHhcCCCCcchHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          288 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       288 ~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~-~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      ++.+...+.++++.++..|+++++.++...+.... ...-..+++.+...+.+  ++.++..++|++.+++.
T Consensus       410 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999864332110 00001234555555543  67899999999999875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.63  E-value=3e-09  Score=77.08  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHH
Q 017651          127 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIP  206 (368)
Q Consensus       127 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~  206 (368)
                      ++++ +.+|..|+++|+.+..            ..++.|+..|.++++.++..++++|+++...           +.++.
T Consensus         2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~   57 (111)
T d1te4a_           2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEP   57 (111)
T ss_dssp             CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHH
T ss_pred             CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHH
Confidence            4445 6788888888765422            3678899999999999999999999987532           14788


Q ss_pred             HHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 017651          207 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS  269 (368)
Q Consensus       207 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~  269 (368)
                      |+.+| .++++.++..++++|..+..          ...++.|..++.++++.|+..|+.+|.
T Consensus        58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999 78899999999999998753          257889999999999999999988763

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.7e-06  Score=82.55  Aligned_cols=269  Identities=13%  Similarity=0.061  Sum_probs=173.0

Q ss_pred             HHHHH-HhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCCcch
Q 017651           76 LPAMV-AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENT  153 (368)
Q Consensus        76 i~~l~-~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~  153 (368)
                      +..++ ..+.++|++.+..|-..|.++...+  +       .+++..|.+.+.+.+ ++.+|..|+-.|.|.........
T Consensus         6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           6 FAQLLENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            44444 4467999999999999998875321  1       135677888886543 36889999989988765322111


Q ss_pred             HH------------HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHH
Q 017651          154 KV------------VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSML  220 (368)
Q Consensus       154 ~~------------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~  220 (368)
                      ..            -....+-..++..+.++++.++..++.+++.++... |...    ....++.|+..+....+..++
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHH
Confidence            10            001122356677788889999999999999997431 1100    011456666776445566777


Q ss_pred             HHHHHHHHHhhcCCCCCChh---hhhchHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHh
Q 017651          221 RNATWTLSNFCRGKPQPPFD---QVRPALPALAQLVHS--NDEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVEL  294 (368)
Q Consensus       221 ~~a~~~L~~l~~~~~~~~~~---~~~~~~~~L~~lL~~--~d~~v~~~a~~~l~~l~~~~~~~~~-~~~~~~~~~~L~~l  294 (368)
                      ..++.+|..+|...+.....   ....+++.+...+.+  .+..++..++.++.++...-..... ......+++.+...
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  232 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA  232 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence            88899999999765322222   223445555555443  3578999999999998865443221 11222356777888


Q ss_pred             cCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc
Q 017651          295 LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA  358 (368)
Q Consensus       295 L~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~  358 (368)
                      +.++++.++..++.++..++...+......+..-+...+.....+. ++.++..++-.+..++.
T Consensus       233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence            8999999999999999999875554333333322223334455565 88899999888877764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.58  E-value=7.6e-09  Score=74.86  Aligned_cols=109  Identities=21%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 017651          169 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA  248 (368)
Q Consensus       169 L~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  248 (368)
                      |.++++.+|..|+++|+.+..            ..+++|+..| .+++..++..++++|.++..          ...+|.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHH
Confidence            456778888888998887631            2578888888 78899999999999987653          257899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHH
Q 017651          249 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG  311 (368)
Q Consensus       249 L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  311 (368)
                      |..+|.++++.|+..++++|+.+..  +         +.++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~--~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc--c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999998852  2         24777888999999999999988763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.4e-06  Score=77.11  Aligned_cols=228  Identities=14%  Similarity=0.161  Sum_probs=156.0

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCCCCCchHHHH--hcCcHHHHHHhhcC----------------CCCHHHHHHHHHHHHHH
Q 017651           84 WSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMR----------------EDYPQLQFEAAWALTNI  145 (368)
Q Consensus        84 ~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i--~~g~i~~Lv~lL~~----------------~~~~~v~~~a~~~L~~l  145 (368)
                      .+++.+.+..|+.++..++..  .+....+.  +...++.|+..|..                +...+++++++.|++-+
T Consensus       175 ~~~~~~~~~i~v~~lq~llr~--~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL  252 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAVI--PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL  252 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTS--HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHhcC--ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH
Confidence            567788888899999888763  33444443  34457777777753                11258899999999999


Q ss_pred             hcCCCcchHHHhhC--CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh-----hhHHHHHhcCChHHHHHHhccc--c
Q 017651          146 ASGTSENTKVVIDH--GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP-----RCRDLVLSQGALIPLLAQLNER--A  215 (368)
Q Consensus       146 ~~~~~~~~~~~~~~--g~i~~L~~lL~-~~~~~v~~~a~~~L~nla~~~~-----~~~~~i~~~~~i~~l~~~l~~~--~  215 (368)
                      +. +++....+.+.  +.++.++.+++ +....+.+.++.+|.|++....     .+...++..++ .+++..|...  .
T Consensus       253 SF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~-l~~l~~L~~r~~~  330 (477)
T d1ho8a_         253 TF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYS  330 (477)
T ss_dssp             TT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCS
T ss_pred             Hc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcch-hHHHHHHhcCCCC
Confidence            98 46666666665  34888888886 5678999999999999986432     12334455544 4556666332  3


Q ss_pred             chhHHHHHHHHHHHh---------------------hcCCCCCChh------------hhhchHHHHHHhhc--------
Q 017651          216 KLSMLRNATWTLSNF---------------------CRGKPQPPFD------------QVRPALPALAQLVH--------  254 (368)
Q Consensus       216 ~~~~~~~a~~~L~~l---------------------~~~~~~~~~~------------~~~~~~~~L~~lL~--------  254 (368)
                      |+++....-..-..|                     .++.|.-...            ....++..|+++|.        
T Consensus       331 Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~  410 (477)
T d1ho8a_         331 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDV  410 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccc
Confidence            665544332221111                     1111111000            01246778888885        


Q ss_pred             --CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          255 --SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       255 --~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                        ++|+.+..-||.=|+.++.+.+.....+-+.|+=..+++++.+++++++..|+.|++.+..
T Consensus       411 ~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         411 NAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              3478899999999999998877776777777999999999999999999999999998764

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.00013  Score=60.51  Aligned_cols=209  Identities=14%  Similarity=0.114  Sum_probs=153.4

Q ss_pred             HhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh----HHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhh
Q 017651          156 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC  231 (368)
Q Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~----~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~  231 (368)
                      +...+.+..|+..|..-+-+-+..+..+++++.......    .+.+...  .+.+..++....++++.-.+...|...+
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence            444577888889888888899999999999998654332    2555543  3555555655567777777777777777


Q ss_pred             cCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhcCCCCcchHHHHHH
Q 017651          232 RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALR  308 (368)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~a~~  308 (368)
                      +.............+..+.+.++.++-++..+|..++.-+..........++..   .++..+..+|.+++.-.+..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            664333333445566677788888999999999999999887766666666655   35777788899999999999999


Q ss_pred             HHHHhhcCCh--HHH-HHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc--CCHHHhhhc
Q 017651          309 TVGNIVTGDD--FQT-QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQVM  367 (368)
Q Consensus       309 ~l~nl~~~~~--~~~-~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~i~~v  367 (368)
                      .||.+.....  ... .++-+..-+..++.+|++. +..++-+|-.++--+++  ..|..|..|
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~I  285 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDI  285 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHH
Confidence            9999985433  222 2333345689999999999 99999999999988888  455665544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0065  Score=50.15  Aligned_cols=243  Identities=12%  Similarity=0.125  Sum_probs=168.9

Q ss_pred             HHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch----HHHhhC-CChHHHHHhhCCCCHHHHHHHHHHHH
Q 017651          111 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT----KVVIDH-GAVPIFVKLLASPSDDVREQAVWALG  185 (368)
Q Consensus       111 ~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~  185 (368)
                      .++...+++..|+..|..-+ -+.|..++.+++++.......+    +.+... .++..|+....  ++++.-.|...|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~-fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCC-CchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHH
Confidence            34566788999999999888 7999999999999987544433    333322 23444444443  4566666777777


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCCCChhh----hhchHHHHHHhhcCCCHHHH
Q 017651          186 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ----VRPALPALAQLVHSNDEEVL  261 (368)
Q Consensus       186 nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~~L~~lL~~~d~~v~  261 (368)
                      ..+... .....++....+..+.+.+ +.++-++...|..++..+....+......    ...++.....+|.+++--.+
T Consensus       140 Ecik~e-~lak~iL~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRHE-PLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTSH-HHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhhH-HHHHHHHccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            777665 4567777777888888888 77888899999999987665432211111    24566777889999999999


Q ss_pred             HHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhcCCh---HHHHHHHHc--CChHHH
Q 017651          262 TDACWALSYLSDGTNDK---IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD---FQTQCIITY--GALPYL  333 (368)
Q Consensus       262 ~~a~~~l~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~~~~--g~l~~l  333 (368)
                      ..++..|+.+.......   ...+-+..-+..++.+|++.+..++..|..+.--+++...   .....+...  .++..|
T Consensus       218 RqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl  297 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL  297 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHH
Confidence            99999999998553322   1223333568889999999999999999999998887543   333333332  567777


Q ss_pred             HHhhCCC-CCccHHHHHHHHHHHHhc
Q 017651          334 LGLLTHS-HKKSIKKEACWTISNITA  358 (368)
Q Consensus       334 ~~ll~~~-~~~~v~~~a~~~l~nl~~  358 (368)
                      .++..+. ++.....+=...+.-|..
T Consensus       298 ~~f~~d~~~DeqF~~EK~~lI~~I~~  323 (330)
T d1upka_         298 SKFQNDRTEDEQFNDEKTYLVKQIRD  323 (330)
T ss_dssp             HHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCCchhhHHHHHHHHHHHHHh
Confidence            7766543 366677776666666654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.90  E-value=0.057  Score=45.55  Aligned_cols=241  Identities=15%  Similarity=0.121  Sum_probs=140.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCch----HHHHhcC---cHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           75 SLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPI----EEVIQSG---VVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        75 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~----~~~i~~g---~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      .+-.|++.+..-+.+........+    ... ....    +.+...|   .+..+.+++.+..- .. .+|...|..++.
T Consensus        44 kF~~Lv~~lR~~~~e~l~~v~~~~----~~~-~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~l-s~-~ea~~~l~~l~~  116 (336)
T d1lsha1          44 KFLRLTAFLRNVDAGVLQSIWHKL----HQQ-KDYRRWILDAVPAMATSEALLFLKRTLASEQL-TS-AEATQIVASTLS  116 (336)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHH----TTS-HHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH----hcC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC-CH-HHHHHHHHHHhc
Confidence            366777777766655444333222    111 1112    2222333   35556777766552 22 234445555554


Q ss_pred             CCCcchHHHhhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhc---cccc
Q 017651          148 GTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLN---ERAK  216 (368)
Q Consensus       148 ~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nla~----~~~~~~~~i~~~~~i~~l~~~l~---~~~~  216 (368)
                      .. .-..     ..+..+..++.+    .++.++..+..++|++..    ..+.+.+     ..++.+...+.   ...+
T Consensus       117 ~~-~Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~  185 (336)
T d1lsha1         117 NQ-QATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAK  185 (336)
T ss_dssp             TC-CCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTC
T ss_pred             cC-CCCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccc
Confidence            22 2222     234556667765    468899999999998863    2222222     23455555542   3345


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 017651          217 LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  289 (368)
Q Consensus       217 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-------~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~  289 (368)
                      .+-...++.+|+|+-..          ..++.|..++..       .+..++..|+|++..++...+...        .+
T Consensus       186 ~~~~~~~LkaLGN~g~p----------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~  247 (336)
T d1lsha1         186 EEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QE  247 (336)
T ss_dssp             HHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HH
T ss_pred             hHHHHHHHHHHhccCCH----------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HH
Confidence            56666788999998642          567888888743       246899999999999998765443        23


Q ss_pred             HHHHhc--CCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhc-CCH
Q 017651          290 RLVELL--GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNR  361 (368)
Q Consensus       290 ~L~~lL--~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~  361 (368)
                      .+.+++  ...++++|..|+.++-..  .++ .       ..+..+...+..+.+..|+....-.|.|++. .+|
T Consensus       248 ~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~-~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         248 IVLPIFLNVAIKSELRIRSCIVFFES--KPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHHHHHHT--CCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhc--CCC-H-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence            344554  334678898888877542  121 1       1244566666655467777777777888876 444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.89  E-value=0.00023  Score=57.35  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=15.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHH
Q 017651          119 VPRFVEFLMREDYPQLQFEAAWA  141 (368)
Q Consensus       119 i~~Lv~lL~~~~~~~v~~~a~~~  141 (368)
                      +..|..++++++ +.||..|++.
T Consensus        68 ~~~L~~Ll~D~d-~~VR~~AA~~   89 (233)
T d1lrva_          68 VEALTPLIRDSD-EVVRRAVAYR   89 (233)
T ss_dssp             GGGGGGGTTCSS-HHHHHHHHTT
T ss_pred             HHHHHHHhcCCC-HHHHHHHHHH
Confidence            445666777777 7888777654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.74  E-value=0.00063  Score=54.74  Aligned_cols=41  Identities=17%  Similarity=0.168  Sum_probs=28.3

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 017651          125 FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL  184 (368)
Q Consensus       125 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L  184 (368)
                      +|.++. .+++..|++                  .-.+..|..+++++++.|+..+++.|
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            556666 778766542                  12356777888899999998887654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.018  Score=55.87  Aligned_cols=179  Identities=8%  Similarity=0.077  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--------HHHHHh--c
Q 017651          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC--------RDLVLS--Q  201 (368)
Q Consensus       132 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~--------~~~i~~--~  201 (368)
                      +.++..++|+++..+....  ....  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhcc--HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            7799999999999887422  2222  247899999999999999999999999997532110        000000  0


Q ss_pred             CChHHHHHHhccccch----hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----cC-CCHHHHHHHHHHHHHhh
Q 017651          202 GALIPLLAQLNERAKL----SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV----HS-NDEEVLTDACWALSYLS  272 (368)
Q Consensus       202 ~~i~~l~~~l~~~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL----~~-~d~~v~~~a~~~l~~l~  272 (368)
                      ..+..++..+......    .....++.++..+....+.........+++.+...+    .+ .++.....+..+++.+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            0233444444222111    112345566665554332222223344555555444    22 24677777878888776


Q ss_pred             cCC-hHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 017651          273 DGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT  315 (368)
Q Consensus       273 ~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~~  315 (368)
                      ... ++.... +...+++.+...+..........++..++.+..
T Consensus       628 ~~~~~~~~~~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         628 NYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HhcCchhHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            432 222222 233456777777766666667777777766653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.21  Score=47.89  Aligned_cols=263  Identities=14%  Similarity=0.109  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCCcch-------HHHhh
Q 017651           86 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-------KVVID  158 (368)
Q Consensus        86 ~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~~~~  158 (368)
                      ..+..+..+++.+..+.... .+  ..  -..+++.++.+|.+++ +.++..|++++..++.......       ...+.
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~-~~--~~--~~~~~~~l~~~L~~~~-~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~  543 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQL-TK--AQ--LIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS  543 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGS-CH--HH--HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred             chHHHHHHHHHHHHHHHhhc-cH--HH--HHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHhhcccccchhhccHHHHH
Confidence            44678888888888875432 11  11  1346899999999887 8999999999999986332211       00011


Q ss_pred             ---CCChHHHHHhhCCCC--H-H--HHHHHHHHHHHhh---CCC-hhhHHHHHhcCChHHHHHHh----ccccchhHHHH
Q 017651          159 ---HGAVPIFVKLLASPS--D-D--VREQAVWALGNVA---GDS-PRCRDLVLSQGALIPLLAQL----NERAKLSMLRN  222 (368)
Q Consensus       159 ---~g~i~~L~~lL~~~~--~-~--v~~~a~~~L~nla---~~~-~~~~~~i~~~~~i~~l~~~l----~~~~~~~~~~~  222 (368)
                         ...+..++..+....  . .  ..+.++.++..+.   .+. ..+...     .++.+...+    ....+......
T Consensus       544 p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~-----i~~~l~~~~~~~~~~~~~~~~~~~  618 (959)
T d1wa5c_         544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHY  618 (959)
T ss_dssp             TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCccchHHHHH
Confidence               012344444443321  1 1  1123555555543   221 112222     233333332    22335666677


Q ss_pred             HHHHHHHhhcCCC-CCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----ChH---HHHHHHH------cC--
Q 017651          223 ATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TND---KIQAVIE------AG--  286 (368)
Q Consensus       223 a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~----~~~---~~~~~~~------~~--  286 (368)
                      +..++..+..... .........++|.+...++.+..+...+++..+..+...    ++.   ....++.      .+  
T Consensus       619 ~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  698 (959)
T d1wa5c_         619 TFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNI  698 (959)
T ss_dssp             HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTH
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhhhH
Confidence            7778887776532 222233356777777777666555555555554443311    110   0000000      01  


Q ss_pred             -----------------------ChHHHHHhcCCCCcchHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhCCCCC
Q 017651          287 -----------------------VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHK  342 (368)
Q Consensus       287 -----------------------~~~~L~~lL~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~g~l~~l~~ll~~~~~  342 (368)
                                             ++..+..++...  .....++..++.++...+. .....+. .++..++..+.+.+.
T Consensus       699 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~ll~~ii~~~~~~~~~~~l~-~i~~~~~~~l~~~~~  775 (959)
T d1wa5c_         699 PAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASK--AYEVHGFDLLEHIMLLIDMNRLRPYIK-QIAVLLLQRLQNSKT  775 (959)
T ss_dssp             HHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCT--TTHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHGGGSSCC
T ss_pred             HHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCC--cchHHHHHHHHHHHHHCchhhhHhHHH-HHHHHHHHHHHhccc
Confidence                                   122222233322  2234566666666544432 1121222 345556666666646


Q ss_pred             ccHHHHHHHHHHHHhc-CCHH
Q 017651          343 KSIKKEACWTISNITA-GNRD  362 (368)
Q Consensus       343 ~~v~~~a~~~l~nl~~-~~~~  362 (368)
                      +.+....+|.++.++. .+++
T Consensus       776 ~~~~~~~~~~~~~~~~~~~~~  796 (959)
T d1wa5c_         776 ERYVKKLTVFFGLISNKLGSD  796 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHH
Confidence            7788889999998875 3444

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.22  Score=41.94  Aligned_cols=158  Identities=11%  Similarity=0.101  Sum_probs=102.1

Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 017651           78 AMVAGVWSDD-SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----E------DYPQLQFEAAWALTNIA  146 (368)
Q Consensus        78 ~l~~~l~~~~-~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~v~~~a~~~L~~l~  146 (368)
                      ..+..|+++- .+.....+..|+--+..++..-++.+ ..+++..|+.+|..    .      .++..+.+++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            3445555433 33444555666555554312223445 45567777777641    1      12568899999999998


Q ss_pred             cCCCcchHHHhhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHHHH----------hcCChHHHHHHhccc
Q 017651          147 SGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--PRCRDLVL----------SQGALIPLLAQLNER  214 (368)
Q Consensus       147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~--~~~~~~i~----------~~~~i~~l~~~l~~~  214 (368)
                      .........+-..+++..++..|.++...++..|+..|..+|...  +.....++          +.+-+.+++..+...
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence            843333444455688999999999999999999999999998432  12222222          445678888888666


Q ss_pred             cchhHHHHHHHHHHHhhcCCCC
Q 017651          215 AKLSMLRNATWTLSNFCRGKPQ  236 (368)
Q Consensus       215 ~~~~~~~~a~~~L~~l~~~~~~  236 (368)
                      .+.+....++..+-.++.+.+.
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSC
T ss_pred             ccHHHHHHHHHHHHHHHcCccc
Confidence            6778877777777778876543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.37  E-value=0.28  Score=41.10  Aligned_cols=171  Identities=16%  Similarity=0.110  Sum_probs=104.4

Q ss_pred             cHHHHHHhhcC----CCHHHHHHHHHHHHHhhcC---CCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           75 SLPAMVAGVWS----DDSSLQLEATTQFRKLLSI---ERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        75 ~i~~l~~~l~~----~~~~~~~~a~~~l~~l~s~---~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      .+..+.+++++    +++.+...++-.+..++..   ........++ ..+...+.+.+...+ .+-+..++.+|+|+-.
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~-~~l~~~l~~~~~~~~-~~~~~~~LkaLGN~g~  201 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAK-EEEIVLALKALGNAGQ  201 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHH-HHHHHHHHHhhcccc-hHHHHHHHHHHhccCC
Confidence            45555555554    4566666666666655432   2111111111 112333334445556 6777788999999864


Q ss_pred             CCCcchHHHhhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-cccchhH
Q 017651          148 GTSENTKVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSM  219 (368)
Q Consensus       148 ~~~~~~~~~~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~-~~~~~~~  219 (368)
                        +         +.++.|..++.+       .+..++..|+|+|.+++...|..        +.+.++.++. ...+.++
T Consensus       202 --p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~Ev  262 (336)
T d1lsha1         202 --P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSEL  262 (336)
T ss_dssp             --G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHH
T ss_pred             --H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCChHH
Confidence              2         356777777753       25789999999999998776532        2345555553 3447888


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC
Q 017651          220 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGT  275 (368)
Q Consensus       220 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~~l~~~~  275 (368)
                      +..|...|.. | . |  .    ...+..+...+.. .+.+|...+...|.+++...
T Consensus       263 RiaA~~~lm~-t-~-P--~----~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         263 RIRSCIVFFE-S-K-P--S----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHHHHH-T-C-C--C----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHh-c-C-C--C----HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence            7777777654 2 1 2  1    1355566666654 47889999999999998653

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.81  E-value=2.2  Score=35.41  Aligned_cols=165  Identities=12%  Similarity=0.143  Sum_probs=97.4

Q ss_pred             CcchHHHhhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchh
Q 017651          150 SENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS  218 (368)
Q Consensus       150 ~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~  218 (368)
                      ..+...+ ..+|+..|+.+|..           .+......++.||..+....+.....+...+++..+...+ .++...
T Consensus        36 ~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L-~s~~~~  113 (343)
T d2bnxa1          36 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM-DPAVPN  113 (343)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTC-CTTSHH
T ss_pred             chHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHcc-CCCchH
Confidence            3444555 34456666665531           1245777899999999887666656666667788888888 778889


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCC
Q 017651          219 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP  298 (368)
Q Consensus       219 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~~d~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  298 (368)
                      ++..++..|..+|.......      +.+               .++.++.+..        ..-+.+-+..++..|...
T Consensus       114 tr~~a~elL~~lc~~~~~~~------g~~---------------~vL~Al~~~~--------~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPED------MNE---------------RVLEAMTERA--------EMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTT------HHH---------------HHHHHHHHHH--------HHHTSCTTHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHhccCCCc------hHH---------------HHHHHHHHHH--------HhcCCCcHHHHHHHHhcc
Confidence            99999999999997642111      111               1111121111        112234456666666543


Q ss_pred             -CcchHHHHHHHHHHhhcCCh------HHHHHHHHcCChHHHHHhhCCCCCccHH
Q 017651          299 -SPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSHKKSIK  346 (368)
Q Consensus       299 -~~~v~~~a~~~l~nl~~~~~------~~~~~~~~~g~l~~l~~ll~~~~~~~v~  346 (368)
                       +.+.+..++..|-.++.+.+      ..+..+...|+.+.+-.+ ...+++.+.
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l-~~~~~~~L~  218 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL-REIENEDMK  218 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH-TTCCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHH-HccCChHHH
Confidence             45677777777777776655      223344556766655444 443244443

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=2.8  Score=34.67  Aligned_cols=189  Identities=13%  Similarity=0.069  Sum_probs=113.6

Q ss_pred             hhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCCCC
Q 017651          157 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ  236 (368)
Q Consensus       157 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  236 (368)
                      ++...+..|+.++.++|+.=|+.....|..+-+.-...|..+... ....+.+.+.......-...+++.++.+..+...
T Consensus       130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~  208 (343)
T d2jaka1         130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIINGFAL  208 (343)
T ss_dssp             SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence            333456788889999999999999999999987777777665553 4556666664444555567788888888887633


Q ss_pred             C-ChhhhhchHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcCCCCcchHHHHHHHHHHhh
Q 017651          237 P-PFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV  314 (368)
Q Consensus       237 ~-~~~~~~~~~~~L~~lL~~~d-~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~nl~  314 (368)
                      + ......-....++.+..+.. ...-..-..++......++.....+     +..++++=-..++.-...-+.-|..+.
T Consensus       209 plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el~~il  283 (343)
T d2jaka1         209 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEIL  283 (343)
T ss_dssp             SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence            3 22222334455666665543 3334444445555554444433222     333444332233334455566666665


Q ss_pred             cCCh-HHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHH
Q 017651          315 TGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI  353 (368)
Q Consensus       315 ~~~~-~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l  353 (368)
                      ...+ ...+.+.. .+...+..+++++ +..|.+.|....
T Consensus       284 ~~~~~~~f~~~~~-~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         284 DVIEPSEFVKIME-PLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HTCCHHHHHHHHH-HHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HhCCHHHHHHHHH-HHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            4433 33333333 5677788888888 888888877655

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=1  Score=32.30  Aligned_cols=76  Identities=9%  Similarity=0.014  Sum_probs=58.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR------EDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~------~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..+.+.|+++++..++.|+..+..++..........+...+++..|+.++..      .+ +.|+..++..+...+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence            4577788888999999999999999877655423334567788899999999963      33 7899999999988776


Q ss_pred             CCC
Q 017651          148 GTS  150 (368)
Q Consensus       148 ~~~  150 (368)
                      ..+
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            443

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.38  E-value=3  Score=31.82  Aligned_cols=130  Identities=8%  Similarity=-0.051  Sum_probs=74.4

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcC-CCHHHHHHHHHHHH-HhhcCChHHHHHHHHcCChHH
Q 017651          213 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPR  290 (368)
Q Consensus       213 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~lL~~-~d~~v~~~a~~~l~-~l~~~~~~~~~~~~~~~~~~~  290 (368)
                      .++--+.+..++..+........       ...++.+..++.+ ++..+.-..+..++ .+...+++         ..+.
T Consensus        60 ~~~~~E~r~~a~~ll~~~~~~~~-------~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~~---------~~~~  123 (213)
T d2b6ca1          60 QKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---------LPTI  123 (213)
T ss_dssp             TSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG---------HHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhhh---------HHHH
Confidence            44445566666665554433211       1234444555544 44666665665553 34333322         2455


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhCCCCCccHHHHHHHHHHHHhcCCHHHhhh
Q 017651          291 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQV  366 (368)
Q Consensus       291 L~~lL~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~g~l~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~i~~  366 (368)
                      +.....+++.-++..|+.+.-......+  .+.     ++..+..++.++ +..|++...|+|..++..+|+-+..
T Consensus       124 l~~w~~s~~~w~rR~aiv~~l~~~~~~~--~~~-----~~~~~~~~~~d~-e~~i~kAigW~Lre~~k~~p~~v~~  191 (213)
T d2b6ca1         124 FALFYGAENFWNRRVALNLQLMLKEKTN--QDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEE  191 (213)
T ss_dssp             HHHHTTCSSHHHHHHHHHTTTTCGGGCC--HHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHccc--HHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            6677788887777766544322222222  222     234455666666 8899999999999999988887754

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.00  E-value=0.59  Score=33.65  Aligned_cols=74  Identities=14%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS  147 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~  147 (368)
                      +++..|.+.++++++..++.|+..+..++..........+...+++..|..++.+..+..++..++..+...+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            35777888888999999999998888777643222334455677888888888765447899999988888765

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=1.2  Score=37.00  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=44.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC
Q 017651           76 LPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        76 i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~l~~~  148 (368)
                      +..|+..+.|.|+..|......++.+...  -......+...+...+.+++..........+.+++++.+..+
T Consensus       135 i~~Ll~lf~S~D~rER~~lk~~l~~iy~k--f~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~g  205 (343)
T d2jaka1         135 VLQLLELFDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING  205 (343)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Confidence            46667777788887777777777777553  334444555555666777665443344556677777777665

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.22  E-value=1.6  Score=31.15  Aligned_cols=74  Identities=9%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhccccchhHHHHHHHHHHHhhcCC
Q 017651          161 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK  234 (368)
Q Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~~L~nla~~~-~~~~~~i~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  234 (368)
                      ++..|..-|.++++.++..|+.+|-.+..+. +.++..+...+++..+..++...++..++..++..+...+...
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            5666777788889999999999999998775 5577888888888999888866668889999988888877654

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=1.8  Score=30.88  Aligned_cols=76  Identities=11%  Similarity=-0.076  Sum_probs=56.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCCCCchHHHHhcCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHhcC
Q 017651           74 ESLPAMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR-----EDYPQLQFEAAWALTNIASG  148 (368)
Q Consensus        74 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~s~~~~~~~~~~i~~g~i~~Lv~lL~~-----~~~~~v~~~a~~~L~~l~~~  148 (368)
                      +++..+.+.++++++..++.|+..+..++..........+....++..|+.++..     ..++.|+..++..+...+..
T Consensus        38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4577788888899999999999888877765433334556677888999999863     12378999999988887764


Q ss_pred             C
Q 017651          149 T  149 (368)
Q Consensus       149 ~  149 (368)
                      .
T Consensus       118 f  118 (143)
T d1mhqa_         118 F  118 (143)
T ss_dssp             C
T ss_pred             c
Confidence            3