Citrus Sinensis ID: 017668


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MGFLQFNAAAAAILFSLLLPLLLLNLHSAKADTFTNNINATTTATENGNDFVPERKSLGGGKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAALFS
cccEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHccccEEEEccccccHHHHHHHHHHHcccccccEEEEEcccEEEEEEEEccEEEEEEEEcEEEEEEEcccccEEEccccccccccccccccEEEcccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHc
cHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHcccccccccccccEEEEccccccccccccccccccccHcccccHHHHHHcccHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEccEEEEEEEccEEEEEcccccccEEEEcccccccHcccccEEEEEcEEEEccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEHHHHHHHHHcccccHccccccccccccccccccHHHHHHHHHHHc
MGFLQFNAAAAAILFSLLLPLLLLNLHsakadtftnninatttatengndfvperkslgggkcnifqgkwvydasyplyshcpfvdpefdcqkygrpddiylkyrfnglyflekfrgkkimfvgdslsLNQWQSLACMIhswapktkYSVVRTAVLSSITFQEFGLQILLYRTTYLVDlvrepagtvlrldsikggnawrGMDMLIFNTWHwwthtgrsqpfdyIREGRKLYKDMNRLVAFYKGLTTWARWVnfnvdptktkvffqgispthyegrdwnepskscsgqtkpyfgykypagtpmpWVVLQKVFSrlrkpvylldITRLsqyrkdahpseygghsddcshwclpglpdtwNQLMYAALFS
MGFLQFNAAAAAILFSLLLPLLLLNLHSAKADTFTNNINATttatengndfvperkslgggKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRepagtvlrldsikggnAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPThyegrdwnepskscSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAALFS
MGFlqfnaaaaailfslllpllllnlhsakadtftnninatttatengnDFVPERKSLGGGKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAALFS
**FLQFNAAAAAILFSLLLPLLLLNLHSAKADTFTNNINATTTATENGNDFVPERKSLGGGKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDW*********QTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAAL**
*****FNAAAAAILFSLLLPLLLLNLHS***********************************NIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAALFS
MGFLQFNAAAAAILFSLLLPLLLLNLHSAKADTFTNNINATTTATENGNDFVPERKSLGGGKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKD**********DDCSHWCLPGLPDTWNQLMYAALFS
MGFLQFNAAAAAILFSLLLPLLLLNL**********************************GKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAALFS
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGFLQFNAAAAAILFSLLLPLLLLNLHSAKADTFTNNINATTTATENGNDFVPERKSLGGGKCNIFQGKWVYDASYPLYSHCPFVDPEFDCQKYGRPDDIYLKYRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLMYAALFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
225446561364 PREDICTED: uncharacterized protein LOC10 0.899 0.909 0.661 1e-139
224135837368 predicted protein [Populus trichocarpa] 0.959 0.959 0.663 1e-139
224145260317 predicted protein [Populus trichocarpa] 0.815 0.946 0.750 1e-139
255568301350 conserved hypothetical protein [Ricinus 0.910 0.957 0.662 1e-139
449463298371 PREDICTED: uncharacterized protein LOC10 0.845 0.838 0.713 1e-136
75860382371 unknown [Pisum sativum] 0.847 0.840 0.706 1e-135
75860380371 unknown [Pisum sativum] 0.847 0.840 0.706 1e-135
356543892375 PREDICTED: uncharacterized protein LOC10 0.872 0.856 0.671 1e-132
356549862369 PREDICTED: uncharacterized protein LOC10 0.836 0.834 0.688 1e-132
18406003367 protein trichome birefringence-like 39 [ 0.894 0.896 0.640 1e-131
>gi|225446561|ref|XP_002279857.1| PREDICTED: uncharacterized protein LOC100255693 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/357 (66%), Positives = 282/357 (78%), Gaps = 26/357 (7%)

Query: 27  HSAKADTFTNNINATTTATENGNDFVPERKSLGGGKCNIFQGKWVYDASYPLY--SHCPF 84
           H  + + F+N   A TT      +          G+CN F+GKWVYD+SYPLY  S CPF
Sbjct: 19  HQTEGENFSN---ANTTRLSRAREL--------AGRCNFFRGKWVYDSSYPLYDSSSCPF 67

Query: 85  VDPEFDCQKYGRPDDIYLKYR----------FNGLYFLEKFRGKKIMFVGDSLSLNQWQS 134
           +DPEFDC KYGRPD  YLKYR          FNGL FLE++RGK+IMFVGDSLS NQWQS
Sbjct: 68  IDPEFDCIKYGRPDKQYLKYRWQPLSCNLPRFNGLDFLERWRGKRIMFVGDSLSFNQWQS 127

Query: 135 LACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIK 194
           L+CMIHS  P  + S++++  LSS+TF+++G++++LYRTTYLVDLVRE  G VL+LDSI+
Sbjct: 128 LSCMIHSSVPNARTSLMKSGPLSSLTFEDYGVKLMLYRTTYLVDLVRENVGRVLKLDSIQ 187

Query: 195 GGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNF 254
            GNAW+GMDMLIFNTWHWWTHTGR+QP+DY++EG KLYKDMNRL+A+YKGLTTWARWVN 
Sbjct: 188 SGNAWKGMDMLIFNTWHWWTHTGRTQPWDYVQEGNKLYKDMNRLIAYYKGLTTWARWVNI 247

Query: 255 NVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSR 314
           NVDP+KTKVFFQGISPTHYEG+DWN+PS+SC G+ +PYFG  YPAG PM  VV+ KV SR
Sbjct: 248 NVDPSKTKVFFQGISPTHYEGKDWNQPSRSCDGEMQPYFGASYPAGIPMAAVVVNKVLSR 307

Query: 315 LRKPVYLLDITRLSQYRKDAHPSEYGGHS---DDCSHWCLPGLPDTWNQLMYAALFS 368
           ++KPVYLLD+T LSQYR DAHPS+Y G      DCSHWCLPGLPDTWNQL+YAAL S
Sbjct: 308 IKKPVYLLDVTTLSQYRIDAHPSDYSGEHGGITDCSHWCLPGLPDTWNQLLYAALVS 364




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135837|ref|XP_002327316.1| predicted protein [Populus trichocarpa] gi|222835686|gb|EEE74121.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224145260|ref|XP_002325581.1| predicted protein [Populus trichocarpa] gi|222862456|gb|EEE99962.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255568301|ref|XP_002525125.1| conserved hypothetical protein [Ricinus communis] gi|223535584|gb|EEF37252.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449463298|ref|XP_004149371.1| PREDICTED: uncharacterized protein LOC101205461 [Cucumis sativus] gi|449509085|ref|XP_004163488.1| PREDICTED: uncharacterized protein LOC101226154 [Cucumis sativus] Back     alignment and taxonomy information
>gi|75860382|gb|ABA29158.1| unknown [Pisum sativum] Back     alignment and taxonomy information
>gi|75860380|gb|ABA29157.1| unknown [Pisum sativum] Back     alignment and taxonomy information
>gi|356543892|ref|XP_003540392.1| PREDICTED: uncharacterized protein LOC100797993 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356549862|ref|XP_003543309.1| PREDICTED: uncharacterized protein LOC100813837 [Glycine max] Back     alignment and taxonomy information
>gi|18406003|ref|NP_565975.1| protein trichome birefringence-like 39 [Arabidopsis thaliana] gi|4559334|gb|AAD22996.1| expressed protein [Arabidopsis thaliana] gi|14334590|gb|AAK59473.1| unknown protein [Arabidopsis thaliana] gi|17104519|gb|AAL34148.1| unknown protein [Arabidopsis thaliana] gi|330255046|gb|AEC10140.1| protein trichome birefringence-like 39 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2041574367 TBL39 "AT2G42570" [Arabidopsis 0.853 0.855 0.658 1.4e-126
TAIR|locus:2055878364 AT2G31110 "AT2G31110" [Arabido 0.845 0.854 0.627 4.9e-117
TAIR|locus:2029959380 TBL38 "AT1G29050" [Arabidopsis 0.847 0.821 0.616 1.8e-112
TAIR|locus:2055425385 TBL37 "AT2G34070" [Arabidopsis 0.842 0.805 0.599 1.3e-107
TAIR|locus:2099402356 TBL41 "TRICHOME BIREFRINGENCE- 0.817 0.845 0.550 2.1e-91
TAIR|locus:2037498359 TBL42 "TRICHOME BIREFRINGENCE- 0.826 0.846 0.507 5.1e-90
TAIR|locus:2178813402 PMR5 "AT5G58600" [Arabidopsis 0.758 0.694 0.478 2.1e-68
TAIR|locus:2045688398 TBL45 "AT2G30010" [Arabidopsis 0.758 0.701 0.432 3e-62
TAIR|locus:2080280379 TBL36 "AT3G54260" [Arabidopsis 0.809 0.786 0.404 4.8e-62
TAIR|locus:2082078487 ESK1 "ESKIMO 1" [Arabidopsis t 0.75 0.566 0.352 2.3e-60
TAIR|locus:2041574 TBL39 "AT2G42570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 216/328 (65%), Positives = 258/328 (78%)

Query:    55 RKSLGGGKCNIFQGKWVYDASYPLYS--HCPFVDPEFDCQKYGRPDDIYLKYR------- 105
             R+ L  G+CN F+G WVYD  YPLY    CPF+DP+F+C+KYGRPD+ YLKYR       
Sbjct:    39 RRELASGRCNWFRGNWVYDVKYPLYDPYKCPFIDPQFNCKKYGRPDNAYLKYRWQPSSCS 98

Query:   106 ---FNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQ 162
                FNGLYFL + RGKKIMFVGDSLS N WQSLAC+IHSW P T+Y+++R   L+S+TF+
Sbjct:    99 LPRFNGLYFLRRMRGKKIMFVGDSLSTNMWQSLACLIHSWVPNTRYTLIRQKGLASLTFE 158

Query:   163 EFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPF 222
             E+G+ +LLYRT +LVDL  E  G VL+LDSIK GN WRGMD+LIFN+WHWWTHT   QP+
Sbjct:   159 EYGVTLLLYRTQFLVDLNVEKVGRVLKLDSIKQGNMWRGMDVLIFNSWHWWTHTEHIQPW 218

Query:   223 DYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPS 282
             DY+ +G +LYKDMNRLVAFYKG+TTWARWVN  VDP+KTKVFF G+SPTHYEG+DW EP 
Sbjct:   219 DYMEDGNRLYKDMNRLVAFYKGMTTWARWVNAYVDPSKTKVFFNGVSPTHYEGKDWGEPM 278

Query:   283 KSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGH 342
              SC  QT+P++G KYP GTPM WV+L KV  RL+KPV+ LDIT LSQ RKDAHPS + G+
Sbjct:   279 NSCRSQTQPFYGRKYPGGTPMAWVILNKVMRRLKKPVHWLDITGLSQLRKDAHPSAFSGN 338

Query:   343 --SDDCSHWCLPGLPDTWNQLMYAALFS 368
                +DCSHWCLPGLPDTWN L Y+ LFS
Sbjct:   339 HPGNDCSHWCLPGLPDTWNLLFYSTLFS 366




GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2055878 AT2G31110 "AT2G31110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029959 TBL38 "AT1G29050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055425 TBL37 "AT2G34070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099402 TBL41 "TRICHOME BIREFRINGENCE-LIKE 41" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045688 TBL45 "AT2G30010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082078 ESK1 "ESKIMO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00018708001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (364 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 1e-127
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 1e-102
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 1e-19
>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
 Score =  371 bits (954), Expect = e-127
 Identities = 171/334 (51%), Positives = 206/334 (61%), Gaps = 29/334 (8%)

Query: 63  CNIFQGKWVYDASYPLY--SHCP-FVDPEFDCQKYGRPDDIYLKYR----------FNGL 109
           C +F G WV D SYPLY  S CP  +DPEF+CQ YGRPD  YLKYR          FNGL
Sbjct: 53  CALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGL 112

Query: 110 YFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQIL 169
            FL K +GK +MFVGDSL  NQW+SL C+I S  P T+  + R   LS+  F ++G+ I 
Sbjct: 113 EFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSIS 172

Query: 170 LYRTTYLVDLVREPAGTVLRLDSIKG-GNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREG 228
            Y+  YLVD+       VL+L+ I G  NAWR  D+LIFNT HWW+H G  Q +DYI  G
Sbjct: 173 FYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESG 232

Query: 229 RKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWN----EPSKS 284
              Y+DM+RLVA  K L TWA WV+ NVD ++T+VFFQ ISPTHY   +W+      +K+
Sbjct: 233 GTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKN 292

Query: 285 CSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGG--- 341
           C G+T P  G  YP   P    V+ +V   +  P YLLDIT LS+ RKD HPS Y G   
Sbjct: 293 CYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLS 352

Query: 342 --------HSDDCSHWCLPGLPDTWNQLMYAALF 367
                    S DCSHWCLPGLPDTWNQL Y ALF
Sbjct: 353 PSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386


Length = 387

>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.84
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 98.32
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=2.8e-113  Score=850.32  Aligned_cols=312  Identities=55%  Similarity=1.055  Sum_probs=290.7

Q ss_pred             CCCCCCCcCcccceeeCCCCCCC--CCCC-CCCCCccccccCCCCccceee----------ccCHHHHHHHhcCCcEEEE
Q 017668           57 SLGGGKCNIFQGKWVYDASYPLY--SHCP-FVDPEFDCQKYGRPDDIYLKY----------RFNGLYFLEKFRGKKIMFV  123 (368)
Q Consensus        57 ~~~~~~CD~~~G~WV~D~~~PlY--~~Cp-~i~~~~nC~~nGRpD~~Yl~W----------rFd~~~FLe~lRgKri~FV  123 (368)
                      ....++||+|+|+||+|+++|+|  ++|| ||+++|||++|||||++|++|          ||||.+|||+|||||||||
T Consensus        47 ~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FV  126 (387)
T PLN02629         47 QANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFV  126 (387)
T ss_pred             CCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEe
Confidence            34567899999999999999999  7999 999999999999999999998          9999999999999999999


Q ss_pred             ecchhhhhHHHHHhhhccccCCcceEEEecceeEEEEecccCeEEEEEeeccceecccCCCCceEEeccccCC-CCCCcc
Q 017668          124 GDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGG-NAWRGM  202 (368)
Q Consensus       124 GDSl~RNq~eSL~ClL~~~~~~~~~~~~~~~~~~~~~f~~yN~Tv~~ywsPfLV~~~~~~~~~~l~lD~~~~~-~~w~~~  202 (368)
                      ||||+|||||||+|||++++|+.++.+.++++..+|+|++||+||+||||||||+.++.+..++|+||++++. +.|+++
T Consensus       127 GDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w~~~  206 (387)
T PLN02629        127 GDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDA  206 (387)
T ss_pred             ccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEEecCcchhhhhhccC
Confidence            9999999999999999999988776677778889999999999999999999999987777789999999876 889999


Q ss_pred             cEEEEcccccccccCCCCCceeeccCceeeccccHHHHHHHHHHHHHHHHHhccCCCCceEEEeeccCCCCCCCCCCCC-
Q 017668          203 DMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEP-  281 (368)
Q Consensus       203 DvlV~NtG~Ww~~~~~~~~~~y~~~g~~~~~~~~~~~ay~~al~t~~~~v~~~~~~~~~~vffRt~sP~Hf~~g~W~~~-  281 (368)
                      |||||||||||.+++..++|+|++.|+.++++|++.+||++||+||++||++++++.+++|||||+||+||+||+||.. 
T Consensus       207 DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg  286 (387)
T PLN02629        207 DVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGA  286 (387)
T ss_pred             CEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCC
Confidence            9999999999999998889999999999999999999999999999999999999999999999999999999999942 


Q ss_pred             ---CCCCCCCCccCcCCCCCCCCCchHHHHHHHHHhcCCceEEeeccccccccccCCCCCCCC-----------CCCCcc
Q 017668          282 ---SKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGG-----------HSDDCS  347 (368)
Q Consensus       282 ---gG~C~~~T~P~~~~~~~~~~~~~~~~v~~~~~~~~~~v~lLdIT~ls~~R~DgHps~y~g-----------~~~DC~  347 (368)
                         +|+|+++|+|+.++++.++...+++++++++++++.+|++||||+||++|||||||+|++           .++||+
T Consensus       287 ~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~  366 (387)
T PLN02629        287 STTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSADCS  366 (387)
T ss_pred             CCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCCCcc
Confidence               257999999999877777767778899999999999999999999999999999999963           368999


Q ss_pred             cccCCCchhHHHHHHHHHHhC
Q 017668          348 HWCLPGLPDTWNQLMYAALFS  368 (368)
Q Consensus       348 HWCLPGv~DtWNelL~~~L~~  368 (368)
                      ||||||||||||||||++|+.
T Consensus       367 HWCLPGvpDTWNelL~a~L~~  387 (387)
T PLN02629        367 HWCLPGLPDTWNQLFYTALFF  387 (387)
T ss_pred             cccCCCCCccHHHHHHHHHhC
Confidence            999999999999999999973



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 94.33
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=94.33  E-value=0.02  Score=49.82  Aligned_cols=120  Identities=12%  Similarity=0.091  Sum_probs=65.9

Q ss_pred             cccEEEEcccccccccCCCCCceeeccCceeeccccHHHHHHHHHHHHHHHHHhccCCCCceEEEeeccCCCCCCCCCCC
Q 017668          201 GMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNE  280 (368)
Q Consensus       201 ~~DvlV~NtG~Ww~~~~~~~~~~y~~~g~~~~~~~~~~~ay~~al~t~~~~v~~~~~~~~~~vffRt~sP~Hf~~g~W~~  280 (368)
                      ..|+|||+.|..=.  .                 . ..+.|+..|+++++-+.+..  ...++++-+..|....  .+. 
T Consensus        74 ~pd~Vvi~~G~ND~--~-----------------~-~~~~~~~~l~~ii~~l~~~~--p~~~ii~~~~~P~~~~--~~~-  128 (200)
T 4h08_A           74 KFDVIHFNNGLHGF--D-----------------Y-TEEEYDKSFPKLIKIIRKYA--PKAKLIWANTTPVRTG--EGM-  128 (200)
T ss_dssp             CCSEEEECCCSSCT--T-----------------S-CHHHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCEES--GGG-
T ss_pred             CCCeEEEEeeeCCC--C-----------------C-CHHHHHHHHHHHHHHHhhhC--CCccEEEeccCCCccc--ccc-
Confidence            46999999997410  0                 0 12568888888888775432  4678889888886532  111 


Q ss_pred             CCCCCCCCCccCcCCCCCCCCCchHHHHHHHHHhcCCceEEeeccccccccccCCCCCCCCCCCCcccccCCCchhHHHH
Q 017668          281 PSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQ  360 (368)
Q Consensus       281 ~gG~C~~~T~P~~~~~~~~~~~~~~~~v~~~~~~~~~~v~lLdIT~ls~~R~DgHps~y~g~~~DC~HWCLPGv~DtWNe  360 (368)
                         ....+..        ......+++++++.++  ..+.++|+...+.-+++.    +  ...|-+|.---| -..|-+
T Consensus       129 ---~~~~~~~--------~~~~~~n~~~~~~a~~--~~v~~iD~~~~~~~~~~~----~--~~~Dg~Hpn~~G-y~~~A~  188 (200)
T 4h08_A          129 ---KEFAPIT--------ERLNVRNQIALKHINR--ASIEVNDLWKVVIDHPEY----Y--AGGDGTHPIDAG-YSALAN  188 (200)
T ss_dssp             ---CEECTHH--------HHHHHHHHHHHHHHHH--TTCEEECHHHHHTTCGGG----T--TTSCSSSCCHHH-HHHHHH
T ss_pred             ---cccchhH--------HHHHHHHHHHHHHhhh--cceEEEecHHhHhcCHHH----h--cCCCCCCCCHHH-HHHHHH
Confidence               0100000        0001124566666655  358899998766543332    2  235888865444 234444


Q ss_pred             HHHHH
Q 017668          361 LMYAA  365 (368)
Q Consensus       361 lL~~~  365 (368)
                      .+...
T Consensus       189 ~i~~~  193 (200)
T 4h08_A          189 QVIKV  193 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 87.82
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 86.29
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=87.82  E-value=0.1  Score=42.61  Aligned_cols=16  Identities=31%  Similarity=0.482  Sum_probs=13.3

Q ss_pred             hcCCcEEEEecchhhh
Q 017668          115 FRGKKIMFVGDSLSLN  130 (368)
Q Consensus       115 lRgKri~FVGDSl~RN  130 (368)
                      +..|||+|+|||++-+
T Consensus         2 ~~~kri~~iGDSit~g   17 (207)
T d3dc7a1           2 VSFKRPAWLGDSITAN   17 (207)
T ss_dssp             BCCSSEEEEESTTTST
T ss_pred             CCCCEEEEEehHhhcC
Confidence            4579999999999843



>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure