Citrus Sinensis ID: 017668
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 368 | ||||||
| 225446561 | 364 | PREDICTED: uncharacterized protein LOC10 | 0.899 | 0.909 | 0.661 | 1e-139 | |
| 224135837 | 368 | predicted protein [Populus trichocarpa] | 0.959 | 0.959 | 0.663 | 1e-139 | |
| 224145260 | 317 | predicted protein [Populus trichocarpa] | 0.815 | 0.946 | 0.750 | 1e-139 | |
| 255568301 | 350 | conserved hypothetical protein [Ricinus | 0.910 | 0.957 | 0.662 | 1e-139 | |
| 449463298 | 371 | PREDICTED: uncharacterized protein LOC10 | 0.845 | 0.838 | 0.713 | 1e-136 | |
| 75860382 | 371 | unknown [Pisum sativum] | 0.847 | 0.840 | 0.706 | 1e-135 | |
| 75860380 | 371 | unknown [Pisum sativum] | 0.847 | 0.840 | 0.706 | 1e-135 | |
| 356543892 | 375 | PREDICTED: uncharacterized protein LOC10 | 0.872 | 0.856 | 0.671 | 1e-132 | |
| 356549862 | 369 | PREDICTED: uncharacterized protein LOC10 | 0.836 | 0.834 | 0.688 | 1e-132 | |
| 18406003 | 367 | protein trichome birefringence-like 39 [ | 0.894 | 0.896 | 0.640 | 1e-131 |
| >gi|225446561|ref|XP_002279857.1| PREDICTED: uncharacterized protein LOC100255693 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/357 (66%), Positives = 282/357 (78%), Gaps = 26/357 (7%)
Query: 27 HSAKADTFTNNINATTTATENGNDFVPERKSLGGGKCNIFQGKWVYDASYPLY--SHCPF 84
H + + F+N A TT + G+CN F+GKWVYD+SYPLY S CPF
Sbjct: 19 HQTEGENFSN---ANTTRLSRAREL--------AGRCNFFRGKWVYDSSYPLYDSSSCPF 67
Query: 85 VDPEFDCQKYGRPDDIYLKYR----------FNGLYFLEKFRGKKIMFVGDSLSLNQWQS 134
+DPEFDC KYGRPD YLKYR FNGL FLE++RGK+IMFVGDSLS NQWQS
Sbjct: 68 IDPEFDCIKYGRPDKQYLKYRWQPLSCNLPRFNGLDFLERWRGKRIMFVGDSLSFNQWQS 127
Query: 135 LACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIK 194
L+CMIHS P + S++++ LSS+TF+++G++++LYRTTYLVDLVRE G VL+LDSI+
Sbjct: 128 LSCMIHSSVPNARTSLMKSGPLSSLTFEDYGVKLMLYRTTYLVDLVRENVGRVLKLDSIQ 187
Query: 195 GGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNF 254
GNAW+GMDMLIFNTWHWWTHTGR+QP+DY++EG KLYKDMNRL+A+YKGLTTWARWVN
Sbjct: 188 SGNAWKGMDMLIFNTWHWWTHTGRTQPWDYVQEGNKLYKDMNRLIAYYKGLTTWARWVNI 247
Query: 255 NVDPTKTKVFFQGISPTHYEGRDWNEPSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSR 314
NVDP+KTKVFFQGISPTHYEG+DWN+PS+SC G+ +PYFG YPAG PM VV+ KV SR
Sbjct: 248 NVDPSKTKVFFQGISPTHYEGKDWNQPSRSCDGEMQPYFGASYPAGIPMAAVVVNKVLSR 307
Query: 315 LRKPVYLLDITRLSQYRKDAHPSEYGGHS---DDCSHWCLPGLPDTWNQLMYAALFS 368
++KPVYLLD+T LSQYR DAHPS+Y G DCSHWCLPGLPDTWNQL+YAAL S
Sbjct: 308 IKKPVYLLDVTTLSQYRIDAHPSDYSGEHGGITDCSHWCLPGLPDTWNQLLYAALVS 364
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135837|ref|XP_002327316.1| predicted protein [Populus trichocarpa] gi|222835686|gb|EEE74121.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224145260|ref|XP_002325581.1| predicted protein [Populus trichocarpa] gi|222862456|gb|EEE99962.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255568301|ref|XP_002525125.1| conserved hypothetical protein [Ricinus communis] gi|223535584|gb|EEF37252.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449463298|ref|XP_004149371.1| PREDICTED: uncharacterized protein LOC101205461 [Cucumis sativus] gi|449509085|ref|XP_004163488.1| PREDICTED: uncharacterized protein LOC101226154 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|75860382|gb|ABA29158.1| unknown [Pisum sativum] | Back alignment and taxonomy information |
|---|
| >gi|75860380|gb|ABA29157.1| unknown [Pisum sativum] | Back alignment and taxonomy information |
|---|
| >gi|356543892|ref|XP_003540392.1| PREDICTED: uncharacterized protein LOC100797993 isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356549862|ref|XP_003543309.1| PREDICTED: uncharacterized protein LOC100813837 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|18406003|ref|NP_565975.1| protein trichome birefringence-like 39 [Arabidopsis thaliana] gi|4559334|gb|AAD22996.1| expressed protein [Arabidopsis thaliana] gi|14334590|gb|AAK59473.1| unknown protein [Arabidopsis thaliana] gi|17104519|gb|AAL34148.1| unknown protein [Arabidopsis thaliana] gi|330255046|gb|AEC10140.1| protein trichome birefringence-like 39 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 368 | ||||||
| TAIR|locus:2041574 | 367 | TBL39 "AT2G42570" [Arabidopsis | 0.853 | 0.855 | 0.658 | 1.4e-126 | |
| TAIR|locus:2055878 | 364 | AT2G31110 "AT2G31110" [Arabido | 0.845 | 0.854 | 0.627 | 4.9e-117 | |
| TAIR|locus:2029959 | 380 | TBL38 "AT1G29050" [Arabidopsis | 0.847 | 0.821 | 0.616 | 1.8e-112 | |
| TAIR|locus:2055425 | 385 | TBL37 "AT2G34070" [Arabidopsis | 0.842 | 0.805 | 0.599 | 1.3e-107 | |
| TAIR|locus:2099402 | 356 | TBL41 "TRICHOME BIREFRINGENCE- | 0.817 | 0.845 | 0.550 | 2.1e-91 | |
| TAIR|locus:2037498 | 359 | TBL42 "TRICHOME BIREFRINGENCE- | 0.826 | 0.846 | 0.507 | 5.1e-90 | |
| TAIR|locus:2178813 | 402 | PMR5 "AT5G58600" [Arabidopsis | 0.758 | 0.694 | 0.478 | 2.1e-68 | |
| TAIR|locus:2045688 | 398 | TBL45 "AT2G30010" [Arabidopsis | 0.758 | 0.701 | 0.432 | 3e-62 | |
| TAIR|locus:2080280 | 379 | TBL36 "AT3G54260" [Arabidopsis | 0.809 | 0.786 | 0.404 | 4.8e-62 | |
| TAIR|locus:2082078 | 487 | ESK1 "ESKIMO 1" [Arabidopsis t | 0.75 | 0.566 | 0.352 | 2.3e-60 |
| TAIR|locus:2041574 TBL39 "AT2G42570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 216/328 (65%), Positives = 258/328 (78%)
Query: 55 RKSLGGGKCNIFQGKWVYDASYPLYS--HCPFVDPEFDCQKYGRPDDIYLKYR------- 105
R+ L G+CN F+G WVYD YPLY CPF+DP+F+C+KYGRPD+ YLKYR
Sbjct: 39 RRELASGRCNWFRGNWVYDVKYPLYDPYKCPFIDPQFNCKKYGRPDNAYLKYRWQPSSCS 98
Query: 106 ---FNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQ 162
FNGLYFL + RGKKIMFVGDSLS N WQSLAC+IHSW P T+Y+++R L+S+TF+
Sbjct: 99 LPRFNGLYFLRRMRGKKIMFVGDSLSTNMWQSLACLIHSWVPNTRYTLIRQKGLASLTFE 158
Query: 163 EFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPF 222
E+G+ +LLYRT +LVDL E G VL+LDSIK GN WRGMD+LIFN+WHWWTHT QP+
Sbjct: 159 EYGVTLLLYRTQFLVDLNVEKVGRVLKLDSIKQGNMWRGMDVLIFNSWHWWTHTEHIQPW 218
Query: 223 DYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEPS 282
DY+ +G +LYKDMNRLVAFYKG+TTWARWVN VDP+KTKVFF G+SPTHYEG+DW EP
Sbjct: 219 DYMEDGNRLYKDMNRLVAFYKGMTTWARWVNAYVDPSKTKVFFNGVSPTHYEGKDWGEPM 278
Query: 283 KSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGH 342
SC QT+P++G KYP GTPM WV+L KV RL+KPV+ LDIT LSQ RKDAHPS + G+
Sbjct: 279 NSCRSQTQPFYGRKYPGGTPMAWVILNKVMRRLKKPVHWLDITGLSQLRKDAHPSAFSGN 338
Query: 343 --SDDCSHWCLPGLPDTWNQLMYAALFS 368
+DCSHWCLPGLPDTWN L Y+ LFS
Sbjct: 339 HPGNDCSHWCLPGLPDTWNLLFYSTLFS 366
|
|
| TAIR|locus:2055878 AT2G31110 "AT2G31110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029959 TBL38 "AT1G29050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2055425 TBL37 "AT2G34070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2099402 TBL41 "TRICHOME BIREFRINGENCE-LIKE 41" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2045688 TBL45 "AT2G30010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082078 ESK1 "ESKIMO 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00018708001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (364 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 368 | |||
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 1e-127 | |
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 1e-102 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 1e-19 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Score = 371 bits (954), Expect = e-127
Identities = 171/334 (51%), Positives = 206/334 (61%), Gaps = 29/334 (8%)
Query: 63 CNIFQGKWVYDASYPLY--SHCP-FVDPEFDCQKYGRPDDIYLKYR----------FNGL 109
C +F G WV D SYPLY S CP +DPEF+CQ YGRPD YLKYR FNGL
Sbjct: 53 CALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGL 112
Query: 110 YFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQIL 169
FL K +GK +MFVGDSL NQW+SL C+I S P T+ + R LS+ F ++G+ I
Sbjct: 113 EFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSIS 172
Query: 170 LYRTTYLVDLVREPAGTVLRLDSIKG-GNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREG 228
Y+ YLVD+ VL+L+ I G NAWR D+LIFNT HWW+H G Q +DYI G
Sbjct: 173 FYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESG 232
Query: 229 RKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWN----EPSKS 284
Y+DM+RLVA K L TWA WV+ NVD ++T+VFFQ ISPTHY +W+ +K+
Sbjct: 233 GTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGASTTTKN 292
Query: 285 CSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGG--- 341
C G+T P G YP P V+ +V + P YLLDIT LS+ RKD HPS Y G
Sbjct: 293 CYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLS 352
Query: 342 --------HSDDCSHWCLPGLPDTWNQLMYAALF 367
S DCSHWCLPGLPDTWNQL Y ALF
Sbjct: 353 PSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386
|
Length = 387 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 368 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 100.0 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 99.84 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 98.32 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-113 Score=850.32 Aligned_cols=312 Identities=55% Similarity=1.055 Sum_probs=290.7
Q ss_pred CCCCCCCcCcccceeeCCCCCCC--CCCC-CCCCCccccccCCCCccceee----------ccCHHHHHHHhcCCcEEEE
Q 017668 57 SLGGGKCNIFQGKWVYDASYPLY--SHCP-FVDPEFDCQKYGRPDDIYLKY----------RFNGLYFLEKFRGKKIMFV 123 (368)
Q Consensus 57 ~~~~~~CD~~~G~WV~D~~~PlY--~~Cp-~i~~~~nC~~nGRpD~~Yl~W----------rFd~~~FLe~lRgKri~FV 123 (368)
....++||+|+|+||+|+++|+| ++|| ||+++|||++|||||++|++| ||||.+|||+|||||||||
T Consensus 47 ~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FV 126 (387)
T PLN02629 47 QANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFV 126 (387)
T ss_pred CCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEe
Confidence 34567899999999999999999 7999 999999999999999999998 9999999999999999999
Q ss_pred ecchhhhhHHHHHhhhccccCCcceEEEecceeEEEEecccCeEEEEEeeccceecccCCCCceEEeccccCC-CCCCcc
Q 017668 124 GDSLSLNQWQSLACMIHSWAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVREPAGTVLRLDSIKGG-NAWRGM 202 (368)
Q Consensus 124 GDSl~RNq~eSL~ClL~~~~~~~~~~~~~~~~~~~~~f~~yN~Tv~~ywsPfLV~~~~~~~~~~l~lD~~~~~-~~w~~~ 202 (368)
||||+|||||||+|||++++|+.++.+.++++..+|+|++||+||+||||||||+.++.+..++|+||++++. +.|+++
T Consensus 127 GDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w~~~ 206 (387)
T PLN02629 127 GDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDA 206 (387)
T ss_pred ccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCCCceeEEecCcchhhhhhccC
Confidence 9999999999999999999988776677778889999999999999999999999987777789999999876 889999
Q ss_pred cEEEEcccccccccCCCCCceeeccCceeeccccHHHHHHHHHHHHHHHHHhccCCCCceEEEeeccCCCCCCCCCCCC-
Q 017668 203 DMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNEP- 281 (368)
Q Consensus 203 DvlV~NtG~Ww~~~~~~~~~~y~~~g~~~~~~~~~~~ay~~al~t~~~~v~~~~~~~~~~vffRt~sP~Hf~~g~W~~~- 281 (368)
|||||||||||.+++..++|+|++.|+.++++|++.+||++||+||++||++++++.+++|||||+||+||+||+||..
T Consensus 207 DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hfe~g~Wn~gg 286 (387)
T PLN02629 207 DVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHYNPSEWSAGA 286 (387)
T ss_pred CEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccccCCCcCCCC
Confidence 9999999999999998889999999999999999999999999999999999999999999999999999999999942
Q ss_pred ---CCCCCCCCccCcCCCCCCCCCchHHHHHHHHHhcCCceEEeeccccccccccCCCCCCCC-----------CCCCcc
Q 017668 282 ---SKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGG-----------HSDDCS 347 (368)
Q Consensus 282 ---gG~C~~~T~P~~~~~~~~~~~~~~~~v~~~~~~~~~~v~lLdIT~ls~~R~DgHps~y~g-----------~~~DC~ 347 (368)
+|+|+++|+|+.++++.++...+++++++++++++.+|++||||+||++|||||||+|++ .++||+
T Consensus 287 ~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~~~~~p~~~~DC~ 366 (387)
T PLN02629 287 STTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLSPSQRANPDRSADCS 366 (387)
T ss_pred CCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCcccccCCCchhhccCCCCCCCcc
Confidence 257999999999877777767778899999999999999999999999999999999963 368999
Q ss_pred cccCCCchhHHHHHHHHHHhC
Q 017668 348 HWCLPGLPDTWNQLMYAALFS 368 (368)
Q Consensus 348 HWCLPGv~DtWNelL~~~L~~ 368 (368)
||||||||||||||||++|+.
T Consensus 367 HWCLPGvpDTWNelL~a~L~~ 387 (387)
T PLN02629 367 HWCLPGLPDTWNQLFYTALFF 387 (387)
T ss_pred cccCCCCCccHHHHHHHHHhC
Confidence 999999999999999999973
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 368 | |||
| 4h08_A | 200 | Putative hydrolase; GDSL-like lipase/acylhydrolase | 94.33 |
| >4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=49.82 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=65.9
Q ss_pred cccEEEEcccccccccCCCCCceeeccCceeeccccHHHHHHHHHHHHHHHHHhccCCCCceEEEeeccCCCCCCCCCCC
Q 017668 201 GMDMLIFNTWHWWTHTGRSQPFDYIREGRKLYKDMNRLVAFYKGLTTWARWVNFNVDPTKTKVFFQGISPTHYEGRDWNE 280 (368)
Q Consensus 201 ~~DvlV~NtG~Ww~~~~~~~~~~y~~~g~~~~~~~~~~~ay~~al~t~~~~v~~~~~~~~~~vffRt~sP~Hf~~g~W~~ 280 (368)
..|+|||+.|..=. . . ..+.|+..|+++++-+.+.. ...++++-+..|.... .+.
T Consensus 74 ~pd~Vvi~~G~ND~--~-----------------~-~~~~~~~~l~~ii~~l~~~~--p~~~ii~~~~~P~~~~--~~~- 128 (200)
T 4h08_A 74 KFDVIHFNNGLHGF--D-----------------Y-TEEEYDKSFPKLIKIIRKYA--PKAKLIWANTTPVRTG--EGM- 128 (200)
T ss_dssp CCSEEEECCCSSCT--T-----------------S-CHHHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCEES--GGG-
T ss_pred CCCeEEEEeeeCCC--C-----------------C-CHHHHHHHHHHHHHHHhhhC--CCccEEEeccCCCccc--ccc-
Confidence 46999999997410 0 0 12568888888888775432 4678889888886532 111
Q ss_pred CCCCCCCCCccCcCCCCCCCCCchHHHHHHHHHhcCCceEEeeccccccccccCCCCCCCCCCCCcccccCCCchhHHHH
Q 017668 281 PSKSCSGQTKPYFGYKYPAGTPMPWVVLQKVFSRLRKPVYLLDITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQ 360 (368)
Q Consensus 281 ~gG~C~~~T~P~~~~~~~~~~~~~~~~v~~~~~~~~~~v~lLdIT~ls~~R~DgHps~y~g~~~DC~HWCLPGv~DtWNe 360 (368)
....+.. ......+++++++.++ ..+.++|+...+.-+++. + ...|-+|.---| -..|-+
T Consensus 129 ---~~~~~~~--------~~~~~~n~~~~~~a~~--~~v~~iD~~~~~~~~~~~----~--~~~Dg~Hpn~~G-y~~~A~ 188 (200)
T 4h08_A 129 ---KEFAPIT--------ERLNVRNQIALKHINR--ASIEVNDLWKVVIDHPEY----Y--AGGDGTHPIDAG-YSALAN 188 (200)
T ss_dssp ---CEECTHH--------HHHHHHHHHHHHHHHH--TTCEEECHHHHHTTCGGG----T--TTSCSSSCCHHH-HHHHHH
T ss_pred ---cccchhH--------HHHHHHHHHHHHHhhh--cceEEEecHHhHhcCHHH----h--cCCCCCCCCHHH-HHHHHH
Confidence 0100000 0001124566666655 358899998766543332 2 235888865444 234444
Q ss_pred HHHHH
Q 017668 361 LMYAA 365 (368)
Q Consensus 361 lL~~~ 365 (368)
.+...
T Consensus 189 ~i~~~ 193 (200)
T 4h08_A 189 QVIKV 193 (200)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 368 | |||
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 87.82 | |
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 86.29 |
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein Lp3323 species: Lactobacillus plantarum [TaxId: 1590]
Probab=87.82 E-value=0.1 Score=42.61 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.3
Q ss_pred hcCCcEEEEecchhhh
Q 017668 115 FRGKKIMFVGDSLSLN 130 (368)
Q Consensus 115 lRgKri~FVGDSl~RN 130 (368)
+..|||+|+|||++-+
T Consensus 2 ~~~kri~~iGDSit~g 17 (207)
T d3dc7a1 2 VSFKRPAWLGDSITAN 17 (207)
T ss_dssp BCCSSEEEEESTTTST
T ss_pred CCCCEEEEEehHhhcC
Confidence 4579999999999843
|
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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