Citrus Sinensis ID: 017677

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MEENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHIQPQCCRAQGVMESQDLQSQQVHT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccccccccccccHHHHccccccccccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHcccEEEccccccccEEEccccccccEEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meennyfdfsfqtqtrpssnsvsvQEESVkrqqepwnfnkptkesdfstenpgvksefapmesfssdmasyqtnvqsnaapqsgnyghynqssaytreqkrsedgynwrkygqkqvkgsenprsyfkctfpdcpmkkkversldGQITEIVYkgshnhpkptstrrssssqsmqhstcansdlsdqsvgplgnthtdsfsmqnesstsfgeddfveqgsptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrwrKYGQkvvkgnpnprsyykctttgcpvrkhverASHDMRAVITTYegkhnhdvpaarfhhhqevkrhiqpqccraqgvmesqdlqsqqvht
Flexible Loop (DISEMBL)
meennyfdfsfqtqtrpssnsVSVQEESvkrqqepwnfnkptkesdfstenpgVKSEFAPMESFSSDMASYQTNVQSNAapqsgnyghynqssaYTREQKRSEDGYNWRKYgqkqvkgsenprsyfKCTFPDCPMKKKVERSLDGQITEIvykgshnhpkptstrrssssqsMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSptsnpigdddenepdakrwkgendiegvigtgsrtvreprivvqttsdidilddgyrWRKYgqkvvkgnpnprsyykctttgcpvrkhveraSHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHIQPQCCRAQGvmesqdlqsqqvht
Low Complexity Region (SEG)
MEENNYFDFSFQTQTRPssnsvsvqeesvKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPtstrrssssqsmqhstCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHIQPQCCRAQGVMESQDLQSQQVHT
Disordered region (IsUnstruct)
****************************************************************************************************************************YFKCTFPDCPM*********GQITEIVY********************************************************************************************EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHIQPQCC******************
Disordered Region (DISOPRED)
******F**************************************************************************************************YNWRKYGQK****SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG*********************VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH****************************************
Disordered Region (DISEMBL)
MEENNYFDFSF**********************EPWNFNKPT**********GVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYG********NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSH*************************DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARF*********IQPQCCRAQG**************
Disordered Region (DISPRO)
*****************************************************************************************NQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN*************************************************************************************************VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHIQPQCCRAQGVMESQDLQSQQVHT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q8S8P5	519	Probable WRKY transcripti	yes	no	0.663	0.470	0.726	1e-93
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.633	0.454	0.567	8e-73
Q9C5T3	309	Probable WRKY transcripti	no	no	0.494	0.588	0.588	2e-68
Q9XI90	514	Probable WRKY transcripti	no	no	0.660	0.472	0.526	3e-68
Q93WV0	557	Probable WRKY transcripti	no	no	0.660	0.436	0.516	2e-67
Q9FG77	687	Probable WRKY transcripti	no	no	0.630	0.337	0.498	2e-65
O22921	393	Probable WRKY transcripti	no	no	0.790	0.740	0.463	1e-64
O65590	568	Probable WRKY transcripti	no	no	0.633	0.410	0.511	4e-61
Q93WU7	423	Probable WRKY transcripti	no	no	0.548	0.477	0.543	2e-57
Q9SI37	487	WRKY transcription factor	no	no	0.722	0.546	0.429	6e-54

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  343 bits (881), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/256 (72%), Positives = 205/256 (80%), Gaps = 12/256 (4%)

Query: 90  NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
           NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct: 170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query: 149 EIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL-------SDQSVGPLGNTHTDSFSM 201
           EIVYKGSHNHPKP STRRSSSS S  HS   N+ L       SDQ         +DSF M
Sbjct: 230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query: 202 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 258
           Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct: 290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
           RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct: 349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query: 319 ITTYEGKHNHDVPAAR 334
           ITTYEGKHNHDVPAAR
Sbjct: 409 ITTYEGKHNHDVPAAR 424

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  274 bits (700), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 138/243 (56%), Positives = 171/243 (70%), Gaps = 10/243 (4%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 247 KPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHE 306

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVE 216
            P   +R +++ S     C +SD+++Q   S   L  +  D  + Q  ++    E    E
Sbjct: 307 LPQ--KRGNNNGS-----CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSE 359

Query: 217 QGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYR 276
           +       +G+  E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYR
Sbjct: 360 EVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYR 419

Query: 277 WRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFH 336
           WRKYGQKVVKGNP PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR  
Sbjct: 420 WRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTS 479

Query: 337 HHQ 339
            HQ
Sbjct: 480 SHQ 482

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  259 bits (662), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/236 (58%), Positives = 155/236 (65%), Gaps = 54/236 (22%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNH 158
           K S+DGYNWRKYGQKQVKGSENPRSYFKCT+P+C  KKKVE SL  GQ+ EIVYKGSHNH
Sbjct: 114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173

Query: 159 PKPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQG 218
           PKP ST+RSSS+    H   +N D                           G+D      
Sbjct: 174 PKPQSTKRSSSTAIAAHQNSSNGD---------------------------GKD------ 200

Query: 219 SPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWR 278
                 IG+D   E +AKRWK E +           V+EPR+VVQTTSDIDILDDGYRWR
Sbjct: 201 ------IGED---ETEAKRWKREEN-----------VKEPRVVVQTTSDIDILDDGYRWR 240

Query: 279 KYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           KYGQKVVKGNPNPRSYYKCT TGC VRKHVERA  D ++VITTYEGKH H +P  R
Sbjct: 241 KYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 139/264 (52%), Positives = 173/264 (65%), Gaps = 21/264 (7%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH 
Sbjct: 226 KPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHE 285

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 219
            P +T+R +   +   +  + ++    S   LG +    F   + + T   + + V Q +
Sbjct: 286 PPQNTKRGNKDNTANINGSSINNNRGSSE--LGASQ---FQTNSSNKTKREQHEAVSQAT 340

Query: 220 PTSNP---------------IGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQ 263
            T +                + + DENEPD KR   E  I E       RTV EPRI+VQ
Sbjct: 341 TTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQ 400

Query: 264 TTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYE 323
           TTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYE
Sbjct: 401 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 460

Query: 324 GKHNHDVPAARFHHHQEVKRHIQP 347
           GKHNHD+PAA+   H      ++P
Sbjct: 461 GKHNHDLPAAKSSSHAAAAAQLRP 484

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/250 (51%), Positives = 171/250 (68%), Gaps = 7/250 (2%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct: 210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query: 162 TSTRRSSSSQSMQHSTC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 217
              RR+S   + Q        +++   ++  G    ++ +  +   E       DD  E 
Sbjct: 270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query: 218 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 277
            +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct: 330 AASNRN-KDEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query: 278 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHH 337
           RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++   
Sbjct: 387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSS 446

Query: 338 HQEVKRHIQP 347
           + E++   +P
Sbjct: 447 NHEIQPRFRP 456

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 139/279 (49%), Positives = 165/279 (59%), Gaps = 47/279 (16%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           +EDGYNWRKYGQK VKGSE PRSY+KCT P+C +KKKVERS +G ITEI+YKG+HNH KP
Sbjct: 272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331

Query: 162 TSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDF------- 214
              RRS                 D +   +   +T      NE++   G   F       
Sbjct: 332 PPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSG 391

Query: 215 ---------VEQGSPT----SNPIGDDDENEPD--------------------------A 235
                     E G P     ++    +DE+E D                          +
Sbjct: 392 SIQAQTGGQYESGDPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESES 451

Query: 236 KRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 295
           KR K E     + G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYY
Sbjct: 452 KRRKLEAFAAEMSGS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYY 510

Query: 296 KCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           KCT  GC VRKHVERASHD+++VITTYEGKHNHDVPAAR
Sbjct: 511 KCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/330 (46%), Positives = 193/330 (58%), Gaps = 39/330 (11%)

Query: 4   NNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPMES 63
           NN+ DF +Q Q++PS+ S ++QE                    +  ++   K E  P E 
Sbjct: 99  NNHSDFPWQLQSQPSNASSALQET-------------------YGVQDHEKKQEMIPNE- 138

Query: 64  FSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPR 123
                 + Q N QS    +      Y  S       + S DGY WRKYGQKQVK SENPR
Sbjct: 139 -----IATQNNNQSFGTERQIKIPAYMVS-------RNSNDGYGWRKYGQKQVKKSENPR 186

Query: 124 SYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANSDL 183
           SYFKCT+PDC  KK VE + DGQITEI+YKG HNHPKP  T+R S S S+  S       
Sbjct: 187 SYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQS-SLPSSVNGRRLF 245

Query: 184 SDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGEND 243
           +  SV  +   H  S      SS SF   D  ++   +     D++E +P+ KR K E +
Sbjct: 246 NPASV--VSEPHDQS----ENSSISFDYSDLEQKSFKSEYGEIDEEEEQPEMKRMKREGE 299

Query: 244 IEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCP 303
            EG+    S+ V+EPR+VVQT SDID+L DG+RWRKYGQKVVKGN NPRSYYKCT  GC 
Sbjct: 300 DEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCG 359

Query: 304 VRKHVERASHDMRAVITTYEGKHNHDVPAA 333
           V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct: 360 VKKQVERSAADERAVLTTYEGRHNHDIPTA 389

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/266 (51%), Positives = 164/266 (61%), Gaps = 33/266 (12%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
           ++DGYNWRKYGQK VKGSE PRSY+KCT P+C  KKKVERS +G I EI+Y G H H KP
Sbjct: 177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKP 236

Query: 162 TSTRRSS-----SSQSMQ-----HSTCANSDLSDQSVGPLG-----NTHTDSFSMQNESS 206
              RRS      + Q MQ     +   A ++ + +   P+       +H+ S  +QN  +
Sbjct: 237 PPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQN-GT 295

Query: 207 TSFG--------------EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGS 252
             FG              EDD     S +    G+ +E+E  +KR K E       G+ +
Sbjct: 296 HQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-T 352

Query: 253 RTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 312
           R  REPR+VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS
Sbjct: 353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERAS 412

Query: 313 HDMRAVITTYEGKHNHDVPAARFHHH 338
            D ++V+TTY GKH H VPAAR   H
Sbjct: 413 DDFKSVLTTYIGKHTHVVPAARNSSH 438

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 153/232 (65%), Gaps = 30/232 (12%)

Query: 100 KRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHP 159
           K ++DGYNWRKYGQK +KG E PRSY+KCT  +CP+KKKVERS DGQIT+I+YKG H+H 
Sbjct: 164 KPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHE 223

Query: 160 KPTSTRRSSSSQSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGS 219
           +P + R      S +             VG  G           ESS    +D    +  
Sbjct: 224 RPQNRRGGGGRDSTE-------------VGGAGQ--------MMESS----DDSGYRKDH 258

Query: 220 PTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRK 279
              +   +DDE+ P +K  +    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRK
Sbjct: 259 DDDDDDDEDDEDLPASKIRR----IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRK 313

Query: 280 YGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVP 331
           YGQKVVKGNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVP
Sbjct: 314 YGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  211 bits (537), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/312 (42%), Positives = 169/312 (54%), Gaps = 46/312 (14%)

Query: 56  SEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQ 115
           SE AP  S SS   S Q+  + N              S + RE K  EDGYNWRKYGQK 
Sbjct: 79  SEKAPKVSESSGALSLQSGSEGN--------------SPFIRE-KVMEDGYNWRKYGQKL 123

Query: 116 VKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTS------------ 163
           VKG+E  RSY++CT P+C  KK++ERS  GQ+ + VY G H+HPKP +            
Sbjct: 124 VKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPLAGAVPINQDKRSD 183

Query: 164 --TRRSSSSQ-----SMQHSTCANS-DL------SDQSVGPLGNTHTDSFSMQNESSTSF 209
             T  S   Q     S+ +  C  S D+      S  SV  L  T           S   
Sbjct: 184 VFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHGGLHVSVIP 243

Query: 210 GEDDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTS 266
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +
Sbjct: 244 PADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQT 301

Query: 267 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKH 326
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH
Sbjct: 302 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKH 361

Query: 327 NHDVPAARFHHH 338
           +HD+P  R   H
Sbjct: 362 DHDMPPGRVVTH 373

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
409923417	587	WRKY transcription factor 17 [Dimocarpus	0.894	0.560	0.825	1e-159
224140533	534	predicted protein [Populus trichocarpa]	0.877	0.604	0.662	1e-118
183979108	603	DNA-binding protein [Vitis thunbergii]	0.932	0.568	0.632	1e-117
225434421	603	PREDICTED: probable WRKY transcription f	0.932	0.568	0.632	1e-117
259121399	579	WRKY transcription factor 17 [(Populus t	0.877	0.557	0.656	1e-117
356568170	540	PREDICTED: probable WRKY transcription f	0.891	0.607	0.646	1e-116
302399143	520	WRKY domain class transcription factor [	0.853	0.603	0.659	1e-115
255571505	558	transcription factor, putative [Ricinus	0.815	0.537	0.642	1e-114
5917653	514	zinc-finger type transcription factor WR	0.877	0.628	0.627	1e-112
356532213	543	PREDICTED: probable WRKY transcription f	0.891	0.604	0.631	1e-112

>gi|409923417|gb|AEO31478.2| WRKY transcription factor 17 [Dimocarpus longan]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/333 (82%), Positives = 297/333 (89%), Gaps = 4/333 (1%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           EEN++FDFSFQTQ RPSS  VSV EES KRQQE WNFNKP+K+ DFS E  G+KSEFAP 
Sbjct: 146 EENSFFDFSFQTQPRPSSTIVSV-EESTKRQQESWNFNKPSKQPDFSVEKSGMKSEFAPT 204

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           +SFSS+MAS+Q+N+QSN APQSG Y HY+QS+ YTREQKR+EDGYNWRKYGQKQVKGSEN
Sbjct: 205 QSFSSEMASFQSNMQSNTAPQSG-YSHYSQSTQYTREQKRAEDGYNWRKYGQKQVKGSEN 263

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCANS 181
           PRSY+KCT+PDCP KKKVERSLDGQITEIVYKGSHNHPKP STRRSSS  SMQ STCANS
Sbjct: 264 PRSYYKCTYPDCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSS-HSMQPSTCANS 322

Query: 182 DLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGE 241
           ++SDQSVG L N   +SFSMQ +SS SFGED + +QGSPTSNP  DDDENEP+AKRWKGE
Sbjct: 323 EISDQSVGALANAQNESFSMQGDSSASFGEDSY-DQGSPTSNPGADDDENEPEAKRWKGE 381

Query: 242 NDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTG 301
           NDIEG IGTGSR VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT G
Sbjct: 382 NDIEGAIGTGSRXVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIG 441

Query: 302 CPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           CPVRKHVE ASHD RAVITTYEGKHNHDVPAAR
Sbjct: 442 CPVRKHVEXASHDTRAVITTYEGKHNHDVPAAR 474

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140533|ref|XP_002323637.1| predicted protein [Populus trichocarpa] gi|222868267|gb|EEF05398.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/344 (66%), Positives = 270/344 (78%), Gaps = 21/344 (6%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVQEESVKRQQEPWNFNKPTKESDFST-E 50
           EE NY DFSF TQTRP +          NSV+V E+S+KR+QE WNF++  K++DFS+ +
Sbjct: 94  EEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTV-EKSLKRKQEEWNFDQ-LKQTDFSSDQ 151

Query: 51  NPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRK 110
             GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE KRS+DGYNWRK
Sbjct: 152 KTGVKSEFAPEQSFSSELVPLQANMQSVNTAAQPSFNQYNQSAHYMRENKRSDDGYNWRK 211

Query: 111 YGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSS 170
           YGQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSS
Sbjct: 212 YGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSS 270

Query: 171 QSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDE 230
           Q +Q S  A+S++SDQS+ P+     +S  MQ +SS S GED+F +  S  S    +D+ 
Sbjct: 271 QLVQPSGGASSEISDQSIAPI-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNA 323

Query: 231 NEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 290
           NEPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct: 324 NEPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 383

Query: 291 PRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           PRSYYKCT+ GCPVRKHVERAS D+RAVITTYEGKHNHDVPAAR
Sbjct: 384 PRSYYKCTSVGCPVRKHVERASQDLRAVITTYEGKHNHDVPAAR 427

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979108|emb|CAP08303.1| DNA-binding protein [Vitis thunbergii]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/359 (63%), Positives = 266/359 (74%), Gaps = 16/359 (4%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV---------QEESVKRQQEPWNFNKPTKESDFSTENP 52
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 53  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 109
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 110 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSS 169
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS 
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 170 SQS--MQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 227
           S S  +Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 228 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 287 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHI 345
           GNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAAR      V R +
Sbjct: 442 GNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPL 500

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434421|ref|XP_002272040.1| PREDICTED: probable WRKY transcription factor 33-like [Vitis vinifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/359 (63%), Positives = 266/359 (74%), Gaps = 16/359 (4%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSV---------QEESVKRQQEPWNFNKPTKESDFSTENP 52
           E+ NY DFSFQ Q RPS+ S S+          E++++ QQ  W+F +PTK+  FS+E  
Sbjct: 143 EDKNYLDFSFQPQARPSTTSASMFQPSTTTITTEQALRGQQPAWSFQEPTKQDSFSSEKT 202

Query: 53  GVKSEFAPMESFSSDMASYQTNVQSNAAPQSG---NYGHYNQSSAYTREQKRSEDGYNWR 109
            VKSEF   +SFS ++A+ QTN QSN    +G   +YG Y+ SS   REQ+RSEDGYNWR
Sbjct: 203 TVKSEFGSYQSFSPEIATIQTNTQSNGNGNNGFQSDYGSYHASSQSIREQRRSEDGYNWR 262

Query: 110 KYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSS 169
           KYGQKQVKGSENPRSY+KCT+P+CP KKKVERSL+GQ+TEIVYKG+HNHPKP STRRSS 
Sbjct: 263 KYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQVTEIVYKGTHNHPKPQSTRRSSL 322

Query: 170 SQS--MQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGD 227
           S S  +Q S   N+++ DQ     G    DS +    SS S G+DDF EQ S  S   GD
Sbjct: 323 SSSQTIQASNPPNNEVPDQPFVAHGTGQMDSVATPENSSISMGDDDF-EQSSQKSKSGGD 381

Query: 228 D-DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
           D DE+EP+AKRWK E++ EG+   GSRTVREPR+VVQTTSDIDILDDGYRWRKYGQKVVK
Sbjct: 382 DFDEDEPEAKRWKKESENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVK 441

Query: 287 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQEVKRHI 345
           GNPNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPAAR      V R +
Sbjct: 442 GNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPL 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121399|gb|ACV92019.1| WRKY transcription factor 17 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/344 (65%), Positives = 269/344 (78%), Gaps = 21/344 (6%)

Query: 2   EENNYFDFSFQTQTRPSS----------NSVSVQEESVKRQQEPWNFNKPTKESDFST-E 50
           +E NY DFSF TQTRP +          NSV+V E+S+KR+QE WNF++  K++DFS+ +
Sbjct: 139 QEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTV-EKSLKRKQEEWNFDQ-LKQTDFSSDQ 196

Query: 51  NPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRK 110
             GVKSEFAP +SFSS++   Q N+QS       ++  YNQS+ Y RE K+S+DGYNWRK
Sbjct: 197 KTGVKSEFAPEQSFSSELGPLQANMQSVNTAAQPSFNQYNQSAHYMRENKKSDDGYNWRK 256

Query: 111 YGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSS 170
           YGQKQVKGSENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPK   + R SSS
Sbjct: 257 YGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPK-LQSSRRSSS 315

Query: 171 QSMQHSTCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDE 230
           Q +Q S  A+S++SDQSV P+     +S  MQ +SS S GED+F +  S  S    +D+ 
Sbjct: 316 QLVQPSGGASSEISDQSVAPV-----ESSMMQEDSSISLGEDEFDQSSSMNSGE--EDNA 368

Query: 231 NEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 290
           NEPDAKRW+G+N+ E ++G GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN
Sbjct: 369 NEPDAKRWQGQNENESILGAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPN 428

Query: 291 PRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           PRSYYKCT+ GCPVRKHV RAS D+RAVITTYEGKHNHDVPAAR
Sbjct: 429 PRSYYKCTSVGCPVRKHVGRASQDLRAVITTYEGKHNHDVPAAR 472

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568170|ref|XP_003552286.1| PREDICTED: probable WRKY transcription factor 33-like [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/334 (64%), Positives = 260/334 (77%), Gaps = 6/334 (1%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           +E NY DFSFQTQ + S N    Q+E +K+Q + W FN+PTK+SDFS+E    KSE+  +
Sbjct: 104 DEKNYSDFSFQTQIQSSLNMF--QQEPLKKQ-DMWKFNEPTKQSDFSSERTATKSEYPSI 160

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           + FSS+MA+ +  +QSN+ P SG Y  Y  +S   REQKR+EDG+NWRKYGQKQVKGSEN
Sbjct: 161 QKFSSEMAAGKPEIQSNSVPGSG-YFDYTSASLSVREQKRAEDGFNWRKYGQKQVKGSEN 219

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQ-HSTCAN 180
           PRSY+KCT P+C +KKKVE++L+GQITEIVYKG HNHPK  STRR++S    Q  S+C N
Sbjct: 220 PRSYYKCTHPNCSVKKKVEKTLEGQITEIVYKGQHNHPKLQSTRRTNSQSINQPSSSCTN 279

Query: 181 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 240
           S +SDQSV  LGN   D FS+Q +SS S GE++F EQ S TS   GD+D   PDAKRWK 
Sbjct: 280 SGISDQSVVTLGNPQMDHFSIQEDSSASVGEENF-EQTSQTSYSGGDEDNLGPDAKRWKE 338

Query: 241 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTT 300
           +N  +G   +GSRTVREPR+VVQTTS+IDILDDG+RWRKYGQKVVKGNPN RSYYKCT  
Sbjct: 339 DNKNDGYSVSGSRTVREPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTAP 398

Query: 301 GCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           GC VRKHVERA+HD++AVITTYEGKHNHDVPAAR
Sbjct: 399 GCSVRKHVERAAHDIKAVITTYEGKHNHDVPAAR 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399143|gb|ADL36866.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/335 (65%), Positives = 265/335 (79%), Gaps = 21/335 (6%)

Query: 6   YFDFSFQTQTRPSSN-----SVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 60
           + DFSFQ ++RP++N     S+   EE  KR+++ W+F+  T+++D S E  GVKSEF P
Sbjct: 129 FSDFSFQPESRPATNLQSASSMVSVEEPFKRERQAWDFST-TRQADSSAEKTGVKSEFEP 187

Query: 61  MESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSE 120
           +E      A+ Q+N   N AP+S +Y H  QSS Y REQK S+DG+NWRKYGQKQVKGSE
Sbjct: 188 IE------ANTQSNGL-NGAPKS-DYLHSTQSSQYGREQK-SDDGFNWRKYGQKQVKGSE 238

Query: 121 NPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTCAN 180
           NPRSY+KCTFP+CP KKKVERSLDGQIT+IVYKGSHNHPKP STRRSSS+ ++Q S+   
Sbjct: 239 NPRSYYKCTFPNCPTKKKVERSLDGQITQIVYKGSHNHPKPQSTRRSSSN-AIQGSSYV- 296

Query: 181 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 240
             +SDQSV  L N   +S ++Q +SSTS GED+F EQ SP SN  G +DENEP+AKRWKG
Sbjct: 297 --ISDQSVPTLSNPKVESITLQEDSSTSMGEDEF-EQNSPISNSGGAEDENEPEAKRWKG 353

Query: 241 EN-DIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT 299
           EN + +  + +GSR V+EPRIVVQTTS+IDILDDGYRWRKYGQKVVKGNPNPRSYYKCT+
Sbjct: 354 ENANDQAYVSSGSRIVKEPRIVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTS 413

Query: 300 TGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
            GCPVRKHVERASHD +AVITTYEGKHNHDVPAAR
Sbjct: 414 VGCPVRKHVERASHDTKAVITTYEGKHNHDVPAAR 448

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571505|ref|XP_002526700.1| transcription factor, putative [Ricinus communis] gi|223534000|gb|EEF35722.1| transcription factor, putative [Ricinus communis]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/336 (64%), Positives = 257/336 (76%), Gaps = 36/336 (10%)

Query: 2   EENNYFDFSFQTQTRPS-SNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAP 60
           +E  Y DFSFQTQTRP  ++S S  E+ V                        VK EF P
Sbjct: 157 DEKTYSDFSFQTQTRPLLASSSSPSEKGV------------------------VKQEFTP 192

Query: 61  MESFSSDMASYQTNVQSNA-APQ-SGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKG 118
           ++SFSS+MA  Q+++Q+NA APQ   +Y HY+Q ++Y REQ+RS+DGYNWRKYGQKQVKG
Sbjct: 193 VQSFSSEMAPLQSSMQTNAVAPQPQPSYNHYSQPASYMREQRRSDDGYNWRKYGQKQVKG 252

Query: 119 SENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQHSTC 178
           SENPRSY+KCT+P+CP KKKVERSLDGQITEIVYKGSHNHPKP   +  SSSQ +Q +  
Sbjct: 253 SENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKP---QARSSSQLIQLAAG 309

Query: 179 ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRW 238
              ++SDQS  P+     +S +MQ +SS S G+D+F +Q SP SN  G++DENEP+AKR+
Sbjct: 310 GTQEISDQSFAPV-----ESVTMQEDSSLSIGDDEF-DQSSPISNSGGNEDENEPEAKRF 363

Query: 239 KGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 298
           KG+N+ E ++  GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT
Sbjct: 364 KGQNENESILAAGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 423

Query: 299 TTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           + GCPVRKHVERASHD RAVITTYEGKHNHDVPAAR
Sbjct: 424 SIGCPVRKHVERASHDTRAVITTYEGKHNHDVPAAR 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5917653|gb|AAD55974.1|AF121353_1 zinc-finger type transcription factor WRKY1 [Petroselinum crispum]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/346 (62%), Positives = 252/346 (72%), Gaps = 23/346 (6%)

Query: 2   EENNYFDFSFQTQTRPSSNSVS--------VQEESVKRQQEPWNFNKPTKESDFSTENPG 53
           E  N+ DFSF  QTRP+S++ S        + E+S+KR+Q  WNF +P K++DF  +N  
Sbjct: 80  ENQNFSDFSFPAQTRPASSTSSSFIPANTNLVEDSLKRKQGGWNFEEPAKKNDFLMDNAS 139

Query: 54  VKSEFAPMESFSSDMASYQTNVQSNAAPQSG--NYGHYNQSSAYTREQKRSEDGYNWRKY 111
           V S+ A ++  S +M     N+QSNAA QS   NY   +QSS   R+Q + +DGYNWRKY
Sbjct: 140 VTSDIATLQRISPEMTMNHANMQSNAALQSNLNNYAQSSQSSQTNRDQSKLDDGYNWRKY 199

Query: 112 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQ 171
           GQKQVKGSENPRSY+KCT+ +CP KKKVE + DG ITEIVYKG+HNHPKP ST+RSSS Q
Sbjct: 200 GQKQVKGSENPRSYYKCTYLNCPTKKKVETTFDGHITEIVYKGNHNHPKPQSTKRSSS-Q 258

Query: 172 SMQHS--TCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDD 229
           S Q+S  T   S L       L N  ++  +    SS SFGEDD  EQGS   N  GDDD
Sbjct: 259 SYQNSIGTMPESSL-------LENGRSEPVTTPENSSLSFGEDDLFEQGS--MNKPGDDD 309

Query: 230 ENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 288
           ENEPD+KRWKGE +  E +   GSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN
Sbjct: 310 ENEPDSKRWKGEYESNEPMSSLGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 369

Query: 289 PNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           PNPRSYYKCT  GCPVRKHVERASHD+RAVITTYEGKHNHDVPA R
Sbjct: 370 PNPRSYYKCTQVGCPVRKHVERASHDLRAVITTYEGKHNHDVPAPR 415

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532213|ref|XP_003534668.1| PREDICTED: probable WRKY transcription factor 33-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/334 (63%), Positives = 255/334 (76%), Gaps = 6/334 (1%)

Query: 2   EENNYFDFSFQTQTRPSSNSVSVQEESVKRQQEPWNFNKPTKESDFSTENPGVKSEFAPM 61
           +E NY DFSFQTQ + SSN   V  E +K+Q + W FN+PTK++DFS E    KSEF  +
Sbjct: 107 DEKNYSDFSFQTQIQSSSNMFQV--EPLKKQ-DMWKFNEPTKQTDFSPERTATKSEFPSI 163

Query: 62  ESFSSDMASYQTNVQSNAAPQSGNYGHYNQSSAYTREQKRSEDGYNWRKYGQKQVKGSEN 121
           +SFSS+MA  +  +QS++ P SG Y  Y  +S   REQKR+EDG+NW KYGQKQVKGSEN
Sbjct: 164 QSFSSEMAEGKPEIQSSSVPGSG-YFDYTSASQSVREQKRTEDGFNWIKYGQKQVKGSEN 222

Query: 122 PRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPTSTRRSSSSQSMQ-HSTCAN 180
           PRSY+KCT P+C +KKKVE+SLDG ITEIVYKG H+HPKP STRR++S    Q  S+C N
Sbjct: 223 PRSYYKCTHPNCSVKKKVEKSLDGHITEIVYKGQHSHPKPQSTRRTNSQSIHQPSSSCTN 282

Query: 181 SDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKG 240
           S ++D SV  LGN   D FS+Q +SS S GE++F EQ   TS   GD D   PDAKRWKG
Sbjct: 283 SGITDHSVVTLGNPQMDHFSIQEDSSASVGEEEF-EQTPQTSYSGGDGDNLGPDAKRWKG 341

Query: 241 ENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTT 300
           +N+ +G   + SR+VREPR+VV+TTS+IDILDDG+RWRKYGQKVVKGN N RSYYKCT  
Sbjct: 342 DNENDGYSVSASRSVREPRVVVETTSEIDILDDGFRWRKYGQKVVKGNSNARSYYKCTAP 401

Query: 301 GCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
           GC VRKHVERA+HD++AVITTYEGKHNHDVPAAR
Sbjct: 402 GCSVRKHVERAAHDIKAVITTYEGKHNHDVPAAR 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.663	0.470	0.687	1.3e-92
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.755	0.541	0.498	1.1e-72
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.877	0.628	0.451	4.9e-69
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.383	0.205	0.586	2.1e-68
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.771	0.722	0.47	8.7e-67
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.288	0.250	0.722	5.4e-65
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.660	0.436	0.5	4.2e-63
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.339	0.220	0.625	3.6e-59
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.407	0.308	0.474	1.3e-55
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.646	0.554	0.445	6.7e-49

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
 Identities = 176/256 (68%), Positives = 195/256 (76%)

Query:    90 NQSSAYT-REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
             NQ+ +Y  REQ++ EDGYNWRKYGQKQVKGSENPRSY+KCTFP+CP KKKVERSL+GQIT
Sbjct:   170 NQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQIT 229

Query:   149 EIVYKGSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQ----SVGPLGNT--H-TDSFSM 201
             EIVYKGSHNHPKP                  N+ L       S  P  N   H +DSF M
Sbjct:   230 EIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query:   202 QNESST---SFGEDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREP 258
             Q E +T   S G+D+F EQGS   +   +D  +EP+AKRWKG+N+  G  G GS+TVREP
Sbjct:   290 QQEDNTTSDSVGDDEF-EQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREP 348

Query:   259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
             RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT GCPVRKHVERASHDMRAV
Sbjct:   349 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAV 408

Query:   319 ITTYEGKHNHDVPAAR 334
             ITTYEGKHNHDVPAAR
Sbjct:   409 ITTYEGKHNHDVPAAR 424

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 145/291 (49%), Positives = 182/291 (62%)

Query:    55 KSEFAPMESFSSDMASY-QTNVQSNAAPQ--SGNYGHYNQSSAYTREQKRSEDGYNWRKY 111
             ++    + SFSS   S  + +VQ  +  Q  +     +   S      K ++DGYNWRKY
Sbjct:   199 QASLTEIPSFSSAPRSQIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKY 258

Query:   112 GQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXX 171
             GQKQVKGS+ PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HNH  P          
Sbjct:   259 GQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELPQKRGNNNGS- 317

Query:   172 XXXXXXCANSDLSDQ---SVGPLGNTHTDSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD 228
                   C +SD+++Q   S   L  +  D  + Q  ++    E    E+       +G+ 
Sbjct:   318 ------CKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGER 371

Query:   229 DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN 288
              E+EPD KR   E  +   + +  RTV EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGN
Sbjct:   372 HEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 431

Query:   289 PNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHHHQ 339
             P PRSYYKCTT  C VRKHVERA+ D +AV+TTYEGKHNHDVPAAR   HQ
Sbjct:   432 PYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQ 482

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 153/339 (45%), Positives = 199/339 (58%)

Query:    42 TKESDFSTENPGVKSEFAP---MESFSSDMASYQTNVQSNAAPQSGNYGHY-NQSSAYTR 97
             T ++  +  N   ++E+ P   ++SFSS  A   T+    A  ++ +     ++S     
Sbjct:   164 TAQAVQANANMQPQTEYPPPSQVQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLN 223

Query:    98 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHN 157
               K ++DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERSLDGQ+TEI+YKG HN
Sbjct:   224 VDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHN 283

Query:   158 HPKPXXXXXXXXXXXXXXXXCA-NSDLSDQSVGPLG---NTHTDSFSMQNESSTSFGEDD 213
             H  P                 + N++     +G      N+   +   Q+E+ +     +
Sbjct:   284 HEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTE 343

Query:   214 FVEQ---GSPTSN---PIGDDDENEPDAKRWKGENDI-EGVIGTGSRTVREPRIVVQTTS 266
              + +   G    N    + + DENEPD KR   E  I E       RTV EPRI+VQTTS
Sbjct:   344 HLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTS 403

Query:   267 DIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKH 326
             ++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TTYEGKH
Sbjct:   404 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKH 463

Query:   327 NHDVPAARFHHHQEVKRHIQPQCCRAQGVMESQDLQSQQ 365
             NHD+PAA+   H      ++P   R  G+      Q QQ
Sbjct:   464 NHDLPAAKSSSHAAAAAQLRPDN-RPGGLANLNQQQQQQ 501

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 2.1e-68, Sum P(3) = 2.1e-68
 Identities = 88/150 (58%), Positives = 109/150 (72%)

Query:   197 DSFSMQNESSTSFGEDDFVEQGSPTSNPIGDD--------DENEPDAKRWKGENDIEGVI 248
             D   + + SST   ++D  ++G+  S  +G D        + +E ++KR K E     + 
Sbjct:   405 DPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRKLEAFAAEMS 464

Query:   249 GTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHV 308
             G+ +R +REPR+VVQTTSD+DILDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC VRKHV
Sbjct:   465 GS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHV 523

Query:   309 ERASHDMRAVITTYEGKHNHDVPAARFHHH 338
             ERASHD+++VITTYEGKHNHDVPAAR   H
Sbjct:   524 ERASHDLKSVITTYEGKHNHDVPAARNSSH 553

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 141/300 (47%), Positives = 176/300 (58%)

Query:    35 PWNF-NKPTKESDFSTENPGVKSEFAPMESFSSDMASYQTNVQSNAAPQSGNYGHYNQSS 93
             PW   ++P+  S    E  GV+      E   +++A+ Q N QS    +      Y  S 
Sbjct:   105 PWQLQSQPSNASSALQETYGVQDHEKKQEMIPNEIAT-QNNNQSFGTERQIKIPAYMVS- 162

Query:    94 AYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYK 153
                   + S DGY WRKYGQKQVK SENPRSYFKCT+PDC  KK VE + DGQITEI+YK
Sbjct:   163 ------RNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYK 216

Query:   154 GSHNHPKPXXXXXXXXXXXXXXXXCANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDD 213
             G HNHPKP                  N          +   H  S   +N SS SF   D
Sbjct:   217 GGHNHPKPEFTKRPSQSSLPSS---VNGRRLFNPASVVSEPHDQS---EN-SSISFDYSD 269

Query:   214 FVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDD 273
               ++   +     D++E +P+ KR K E + EG+    S+ V+EPR+VVQT SDID+L D
Sbjct:   270 LEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLID 329

Query:   274 GYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 333
             G+RWRKYGQKVVKGN NPRSYYKCT  GC V+K VER++ D RAV+TTYEG+HNHD+P A
Sbjct:   330 GFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 78/108 (72%), Positives = 88/108 (81%)

Query:   227 DDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVK 286
             DDDE++ D    K    I+GV  T  RTV EP+I+VQT S++D+LDDGYRWRKYGQKVVK
Sbjct:   263 DDDEDDEDLPASKIRR-IDGV-STTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVK 320

Query:   287 GNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 334
             GNP+PRSYYKCTT  C VRKHVERAS D +AVITTYEGKHNHDVPAAR
Sbjct:   321 GNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAAR 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 125/250 (50%), Positives = 165/250 (66%)

Query:   102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQITEIVYKGSHNHPKP 161
             ++DGYNWRKYGQK VKGSE PRSY+KCT P+C +KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct:   210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269

Query:   162 XXXXXXXXXXXXXXXXC----ANSDLSDQSVGPLGNTHTDSFSMQNESSTSFGEDDFVEQ 217
                                  +++   ++  G    ++ +  +   E       DD  E 
Sbjct:   270 QPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEA 329

Query:   218 GSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDILDDGYRW 277
              +   N   + D+++P +KR + E  +E  I    + +REPR+VVQT S++DILDDGYRW
Sbjct:   330 AASNRNK-DEPDDDDPFSKRRRMEGAME--ITPLVKPIREPRVVVQTLSEVDILDDGYRW 386

Query:   278 RKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARFHH 337
             RKYGQKVV+GNPNPRSYYKCT  GCPVRKHVERASHD +AVITTYEGKH+HDVP ++   
Sbjct:   387 RKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSS 446

Query:   338 HQEVKRHIQP 347
             + E++   +P
Sbjct:   447 NHEIQPRFRP 456

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
 Identities = 80/128 (62%), Positives = 91/128 (71%)

Query:   211 EDDFVEQGSPTSNPIGDDDENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDIDI 270
             EDD     S +    G+ +E+E  +KR K E       G+ +R  REPR+VVQTTSDIDI
Sbjct:   314 EDDRTSHMSVSLTYDGEVEESE--SKRRKLEAYATETSGS-TRASREPRVVVQTTSDIDI 370

Query:   271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDV 330
             LDDGYRWRKYGQKVVKGNPNPRSYYKCT  GC V KHVERAS D ++V+TTY GKH H V
Sbjct:   371 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVV 430

Query:   331 PAARFHHH 338
             PAAR   H
Sbjct:   431 PAARNSSH 438

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 74/156 (47%), Positives = 98/156 (62%)

Query:   212 DDFVEQGSPTSNPIGDD---DENEPDAKRWKGENDIEGVIGTGSRTVREPRIVVQTTSDI 268
             DD     S +S   GD+   D N P AKR K   +IE  +    R+  + RIVV T +  
Sbjct:   246 DDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGGNIE--LSPVERSTNDSRIVVHTQTLF 303

Query:   269 DILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNH 328
             DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +ITTYEGKH+H
Sbjct:   304 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDH 363

Query:   329 DVPAARF-HHHQEVKRHIQPQCCRAQGVMESQDLQS 363
             D+P  R   H+  +   +  +   A    +S  LQS
Sbjct:   364 DMPPGRVVTHNNMLDSEVDDKEGDANKTPQSSTLQS 399

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 114/256 (44%), Positives = 146/256 (57%)

Query:    89 YNQSSAYTREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSLDGQIT 148
             + +S   T ++  S DGYNWRKYGQKQVKGSE PRSY+KCT P CP+KKKVERS++GQ++
Sbjct:   152 FTESETSTGDRS-SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVS 210

Query:   149 EIVYKGSHNHPKPX--XXXXXXXXXXXXXXXCANSDLSDQSVG--PLGNTHTDSFSMQNE 204
             EIVY+G HNH KP                     S  S+ S+G  P  N ++  ++ Q+ 
Sbjct:   211 EIVYQGEHNHSKPSCPLPRRASSSISSGFQKPPKSIASEGSMGQDPNNNLYSPLWNNQSN 270

Query:   205 SSTSFGEDDFVEQG---SPTSNPIGDDDENEPDAKR--WKGENDIEGVIGTGSRTVREPR 259
              ST     + + +G   +P    +     + P       K     EG +   SR+ R   
Sbjct:   271 DSTQ-NRTEKMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKN 329

Query:   260 I-------VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERAS 312
                     V Q + + D L+DG+RWRKYGQKVV GN  PRSYY+CT+  C  RKHVERAS
Sbjct:   330 EKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERAS 389

Query:   313 HDMRAVITTYEGKHNH 328
              D RA ITTYEGKHNH
Sbjct:   390 DDPRAFITTYEGKHNH 405

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8P5	WRK33_ARATH	No assigned EC number	0.7265	0.6630	0.4701	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00161228	hypothetical protein (534 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_II1481	hypothetical protein (372 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-33
smart00774	59	smart00774, WRKY, DNA binding domain	5e-33
smart00774	59	smart00774, WRKY, DNA binding domain	4e-29

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  123 bits (312), Expect = 1e-35
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD 329
           LDDGY WRKYGQK VKG+P PRSYY+CT+ GCPV+K VER+S D + V  TYEG+HNH 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  118 bits (298), Expect = 2e-33
 Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 160
            +DGYNWRKYGQK VKGS  PRSY++CT P CP+KK+VERS  D QI EI Y+G HNHPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  117 bits (295), Expect = 5e-33
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 271 LDDGYRWRKYGQKVVKGNPNPRSYYKCT-TTGCPVRKHVERASHDMRAVITTYEGKHNH 328
           LDDGY+WRKYGQKV+KG+P PRSYY+CT T GCP +K V+R+  D   V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  106 bits (268), Expect = 4e-29
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH 158
           +DGY WRKYGQK +KGS  PRSY++CT+   CP KK+V+RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.45
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	89.68
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	86.85

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=3.3e-32  Score=208.65  Aligned_cols=59  Identities=66%  Similarity=1.301  Sum_probs=52.6

Q ss_pred             ccccchhhhcCCcccCCCCCCCccccccCCCCCcccchhhhcCCCCEEEEEEeccCCCC
Q 017677          271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHD  329 (368)
Q Consensus       271 ~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~  329 (368)
                      |||||+|||||||.|+|+++||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            68999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=7.4e-31  Score=200.97  Aligned_cols=58  Identities=64%  Similarity=1.263  Sum_probs=56.6

Q ss_pred             ccccchhhhcCCcccCCCCCCCccccccC-CCCCcccchhhhcCCCCEEEEEEeccCCC
Q 017677          271 LDDGYRWRKYGQKVVKGNPNPRSYYKCTT-TGCPVRKHVERASHDMRAVITTYEGKHNH  328 (368)
Q Consensus       271 ~dDGY~WRKYGQK~ikgn~~pRsYYrCt~-~gC~a~K~Ver~~~D~~~~~~TY~G~HnH  328 (368)
                      ++|||+|||||||.|||+++||+||||+. +||+|+|+|||+++|+.+|+|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999998 89999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=4.9e-30  Score=196.68  Aligned_cols=59  Identities=61%  Similarity=1.217  Sum_probs=50.5

Q ss_pred             CCCCccccccCcccCCCCCCCCCCCCCCCCCCccccchhccc-CCceeeeeecccCCCCC
Q 017677          102 SEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK  160 (368)
Q Consensus       102 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh~~  160 (368)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999987 77888999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=7.9e-29  Score=189.80  Aligned_cols=57  Identities=56%  Similarity=1.154  Sum_probs=54.7

Q ss_pred             CCCCccccccCcccCCCCCCCCCCCCCCC-CCCccccchhccc-CCceeeeeecccCCC
Q 017677          102 SEDGYNWRKYGQKQVKGSENPRSYFKCTF-PDCPMKKKVERSL-DGQITEIVYKGSHNH  158 (368)
Q Consensus       102 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh  158 (368)
                      .+|||.|||||||.|+|+++||+||||++ ++|+|+|+||++. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 8999999999986 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.45  E-value=0.059  Score=39.33  Aligned_cols=49  Identities=31%  Similarity=0.700  Sum_probs=24.9

Q ss_pred             cccccchhhhcCCcccCCCCCCCccccccCC---CCCcccchhhhcCCCCEEEEEEeccCCC
Q 017677          270 ILDDGYRWRKYGQKVVKGNPNPRSYYKCTTT---GCPVRKHVERASHDMRAVITTYEGKHNH  328 (368)
Q Consensus       270 ~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~---gC~a~K~Ver~~~D~~~~~~TY~G~HnH  328 (368)
                      |+-|||+-++....      ....|++|+..   +|+|+=.+.  .++. .+ +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~-~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RV-VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EE-EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EE-EECCCccCC
Confidence            44589988775554      45689999953   899987776  2333 33 445599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=89.68  E-value=0.15  Score=40.48  Aligned_cols=31  Identities=35%  Similarity=0.559  Sum_probs=26.6

Q ss_pred             CCCCcccchhhhcCCCCEEEEEEeccCCCCCC
Q 017677          300 TGCPVRKHVERASHDMRAVITTYEGKHNHDVP  331 (368)
Q Consensus       300 ~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p  331 (368)
                      .||+|+=.|-+.. |...+|+.+..+|||++-
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            5999998887755 888899999999999864

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.85  E-value=0.12  Score=37.67  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             cCCCCccccccCcccCCCCCCCCCCCCCCCC---CCccccchhcccCCceeeeeecccCCC
Q 017677          101 RSEDGYNWRKYGQKQVKGSENPRSYFKCTFP---DCPMKKKVERSLDGQITEIVYKGSHNH  158 (368)
Q Consensus       101 ~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~---~C~akK~Ver~~dg~~~~i~Y~G~Hnh  158 (368)
                      ..-|||.-++....      ..+.|++|+..   +|+|+=.+.  .++. ..+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEEECCCccCC
Confidence            45788886665444      34579999865   799976665  2222 23445599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	368
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-31
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		4e-27

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 66/71 (92%)
Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 321
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 322 YEGKHNHDVPA 332
           YEGKHNHD+PA
Sbjct: 68  YEGKHNHDLPA 78

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 319 ITTYEGKHNHDVP 331
           ITTYEGKH+HD+P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-48
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-26
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-45
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-26

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  156 bits (396), Expect = 3e-48
 Identities = 59/77 (76%), Positives = 66/77 (85%)

Query: 256 REPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDM 315
                 VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 316 RAVITTYEGKHNHDVPA 332
           +AV+TTYEGKHNHD+PA
Sbjct: 62  KAVVTTYEGKHNHDLPA 78

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 99.0 bits (247), Expect = 4e-26
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
           +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  149 bits (378), Expect = 2e-45
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 259 RIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAV 318
           RIVV T +  DI++DGYRWRKYGQK VKG+P PRSYY+C++ GCPV+KHVER+SHD + +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 319 ITTYEGKHNHDVPAA 333
           ITTYEGKH+HD+P  
Sbjct: 62  ITTYEGKHDHDMPPG 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  100 bits (250), Expect = 1e-26
 Identities = 34/61 (55%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 103 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKP 161
            DGY WRKYGQK VKGS  PRSY++C+ P CP+KK VERS  D ++    Y+G H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

Query: 162 T 162
            
Sbjct: 75  P 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	83.64

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-37  Score=245.45  Aligned_cols=76  Identities=67%  Similarity=1.280  Sum_probs=73.4

Q ss_pred             cceEEeeccccccccccchhhhcCCcccCCCCCCCccccccCCCCCcccchhhhcCCCCEEEEEEeccCCCCCCcc
Q 017677          258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA  333 (368)
Q Consensus       258 ~rvvv~t~s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~~  333 (368)
                      .||+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|.+
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999999999863

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=6.5e-37  Score=244.65  Aligned_cols=75  Identities=79%  Similarity=1.297  Sum_probs=69.8

Q ss_pred             cceEEeeccccccccccchhhhcCCcccCCCCCCCccccccCCCCCcccchhhhcCCCCEEEEEEeccCCCCCCc
Q 017677          258 PRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  332 (368)
Q Consensus       258 ~rvvv~t~s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~  332 (368)
                      .+|+|+|.+++++++|||+|||||||.|||+++||+||||+.+||+|+|+|||+++|+.+|+|||+|+|||+.|+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999984

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=1.7e-30  Score=206.76  Aligned_cols=66  Identities=52%  Similarity=0.980  Sum_probs=61.0

Q ss_pred             eccccCCCCccccccCcccCCCCCCCCCCCCCCCCCCccccchhccc-CCceeeeeecccCCCCCCC
Q 017677           97 REQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (368)
Q Consensus        97 ~~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh~~p~  162 (368)
                      .+...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus         9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            34567899999999999999999999999999999999999999986 6788999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=2e-30  Score=207.26  Aligned_cols=65  Identities=52%  Similarity=0.981  Sum_probs=60.1

Q ss_pred             ccccCCCCccccccCcccCCCCCCCCCCCCCCCCCCccccchhccc-CCceeeeeecccCCCCCCC
Q 017677           98 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (368)
Q Consensus        98 ~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh~~p~  162 (368)
                      +...++|||+|||||||.|||+++||+|||||+++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus        13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            3566899999999999999999999999999999999999999975 6788999999999999873

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=83.64  E-value=0.43  Score=37.35  Aligned_cols=55  Identities=20%  Similarity=0.413  Sum_probs=35.0

Q ss_pred             cccccccccchhhhcCCcccCCCCCCCccccccC---CCCCcccchhhhcCCCCEEEEEEeccCCCCCCcc
Q 017677          266 SDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTT---TGCPVRKHVERASHDMRAVITTYEGKHNHDVPAA  333 (368)
Q Consensus       266 s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~---~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~~  333 (368)
                      ...-|+-|||.-.+--+      ...+.|.+|+.   .+|.|+=....  ++   +  ...+.|||++...
T Consensus        19 G~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~~~   76 (87)
T 2rpr_A           19 GGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPDLA   76 (87)
T ss_dssp             TEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCCHH
T ss_pred             CCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCchh
Confidence            33346679998876321      12368999995   58999854432  11   3  3568999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	2e-35
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-25

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (307), Expect = 2e-35
 Identities = 59/71 (83%), Positives = 66/71 (92%)

Query: 262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITT 321
           VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSYYKCTT GC VRKHVERA+ D +AV+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 322 YEGKHNHDVPA 332
           YEGKHNHD+PA
Sbjct: 61  YEGKHNHDLPA 71

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 94.9 bits (236), Expect = 3e-25
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 96  TREQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKG 154
           T E    +DGY WRKYGQK VKG+  PRSY+KCT P C ++K VER+  D +     Y+G
Sbjct: 4   TSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 63

Query: 155 SHNHPKP 161
            HNH  P
Sbjct: 64  KHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-36  Score=236.92  Aligned_cols=71  Identities=83%  Similarity=1.402  Sum_probs=68.8

Q ss_pred             EeeccccccccccchhhhcCCcccCCCCCCCccccccCCCCCcccchhhhcCCCCEEEEEEeccCCCCCCc
Q 017677          262 VQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDMRAVITTYEGKHNHDVPA  332 (368)
Q Consensus       262 v~t~s~~d~~dDGY~WRKYGQK~ikgn~~pRsYYrCt~~gC~a~K~Ver~~~D~~~~~~TY~G~HnH~~p~  332 (368)
                      |+|.++++++||||+|||||||.|||+++||+||||+.+||+|+|+|||+.+|+.+|+|||+|+|||+.|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999885

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=2.8e-31  Score=206.81  Aligned_cols=65  Identities=52%  Similarity=0.981  Sum_probs=60.4

Q ss_pred             ccccCCCCccccccCcccCCCCCCCCCCCCCCCCCCccccchhccc-CCceeeeeecccCCCCCCC
Q 017677           98 EQKRSEDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPKPT  162 (368)
Q Consensus        98 ~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~akK~Ver~~-dg~~~~i~Y~G~Hnh~~p~  162 (368)
                      +...++|||.|||||||.|+|+++||+||||++++|+|+|+|||+. |+.++.|+|+|+|||+.|.
T Consensus         6 ~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           6 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4566899999999999999999999999999999999999999986 6788999999999999874