Citrus Sinensis ID: 017716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCPAD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEEEccccccccHHHHHHHHccccEEEEEEEEEEEEEccEEEEccccEEEEccccEEEEcccEEEEcccEEEEEccEEEcccccccccEEEccccccEEEEcccccccccccEEEEccccEEEEEcEEEEcccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEccccEEEEEccccEEEEEcEEEEccccccEEEEEEccccccccccccEEEEccccccccccccEEccccccccccccccccEEEEEEEEcccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEccccEEEEEEccEEEEEcEEEEEEcccEEccccEEEEEEcccEEEEEEEEEEEEcEEEcccccccccEEEEEcccccEEEEcccccccccccEEEEEccccEEEEccccccccEEEEEEccccccccccEEEEEEEccccccEEccccEEEEEEEEEEccccccEEEEEEcccccEEEccccEEEcccccccEEEEEEcccccHHcccccEccccHHHHHHccccEEEccccccccccccccccHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mgnshghhhhhrneansyfphqtptptpppfkfgpsdhhqhqpaaqfqnnstmslpyahvdcSLRALAGqaegfgrlaigglhgplyhvttladdgpgslregcrmkepLWIVFEVSGtihlrshlsvssyktidgrgqrvkltgkglrlkeCEHVIICNlefeggkgpdvdaiqikpkskhiwidrcslrdyddgliditrestditvsrchfsshdktmligadpshvadrcirvtihhcffdgtrqrhprvrYAKVHLYnnytrnwgIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKasdkeeartdcirsegdlsSLKLKAGLMAEagehnmfhpsehyYTWTLlqrctgwqdvqcpad
Flexible Loop (DISEMBL)
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSgtihlrshlsvssyktidgrgqrvkltgkglrlkeCEHVIICNlefeggkgpdvdaiqikpkskhiwidrcslrdYDDGLIDITrestditvsrchfSSHDKTMLIGADPSHVADRCIRVTIHhcffdgtrqrhprVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEkasdkeeartdcirsegdlsslKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCPAD
Low Complexity Region (SEG)
MGNShghhhhhRNEANSYFPHQtptptpppFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCPAD
Disordered region (IsUnstruct)
******************************************************LPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLT****************************LMA*AGEHNMFHPSEHYYTWTLLQRCTGWQDVQ****
Disordered Region (DISOPRED)
***********************P****************************MSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCP**
Disordered Region (DISEMBL)
*************EANSYFPHQTPTPTPPPFKFG**********AQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEK***********IRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCPAD
Disordered Region (DISPRO)
*****************************PFKFGP****QHQPA****NNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLLQRCTGWQDVQCPAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q9C8G4	368	Probable pectate lyase 4	no	no	0.626	0.625	0.414	4e-43
Q9FM66	392	Putative pectate lyase 21	no	no	0.697	0.653	0.382	5e-42
Q93Z04	501	Probable pectate lyase 13	no	no	0.692	0.506	0.394	7e-40
O65388	384	Putative pectate lyase 2	no	no	0.615	0.588	0.398	2e-39
Q9LTZ0	412	Putative pectate lyase 11	no	no	0.678	0.604	0.362	4e-37
P15721	398	Probable pectate lyase P5	N/A	no	0.749	0.690	0.370	9e-37
P40972	397	Pectate lyase OS=Nicotian	N/A	no	0.749	0.692	0.355	4e-36
Q944R1	470	Probable pectate lyase 15	no	no	0.700	0.546	0.371	7e-36
P27760	398	Pollen allergen Amb a 1.2	N/A	no	0.700	0.645	0.354	1e-35
P27762	397	Pollen allergen Amb a 2 O	N/A	no	0.615	0.569	0.370	1e-35

>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 145/241 (60%), Gaps = 11/241 (4%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
           +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I
Sbjct: 53  QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVI 112

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQ 175
            L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I+
Sbjct: 113 VLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIR 172

Query: 176 IKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCI 235
           +  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +
Sbjct: 173 VF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDM 231

Query: 236 RVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
           RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S +  I+S+ N + A +K
Sbjct: 232 RVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEK 291

Query: 295 K 295
           +
Sbjct: 292 R 292

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2

>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 148/277 (53%), Gaps = 21/277 (7%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGT 119
           + LA  A GFGR +IGG  G  Y VT   DD P     G+LR      +PLWI+F+    
Sbjct: 66  KNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPGTLRYAATQDQPLWIIFDRDMV 125

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEG------------G 166
           I L+  L V+SYKTIDGRG  V++  G  L L +  ++II NL                G
Sbjct: 126 IQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPVKRNALSSLG 185

Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226
              D D I I  +S+ IWID C+L    DGLID    STDIT+S  +  +H++ ML+G  
Sbjct: 186 GYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHS 244

Query: 227 PSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQ 285
             +  DR +RVTI   +F +G  QR PR R+   H+ NN  R+W +YA+  S +  I+SQ
Sbjct: 245 DEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQ 304

Query: 286 CNIYEAGQKKMAFKYLTEKASD-KEEARTDCIRSEGD 321
            N++ A   +   +    +++D  EE +    +SEGD
Sbjct: 305 GNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGD 341

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 149/274 (54%), Gaps = 20/274 (7%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIH 121
           LA  + GFG   +GG +G +Y VT  +D+ P     G+LR G   +EPLWIVF  +  I 
Sbjct: 99  LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIR 158

Query: 122 LRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FEGGKGPDV 171
           L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D 
Sbjct: 159 LKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDG 218

Query: 172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA 231
           D I I   S+ IW+D CS+    DGLID    ST IT+S  +F+ HD+ ML+G D ++  
Sbjct: 219 DGISIF-GSQKIWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP 277

Query: 232 DRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
           D  ++VTI  + F  G  QR PR R   +H+ NN    W +YA+  S +  I SQ N Y 
Sbjct: 278 DTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYS 337

Query: 291 AGQKKMAFKYLTEKASDKEEARTD--CIRSEGDL 322
           A     A K +T++   K++        R+EGDL
Sbjct: 338 APSDPSA-KEVTKRVDSKDDGEWSNWNWRTEGDL 370

Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 135/251 (53%), Gaps = 25/251 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG----PGSLREGCRMKEPLWIVFEVSGTI 120
           RALA  A GFG+ A+GG +G +Y VT  +DD     PG+LR      +PLWI F     I
Sbjct: 54  RALADCAVGFGKSAVGGKYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVI 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFE--------------- 164
            LR+ L ++SYKTIDGRG +V++  G  + ++   HVII  +                  
Sbjct: 114 VLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPT 173

Query: 165 ---GGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
                KG D DAI I   S HIWID C      DGLID+   ST +T+S  +F+ HDK M
Sbjct: 174 HVGSRKGSDGDAIAIF-DSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVM 232

Query: 222 LIGADPSHVADRCIRVTIHHCFFD-GTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+G + ++V D+ +RVTI    F  G  +R PRVR    H+ NN    W +YA+  S D 
Sbjct: 233 LLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADP 292

Query: 281 QIYSQCNIYEA 291
            I+S+ N + A
Sbjct: 293 TIFSEGNYFVA 303

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/287 (36%), Positives = 146/287 (50%), Gaps = 38/287 (13%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIH 121
           LA  A GFG+ AIGG  G +Y VT  A+D P     G+LR     +EPLWI+F+    I 
Sbjct: 83  LADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIR 142

Query: 122 LRSHLSVSSYKTIDGRGQRVKLT-------------------------GKGLRLKECEHV 156
           L+  L ++S+KTIDGRG  V +T                         G G  +K+  H 
Sbjct: 143 LKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHH 202

Query: 157 IICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS 216
               ++ +G      DA+ I    KH+WID CSL + DDGLID    ST IT+S  H + 
Sbjct: 203 TGWWMQSDG------DAVAIF-GGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTH 255

Query: 217 HDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVC 275
           HDK ML+G   S+  D+ ++VTI  + F +G  QR PR R+   H+ NN   +W +YA+ 
Sbjct: 256 HDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 315

Query: 276 ASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
            S    IYSQ N + A   +   +    + + + + R    RSEGD+
Sbjct: 316 GSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDM 362

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2

 Score =  154 bits (390), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 151/308 (49%), Gaps = 33/308 (10%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGTIH 121
           +A  A GFG  A+GG +GP Y VT  +DD      PG+LR G   K PLWI F  S  I 
Sbjct: 66  MADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIR 125

Query: 122 LRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFE---------------- 164
           L   L VSS KTIDGRG+ V +  G G++++   +VII NL                   
Sbjct: 126 LTRELIVSSNKTIDGRGKYVHIANGAGIKIQSASNVIISNLRIHNIVPTAGGLLRESDDH 185

Query: 165 -GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTML 222
            G +G D  DAI I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K ML
Sbjct: 186 LGLRGADEGDAISIF-NSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVML 244

Query: 223 IGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
            GA+     DR +++T+ +  F G R  QR PR R+   HL NN   +W  YA+  S  +
Sbjct: 245 FGANDHAEEDRGMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGA 303

Query: 281 QIYSQCNIYEAGQKKMA--FKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEH 338
            I SQ N + A  K +     Y  +  S  EE       ++GD             +G+ 
Sbjct: 304 TIISQGNRFIAEDKLLVKEVTYREKSTSSVEEWMKWTWITDGDDFE---NGATFTPSGDQ 360

Query: 339 NMFHPSEH 346
           N+    +H
Sbjct: 361 NLLSKIDH 368

Might be needed during pollen development and tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 157/312 (50%), Gaps = 37/312 (11%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           + +A  A GFG  AIGG  G +Y VT  +DD      PG+LR G   KEPLWI+F  +  
Sbjct: 63  QKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMK 122

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFE-------------- 164
           I L   L V+S KTIDGRG  V +  G G++++   ++II NL                 
Sbjct: 123 IKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQSASNIIISNLRIHNIVPTPGGLLRESE 182

Query: 165 ---GGKGPDV-DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
              G +G D  D I I   S  IWID  S+    DGLID    ST+IT+S CHF+ H+K 
Sbjct: 183 DHVGLRGSDEGDGISIF-SSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKV 241

Query: 221 MLIGADPSHVADRCIRVTIHHCFFDGTR--QRHPRVRYAKVHLYNNYTRNWGIYAVCASV 278
           ML GA+  +V D+ +++T+ +  F G R  QR PR R+   HL NN   +W  YA+  S 
Sbjct: 242 MLFGANDHYVLDKDMKITLAYNHF-GKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSS 300

Query: 279 DSQIYSQCNIYEAGQKKMAFKYLTEK----ASDKEEARTDCIRSEGDLSSLKLKAGLMAE 334
            + I SQ N + A + ++  K +T +    AS  E  +   I    D+ +          
Sbjct: 301 GATIISQGNRFIA-EDELLVKEVTYREKLTASVAEWMKWTWISDGDDMEN----GATFTP 355

Query: 335 AGEHNMFHPSEH 346
           +G+ N+    +H
Sbjct: 356 SGDQNLLDKIDH 367

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 141/283 (49%), Gaps = 26/283 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           + LA    GFGR AIGG  G  Y VT   D+      PG+LR     +EPLWIVF+    
Sbjct: 139 KRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMV 198

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKL-TGKGLRLKECEHVIICNLEFEGGK----------- 167
           I L+  L ++S+KTID RG  V +  G  + ++   +VII  L     K           
Sbjct: 199 IELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSP 258

Query: 168 -------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
                    D DA+ I   S HIWID  SL    DGL+D    ST ITVS  HF+ H++ 
Sbjct: 259 SHFGWRTMADGDAVSIF-GSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEV 317

Query: 221 MLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD 279
           ML+G   S+  D+ ++VTI +  F +G  QR PR R+   H+ NN   +W +YA+  S +
Sbjct: 318 MLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAE 377

Query: 280 SQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
             I SQ N Y A   + A +      +D  E +    RSEGDL
Sbjct: 378 PTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDL 420

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P27760|MPA12_AMBAR Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 139/282 (49%), Gaps = 25/282 (8%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           +ALA  A+GF +   GG HG +Y VT+  DD       G+LR       PLWI+F+ +  
Sbjct: 67  QALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMV 126

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVI----------IC-NLEFEGGKG 168
           IHL   L V+S KTIDGRG +V +   GL L   +++I          +C     +   G
Sbjct: 127 IHLNQELVVNSDKTIDGRGVKVNIVNAGLTLMNVKNIIIHNINIHDIKVCPGGMIKSNDG 186

Query: 169 P-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           P       D DAI +   S  IWID CSL    DGL+DIT  S+ +TVS C F+ H   +
Sbjct: 187 PPILRQQSDGDAINVA-GSSQIWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVL 245

Query: 222 LIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+GAD +H  D+ +  T+  + F D   QR PR R+    + NN    WG YA+  S   
Sbjct: 246 LLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAP 305

Query: 281 QIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
            I SQ N + A    +    L    +   E+ +   R++ DL
Sbjct: 306 TILSQGNRFFAPDDIIKKNVLARTGTGNAESMSWNWRTDRDL 347

Ambrosia artemisiifolia (taxid: 4212)

>sp|P27762|MPAA2_AMBAR Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 134/251 (53%), Gaps = 25/251 (9%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADDG-----PGSLREGCRMKEPLWIVFEVSGT 119
           +AL   A+GFG+   GG  G +Y VT+  DD       G+LR G     PLWI+F+    
Sbjct: 66  QALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMI 125

Query: 120 IHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLE------FEGGK-----G 168
           I+L+  + V+S KTIDGRG +V+L   G+ L   ++VII N++        GG+     G
Sbjct: 126 IYLQQEMVVTSDKTIDGRGAKVELVYGGITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGG 185

Query: 169 P-------DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           P       D DAI +   S  IWID C+L    DGL+D+   ST +T+S C F+ H+K +
Sbjct: 186 PAIPRHQSDGDAIHVT-GSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAV 244

Query: 222 LIGADPSHVADRCIRVTIHHCFFDGT-RQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+GA  +H  D  + VT+ +  F  T  +R PR R+    + NN+   W  YA+  S + 
Sbjct: 245 LLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFGFFQIVNNFYDRWDKYAIGGSSNP 304

Query: 281 QIYSQCNIYEA 291
            I SQ N + A
Sbjct: 305 TILSQGNKFVA 315

Ambrosia artemisiifolia (taxid: 4212)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
118483499	386	unknown [Populus trichocarpa]	0.989	0.940	0.734	1e-158
118488640	389	unknown [Populus trichocarpa]	0.991	0.935	0.733	1e-158
225439836	373	PREDICTED: probable pectate lyase 4-like	0.975	0.959	0.740	1e-156
224092007	333	predicted protein [Populus trichocarpa]	0.855	0.942	0.814	1e-154
224140117	333	predicted protein [Populus trichocarpa]	0.855	0.942	0.814	1e-153
297741529	329	unnamed protein product [Vitis vinifera]	0.847	0.945	0.826	1e-153
356548168	366	PREDICTED: probable pectate lyase 4-like	0.961	0.964	0.700	1e-150
255587404	389	Pollen allergen Amb a 1.1 precursor, put	1.0	0.943	0.734	1e-149
147866065	422	hypothetical protein VITISV_005608 [Viti	0.975	0.848	0.654	1e-148
157674317	393	pectate lyase 1 [Hevea brasiliensis]	0.912	0.852	0.737	1e-148

>gi|118483499|gb|ABK93648.1| unknown [Populus trichocarpa]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/384 (73%), Positives = 310/384 (80%), Gaps = 21/384 (5%)

Query: 1   MGNSH--GHHHHHRNEANSYFPHQT---PTPTPP--PFKFGPSDHHQHQPAAQFQNNSTM 53
           MGNSH  GH    R+  N  FP +T   P+ + P  PF + P    Q   ++        
Sbjct: 1   MGNSHDHGHRRKFRDNGNVPFPDKTAAVPSASQPVPPFIYQP----QIPTSSTRTPKMAT 56

Query: 54  SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
           +LPY HVD SLRALA QAEGFGR A GGLHGP+Y+VTTLADDGPGSLR+GCR KEPLWIV
Sbjct: 57  ALPYPHVDSSLRALAAQAEGFGRSANGGLHGPIYYVTTLADDGPGSLRDGCRKKEPLWIV 116

Query: 114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
           FEVSGTI LRS+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD 
Sbjct: 117 FEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDG 176

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDIT+SRC+F  HDKTMLIGADP+HV DR
Sbjct: 177 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCYFGQHDKTMLIGADPTHVGDR 236

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNYTRNWGIYAVCASV+SQIYSQ NIYEAGQ
Sbjct: 237 CIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEAGQ 296

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-- 351
           KK+AFKYL+EKA+DKE+AR+  IRSEGDL     +AGLM E GE  MFHPSE+Y TWT  
Sbjct: 297 KKIAFKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTVE 356

Query: 352 --------LLQRCTGWQDVQCPAD 367
                   +LQ CTGWQ V  PAD
Sbjct: 357 PPTDSLKQVLQHCTGWQCVPRPAD 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488640|gb|ABK96132.1| unknown [Populus trichocarpa]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/386 (73%), Positives = 310/386 (80%), Gaps = 22/386 (5%)

Query: 1   MGNSHGHHHHH--RNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTM----- 53
           MGNSH H HH   RN  N   P +T +         P     +QP      NS++     
Sbjct: 1   MGNSHAHGHHRKFRNNGNVPSPDKTASAP---SPSQPVPPSIYQPEHPLIPNSSIHASSM 57

Query: 54  --SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLW 111
             SLPY+HVD +LRALA QAEGFGR AIGGLHGP+Y+VTTL DDGPGSLR+GCR KEPLW
Sbjct: 58  ATSLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLW 117

Query: 112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDV 171
           IVFEVSGTI L S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDV
Sbjct: 118 IVFEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDV 177

Query: 172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA 231
           D IQIKPKSKHIWIDRCSLRDYDDGLIDI RESTDITVSRCHF+ HDKT+LIGADP+HV 
Sbjct: 178 DGIQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVG 237

Query: 232 DRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA 291
           DRCIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNY RNWGIYAVCASV+SQIYSQCNIYEA
Sbjct: 238 DRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEA 297

Query: 292 GQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT 351
           GQKK+AFKYL+EKA+DKEEA + CIRSEGDL  +  +AGLMAE GE  MFHPSE+Y TWT
Sbjct: 298 GQKKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMAEDGEFCMFHPSEYYPTWT 357

Query: 352 L----------LQRCTGWQDVQCPAD 367
           +          LQ CTGWQ V  PAD
Sbjct: 358 IEPPTDSLKQVLQHCTGWQCVPRPAD 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439836|ref|XP_002277576.1| PREDICTED: probable pectate lyase 4-like [Vitis vinifera]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/377 (74%), Positives = 301/377 (79%), Gaps = 19/377 (5%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MG +HG        + ++  H TP  T  P    P+      P+   + N +  LPYAHV
Sbjct: 1   MGGAHGRC------SGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMS-CLPYAHV 53

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVFEVSG I
Sbjct: 54  DSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGII 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
           HL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD IQIKP S
Sbjct: 114 HLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS 173

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRCIRVTIH
Sbjct: 174 KHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIH 233

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG KK+AFKY
Sbjct: 234 HCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKY 293

Query: 301 LTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT--------- 351
           LTEKA+DKEE RT C+RSEGDL     +AGLM  A E  MFHP E Y TWT         
Sbjct: 294 LTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEAPSDALK 351

Query: 352 -LLQRCTGWQDVQCPAD 367
            +L  CTGWQ V  PAD
Sbjct: 352 QVLHHCTGWQCVPRPAD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092007|ref|XP_002309435.1| predicted protein [Populus trichocarpa] gi|222855411|gb|EEE92958.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/324 (81%), Positives = 286/324 (88%), Gaps = 10/324 (3%)

Query: 54  SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
           SLPY+HVD +LRALA QAEGFGR AIGGLHGP+Y+VTTL DDGPGSLR+GCR KEPLWIV
Sbjct: 4   SLPYSHVDSALRALAAQAEGFGRCAIGGLHGPIYYVTTLLDDGPGSLRDGCRKKEPLWIV 63

Query: 114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
           FEVSGTI L S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD 
Sbjct: 64  FEVSGTIQLGSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDG 123

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDI RESTDITVSRCHF+ HDKT+LIGADP+HV DR
Sbjct: 124 IQIKPKSKHIWIDRCSLRDYDDGLIDINRESTDITVSRCHFAQHDKTILIGADPTHVGDR 183

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNY RNWGIYAVCASV+SQIYSQCNIYEAGQ
Sbjct: 184 CIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYIRNWGIYAVCASVESQIYSQCNIYEAGQ 243

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-- 351
           KK+AFKYL+EKA+DKEEA + CIRSEGDL  +  +AGLM E GE  MFHPSE+Y TWT  
Sbjct: 244 KKIAFKYLSEKAADKEEASSGCIRSEGDLFVIGAQAGLMTEDGEVCMFHPSEYYPTWTVE 303

Query: 352 --------LLQRCTGWQDVQCPAD 367
                   +LQ CTGWQ V  PAD
Sbjct: 304 PPTDSLKQVLQHCTGWQCVPRPAD 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140117|ref|XP_002323433.1| predicted protein [Populus trichocarpa] gi|222868063|gb|EEF05194.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/324 (81%), Positives = 285/324 (87%), Gaps = 10/324 (3%)

Query: 54  SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
           +LPY HVD SLRALA QAEGFGR A GGLHGP+Y+VTTLADDGPGSLR+GCR KEPLWIV
Sbjct: 4   ALPYPHVDSSLRALAAQAEGFGRSANGGLHGPIYYVTTLADDGPGSLRDGCRKKEPLWIV 63

Query: 114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
           FEVSGTI LRS+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD 
Sbjct: 64  FEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDG 123

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDIT+SRC+F  HDKTMLIGADP+HV DR
Sbjct: 124 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCYFGQHDKTMLIGADPTHVGDR 183

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGTRQRHPRVR+ KVHLYNNYTRNWGIYAVCASV+SQIYSQ NIYEAGQ
Sbjct: 184 CIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEAGQ 243

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-- 351
           KK+AFKYL+EKA+DKE+AR+  IRSEGDL     +AGLM E GE  MFHPSE+Y TWT  
Sbjct: 244 KKIAFKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGLMTEDGECCMFHPSEYYPTWTVE 303

Query: 352 --------LLQRCTGWQDVQCPAD 367
                   +LQ CTGWQ V  PAD
Sbjct: 304 PPTDSLKQVLQHCTGWQCVPRPAD 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741529|emb|CBI32661.3| unnamed protein product [Vitis vinifera]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/323 (82%), Positives = 281/323 (86%), Gaps = 12/323 (3%)

Query: 55  LPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVF 114
           LPYAHVD +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVF
Sbjct: 4   LPYAHVDSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVF 63

Query: 115 EVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAI 174
           EVSG IHL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD I
Sbjct: 64  EVSGIIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGI 123

Query: 175 QIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC 234
           QIKP SKHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRC
Sbjct: 124 QIKPNSKHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRC 183

Query: 235 IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
           IRVTIHHCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG K
Sbjct: 184 IRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHK 243

Query: 295 KMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT--- 351
           K+AFKYLTEKA+DKEE RT C+RSEGDL     +AGLM  A E  MFHP E Y TWT   
Sbjct: 244 KVAFKYLTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEA 301

Query: 352 -------LLQRCTGWQDVQCPAD 367
                  +L  CTGWQ V  PAD
Sbjct: 302 PSDALKQVLHHCTGWQCVPRPAD 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548168|ref|XP_003542475.1| PREDICTED: probable pectate lyase 4-like [Glycine max]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/377 (70%), Positives = 297/377 (78%), Gaps = 24/377 (6%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MGNSHGH H  R   NS  P+  P P            H++ P     N++ +SLPY HV
Sbjct: 1   MGNSHGHRH--RKHGNSVPPNTVPPP------------HKYNPHPTTSNSTMLSLPYTHV 46

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LR+LA QAEGFGR AIGGLHGPL+ VT+LADDGPGSLR+ CR KEPLWIVFEVSGTI
Sbjct: 47  DTTLRSLAAQAEGFGRFAIGGLHGPLHPVTSLADDGPGSLRDACRRKEPLWIVFEVSGTI 106

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
            L S+L+VSS+KTIDGRGQR+KL+GKGLRLKECEHVIICNLEFEGG+G DVDAIQIKP S
Sbjct: 107 QLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNS 166

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRC+L D+DDGLIDITRESTDIT+SRCHFS HDK MLIGADP+HV DRC+RVTIH
Sbjct: 167 KHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPTHVGDRCMRVTIH 226

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFF+GTRQR PRVR+AKVHLYNNY RNWGIYAVCASV+SQI+SQ NIYEAGQKK+AFKY
Sbjct: 227 HCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKY 286

Query: 301 LTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT--------- 351
           LTEKA+DKE   T  IRSEGD+     + GLM E    NMFHPSEHY +WT         
Sbjct: 287 LTEKAADKEVGATGTIRSEGDIFLNGAQKGLMTEDVGCNMFHPSEHYPSWTVEAPTDDLK 346

Query: 352 -LLQRCTGWQDVQCPAD 367
            +L  CTGWQ +  PAD
Sbjct: 347 QILHHCTGWQSLAKPAD 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587404|ref|XP_002534262.1| Pollen allergen Amb a 1.1 precursor, putative [Ricinus communis] gi|223525624|gb|EEF28121.1| Pollen allergen Amb a 1.1 precursor, putative [Ricinus communis]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 282/384 (73%), Positives = 304/384 (79%), Gaps = 17/384 (4%)

Query: 1   MGNSHGHHHHHRNEA--NSYFPHQTPTPTPPPF-KFGPSDHHQHQPAAQFQNNSTMSLPY 57
           MGNSHGH HHHR     N   P     P PP   K G    +Q+Q     QN    SLPY
Sbjct: 1   MGNSHGHGHHHRKNPIHNGANPKTEAAPPPPAVNKHGLQPLNQNQNQDLKQNTMVTSLPY 60

Query: 58  AHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVS 117
           AHVD SLRALAGQAEGFGR AIGG HG LYHVTTL+DDGPGSLR+GCR KEPLWIVFEVS
Sbjct: 61  AHVDSSLRALAGQAEGFGRFAIGGFHGQLYHVTTLSDDGPGSLRDGCRKKEPLWIVFEVS 120

Query: 118 GTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGP----DVDA 173
           GTIHL S+LSVSSYKTIDGRGQ++KLTGKGLRLKECEHVI+CNLEFEGG+G     DVDA
Sbjct: 121 GTIHLHSYLSVSSYKTIDGRGQQIKLTGKGLRLKECEHVIVCNLEFEGGRGXXRGHDVDA 180

Query: 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDIT+SRCHFS HDKTMLIGADPSH+ DR
Sbjct: 181 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHIGDR 240

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
           CIRVTIHHCFFDGT QRHPRVR+ KVHLYNNYTRNWGIYAVCASV++QIYSQ NIYEA Q
Sbjct: 241 CIRVTIHHCFFDGTHQRHPRVRFGKVHLYNNYTRNWGIYAVCASVEAQIYSQYNIYEAAQ 300

Query: 294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-- 351
           KK+AFKYLTEKA+DKEEA +  IRSEGD      +AGLM+E  EH  F+P E+Y TWT  
Sbjct: 301 KKVAFKYLTEKAADKEEAVSGFIRSEGDFFVSGTQAGLMSETVEHCTFNPREYYPTWTVE 360

Query: 352 --------LLQRCTGWQDVQCPAD 367
                   +LQ  TGWQ V  P D
Sbjct: 361 APTDALKNVLQHYTGWQCVPRPTD 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866065|emb|CAN80964.1| hypothetical protein VITISV_005608 [Vitis vinifera]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/426 (65%), Positives = 301/426 (70%), Gaps = 68/426 (15%)

Query: 1   MGNSHGHHHHHRNEANSYFPHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHV 60
           MG +HG        + ++  H TP  T  P    P+      P+   + N +  LPYAHV
Sbjct: 1   MGGAHG------RCSGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMS-CLPYAHV 53

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
           D +LRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLR+GCR KEPLWIVFEVSG I
Sbjct: 54  DSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGII 113

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKS 180
           HL S+L+VSSYKTIDGRGQR+KLTGKGLRLKECEHVIICNLEFEGG+GPDVD IQIKP S
Sbjct: 114 HLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNS 173

Query: 181 KHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIH 240
           KHIWIDRCSLRD+DDGLIDITR STDIT+SRCHFS HDKTMLIGADPSH  DRCIRVTIH
Sbjct: 174 KHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIH 233

Query: 241 HCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           HCFFDGTRQRHPRVRY KVHLYNNYTRNWGIYAVCASV+SQIYSQCNIYEAG KK+AFKY
Sbjct: 234 HCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKY 293

Query: 301 LTE-------------------------------------------------KASDKEEA 311
           LTE                                                 KA+DKEE 
Sbjct: 294 LTEKLLCYSVADYLDMNAYLPPYSWVSXMPVEHGCRPMVDVEGIPPIIYHLVKAADKEEE 353

Query: 312 RTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT----------LLQRCTGWQD 361
           RT C+RSEGDL     +AGLM  A E  MFHP E Y TWT          +L  CTGWQ 
Sbjct: 354 RTGCLRSEGDLFINGTQAGLMTVASE--MFHPREFYPTWTVEAPSDALKQVLHHCTGWQC 411

Query: 362 VQCPAD 367
           V  PAD
Sbjct: 412 VPRPAD 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157674317|gb|ABV60263.1| pectate lyase 1 [Hevea brasiliensis]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 23/358 (6%)

Query: 20  PHQTPTPTPPPFKFGPSDHHQHQPAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAI 79
           P Q P+   PP    PS                ++LPYAHVDC+LRALAGQAEGFGR AI
Sbjct: 47  PPQVPSSAQPPHNQTPS-------------TMVITLPYAHVDCNLRALAGQAEGFGRHAI 93

Query: 80  GGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQ 139
           GG+ GPLYHVT+L DDGPGSLR+GCR KEPLWIVFEVSGTIHLRS LSVSSYKTIDGRGQ
Sbjct: 94  GGVRGPLYHVTSLLDDGPGSLRDGCRRKEPLWIVFEVSGTIHLRSFLSVSSYKTIDGRGQ 153

Query: 140 RVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199
            VKLTGKGLRLKECEHVIICNLE EGG+G DVD IQIKPKSKHIWIDR SLRDYDDGLID
Sbjct: 154 TVKLTGKGLRLKECEHVIICNLELEGGRGDDVDGIQIKPKSKHIWIDRRSLRDYDDGLID 213

Query: 200 ITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKV 259
           ITRESTDIT+SRC FS HDKT+LIG  P   +DR IRVTIHHCFFDGTRQRHPRVR+AKV
Sbjct: 214 ITRESTDITISRCRFSQHDKTILIGGHPPQSSDRYIRVTIHHCFFDGTRQRHPRVRFAKV 273

Query: 260 HLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSE 319
           HLYNNYTRNWGIYAVCASV+SQIYSQCNIY AG+KK+AFKYLTEKA DKE+A T  ++SE
Sbjct: 274 HLYNNYTRNWGIYAVCASVESQIYSQCNIYGAGEKKVAFKYLTEKAPDKEKAGTGYVKSE 333

Query: 320 GDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTL----------LQRCTGWQDVQCPAD 367
           GDL +   +AGLM+E+GEH  FHPSE+Y  WT+          LQ CTGWQ V  PAD
Sbjct: 334 GDLFTTGTQAGLMSESGEHCKFHPSEYYPEWTVEAPTAKLKKTLQHCTGWQCVPRPAD 391

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
TAIR|locus:2100651	331	AT3G55140 [Arabidopsis thalian	0.855	0.948	0.756	6e-135
TAIR|locus:2074999	378	AT3G09540 [Arabidopsis thalian	0.880	0.854	0.677	9.2e-123
TAIR|locus:2204232	368	AT1G30350 [Arabidopsis thalian	0.648	0.646	0.408	1.2e-42
TAIR|locus:2086656	412	AT3G27400 [Arabidopsis thalian	0.408	0.364	0.416	4.2e-40
TAIR|locus:2082667	501	PMR6 "powdery mildew resistant	0.689	0.504	0.396	2.3e-39
TAIR|locus:2179949	518	AT5G04310 [Arabidopsis thalian	0.422	0.299	0.395	2e-36
TAIR|locus:2005487	470	AT4G13710 [Arabidopsis thalian	0.411	0.321	0.412	6.5e-36
TAIR|locus:2093761	452	AT3G24230 [Arabidopsis thalian	0.474	0.384	0.366	5.3e-35
TAIR|locus:2162182	392	AT5G55720 [Arabidopsis thalian	0.607	0.568	0.385	4.6e-34
TAIR|locus:2161992	432	AT5G63180 [Arabidopsis thalian	0.411	0.349	0.374	1.6e-32

TAIR|locus:2100651 AT3G55140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
 Identities = 245/324 (75%), Positives = 275/324 (84%)

Query:    54 SLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIV 113
             SLPYA  DCSLRALAG+AEGFGR A+GGLHG LY VT+LADDGPG+LREG R KEPLWIV
Sbjct:     3 SLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLWIV 62

Query:   114 FEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDA 173
             F VSGTI+L S+LSVSSYKTIDGRGQR+KLTGKG+RLKECEH+IICNLEFEGG+G DVD 
Sbjct:    63 FAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDVDG 122

Query:   174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
             IQIKPKS+HIWIDRCSLRDYDDGLIDITR+STDITVSRC+F+ HDKTMLIGADPSHV DR
Sbjct:   123 IQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVEDR 182

Query:   234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293
             CIRVTIHHCFFDGTRQR PR+R+ KVHLYNNYTRNWGIYAVCASV++Q++SQCNIYEAG 
Sbjct:   183 CIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEAGV 242

Query:   294 KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-- 351
             KK  F+Y +EKA+DKEEART  +RSE DL     +  LM  A E  +FHPSEHY TWT  
Sbjct:   243 KKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSLMTGASEECVFHPSEHYPTWTVE 302

Query:   352 --------LLQRCTGWQDVQCPAD 367
                     ++Q CTGWQ +  P+D
Sbjct:   303 PPSETLKQIMQICTGWQSLSRPSD 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2074999 AT3G09540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 227/335 (67%), Positives = 273/335 (81%)

Query:    43 PAAQFQNNSTMSLPYAHVDCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRE 102
             P++   ++ T+  PY HVD SLR+LAG+AEGFGR A+GGL+GP+ HVT+LAD+GPGSLRE
Sbjct:    40 PSSPSDHHMTVG-PYCHVDSSLRSLAGKAEGFGRAAVGGLNGPICHVTSLADEGPGSLRE 98

Query:   103 GCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLE 162
              C+  EPLWIVF+VSGTI+L S ++VSS+ T+DGRGQ+VK+TGKGLRLKECE+VIICNLE
Sbjct:    99 ACKRPEPLWIVFDVSGTINLSSFVNVSSHTTVDGRGQKVKITGKGLRLKECENVIICNLE 158

Query:   163 FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTML 222
             FEGG GPD DAIQIKPKS +IWIDRCSL++Y DGLIDITRESTDITVSRCHF +H+KTML
Sbjct:   159 FEGGVGPDADAIQIKPKSHNIWIDRCSLKNYYDGLIDITRESTDITVSRCHFMNHNKTML 218

Query:   223 IGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQI 282
             IGAD SHV DRCIRVTIHHCFFDGTRQRHPRVR+AKVHL+NNYTR+W IYAV A V+SQI
Sbjct:   219 IGADTSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLFNNYTRHWAIYAVGAGVESQI 278

Query:   283 YSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFH 342
             +SQCNIYEAG+KK  FKY+TEKA+DKE+     +RSEGDL     K+ L ++ GE  +F 
Sbjct:   279 HSQCNIYEAGEKKTVFKYITEKAADKEKPGAGFVRSEGDLLLNGAKSCL-SQGGERYVFS 337

Query:   343 PSEHYYTWTL----------LQRCTGWQDVQCPAD 367
             P +HY  WT+          L+  TGWQ++  P D
Sbjct:   338 PIQHYSEWTVESPTDILKNYLKHSTGWQNLPLPLD 372

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 102/250 (40%), Positives = 151/250 (60%)

Query:    65 RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
             +ALA  A G+G+ AIGG +GP+Y VT  +D+     PG+LR      +PLWI F     I
Sbjct:    53 QALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVI 112

Query:   121 HLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEHVIICNLEFEGGK----GPDVDAIQ 175
              L+S L ++SYKTIDGRG +V++  G  LR+++ +HVII  +     K    G D D I+
Sbjct:   113 VLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIR 172

Query:   176 IKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCI 235
             +  +S H+WID C L    DGLID+   ST +T+S  +F+ HDK ML+G D S++ D+ +
Sbjct:   173 VF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDM 231

Query:   236 RVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
             RVTI  + F  G  +R PRVR    H+ NN    W +YA+  S +  I+S+ N + A +K
Sbjct:   232 RVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEK 291

Query:   295 KMAFKYLTEK 304
             + + K +T++
Sbjct:   292 RSS-KQVTKR 300

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
 Identities = 65/156 (41%), Positives = 87/156 (55%)

Query:   170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
             D DA+ I    KH+WID CSL + DDGLID    ST IT+S  H + HDK ML+G   S+
Sbjct:   210 DGDAVAIFG-GKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSY 268

Query:   230 VADRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCN 287
               D+ ++VTI  +H F +G  QR PR R+   H+ NN   +W +YA+  S    IYSQ N
Sbjct:   269 TQDKNMQVTIAFNH-FGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGN 327

Query:   288 IYEAGQKKMAFKYLTEKASDKEEARTDCI-RSEGDL 322
              + A   +   K +T+     E    D   RSEGD+
Sbjct:   328 RFLAPNTRFN-KEVTKHEDAPESKWRDWNWRSEGDM 362

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 109/275 (39%), Positives = 149/275 (54%)

Query:    67 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGP-----GSLREGCRMKEPLWIVFEVSGTIH 121
             LA  + GFG   +GG +G +Y VT  +D+ P     G+LR G   +EPLWIVF  +  I 
Sbjct:    99 LADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPGTLRYGVIQEEPLWIVFSSNMLIR 158

Query:   122 LRSHLSVSSYKTIDGRGQRVKLTGKG-LRLKECEHVIICNLE---------FEGGKGPDV 171
             L+  L ++SYKT+DGRG  V +TG G L L+  +H+II NL          FE     D 
Sbjct:   159 LKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDG 218

Query:   172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA 231
             D I I    K IW+D CS+    DGLID    ST IT+S  +F+ HD+ ML+G D ++  
Sbjct:   219 DGISIFGSQK-IWVDHCSMSHCTDGLIDAVMGSTAITISNNYFTHHDEVMLLGHDDNYAP 277

Query:   232 DRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289
             D  ++VTI  +H F  G  QR PR R   +H+ NN    W +YA+  S +  I SQ N Y
Sbjct:   278 DTGMQVTIAFNH-FGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRY 336

Query:   290 EAGQKKMAFKYLTEKASDKEEARTDCI--RSEGDL 322
              A     A K +T++   K++        R+EGDL
Sbjct:   337 SAPSDPSA-KEVTKRVDSKDDGEWSNWNWRTEGDL 370

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0042547 "cell wall modification involved in multidimensional cell growth" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
 Identities = 64/162 (39%), Positives = 91/162 (56%)

Query:   165 GGKG-PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLI 223
             G +G  D D I +   S HIW+D CSL    DGLID+   ST +T+S  +FS HD+ ML+
Sbjct:   235 GFRGVSDGDGISVSA-SHHIWVDHCSLGYCADGLIDVILASTAVTISNNYFSHHDEVMLL 293

Query:   224 GADPSHVADRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQ 281
             G D  + AD+ ++VTI  +H F +G  QR PR R+  +H+ NN    W +YA+  S    
Sbjct:   294 GHDDRYTADKGMQVTIAFNH-FGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPT 352

Query:   282 IYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCI-RSEGDL 322
             I SQ N Y A     A K +T++    E+  +    R+EGD+
Sbjct:   353 INSQGNRYTAPIDPNA-KEVTKRVDSNEKHWSGWNWRTEGDV 393

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
 Identities = 64/155 (41%), Positives = 89/155 (57%)

Query:   170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
             D DA+ I   S HIWID  SL    DGL+D    ST ITVS  HF+ H++ ML+G   S+
Sbjct:   268 DGDAVSIFGSS-HIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSY 326

Query:   230 VADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNI 288
               D+ ++VTI ++ F +G  QR PR R+   H+ NN   +W +YA+  S +  I SQ N 
Sbjct:   327 TKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNR 386

Query:   289 YEAGQKKMAFKYLTEKA-SDKEEARTDCIRSEGDL 322
             Y A   + A K +T++  +D  E +    RSEGDL
Sbjct:   387 YAAPMDRFA-KEVTKRVETDASEWKKWNWRSEGDL 420

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
 Identities = 67/183 (36%), Positives = 103/183 (56%)

Query:   147 GLRLKECE---HVIICNLEFEGG-KGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT 201
             GL + +C+   +V + +   + G +G  D DAI I   S HIWID  SL +  DGL+D+ 
Sbjct:   222 GLHIHDCKRTGNVTVRSSPSQAGFRGTADGDAINIFGSS-HIWIDHNSLSNCTDGLVDVV 280

Query:   202 RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVH 260
               ST IT+S  HF+ HD+ ML+G + S+  D+ ++VT+ ++ F +G  QR PR R+   H
Sbjct:   281 NGSTAITISNNHFTHHDEVMLLGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHGYFH 340

Query:   261 LYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCI-RSE 319
             + NN   +W +YA+  S +  I SQ N + A  K  + K +T++   K     +   RSE
Sbjct:   341 VVNNDYTHWKMYAIGGSANPTINSQGNRF-AAPKNHSAKEVTKRLDTKGNEWMEWNWRSE 399

Query:   320 GDL 322
              DL
Sbjct:   400 KDL 402

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2162182 AT5G55720 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 93/241 (38%), Positives = 130/241 (53%)

Query:    97 PGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLT-GKGLRLKECEH 155
             PG+LR      +PLWI+F+    I L+  L V+SYKTIDGRG  V++  G  L L +  +
Sbjct:   103 PGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSN 162

Query:   156 VIICNLEFEG------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE 203
             +II NL                G   D D I I  +S+ IWID C+L    DGLID    
Sbjct:   163 IIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNG 221

Query:   204 STDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLY 262
             STDIT+S  +  +H++ ML+G    +  DR +RVTI   +F +G  QR PR R+   H+ 
Sbjct:   222 STDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIV 281

Query:   263 NNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLT--EKASDKEEARTDCIRSEG 320
             NN  R+W +YA+  S +  I+SQ N++ A   +   K +T  E A   EE +    +SEG
Sbjct:   282 NNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFT-KEVTKRESADGDEEWKEWNWKSEG 340

Query:   321 D 321
             D
Sbjct:   341 D 341

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 58/155 (37%), Positives = 88/155 (56%)

Query:   170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
             D D + I   S H+W+D CSL + +DGLID  R ST IT+S  + + H+K ML+G   ++
Sbjct:   228 DGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTY 286

Query:   230 VADRCIRVTI--HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCN 287
               D+ ++VTI  +H F +G  QR PR R+   H+ NN   +W +YA+  S +  I SQ N
Sbjct:   287 EQDKNMQVTIAFNH-FGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGN 345

Query:   288 IYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
              + A     + +    + + ++E R    RSEGDL
Sbjct:   346 RFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDL 380

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VI0607	SubName- Full=Putative uncharacterized protein; (333 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00011207	hypothetical protein (558 aa)			•			•			0.930
	eugene3.00280097	RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)			•			•			0.929
	eugene3.00140126	hypothetical protein (514 aa)			•			•			0.929
	eugene3.00030462	hypothetical protein (580 aa)			•			•			0.928
	gw1.XIII.724.1	pectinesterase family protein (EC-3.1.1.11) (512 aa)			•			•			0.928
	fgenesh4_pm.C_LG_II000883	hypothetical protein (450 aa)			•			•			0.927
	estExt_fgenesh4_pm.C_LG_VII0457	pectinesterase family protein (EC-3.1.1.11) (340 aa)			•			•			0.927
	gw1.X.3259.1	pectinesterase family protein (EC-3.1.1.11) (555 aa)			•			•			0.926
	eugene3.00021342	hypothetical protein (514 aa)			•			•			0.926
	estExt_fgenesh4_pg.C_1450045	pectinesterase family protein (EC-3.1.1.11) (381 aa)			•			•			0.926

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	367
smart00656	190	smart00656, Amb_all, Amb_all domain	3e-68
COG3866	345	COG3866, PelB, Pectate lyase [Carbohydrate transpo	2e-43
pfam00544	200	pfam00544, Pec_lyase_C, Pectate lyase	2e-38

>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain

 Score =  212 bits (542), Expect = 3e-68
 Identities = 75/179 (41%), Positives = 99/179 (55%), Gaps = 13/179 (7%)

Query: 126 LSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG---GKGPDVDAIQIKPKSKH 182
           + ++S KTIDGRG +V++ G GL +K   +VII NL         G D DAI I   S +
Sbjct: 12  IIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG-SSN 70

Query: 183 IWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADR 233
           +WID  SL             DGLIDI   ST +T+S  +F +H K ML+G   S   D 
Sbjct: 71  VWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG 130

Query: 234 CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG 292
            +RVTI H +F   RQR PRVR+  VH+YNNY   W  YA+   + + I S+ N +EA 
Sbjct: 131 KMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190

>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism]

 Score =  153 bits (387), Expect = 2e-43
 Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 80  GGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL------RSHLSVSSYKT 133
           GG  G +  V T  D     L           ++  V GTI        +  + + S KT
Sbjct: 50  GGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKT 104

Query: 134 IDGRGQRVKLTGKGLRLKECEHVIICNLEFEG-GKG-PDVDAIQIKPKSKHIWIDRCSLR 191
           I G G    L G GL++++  +VII NL FEG  +G P+ DAI I     +IWID  +  
Sbjct: 105 IVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFS 164

Query: 192 DYD--------DGLIDITRESTDITVSRCHFSSHDKTMLIG-ADPSHVADRCIRVTIHHC 242
                      DGL+DI +++  IT+S   F  HDK+ L+G +D S+  D   +VTIHH 
Sbjct: 165 GGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHN 224

Query: 243 FFDGTRQRHPRVRYAKVHLYNNYTRNWGIY--AVCASVDSQIYSQCNIYEAGQKKMAF 298
           +F    QR PR+R+  VH+YNNY      +  A+     ++IY + N +E G + + F
Sbjct: 225 YFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGF 282

Length = 345

>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase

 Score =  135 bits (342), Expect = 2e-38
 Identities = 78/201 (38%), Positives = 105/201 (52%), Gaps = 23/201 (11%)

Query: 107 KEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKE-CEHVIICNLEFEG 165
           K+PL  V   + TI   + ++V + KTI GRG  V L   G+R+ +   +VII NL    
Sbjct: 1   KQPL--VITSNKTIDSLTKVNVGANKTIIGRGANVSLANIGIRITKNSSNVIIQNLRIHH 58

Query: 166 -----------GKGPDVDAIQIKPKSKHIWIDRCSLRDYD--------DGLIDITRESTD 206
                      G   D DAIQI   S +IWID CSL  ++        DGL+DI   ST 
Sbjct: 59  NIRVNPHHEGPGGAKDGDAIQID-NSGNIWIDHCSLSGHNFSDDDGSFDGLVDIKEGSTY 117

Query: 207 ITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYT 266
           +T+S C F++H K ML G   S+  D+ +RVT+ H +F+   QR PR RY   H+YNN  
Sbjct: 118 VTISNCLFTNHKKVMLFGHSDSNSQDKGMRVTLAHNYFNNVNQRMPRCRYGYFHVYNNLY 177

Query: 267 RNWGIYAVCASVDSQIYSQCN 287
            NW  YA   S +  I S+ N
Sbjct: 178 VNWFQYAFGGSQNGTILSEGN 198

This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	100.0
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	100.0
smart00656	190	Amb_all Amb_all domain.	100.0
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	99.2
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	98.93
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	98.37
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	98.23
PLN02218	431	polygalacturonase ADPG	98.2
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	98.17
PLN02218	431	polygalacturonase ADPG	98.13
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	98.11
PLN02793	443	Probable polygalacturonase	98.1
PLN03003	456	Probable polygalacturonase At3g15720	98.1
PLN02155	394	polygalacturonase	97.97
PLN03003	456	Probable polygalacturonase At3g15720	97.93
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	97.92
PLN03010	409	polygalacturonase	97.9
PLN02480	343	Probable pectinesterase	97.86
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	97.82
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	97.73
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	97.73
PLN03010	409	polygalacturonase	97.7
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.67
PLN02155	394	polygalacturonase	97.65
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.64
PLN02197	588	pectinesterase	97.64
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	97.59
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.58
PLN02793	443	Probable polygalacturonase	97.56
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.54
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	97.52
PLN02176	340	putative pectinesterase	97.44
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	97.21
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	97.18
PLN02773	317	pectinesterase	97.02
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	97.01
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	97.0
PLN02432	293	putative pectinesterase	96.99
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	96.99
smart00656	190	Amb_all Amb_all domain.	96.98
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	96.97
PLN02497	331	probable pectinesterase	96.83
PLN02304	379	probable pectinesterase	96.82
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	96.82
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	96.79
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	96.79
PLN02301	548	pectinesterase/pectinesterase inhibitor	96.75
PLN02682	369	pectinesterase family protein	96.74
PLN02665	366	pectinesterase family protein	96.73
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	96.7
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	96.66
PLN02314	586	pectinesterase	96.59
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	96.59
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	96.59
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	96.56
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	96.52
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	96.45
PLN02313	587	Pectinesterase/pectinesterase inhibitor	96.43
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	96.23
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	96.13
PLN02634	359	probable pectinesterase	96.12
PLN02916	502	pectinesterase family protein	96.07
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	95.84
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	95.72
PLN02671	359	pectinesterase	95.57
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	95.56
PRK10531	422	acyl-CoA thioesterase; Provisional	95.55
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	94.5
PF08480	198	Disaggr_assoc: Disaggregatase related; InterPro: I	94.39
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	92.9
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	90.96
COG4677	405	PemB Pectin methylesterase [Carbohydrate transport	83.3
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	82.68

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-61  Score=461.91  Aligned_cols=282  Identities=31%  Similarity=0.489  Sum_probs=237.4

Q ss_pred             ccccccCCcccccC-------CCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec------ceeEec
Q 017716           63 SLRALAGQAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVS  129 (367)
Q Consensus        63 ~~~ala~~a~Gfg~-------~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~------~~l~V~  129 (367)
                      +-|.| ...+|||+       +||||.+|++++|+|.+|     |..++.+.+|.++|+-++|+|+++      ..|.+.
T Consensus        27 nt~t~-~~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~  100 (345)
T COG3866          27 NTQTL-NSFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIG  100 (345)
T ss_pred             CCccc-ccccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeec
Confidence            44555 35788886       589999999999999999     999999999997777799999987      467788


Q ss_pred             cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCCCC--CCceEecCCCceEEEEceeeec--------CCCCceE
Q 017716          130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPD--VDAIQIKPKSKHIWIDRCSLRD--------YDDGLID  199 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~~d--~DaI~i~~~s~nVWIDHcsfs~--------~~Dglid  199 (367)
                      |||||+|.|..++|.|++|.|+.+.|||||||+|++-...|  .|+|+|+.+++|||||||+|..        ..||++|
T Consensus       101 sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~D  180 (345)
T COG3866         101 SNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVD  180 (345)
T ss_pred             cccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEE
Confidence            99999999999999999999999999999999999865444  4999997689999999999998        6899999


Q ss_pred             eecCCceEEEeCceecCCCceeEecCCCCC-CCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeecC
Q 017716          200 ITRESTDITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASV  278 (367)
Q Consensus       200 i~~~s~~VTIS~n~f~~H~k~~LiG~sd~~-~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~~  278 (367)
                      +++++++||||||+|++|+|++|+|++|+. ..|++.+||+|||||+|+.||+||+|||.+|||||||+....|++..++
T Consensus       181 ik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~i  260 (345)
T COG3866         181 IKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITI  260 (345)
T ss_pred             eccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEee
Confidence            999999999999999999999999999874 4567799999999999999999999999999999999976656555555


Q ss_pred             C--ceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeeccccccccccCCCCcccCCCCCCcccc-----
Q 017716          279 D--SQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-----  351 (367)
Q Consensus       279 ~--a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~~-----  351 (367)
                      +  |+|++|+|||+....+..+  +..      +...|||..+-+.+++++.....  ..++..|+|+.+|+|.-     
T Consensus       261 G~~AkiyvE~NyF~~~~~~~~f--~dt------~~~~GY~~~d~gsy~~~s~~~~~--~~~G~~w~ps~~Y~Ytvd~~~d  330 (345)
T COG3866         261 GTSAKIYVENNYFENGSEGLGF--LDT------KGTSGYANQDSGSYLNSSKSMSV--RAGGVTWNPSSYYSYTVDPPED  330 (345)
T ss_pred             ccceEEEEecceeccCCCCcee--eec------CCccceEEeccCceecccCCccc--ccCCccCCCCCCcccccCChHH
Confidence            5  9999999999998776554  211      11249999655666665443322  23458999999997655     


Q ss_pred             ---eeecccCCc
Q 017716          352 ---LLQRCTGWQ  360 (367)
Q Consensus       352 ---~~~~~ag~q  360 (367)
                         +|-+|||+-
T Consensus       331 Vks~Vt~yAGaG  342 (345)
T COG3866         331 VKSFVTNYAGAG  342 (345)
T ss_pred             hhhhhhccccce
Confidence               999999953

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=100.00  E-value=1.5e-52  Score=386.69  Aligned_cols=177  Identities=46%  Similarity=0.750  Sum_probs=158.4

Q ss_pred             EEEEeceEEEecceeEeccCcceeeeccceEEeCCcEEEe-eeccEEEeeeEEeCC----------C--CCCCCceEecC
Q 017716          112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGG----------K--GPDVDAIQIKP  178 (367)
Q Consensus       112 IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~gi~i~-~a~NVIIRnL~i~~g----------~--~~d~DaI~i~~  178 (367)
                      +||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+++. +++|||||||+|+..          .  ..+.|+|+|+ 
T Consensus         3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-   81 (200)
T PF00544_consen    3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-   81 (200)
T ss_dssp             EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred             EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence            3677999999999999999999999999999999999997 899999999999982          1  2578999998 


Q ss_pred             CCceEEEEceeeecC--------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCC
Q 017716          179 KSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR  250 (367)
Q Consensus       179 ~s~nVWIDHcsfs~~--------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R  250 (367)
                      +++|||||||+|+|+        .||++|++.++++||||||+|++|+|++|+|++|....|.+++||||||||+++.+|
T Consensus        82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R  161 (200)
T PF00544_consen   82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR  161 (200)
T ss_dssp             STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred             ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence            889999999999999        999999999999999999999999999999998877777779999999999999999


Q ss_pred             CCccccCeeEEEcceEECcccceeeecCCceEEEEceeE
Q 017716          251 HPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY  289 (367)
Q Consensus       251 ~Pr~r~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F  289 (367)
                      +||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus       162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            999999999999999999999999999999999999999

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>smart00656 Amb_all Amb_all domain

Probab=100.00  E-value=1.4e-48  Score=357.82  Aligned_cols=168  Identities=45%  Similarity=0.699  Sum_probs=158.5

Q ss_pred             ceeEeccCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecC-------
Q 017716          124 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDY-------  193 (367)
Q Consensus       124 ~~l~V~snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHcsfs~~-------  193 (367)
                      .+|.|+|||||+|+|++++|.|++|++++++|||||||+|+++..   .+.|+|+++ ++++||||||+|+|.       
T Consensus        10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~   88 (190)
T smart00656       10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD   88 (190)
T ss_pred             ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence            468899999999999999999999999989999999999998764   578999997 799999999999998       


Q ss_pred             --CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECccc
Q 017716          194 --DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI  271 (367)
Q Consensus       194 --~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~  271 (367)
                        .|+++|++.++++||||||+|.+|+|++|||++++...++.++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus        89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~  168 (190)
T smart00656       89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS  168 (190)
T ss_pred             CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence              899999999999999999999999999999999876656678999999999999999999999999999999999999


Q ss_pred             ceeeecCCceEEEEceeEecC
Q 017716          272 YAVCASVDSQIYSQCNIYEAG  292 (367)
Q Consensus       272 yai~~~~~a~i~~e~N~F~~g  292 (367)
                      |+++++.++++++|+|||++.
T Consensus       169 ~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      169 YAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             EeEecCCCcEEEEECeEEECC
Confidence            999999999999999999874

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=99.20  E-value=1.6e-09  Score=106.86  Aligned_cols=110  Identities=26%  Similarity=0.303  Sum_probs=70.0

Q ss_pred             HHHhhhcCCCeEEEEEeceEEEecceeEec-cCcceeeeccc-eEEe-------CCcEEEeeeccEEEeeeEEeCCCCCC
Q 017716          100 LREGCRMKEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFEGGKGPD  170 (367)
Q Consensus       100 Lr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~-snkTI~G~G~g-i~I~-------G~gi~i~~a~NVIIRnL~i~~g~~~d  170 (367)
                      |++|+++.+|...|+--.|+.+++..|.|. +++||.|.|.+ ..|.       +.+|.+. ++||.|++|+++...   
T Consensus         1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~~---   76 (314)
T TIGR03805         1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENTK---   76 (314)
T ss_pred             CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcCC---
Confidence            688999988877666678999888888887 89999998754 4443       2235553 777888888776532   


Q ss_pred             CCceEecCCCceEEEEceeeecC--------CCCceEeecCCceEEEeCceecC
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~--------~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      .+||.+. +++++-|++|.+.|.        .+| |.+ ..+.+++|.+|.++.
T Consensus        77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g  127 (314)
T TIGR03805        77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRG  127 (314)
T ss_pred             CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEEC
Confidence            2455554 455555555555432        233 333 235555555555543

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=98.93  E-value=1e-08  Score=104.34  Aligned_cols=193  Identities=16%  Similarity=0.221  Sum_probs=96.6

Q ss_pred             ecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEec------cCcceeee-ccceEEeCCc-EEEeeeccEEEee
Q 017716           89 VTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGKG-LRLKECEHVIICN  160 (367)
Q Consensus        89 VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~------snkTI~G~-G~gi~I~G~g-i~i~~a~NVIIRn  160 (367)
                      |++.++     |++||++..|...|+..+|+.+ ...|.+.      ..+||..+ ...+.|.|.. |+|. .+.++|.+
T Consensus         1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G   73 (425)
T PF14592_consen    1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG   73 (425)
T ss_dssp             E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred             CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence            566666     9999999888777777899997 3456652      46888887 4577888764 7776 79999999


Q ss_pred             eEEeCCCCCC---------C-----Cc--------------------eEe---cCCCceEEEEceeeecC--CCCceEee
Q 017716          161 LEFEGGKGPD---------V-----DA--------------------IQI---KPKSKHIWIDRCSLRDY--DDGLIDIT  201 (367)
Q Consensus       161 L~i~~g~~~d---------~-----Da--------------------I~i---~~~s~nVWIDHcsfs~~--~Dglidi~  201 (367)
                      |.|+.+....         .     +-                    ..+   .-.++|--||||.|..-  ..-+|-+.
T Consensus        74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~  153 (425)
T PF14592_consen   74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR  153 (425)
T ss_dssp             -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred             eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence            9998642100         0     00                    111   00134444699999752  22233332


Q ss_pred             -------cCCceEEEeCceecC-------CCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc--cCeeEEEcce
Q 017716          202 -------RESTDITVSRCHFSS-------HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNY  265 (367)
Q Consensus       202 -------~~s~~VTIS~n~f~~-------H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r--~G~~Hv~NN~  265 (367)
                             ....+-+|.+|+|..       ...++-||.+.....+  -+.++.+|||.+|.+-.=-++  -+...+.||.
T Consensus       154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt  231 (425)
T PF14592_consen  154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT  231 (425)
T ss_dssp             -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred             ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence                   124577899999984       3457788877543222  268999999999988754443  3666777777


Q ss_pred             EECcccceeeecCCceEEEEceeEec
Q 017716          266 TRNWGIYAVCASVDSQIYSQCNIYEA  291 (367)
Q Consensus       266 ~~n~~~yai~~~~~a~i~~e~N~F~~  291 (367)
                      |++.. -.+..|-|-.-.+++|+|..
T Consensus       232 f~es~-G~ltlRHGn~n~V~gN~FiG  256 (425)
T PF14592_consen  232 FRESQ-GSLTLRHGNRNTVEGNVFIG  256 (425)
T ss_dssp             EES-S-SEEEEEE-SS-EEES-EEEE
T ss_pred             EEecc-ceEEEecCCCceEeccEEec
Confidence            77653 23444444444446666654

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=98.37  E-value=1.7e-05  Score=81.53  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             hhHHHhhhcCC-CeEEEEEeceEEEecceeEeccCcceeeeccceE---EeCCc-EE-EeeeccEEEeeeEEeCCCC---
Q 017716           98 GSLREGCRMKE-PLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFEGGKG---  168 (367)
Q Consensus        98 GSLr~Ai~~~~-P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~---I~G~g-i~-i~~a~NVIIRnL~i~~g~~---  168 (367)
                      -.|++||++.. +...|.-..|+.. ...|.+.+++||.|.. +++   |.|.+ +. -..++||.|++|+|++...   
T Consensus        55 ~ALQaAIdaAa~gG~tV~Lp~G~Y~-~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~  132 (455)
T TIGR03808        55 RALQRAIDEAARAQTPLALPPGVYR-TGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP  132 (455)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCcee-cccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence            35999987643 3322233568773 4779999999999984 454   66554 22 2469999999999997542   


Q ss_pred             CCCCceEecCCCceEEEEceeeecC-CCCceEeecCCceEEEeCceecC
Q 017716          169 PDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       169 ~d~DaI~i~~~s~nVWIDHcsfs~~-~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      ....+|.+. +++++-|.+|+|.+. ..| |++. +++ ..|+.|.+..
T Consensus       133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~g  177 (455)
T TIGR03808       133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTITQ  177 (455)
T ss_pred             CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEec
Confidence            234578885 899999999999998 488 6673 455 6666666553

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=98.23  E-value=2.5e-05  Score=66.54  Aligned_cols=134  Identities=18%  Similarity=0.262  Sum_probs=89.4

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s  226 (367)
                      ||.+....++.|++.+|+..   ..+||.+. .+..+.|+.|+|.+...+ +.+. ...+++|++|.|.+...+..+-..
T Consensus         2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~   75 (158)
T PF13229_consen    2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS   75 (158)
T ss_dssp             CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred             EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence            57777788899999999985   35899997 677789999999995555 6664 458999999999987744444322


Q ss_pred             CCCCCCcceeEEEecceecCCCCCCCccc--cCeeEEEcceEECcccceeeecCCc--eEEEEceeEecCCc
Q 017716          227 PSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNYTRNWGIYAVCASVDS--QIYSQCNIYEAGQK  294 (367)
Q Consensus       227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r--~G~~Hv~NN~~~n~~~yai~~~~~a--~i~~e~N~F~~g~~  294 (367)
                              -.+++.+|.+.++..-.=.+.  ...+.+.||.+.+....++......  .+.+++|.|.....
T Consensus        76 --------~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~  139 (158)
T PF13229_consen   76 --------SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGG  139 (158)
T ss_dssp             --------CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESS
T ss_pred             --------CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcc
Confidence                    157888888877755433333  3457899999988776777666655  88889999987653

>PLN02218 polygalacturonase ADPG

Probab=98.20  E-value=0.00012  Score=75.45  Aligned_cols=100  Identities=20%  Similarity=0.329  Sum_probs=70.0

Q ss_pred             eeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCCC
Q 017716          152 ECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV  230 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~  230 (367)
                      .++||+|+||+|.... ....|||.+. .++||+|.+|.+..+.|- |.++.++.+|+|++|.+. +..++-||+--...
T Consensus       222 ~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g~~~  298 (431)
T PLN02218        222 KCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLGDDN  298 (431)
T ss_pred             ceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCCCCC
Confidence            4555555555555321 2357999997 899999999999988666 899999999999999985 34456788753221


Q ss_pred             -CCcceeEEEecceecCCCCCCCccc
Q 017716          231 -ADRCIRVTIHHCFFDGTRQRHPRVR  255 (367)
Q Consensus       231 -~d~~~~VT~hhN~f~~~~~R~Pr~r  255 (367)
                       .+.--+|++.++.|.++. +.=|++
T Consensus       299 ~~~~V~nV~v~n~~~~~t~-nGvRIK  323 (431)
T PLN02218        299 SKAFVSGVTVDGAKLSGTD-NGVRIK  323 (431)
T ss_pred             CCceEEEEEEEccEEecCC-cceEEe
Confidence             222247899998887653 344443

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=98.17  E-value=9.7e-05  Score=67.10  Aligned_cols=174  Identities=17%  Similarity=0.243  Sum_probs=99.6

Q ss_pred             hHHHhh--hcCCCeEEEEEeceEEEecceeEeccCcceeeeccceE-Ee--CC--cE-------EEee-ecc--EEEeee
Q 017716           99 SLREGC--RMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK-LT--GK--GL-------RLKE-CEH--VIICNL  161 (367)
Q Consensus        99 SLr~Ai--~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~-I~--G~--gi-------~i~~-a~N--VIIRnL  161 (367)
                      .|++||  .+....-+|+-..|++.++..|.+.++++|.|.|...+ +.  +.  .+       .+.. ..+  +-|+||
T Consensus        20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl   99 (225)
T PF12708_consen   20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL   99 (225)
T ss_dssp             HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred             HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence            499999  33334445566899999999999999999999976443 33  11  11       1111 122  449999


Q ss_pred             EEeCCCCC---CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEe------CceecCCCceeEecCCCCCCCC
Q 017716          162 EFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVS------RCHFSSHDKTMLIGADPSHVAD  232 (367)
Q Consensus       162 ~i~~g~~~---d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS------~n~f~~H~k~~LiG~sd~~~~d  232 (367)
                      +|......   ...+|.+. .++++||++|++.+.....+.+. ..+...+.      ++.|++..+             
T Consensus       100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------  164 (225)
T PF12708_consen  100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN-------------  164 (225)
T ss_dssp             EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred             EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence            99976532   24678886 78999999999998755556664 12222222      222222111             


Q ss_pred             cceeEEEecceecCCCCCCCcccc--CeeEEEcceEECcccceeeecCCceEEEEceeEecCC
Q 017716          233 RCIRVTIHHCFFDGTRQRHPRVRY--AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       233 ~~~~VT~hhN~f~~~~~R~Pr~r~--G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~  293 (367)
                         .+.+...++.....-   +..  -.+.+.||++.+....+|....+..+.+++|.|++..
T Consensus       165 ---~~~~~~~~~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~  221 (225)
T PF12708_consen  165 ---NVIVNNCIFNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD  221 (225)
T ss_dssp             ---EEEEECEEEESSSCS---EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred             ---EEEECCccccCCCce---eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence               111111112111111   111  2466777777775557777777777888888887643

...

>PLN02218 polygalacturonase ADPG

Probab=98.13  E-value=4.6e-05  Score=78.62  Aligned_cols=161  Identities=19%  Similarity=0.200  Sum_probs=106.3

Q ss_pred             eeEeccC--cceeeeccceE-----Ee-------C-CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEcee
Q 017716          125 HLSVSSY--KTIDGRGQRVK-----LT-------G-KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCS  189 (367)
Q Consensus       125 ~l~V~sn--kTI~G~G~gi~-----I~-------G-~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcs  189 (367)
                      .|.|...  =||+|+|..--     ..       . --|++.+++||.|++|+|+....+   .|.+. .+++|+|++.+
T Consensus       157 ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~  232 (431)
T PLN02218        157 NLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVV  232 (431)
T ss_pred             EEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEE
Confidence            3556443  69999984210     00       1 126788999999999999987543   57776 79999999999


Q ss_pred             eec-----CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCC-------CCCcc-cc
Q 017716          190 LRD-----YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RY  256 (367)
Q Consensus       190 fs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~-------R~Pr~-r~  256 (367)
                      +..     ..|| ||+ ..+.+|+|++|.|..-+-+.-|.+..       .+|++.++++.....       +.+.- ..
T Consensus       233 I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V  303 (431)
T PLN02218        233 VTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFV  303 (431)
T ss_pred             EeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceE
Confidence            864     6899 899 56899999999999888887776542       267777776632211       11100 01


Q ss_pred             CeeEEEcceEECccccee--e---e--cCCceEEEEceeEecCCcceeee
Q 017716          257 AKVHLYNNYTRNWGIYAV--C---A--SVDSQIYSQCNIYEAGQKKMAFK  299 (367)
Q Consensus       257 G~~Hv~NN~~~n~~~yai--~---~--~~~a~i~~e~N~F~~g~~~~v~~  299 (367)
                      -.++|.|+.+.+.. .++  -   +  +.-..|.+|+...++...+.+++
T Consensus       304 ~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Id  352 (431)
T PLN02218        304 SGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIID  352 (431)
T ss_pred             EEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeEEEEcccccEEEE
Confidence            13567777776642 333  1   1  12246777888888877776654

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=98.11  E-value=0.00024  Score=70.41  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=101.4

Q ss_pred             ccCcceeeeccceEEe---CCcEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCceEee
Q 017716          129 SSYKTIDGRGQRVKLT---GKGLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT  201 (367)
Q Consensus       129 ~snkTI~G~G~gi~I~---G~gi~i~~a~NVIIRnL~i~~g~~----~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~  201 (367)
                      .+++||.+.    +|.   +.+|.+.+++||+||++++.....    ...+||.+. .++++.|.+|.++...|--|.+ 
T Consensus        62 a~~VtI~~l----tI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-  135 (314)
T TIGR03805        62 SDDVTLSDL----AVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-  135 (314)
T ss_pred             eCCeEEEee----EEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-
Confidence            356666665    222   357888889999999999975422    236899997 8999999999999987755667 


Q ss_pred             cCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCC--------CccccCeeEEEcceEECcc---
Q 017716          202 RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--------PRVRYAKVHLYNNYTRNWG---  270 (367)
Q Consensus       202 ~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~--------Pr~r~G~~Hv~NN~~~n~~---  270 (367)
                      ..+++++|++|.+.+-.+++.+-.+.        ++.+.+|.+.++..-.        |.+....+.|+||.+.+..   
T Consensus       136 ~~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n  207 (314)
T TIGR03805       136 GQSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPN  207 (314)
T ss_pred             CCCCCeEEECCEEccCcceEEEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCC
Confidence            46889999999998777777665442        3566666665543211        1111134677777665321   


Q ss_pred             -------------cceeeecCCceEEEEceeEecCCcc
Q 017716          271 -------------IYAVCASVDSQIYSQCNIYEAGQKK  295 (367)
Q Consensus       271 -------------~yai~~~~~a~i~~e~N~F~~g~~~  295 (367)
                                   ..++-.....++.+++|.|......
T Consensus       208 ~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~  245 (314)
T TIGR03805       208 FAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTA  245 (314)
T ss_pred             CcccCCceecCCCCcEEEEEcccceEEECCEEeCCcce
Confidence                         1122223335788899999887654

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PLN02793 Probable polygalacturonase

Probab=98.10  E-value=0.00012  Score=75.68  Aligned_cols=103  Identities=22%  Similarity=0.353  Sum_probs=74.3

Q ss_pred             EEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716          148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s  226 (367)
                      |.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+-
T Consensus       203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl  279 (443)
T PLN02793        203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL  279 (443)
T ss_pred             EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence            44456777777777776543 3457999997 899999999999987776 8998899999999999853 335668874


Q ss_pred             CCC-CCCcceeEEEecceecCCCCCCCcc
Q 017716          227 PSH-VADRCIRVTIHHCFFDGTRQRHPRV  254 (367)
Q Consensus       227 d~~-~~d~~~~VT~hhN~f~~~~~R~Pr~  254 (367)
                      ... ....-.+|++.++.|.+.. +.=|+
T Consensus       280 g~~~~~~~V~nV~v~n~~~~~t~-~GirI  307 (443)
T PLN02793        280 GKSNSWSEVRDITVDGAFLSNTD-NGVRI  307 (443)
T ss_pred             cCcCCCCcEEEEEEEccEEeCCC-ceEEE
Confidence            221 1122247999999888764 34444

>PLN03003 Probable polygalacturonase At3g15720

Probab=98.10  E-value=0.00011  Score=76.31  Aligned_cols=103  Identities=24%  Similarity=0.450  Sum_probs=73.6

Q ss_pred             EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716          149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP  227 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd  227 (367)
                      .+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++++|+|++|.+.. ..++-||+-.
T Consensus       165 ~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg  241 (456)
T PLN03003        165 HISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLG  241 (456)
T ss_pred             EEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeecc
Confidence            3344566666666666532 3457999997 899999999999988777 8999999999999999863 3467788653


Q ss_pred             CCC-CCcceeEEEecceecCCCCCCCccc
Q 017716          228 SHV-ADRCIRVTIHHCFFDGTRQRHPRVR  255 (367)
Q Consensus       228 ~~~-~d~~~~VT~hhN~f~~~~~R~Pr~r  255 (367)
                      ... .+.--+|++.++.|.++. +.=|++
T Consensus       242 ~~g~~~~V~NV~v~n~~~~~T~-nGvRIK  269 (456)
T PLN03003        242 KDGETATVENVCVQNCNFRGTM-NGARIK  269 (456)
T ss_pred             CCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence            221 122348999999988764 333554

>PLN02155 polygalacturonase

Probab=97.97  E-value=8.1e-05  Score=75.98  Aligned_cols=102  Identities=18%  Similarity=0.346  Sum_probs=73.9

Q ss_pred             EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716          149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP  227 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd  227 (367)
                      .+..++||.|+||+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+--
T Consensus       172 ~~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g  248 (394)
T PLN02155        172 TLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLA  248 (394)
T ss_pred             EEECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccc
Confidence            3445677777777776532 3457999997 899999999999998886 8998899999999998873 3467788742


Q ss_pred             CC-CCCcceeEEEecceecCCCCCCCcc
Q 017716          228 SH-VADRCIRVTIHHCFFDGTRQRHPRV  254 (367)
Q Consensus       228 ~~-~~d~~~~VT~hhN~f~~~~~R~Pr~  254 (367)
                      .. ....-.+|++.++.|.+.. +.=|+
T Consensus       249 ~~~~~~~V~nV~v~n~~~~~t~-~GirI  275 (394)
T PLN02155        249 KELNEDGVENVTVSSSVFTGSQ-NGVRI  275 (394)
T ss_pred             ccCCCCcEEEEEEEeeEEeCCC-cEEEE
Confidence            21 1222248999999998753 33344

>PLN03003 Probable polygalacturonase At3g15720

Probab=97.93  E-value=0.00051  Score=71.38  Aligned_cols=138  Identities=14%  Similarity=0.205  Sum_probs=90.5

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L  222 (367)
                      |++.+++||.|++|+++....   =.|.+. .+++|.|++..+..     ..|| ||+ ..+++|+|.+|.|..-|-+.-
T Consensus       141 l~f~~~~nv~I~gitl~NSp~---w~i~i~-~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIa  214 (456)
T PLN03003        141 LKFRSCNNLRLSGLTHLDSPM---AHIHIS-ECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIA  214 (456)
T ss_pred             EEEEecCCcEEeCeEEecCCc---EEEEEe-ccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEE
Confidence            678899999999999998654   356776 78999999999864     5799 899 578999999999999888888


Q ss_pred             ecCCCCCCCCcceeEEEecceecCC-------CCCCCcc-ccCeeEEEcceEECcccceee-----ec--CCceEEEEce
Q 017716          223 IGADPSHVADRCIRVTIHHCFFDGT-------RQRHPRV-RYAKVHLYNNYTRNWGIYAVC-----AS--VDSQIYSQCN  287 (367)
Q Consensus       223 iG~sd~~~~d~~~~VT~hhN~f~~~-------~~R~Pr~-r~G~~Hv~NN~~~n~~~yai~-----~~--~~a~i~~e~N  287 (367)
                      +.+...       +|++-++.+...       ..+.... ..-.+++.|+.+.+.. .++.     ++  .-..|.+|+-
T Consensus       215 iksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~-nGvRIKT~~Gg~G~v~nItf~nI  286 (456)
T PLN03003        215 INSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTM-NGARIKTWQGGSGYARMITFNGI  286 (456)
T ss_pred             eCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCC-cEEEEEEeCCCCeEEEEEEEEeE
Confidence            775421       456655544221       1111000 0124678888877642 2321     11  1135666666


Q ss_pred             eEecCCcceeee
Q 017716          288 IYEAGQKKMAFK  299 (367)
Q Consensus       288 ~F~~g~~~~v~~  299 (367)
                      .+++...+.+.+
T Consensus       287 ~m~nV~~pI~Id  298 (456)
T PLN03003        287 TLDNVENPIIID  298 (456)
T ss_pred             EecCccceEEEE
Confidence            666655555543

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=97.92  E-value=0.00016  Score=74.01  Aligned_cols=97  Identities=22%  Similarity=0.406  Sum_probs=70.2

Q ss_pred             EEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716          149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP  227 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd  227 (367)
                      .+..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++|+|+++... +..++-||+-.
T Consensus       182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~-~ghGisiGSlG  258 (404)
T PLN02188        182 ALVECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCG-PGHGISVGSLG  258 (404)
T ss_pred             EEEccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEc-CCCcEEeCCCC
Confidence            3345666667777766432 2457999997 899999999999998885 899989999999999885 33467788732


Q ss_pred             CC-CCCcceeEEEecceecCCC
Q 017716          228 SH-VADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       228 ~~-~~d~~~~VT~hhN~f~~~~  248 (367)
                      .. ....--+|++.++.|.++.
T Consensus       259 ~~~~~~~V~nV~v~n~~~~~t~  280 (404)
T PLN02188        259 RYPNEGDVTGLVVRDCTFTGTT  280 (404)
T ss_pred             CCCcCCcEEEEEEEeeEEECCC
Confidence            11 1112247899999887763

>PLN03010 polygalacturonase

Probab=97.90  E-value=0.0015  Score=67.19  Aligned_cols=113  Identities=22%  Similarity=0.343  Sum_probs=67.1

Q ss_pred             eccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCC-C
Q 017716          153 CEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH-V  230 (367)
Q Consensus       153 a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~-~  230 (367)
                      ++||.|+||+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++++|.++... ...++-||+--.. .
T Consensus       188 ~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~  264 (409)
T PLN03010        188 CNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCG-PGHGISVGSLGADGA  264 (409)
T ss_pred             cccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCC
Confidence            344444444443321 2357999997 789999999999888666 889888877777766554 2235667764221 1


Q ss_pred             CCcceeEEEecceecCCCCCCCcccc---CeeEEEcceEECc
Q 017716          231 ADRCIRVTIHHCFFDGTRQRHPRVRY---AKVHLYNNYTRNW  269 (367)
Q Consensus       231 ~d~~~~VT~hhN~f~~~~~R~Pr~r~---G~~Hv~NN~~~n~  269 (367)
                      .+.--+|++.++.|.+.. +.=|++.   +...|.|=.|+|.
T Consensus       265 ~~~V~nV~v~n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI  305 (409)
T PLN03010        265 NAKVSDVHVTHCTFNQTT-NGARIKTWQGGQGYARNISFENI  305 (409)
T ss_pred             CCeeEEEEEEeeEEeCCC-cceEEEEecCCCEEEEEeEEEeE
Confidence            122247888888887653 3334432   2334444444443

>PLN02480 Probable pectinesterase

Probab=97.86  E-value=0.0016  Score=65.54  Aligned_cols=97  Identities=9%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccc-eEEeCC----------cEEEeeeccEEEee
Q 017716           99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQR-VKLTGK----------GLRLKECEHVIICN  160 (367)
Q Consensus        99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~g-i~I~G~----------gi~i~~a~NVIIRn  160 (367)
                      ||++||++.    ..+++|+-..|+.+  +.|.|   .+|+||.|.+.+ ..|.+.          .|.|. +++++++|
T Consensus        62 TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-a~~f~a~n  138 (343)
T PLN02480         62 SVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-APHFVAFG  138 (343)
T ss_pred             cHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-CCCEEEEe
Confidence            799999763    23556666779884  67778   367999998743 334321          25554 89999999


Q ss_pred             eEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCce
Q 017716          161 LEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (367)
Q Consensus       161 L~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dgli  198 (367)
                      |+|++..+      ...-||.+.-.+.++.+.+|.|.-..|=|+
T Consensus       139 LTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy  182 (343)
T PLN02480        139 ISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF  182 (343)
T ss_pred             eEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence            99998632      123466664468899999999976666554

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=97.82  E-value=0.0011  Score=63.74  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             hHHHhhhcCCCeEEEEEeceEEEecc----eeEeccCcceeee----cc----------ceEEeCCc-------EEEeee
Q 017716           99 SLREGCRMKEPLWIVFEVSGTIHLRS----HLSVSSYKTIDGR----GQ----------RVKLTGKG-------LRLKEC  153 (367)
Q Consensus        99 SLr~Ai~~~~P~~IVf~vsGtI~l~~----~l~V~snkTI~G~----G~----------gi~I~G~g-------i~i~~a  153 (367)
                      +|.+|++...|..+|.--.|+++-..    +|.+.+.+||.|.    |.          ++.|.|.+       +.|..+
T Consensus        17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~   96 (246)
T PF07602_consen   17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA   96 (246)
T ss_pred             HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence            58899988888777766789986543    4888888999985    22          22344433       455567


Q ss_pred             ccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC-CCCceEeec-----CCceEEEeCceecCCCce
Q 017716          154 EHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY-DDGLIDITR-----ESTDITVSRCHFSSHDKT  220 (367)
Q Consensus       154 ~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~-~Dglidi~~-----~s~~VTIS~n~f~~H~k~  220 (367)
                      ++..|+.++|+......+-||.|+ ++ +.-|..|+|..+ .+| |.+..     ...+++|+.|.+.....+
T Consensus        97 ~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~G-I~v~g~~~~~~i~~~vI~GN~~~~~~~G  166 (246)
T PF07602_consen   97 NNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREG-IFVTGTSANPGINGNVISGNSIYFNKTG  166 (246)
T ss_pred             CCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCcccc-EEEEeeecCCcccceEeecceEEecCcC
Confidence            888999999998743456788997 44 788899999986 555 43322     234577777776644333

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=97.73  E-value=0.0004  Score=59.05  Aligned_cols=129  Identities=16%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCc-eeEecC
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TMLIGA  225 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k-~~LiG~  225 (367)
                      +|.+...+++.|+|-+|+.    ...+|.+. ...++.|+.|.|++.. ..+.+. .+..++|++|.|.+... ++.+..
T Consensus        25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~-~~i~~~-~~~~~~i~~~~i~~~~~~gi~~~~   97 (158)
T PF13229_consen   25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNG-SGIYVS-GSSNITIENNRIENNGDYGIYISN   97 (158)
T ss_dssp             CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-S-EEEECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred             EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEcc-ceEEEE-ecCCceecCcEEEcCCCccEEEec
Confidence            5666666667777777776    35677776 5677888888887777 335553 67778888888876544 444432


Q ss_pred             CCCCCCCcceeEEEecceecCCCCCCCcccc-C--eeEEEcceEECcccceeeecCCce-EEEEceeE
Q 017716          226 DPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-A--KVHLYNNYTRNWGIYAVCASVDSQ-IYSQCNIY  289 (367)
Q Consensus       226 sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G--~~Hv~NN~~~n~~~yai~~~~~a~-i~~e~N~F  289 (367)
                             ....+++.+|.|.++....=.+.. .  .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus        98 -------~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~  158 (158)
T PF13229_consen   98 -------SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF  158 (158)
T ss_dssp             -------EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred             -------cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence                   012467777777776643333322 2  566788877776667776665555 77777776

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=97.73  E-value=0.0016  Score=65.04  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             eceEEEecceeEeccCcceeeeccceEEeCCc----EEEeeeccEEEeeeEEeCCCC---CCCCceEecCCCceEEEEce
Q 017716          116 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRC  188 (367)
Q Consensus       116 vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~g----i~i~~a~NVIIRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHc  188 (367)
                      .+|+.  .+.+.|+.-+|+.|. .++++.|.+    +++. +.+||||.|++|+...   .-+-+|-+...++...|.||
T Consensus        39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N  114 (408)
T COG3420          39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN  114 (408)
T ss_pred             Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence            34665  567888888999997 667787654    6665 9999999999997542   12457777667888899999


Q ss_pred             eeecCCCCceEeecCCceEEEeCceecCC--------Cc-eeEecCCC--------CCCCCcceeEEEecceecCCCCCC
Q 017716          189 SLRDYDDGLIDITRESTDITVSRCHFSSH--------DK-TMLIGADP--------SHVADRCIRVTIHHCFFDGTRQRH  251 (367)
Q Consensus       189 sfs~~~Dglidi~~~s~~VTIS~n~f~~H--------~k-~~LiG~sd--------~~~~d~~~~VT~hhN~f~~~~~R~  251 (367)
                      .+..+.-| |.+ .++.++-|--|.+..-        .- ..+|..++        ++..|.-.-=|-+||.|.++.-|.
T Consensus       115 ~l~~n~~G-i~l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~  192 (408)
T COG3420         115 DLIGNSFG-IYL-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRD  192 (408)
T ss_pred             cccccceE-EEE-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhh
Confidence            99998888 445 5677888888877631        11 22333332        222233222344777777777765


Q ss_pred             Ccc
Q 017716          252 PRV  254 (367)
Q Consensus       252 Pr~  254 (367)
                      -|+
T Consensus       193 ~Ry  195 (408)
T COG3420         193 LRY  195 (408)
T ss_pred             eee
Confidence            444

>PLN03010 polygalacturonase

Probab=97.70  E-value=0.0025  Score=65.49  Aligned_cols=155  Identities=20%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             cCcceeeeccceEEeCCc------EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee-----cCCCCce
Q 017716          130 SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR-----DYDDGLI  198 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~g------i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs-----~~~Dgli  198 (367)
                      .|++|.|.|   +|.|.|      |++.+++||.|++|+++....   =.|.+. .+++|.|++..+.     ...|| |
T Consensus       139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~---~~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-i  210 (409)
T PLN03010        139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPK---NHISIK-TCNYVAISKINILAPETSPNTDG-I  210 (409)
T ss_pred             cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCc---eEEEEe-ccccEEEEEEEEeCCCCCCCCCc-e
Confidence            578888864   577755      778899999999999998754   346776 7899999999885     46899 8


Q ss_pred             EeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCC-----CCCCCc-cccCeeEEEcceEECcccc
Q 017716          199 DITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT-----RQRHPR-VRYAKVHLYNNYTRNWGIY  272 (367)
Q Consensus       199 di~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~-----~~R~Pr-~r~G~~Hv~NN~~~n~~~y  272 (367)
                      |+ ..+++|+|++|.|..-+-+.-+.+...     .++|+.-.+...+-     ..+... -..-.+++.|+.+.+.. +
T Consensus       211 Di-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~  283 (409)
T PLN03010        211 DI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-N  283 (409)
T ss_pred             ee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-c
Confidence            99 568999999999999888888875421     13444434432210     001000 00124577888777642 2


Q ss_pred             eee--ecC-----CceEEEEceeEecCCcceeee
Q 017716          273 AVC--ASV-----DSQIYSQCNIYEAGQKKMAFK  299 (367)
Q Consensus       273 ai~--~~~-----~a~i~~e~N~F~~g~~~~v~~  299 (367)
                      ++.  ...     =..|.+|+-.+++...+.+.+
T Consensus       284 GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~  317 (409)
T PLN03010        284 GARIKTWQGGQGYARNISFENITLINTKNPIIID  317 (409)
T ss_pred             ceEEEEecCCCEEEEEeEEEeEEEecCCccEEEE
Confidence            321  111     135777777777777666654

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.67  E-value=0.00021  Score=70.97  Aligned_cols=105  Identities=28%  Similarity=0.498  Sum_probs=75.8

Q ss_pred             cEEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecC
Q 017716          147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA  225 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~  225 (367)
                      .+.+..++||.|++|+|+... ....|||.+. +++||.|++|.+..+.|. |.++.++.+|+|++|.+.. ..++-||+
T Consensus       117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS  193 (326)
T PF00295_consen  117 HIHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGS  193 (326)
T ss_dssp             SEEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEE
T ss_pred             EEEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeee
Confidence            366677899999999998653 2457999997 789999999999888666 8998888899999999963 44566775


Q ss_pred             CCCCCC-CcceeEEEecceecCCCCCCCccc
Q 017716          226 DPSHVA-DRCIRVTIHHCFFDGTRQRHPRVR  255 (367)
Q Consensus       226 sd~~~~-d~~~~VT~hhN~f~~~~~R~Pr~r  255 (367)
                      ...... ..--+|+|.++.|.++. |.-|++
T Consensus       194 ~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK  223 (326)
T PF00295_consen  194 EGSGGSQNDIRNVTFENCTIINTD-NGIRIK  223 (326)
T ss_dssp             ESSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred             ccCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence            422110 11137999999887753 444553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02155 polygalacturonase

Probab=97.65  E-value=0.0019  Score=66.16  Aligned_cols=138  Identities=12%  Similarity=0.154  Sum_probs=93.4

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L  222 (367)
                      |++.+++||.|++|+++....   =.|.+. .+++|.|++..+..     ..|| ||+ ..+++|+|++|.|..-+-+..
T Consensus       148 i~~~~~~nv~i~gitl~nSp~---w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa  221 (394)
T PLN02155        148 ISFNSAKDVIISGVKSMNSQV---SHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA  221 (394)
T ss_pred             eeEEEeeeEEEECeEEEcCCC---eEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence            677889999999999998653   346665 78999999999953     4688 898 568999999999998888888


Q ss_pred             ecCCCCCCCCcceeEEEecceecC-------CCCCCC-ccccCeeEEEcceEECcccceeee----c----CCceEEEEc
Q 017716          223 IGADPSHVADRCIRVTIHHCFFDG-------TRQRHP-RVRYAKVHLYNNYTRNWGIYAVCA----S----VDSQIYSQC  286 (367)
Q Consensus       223 iG~sd~~~~d~~~~VT~hhN~f~~-------~~~R~P-r~r~G~~Hv~NN~~~n~~~yai~~----~----~~a~i~~e~  286 (367)
                      ++....       +|++.++.+..       ...+.+ .-.+-.+.|.|+.+.+.. +++..    +    .=..|.+++
T Consensus       222 ik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n  293 (394)
T PLN02155        222 IGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD  293 (394)
T ss_pred             cCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence            875421       56666655532       112222 111225678888887642 34322    1    113566677


Q ss_pred             eeEecCCcceeee
Q 017716          287 NIYEAGQKKMAFK  299 (367)
Q Consensus       287 N~F~~g~~~~v~~  299 (367)
                      -.+++...+..++
T Consensus       294 i~m~~v~~pI~i~  306 (394)
T PLN02155        294 LVMKNVENPIIID  306 (394)
T ss_pred             EEEcCccccEEEE
Confidence            7777666666553

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.64  E-value=0.0021  Score=60.09  Aligned_cols=105  Identities=17%  Similarity=0.151  Sum_probs=57.8

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s  226 (367)
                      ||.+..+++++|++-.|+...    .||.+. .+.+..|..|.|+....| |.+ .++...+|+.|.|.+...++.+-.+
T Consensus        59 GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~G-I~l-~~s~~~~I~~N~i~~~~~GI~l~~s  131 (236)
T PF05048_consen   59 GIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYG-IYL-YGSSNNTISNNTISNNGYGIYLSSS  131 (236)
T ss_pred             EEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCce-EEE-eeCCceEEECcEEeCCCEEEEEEeC
Confidence            455555666666666666532    566665 444446677777666664 444 3455566777766655555555433


Q ss_pred             CCCCCCcceeEEEecceecCCCCCCCc-ccc-CeeEEEcceE
Q 017716          227 PSHVADRCIRVTIHHCFFDGTRQRHPR-VRY-AKVHLYNNYT  266 (367)
Q Consensus       227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr-~r~-G~~Hv~NN~~  266 (367)
                      .        +.++.+|.|.++..---. +.. ....+++|.|
T Consensus       132 ~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f  165 (236)
T PF05048_consen  132 S--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF  165 (236)
T ss_pred             C--------CCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence            1        356666666665332222 211 2356666666

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PLN02197 pectinesterase

Probab=97.64  E-value=0.0014  Score=70.15  Aligned_cols=150  Identities=20%  Similarity=0.323  Sum_probs=93.9

Q ss_pred             ccccccccCCcccccCCCCCCCCCceEEecCCCCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---c
Q 017716           61 DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---S  130 (367)
Q Consensus        61 d~~~~ala~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---s  130 (367)
                      ...++.|.  +.+.|+.+-||.++.+-..-..+.+|.|   |+++||++    +..|+||+-..|++  .+.+.|.   +
T Consensus       250 ~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~  325 (588)
T PLN02197        250 GADRKLMA--KAGRGANAGGGGGGKIKATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIY--NEQVTIPKKKN  325 (588)
T ss_pred             ccchhhhc--cCcccccccccccccccccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceE--EEEEEccCCCc
Confidence            34555564  3445556666665554322224556766   78899975    23466666677998  4667774   6


Q ss_pred             CcceeeeccceEEe-C-------Cc--------EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecC
Q 017716          131 YKTIDGRGQRVKLT-G-------KG--------LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDY  193 (367)
Q Consensus       131 nkTI~G~G~gi~I~-G-------~g--------i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~  193 (367)
                      |+||.|.|.+-+|. +       .+        +.+ .+++++.|||+|+...+. ..-|+.++-.+..+-+.+|.|.-.
T Consensus       326 ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~Gy  404 (588)
T PLN02197        326 NIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGY  404 (588)
T ss_pred             eEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEec
Confidence            89999998655543 1       11        333 489999999999986432 234554443578899999999765


Q ss_pred             CCCce-----------------EeecCCceEEEeCceec
Q 017716          194 DDGLI-----------------DITRESTDITVSRCHFS  215 (367)
Q Consensus       194 ~Dgli-----------------di~~~s~~VTIS~n~f~  215 (367)
                      .|=|+                 |+.-+....-+++|.|.
T Consensus       405 QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~  443 (588)
T PLN02197        405 QDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIV  443 (588)
T ss_pred             CcceEecCCCEEEEeeEEEecccccccceeeeeecCEEE
Confidence            55444                 44444444566666654

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=97.59  E-value=0.0035  Score=63.73  Aligned_cols=183  Identities=17%  Similarity=0.268  Sum_probs=133.6

Q ss_pred             ceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeeeccceEEeCC---cEEE---------ee
Q 017716           85 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRL---------KE  152 (367)
Q Consensus        85 ~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~---gi~i---------~~  152 (367)
                      ++|.+-=.+|     |.+||.+-..  |..+.+-++.+.+.|.|.+..+|+|+|+.+.|.+.   +|++         .+
T Consensus        47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g  119 (386)
T PF01696_consen   47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG  119 (386)
T ss_pred             EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence            3555665566     9999988663  45667888888899999999999999998888543   2544         24


Q ss_pred             eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCC
Q 017716          153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD  232 (367)
Q Consensus       153 a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d  232 (367)
                      -.+|.+.|++|....  ...|+-+. ...++.|.-|.|....--.++..   ....|..|.|..-+|++... +      
T Consensus       120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~-~------  186 (386)
T PF01696_consen  120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSR-G------  186 (386)
T ss_pred             eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecC-C------
Confidence            579999999999754  24567676 67899999999998877777774   56789999998888877532 1      


Q ss_pred             cceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeecCCceEEEEceeEecCC
Q 017716          233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       233 ~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~  293 (367)
                       ..++++.+|.|..+.-=.  +.-|...+.+|...+-. -.+-...  +-.+.+|.|....
T Consensus       187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~-Cf~l~~g--~g~i~~N~v~~~~  241 (386)
T PF01696_consen  187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECG-CFVLMKG--TGSIKHNMVCGPN  241 (386)
T ss_pred             -cceEEeeheeeeheEEEE--EecCCeEEecceecccc-eEEEEcc--cEEEeccEEeCCC
Confidence             236888999998775433  34588899999888753 2222222  3334788887654

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.58  E-value=0.0014  Score=61.18  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=97.8

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEec
Q 017716          145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG  224 (367)
Q Consensus       145 G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG  224 (367)
                      ..++.+..+.++.|++.+|+..    ..||.+. .+.++-|..|.++....| |.+.. +.+.+|++|.|.+...++++.
T Consensus        35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~~-s~~~~I~~N~i~~n~~GI~l~  107 (236)
T PF05048_consen   35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLMG-SSNNTISNNTISNNGYGIYLY  107 (236)
T ss_pred             CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEEc-CCCcEEECCEecCCCceEEEe
Confidence            3456777899999999999976    4789987 788899999999999988 66644 445599999999887777665


Q ss_pred             CCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECcccceee-ecCCceEEEEceeEec
Q 017716          225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVC-ASVDSQIYSQCNIYEA  291 (367)
Q Consensus       225 ~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~yai~-~~~~a~i~~e~N~F~~  291 (367)
                      .+.        ..++-+|.|. ....-=.+.. ....|.+|.+.+...+++. ........+.+|.|.+
T Consensus       108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~N  167 (236)
T PF05048_consen  108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFNN  167 (236)
T ss_pred             eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCccC
Confidence            443        3678888887 3333333332 5678999999887668887 5555667778999943

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PLN02793 Probable polygalacturonase

Probab=97.56  E-value=0.0031  Score=65.42  Aligned_cols=138  Identities=14%  Similarity=0.194  Sum_probs=92.3

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L  222 (367)
                      |++.+++||.|++|+++....+   .|.+. .+++|.|++.++..     ..|| ||+ ..+++|+|++|.|..-+-+..
T Consensus       180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa  253 (443)
T PLN02793        180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS  253 (443)
T ss_pred             EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence            6777899999999999987542   46676 78999999999963     5799 899 578999999999999888888


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCCC-------CCCc-cccCeeEEEcceEECccccee--ee---c--CCceEEEEce
Q 017716          223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAV--CA---S--VDSQIYSQCN  287 (367)
Q Consensus       223 iG~sd~~~~d~~~~VT~hhN~f~~~~~-------R~Pr-~r~G~~Hv~NN~~~n~~~yai--~~---~--~~a~i~~e~N  287 (367)
                      +....       -+|++.++.+.....       +... ...-.+.|.|+.+.+.. +++  -.   +  .-..|.+++-
T Consensus       254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni  325 (443)
T PLN02793        254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI  325 (443)
T ss_pred             ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence            76432       157776666532111       1100 00113677887777642 332  11   1  1235666777


Q ss_pred             eEecCCcceeee
Q 017716          288 IYEAGQKKMAFK  299 (367)
Q Consensus       288 ~F~~g~~~~v~~  299 (367)
                      ..++...+...+
T Consensus       326 ~m~nv~~pI~I~  337 (443)
T PLN02793        326 FMENVSNPIIID  337 (443)
T ss_pred             EEecCCceEEEE
Confidence            777766665554

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.54  E-value=0.00085  Score=66.58  Aligned_cols=133  Identities=19%  Similarity=0.306  Sum_probs=90.1

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L  222 (367)
                      |++.+++|+.|++|+++....+   .+.+. .+++|+|++.++..     ..|| ||+ ..+.+|+|.+|.|...+-+.-
T Consensus        95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia  168 (326)
T PF00295_consen   95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA  168 (326)
T ss_dssp             EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred             eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence            7888899999999999987653   57776 79999999999963     4789 899 468999999999998887777


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCCCCCCcccc-----C-------eeEEEcceEECcccceeee--cCC-----ceEE
Q 017716          223 IGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-----A-------KVHLYNNYTRNWGIYAVCA--SVD-----SQIY  283 (367)
Q Consensus       223 iG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-----G-------~~Hv~NN~~~n~~~yai~~--~~~-----a~i~  283 (367)
                      +.+...       +|++.+++|.+...    +..     +       .+.+.|+.+.+.. +++..  ..+     ..|.
T Consensus       169 iks~~~-------ni~v~n~~~~~ghG----isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~  236 (326)
T PF00295_consen  169 IKSGSG-------NILVENCTCSGGHG----ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNIT  236 (326)
T ss_dssp             ESSEEC-------EEEEESEEEESSSE----EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEE
T ss_pred             cccccc-------ceEEEeEEEecccc----ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceE
Confidence            654421       68888888865433    221     2       3456666665532 44322  112     2566


Q ss_pred             EEceeEecCCcceee
Q 017716          284 SQCNIYEAGQKKMAF  298 (367)
Q Consensus       284 ~e~N~F~~g~~~~v~  298 (367)
                      +|+...++...+...
T Consensus       237 f~ni~~~~v~~pi~i  251 (326)
T PF00295_consen  237 FENITMENVKYPIFI  251 (326)
T ss_dssp             EEEEEEEEESEEEEE
T ss_pred             EEEEEecCCceEEEE
Confidence            666666666555444

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=97.52  E-value=0.0038  Score=64.07  Aligned_cols=138  Identities=13%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeE
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML  222 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~L  222 (367)
                      |.+..++||.|++|+|+....+   .|.+. .+++|.|++.++..     ..|| ||+ ..+++|+|.+|.|..-+-+.-
T Consensus       158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa  231 (404)
T PLN02188        158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS  231 (404)
T ss_pred             EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence            5677899999999999987543   56676 78999999999864     5799 899 578999999999999888888


Q ss_pred             ecCCCCCCCCcceeEEEecceecCCC-------CCCCc-cccCeeEEEcceEECcccceeee---------cCCceEEEE
Q 017716          223 IGADPSHVADRCIRVTIHHCFFDGTR-------QRHPR-VRYAKVHLYNNYTRNWGIYAVCA---------SVDSQIYSQ  285 (367)
Q Consensus       223 iG~sd~~~~d~~~~VT~hhN~f~~~~-------~R~Pr-~r~G~~Hv~NN~~~n~~~yai~~---------~~~a~i~~e  285 (367)
                      +.+...       +|++-++......       .+..- -....+.+.|+.+.+.. +++..         +.-..|.+|
T Consensus       232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~  303 (404)
T PLN02188        232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE  303 (404)
T ss_pred             EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence            865421       4666555543211       11000 01124678888887653 33322         111367778


Q ss_pred             ceeEecCCcceeee
Q 017716          286 CNIYEAGQKKMAFK  299 (367)
Q Consensus       286 ~N~F~~g~~~~v~~  299 (367)
                      +-.+++...+.+++
T Consensus       304 ni~m~~v~~pI~i~  317 (404)
T PLN02188        304 NIVMNNVTNPIIID  317 (404)
T ss_pred             eEEecCccceEEEE
Confidence            88888777776654

>PLN02176 putative pectinesterase

Probab=97.44  E-value=0.0019  Score=64.87  Aligned_cols=104  Identities=14%  Similarity=0.292  Sum_probs=69.4

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--CC--------cEEEee
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKE  152 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~--G~--------gi~i~~  152 (367)
                      +.+|.|   |+++||++    +..+++|+-..|+.+  +.|.|.   +|+||.|.|.+-+|.  +.        .+.+ .
T Consensus        44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~  120 (340)
T PLN02176         44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y  120 (340)
T ss_pred             CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence            445665   78899965    223455555679984  667774   689999998655543  11        2455 4


Q ss_pred             eccEEEeeeEEeCCCC-------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017716          153 CEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (367)
Q Consensus       153 a~NVIIRnL~i~~g~~-------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglid  199 (367)
                      +++++.+||+|+....       ...-|+.+.-.+..+-+.+|.|.-..|=|++
T Consensus       121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~  174 (340)
T PLN02176        121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFD  174 (340)
T ss_pred             CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEe
Confidence            8999999999997532       1123444443578899999999766555544

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=97.21  E-value=0.0049  Score=63.77  Aligned_cols=162  Identities=18%  Similarity=0.222  Sum_probs=94.4

Q ss_pred             cceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC-------------------CCCCceEecCCCceEEEEceeeec
Q 017716          132 KTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG-------------------PDVDAIQIKPKSKHIWIDRCSLRD  192 (367)
Q Consensus       132 kTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~-------------------~d~DaI~i~~~s~nVWIDHcsfs~  192 (367)
                      +||.|.|....-...+|.+++|++|.|++.+|++...                   ....+|.+. .++++.|.+|+++.
T Consensus       122 LtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V~~N~I~g  200 (455)
T TIGR03808       122 LTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIVARNTIIG  200 (455)
T ss_pred             eEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEEECCEEEc
Confidence            3555555443334456788889999999999987520                   112346665 67789999999988


Q ss_pred             CCCCceEeecC-----------------------------------CceEEEeCceecCCCceeEecCCCCCC-------
Q 017716          193 YDDGLIDITRE-----------------------------------STDITVSRCHFSSHDKTMLIGADPSHV-------  230 (367)
Q Consensus       193 ~~Dglidi~~~-----------------------------------s~~VTIS~n~f~~H~k~~LiG~sd~~~-------  230 (367)
                      ..|+.|-+.+.                                   +.+++|+.|.++++.+-.+.+.+.++.       
T Consensus       201 ~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~~  280 (455)
T TIGR03808       201 ANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNSV  280 (455)
T ss_pred             cCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcEe
Confidence            88865555422                                   467888888888887544433322211       


Q ss_pred             CC-c--ceeEEE-ec-ceecCCCCCCCc-----ccc---Ce-eEEEcceEECcc-----------cceeeecCCceEEEE
Q 017716          231 AD-R--CIRVTI-HH-CFFDGTRQRHPR-----VRY---AK-VHLYNNYTRNWG-----------IYAVCASVDSQIYSQ  285 (367)
Q Consensus       231 ~d-~--~~~VT~-hh-N~f~~~~~R~Pr-----~r~---G~-~Hv~NN~~~n~~-----------~yai~~~~~a~i~~e  285 (367)
                      .+ |  .++.-| ++ +.+.++....-.     +.|   |. .-+-.|++.|..           ..+++..+|+.-.+-
T Consensus       281 ~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p~~~~~~~~~g~gi~~ead~~~~  360 (455)
T TIGR03808       281 SDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRPIGTAPDDDAGIGIYVEADTAVT  360 (455)
T ss_pred             eeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCCCCCCCCCCCCceeEEEEecceec
Confidence            11 1  122222 22 344443333332     223   33 355667766532           234566667777777


Q ss_pred             ceeEecCCc
Q 017716          286 CNIYEAGQK  294 (367)
Q Consensus       286 ~N~F~~g~~  294 (367)
                      +|+.|+.+.
T Consensus       361 ~n~~e~ap~  369 (455)
T TIGR03808       361 GNVVENAPS  369 (455)
T ss_pred             cceecCCcc
Confidence            888887764

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=97.18  E-value=0.023  Score=60.51  Aligned_cols=121  Identities=21%  Similarity=0.458  Sum_probs=81.0

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i  148 (367)
                      +.+|.|   ++++||++    +..++||+-..|+.+  +.|.|.   +|+||+|.|.+.+|. +.     +        +
T Consensus       235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~  312 (541)
T PLN02416        235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL  312 (541)
T ss_pred             CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence            345666   68888864    345677776789884  667773   689999998655543 21     1        3


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS  210 (367)
                      .+ .+++++.|||+|+...+. ..-|+.++-.+.++-+-+|.|.-..                 .|.+|+.-+.-.+-++
T Consensus       313 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  391 (541)
T PLN02416        313 AV-SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVFQ  391 (541)
T ss_pred             EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEEEe
Confidence            44 489999999999976432 2234444334788999999996543                 4556666666667777


Q ss_pred             CceecC
Q 017716          211 RCHFSS  216 (367)
Q Consensus       211 ~n~f~~  216 (367)
                      +|.|..
T Consensus       392 ~c~i~~  397 (541)
T PLN02416        392 ACNIVS  397 (541)
T ss_pred             ccEEEE
Confidence            787753

>PLN02773 pectinesterase

Probab=97.02  E-value=0.047  Score=54.46  Aligned_cols=114  Identities=16%  Similarity=0.279  Sum_probs=71.9

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEeC-C-----------------------c
Q 017716           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLTG-K-----------------------G  147 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~G-~-----------------------g  147 (367)
                      |+++||++    ...+++||-..|+.+  +.|.|.   .|+||.|.+..-+|.- .                       .
T Consensus        19 TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT   96 (317)
T PLN02773         19 TVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT   96 (317)
T ss_pred             CHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence            68888865    223455565679884  667773   5799999875444321 0                       1


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEE
Q 017716          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV  209 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTI  209 (367)
                      +.+ .+++++++||+|+..... ..-|+.+.-.+..+-+.+|.|.-..|                 |.+|+.-+.-.+-+
T Consensus        97 v~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG~VDFIFG~g~a~F  175 (317)
T PLN02773         97 VIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTALL  175 (317)
T ss_pred             EEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEeecccEEeeccEEEE
Confidence            233 489999999999976432 23344444357889999999865444                 44444444445556


Q ss_pred             eCceec
Q 017716          210 SRCHFS  215 (367)
Q Consensus       210 S~n~f~  215 (367)
                      .+|.|.
T Consensus       176 e~c~i~  181 (317)
T PLN02773        176 EHCHIH  181 (317)
T ss_pred             EeeEEE
Confidence            666664

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=97.01  E-value=0.037  Score=60.16  Aligned_cols=197  Identities=19%  Similarity=0.363  Sum_probs=114.5

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i  148 (367)
                      +.+|.|   ++++||++    +..++||+-..|++  .+.|.|.   .|+||+|.|.+-+|. +.     |        +
T Consensus       255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~  332 (670)
T PLN02217        255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV  332 (670)
T ss_pred             CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence            445666   68889975    23456666667988  4567775   478999998665553 21     1        3


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS  210 (367)
                      .+ .+++++.|||+|+...+. ..-|+-++-.+....+.+|.|.-..                 .|.+|+.-+.-.+-++
T Consensus       333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  411 (670)
T PLN02217        333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ  411 (670)
T ss_pred             EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence            33 489999999999976532 2345555445788999999996433                 5566666666677888


Q ss_pred             CceecCCC-----ceeEecCCCCCCCCcceeEEEecceecCCCCCC------------CccccCeeEEEcceEEC-----
Q 017716          211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH------------PRVRYAKVHLYNNYTRN-----  268 (367)
Q Consensus       211 ~n~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~------------Pr~r~G~~Hv~NN~~~n-----  268 (367)
                      +|.|.-..     ++.+--.+... .+...-+.|++|.+.....-.            |.-.+..+-+.|.++.+     
T Consensus       412 ~C~I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P~  490 (670)
T PLN02217        412 NCTLLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPPE  490 (670)
T ss_pred             ccEEEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcCc
Confidence            88886321     12221111000 111235788998776542111            22234566677766542     


Q ss_pred             -cccceeeecCCceEEEEceeEecCC
Q 017716          269 -WGIYAVCASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       269 -~~~yai~~~~~a~i~~e~N~F~~g~  293 (367)
                       |....-....+.-.+.|.+-+-.|.
T Consensus       491 GW~~W~~~~~~~t~~yaEY~n~GpGa  516 (670)
T PLN02217        491 GWQPWLGDFGLNTLFYSEVQNTGPGA  516 (670)
T ss_pred             ccCccCCCCCCCceEEEEeccccCCC
Confidence             3222111222334555766665553

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=97.00  E-value=0.0078  Score=63.67  Aligned_cols=120  Identities=23%  Similarity=0.450  Sum_probs=78.7

Q ss_pred             CCCCCh---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------
Q 017716           93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------  147 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G-----~g--------  147 (367)
                      +.+|.|   ++++||++.     ..+++|+-..|+++  +.|.|.   +|+||+|.|.+-+|. +     .+        
T Consensus       230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT  307 (529)
T PLN02170        230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT  307 (529)
T ss_pred             cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence            445655   788999732     23666666789984  667773   799999998665553 2     11        


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEE
Q 017716          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV  209 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTI  209 (367)
                      +.+ .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-..|                 |.+|+.-+.-..-+
T Consensus       308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avF  386 (529)
T PLN02170        308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVF  386 (529)
T ss_pred             EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceecccceEEE
Confidence            333 489999999999986432 23444444357889999999975544                 44555555555666


Q ss_pred             eCceec
Q 017716          210 SRCHFS  215 (367)
Q Consensus       210 S~n~f~  215 (367)
                      ++|.|.
T Consensus       387 q~C~I~  392 (529)
T PLN02170        387 QSCNIA  392 (529)
T ss_pred             eccEEE
Confidence            666664

>PLN02432 putative pectinesterase

Probab=96.99  E-value=0.009  Score=58.95  Aligned_cols=111  Identities=15%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe----CC------cEEEeeeccEEEeee
Q 017716           99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----GK------GLRLKECEHVIICNL  161 (367)
Q Consensus        99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~----G~------gi~i~~a~NVIIRnL  161 (367)
                      |+++||++-    ..+++|+-..|+.  .+.|.|   .+|+||.|.+..-++.    +.      .+.+ .+++++++||
T Consensus        25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl  101 (293)
T PLN02432         25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL  101 (293)
T ss_pred             CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence            688888652    2345555567888  466777   3789999997655543    11      2444 4899999999


Q ss_pred             EEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          162 EFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       162 ~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      +|+...+...-|+.+.-.+.++.+.+|.|.-..|=|++-   ...--+.+|+|+
T Consensus       102 t~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~  152 (293)
T PLN02432        102 TIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE  152 (293)
T ss_pred             EEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence            999865433445555435788999999998777776642   223444555555

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=96.99  E-value=0.049  Score=57.43  Aligned_cols=152  Identities=17%  Similarity=0.366  Sum_probs=94.3

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i  148 (367)
                      +.+|.|   |+++||++    +..+++|+-..|++  .+.|.|.   +|+||+|.|.+-+|. +.     +        +
T Consensus       202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv  279 (509)
T PLN02488        202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV  279 (509)
T ss_pred             CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence            345655   68889865    23356666677988  4667774   689999998665554 21     1        2


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS  210 (367)
                      .+ .++++|.|||+|+...+. ..-|+.++-.+....+.+|.|.-..                 .|.+|+.-+.-.+-++
T Consensus       280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq  358 (509)
T PLN02488        280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ  358 (509)
T ss_pred             EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence            33 478999999999976432 2455655545788999999996543                 4556666666667788


Q ss_pred             CceecCCC-----ceeEecCCCCCCCCcceeEEEecceecCCC
Q 017716          211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       211 ~n~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~  248 (367)
                      +|.|....     ++.+--.+-.. .+...-+.||+|.+....
T Consensus       359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~  400 (509)
T PLN02488        359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASS  400 (509)
T ss_pred             ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCC
Confidence            88886321     22222111100 111124788888776544

>smart00656 Amb_all Amb_all domain

Probab=96.98  E-value=0.016  Score=53.38  Aligned_cols=132  Identities=18%  Similarity=0.155  Sum_probs=83.3

Q ss_pred             cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC-----CCCC-ceEecCCCceEEEEceeeecCCCCceEeecC
Q 017716          130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG-----PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRE  203 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~-----~d~D-aI~i~~~s~nVWIDHcsfs~~~Dglidi~~~  203 (367)
                      .|++|.+........+.+|.+.+++||+|.+.+|..+..     ...| .+.+..++.+|=|-.|.|....-+++--..+
T Consensus        45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d  124 (190)
T smart00656       45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD  124 (190)
T ss_pred             eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence            477777753322233557888889999999999997621     1134 4456546788888888887654444433222


Q ss_pred             C------ceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECc
Q 017716          204 S------TDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW  269 (367)
Q Consensus       204 s------~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~  269 (367)
                      .      -.||+.+|+|.+..     +..+. .  |.-.+=+-+|+|.+.....--++. +++.+.||||++.
T Consensus       125 ~~~~~~~~~vT~h~N~~~~~~-----~R~P~-~--r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      125 SDTDDGKMRVTIAHNYFGNLR-----QRAPR-V--RFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             CccccccceEEEECcEEcCcc-----cCCCc-c--cCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence            2      26999999997532     11111 0  111567778999887644333333 5799999999863

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=96.97  E-value=0.059  Score=57.21  Aligned_cols=121  Identities=20%  Similarity=0.388  Sum_probs=79.8

Q ss_pred             CCCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------c
Q 017716           92 LADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------G  147 (367)
Q Consensus        92 l~d~gpG---SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------g  147 (367)
                      .+.+|.|   |+++||++-    ..+++|+-..|+++  +.|.|.   +|+||+|.|.+-++. +.             .
T Consensus       222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT  299 (530)
T PLN02933        222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT  299 (530)
T ss_pred             ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence            3445665   688898652    23556666679985  667774   688999998654443 11             1


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEE
Q 017716          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV  209 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTI  209 (367)
                      +.+ .+++++.|||+|+...+. ..-|+.++-.+..+-+.+|.|.-..                 .|.+|+.-+.-..-+
T Consensus       300 ~~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a~avF  378 (530)
T PLN02933        300 VGV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVF  378 (530)
T ss_pred             EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCceEEE
Confidence            334 489999999999976432 2344544435788999999997544                 455555555556667


Q ss_pred             eCceec
Q 017716          210 SRCHFS  215 (367)
Q Consensus       210 S~n~f~  215 (367)
                      ++|.|.
T Consensus       379 q~C~i~  384 (530)
T PLN02933        379 QNCSLY  384 (530)
T ss_pred             eccEEE
Confidence            777775

>PLN02497 probable pectinesterase

Probab=96.83  E-value=0.1  Score=52.41  Aligned_cols=98  Identities=12%  Similarity=0.215  Sum_probs=65.2

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eC---------CcEEEeeeccEEEeee
Q 017716           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TG---------KGLRLKECEHVIICNL  161 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G---------~gi~i~~a~NVIIRnL  161 (367)
                      |+++||++    +..+++|+-..|+.  ++.|.|.   +++||.|.|.+-++ ..         ..+.+ .+++++.+||
T Consensus        46 TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl  122 (331)
T PLN02497         46 TIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI  122 (331)
T ss_pred             CHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence            68888865    23445555567988  4667773   78999999754333 21         12444 4899999999


Q ss_pred             EEeCCCCC--------CCCceEecCCCceEEEEceeeecCCCCceE
Q 017716          162 EFEGGKGP--------DVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (367)
Q Consensus       162 ~i~~g~~~--------d~DaI~i~~~s~nVWIDHcsfs~~~Dglid  199 (367)
                      +|+.....        ..-|+.+.-.+.++-+.+|.|.-..|=|++
T Consensus       123 T~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~  168 (331)
T PLN02497        123 TFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWD  168 (331)
T ss_pred             EEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceee
Confidence            99975321        123454443578899999999876666553

>PLN02304 probable pectinesterase

Probab=96.82  E-value=0.02  Score=58.32  Aligned_cols=116  Identities=15%  Similarity=0.184  Sum_probs=76.1

Q ss_pred             CCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEeC--------------CcEE
Q 017716           94 DDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLTG--------------KGLR  149 (367)
Q Consensus        94 d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~G--------------~gi~  149 (367)
                      .+|.|   |+++||++    +..+++|+-..|+.+  +.|.|   .+|+||.|.|.+-++.-              ..+.
T Consensus        81 ~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~  158 (379)
T PLN02304         81 PNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQ  158 (379)
T ss_pred             CCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEE
Confidence            34555   79999975    233566666779884  66777   37899999986544421              0133


Q ss_pred             EeeeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          150 LKECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       150 i~~a~NVIIRnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      + .+++++.+||+|+....      ...-|+.+.-.+..+-+.+|.|.-..|-|++-   ...--+.+|+|.
T Consensus       159 v-~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe  226 (379)
T PLN02304        159 V-FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ  226 (379)
T ss_pred             E-ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence            3 48999999999997532      11234444435788999999998887777653   223445666665

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=96.82  E-value=0.01  Score=63.30  Aligned_cols=120  Identities=17%  Similarity=0.325  Sum_probs=80.9

Q ss_pred             CCCCCh---hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C------Cc-------
Q 017716           93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------KG-------  147 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G------~g-------  147 (367)
                      +.+|.|   |+++||++-     ..+.||+-..|+++  +.|.|.   .|+||+|.|.+-+|. +      .|       
T Consensus       246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa  323 (553)
T PLN02708        246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA  323 (553)
T ss_pred             CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence            445555   688888642     34566666789984  566663   689999998655553 1      12       


Q ss_pred             -EEEeeeccEEEeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEE
Q 017716          148 -LRLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDIT  208 (367)
Q Consensus       148 -i~i~~a~NVIIRnL~i~~g~~~d-~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VT  208 (367)
                       +.+ .+++++.|||+|+...+.+ .-|+.++-.+..+.+.+|.|.-..                 .|.+|+.-+.-.+-
T Consensus       324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~av  402 (553)
T PLN02708        324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAV  402 (553)
T ss_pred             EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceEE
Confidence             333 4899999999999865432 345555546889999999996543                 45566666666667


Q ss_pred             EeCceec
Q 017716          209 VSRCHFS  215 (367)
Q Consensus       209 IS~n~f~  215 (367)
                      +++|.|.
T Consensus       403 fq~c~i~  409 (553)
T PLN02708        403 FQDCAIL  409 (553)
T ss_pred             EEccEEE
Confidence            7777765

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=96.79  E-value=0.069  Score=56.88  Aligned_cols=148  Identities=14%  Similarity=0.350  Sum_probs=92.4

Q ss_pred             CCCh---hHHHhhhcC---C----CeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------c
Q 017716           95 DGPG---SLREGCRMK---E----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------G  147 (367)
Q Consensus        95 ~gpG---SLr~Ai~~~---~----P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------g  147 (367)
                      +|.|   |+++||++-   .    -|+||+-..|++  .+.|.|.   .|+||+|.|.+-+|. +.             .
T Consensus       230 dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT  307 (538)
T PLN03043        230 YGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSST  307 (538)
T ss_pred             CCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceE
Confidence            4555   688888642   1    256666678998  4667773   689999998655543 21             1


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEE
Q 017716          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV  209 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTI  209 (367)
                      +.+ .++++|.|||+|+...+. ..-|+.++-.+..+-+.+|.|.-..                 .|.+|+.-+.-.+-+
T Consensus       308 ~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avf  386 (538)
T PLN03043        308 FAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIF  386 (538)
T ss_pred             EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeee
Confidence            334 479999999999976432 2345555445788999999996543                 456666666677888


Q ss_pred             eCceecCCC-----ceeEecCCCCCCCCcceeEEEecceecC
Q 017716          210 SRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDG  246 (367)
Q Consensus       210 S~n~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~f~~  246 (367)
                      ++|.|.-..     ++++--.+... .+...-+.||+|.+..
T Consensus       387 q~c~i~~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~~  427 (538)
T PLN03043        387 QNCNLYARKPMANQKNAFTAQGRTD-PNQNTGISIINCTIEA  427 (538)
T ss_pred             eccEEEEecCCCCCCceEEecCCCC-CCCCceEEEEecEEec
Confidence            899886321     22222111111 0112357888887754

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=96.79  E-value=0.016  Score=61.60  Aligned_cols=104  Identities=23%  Similarity=0.461  Sum_probs=70.5

Q ss_pred             CCCCCh---hHHHhhhcC------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c-------
Q 017716           93 ADDGPG---SLREGCRMK------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G-------  147 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~~------~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g-------  147 (367)
                      +.+|.|   |+++||++-      ..+++|+-..|+++  +.|.|.   +|+||+|.|.+-+|. +.     +       
T Consensus       228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa  305 (539)
T PLN02995        228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA  305 (539)
T ss_pred             CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence            445666   788999752      23556665679984  567774   699999998655543 21     1       


Q ss_pred             -EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCCceE
Q 017716          148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (367)
Q Consensus       148 -i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~Dglid  199 (367)
                       +.+ .+++++.|||+|+...+. ..-|+.++-.+....+.+|.|.-..|-|++
T Consensus       306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~  358 (539)
T PLN02995        306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV  358 (539)
T ss_pred             EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhcc
Confidence             333 489999999999976432 234555544578899999999866555443

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=96.75  E-value=0.0078  Score=64.05  Aligned_cols=120  Identities=18%  Similarity=0.449  Sum_probs=80.3

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------c------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------G------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------g------i  148 (367)
                      +.+|.|   |+++||++    ...|+||+-..|++  ++.|.|.   +|+||+|.|.+.+|. +.       +      +
T Consensus       241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~  318 (548)
T PLN02301        241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV  318 (548)
T ss_pred             CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence            345666   78889865    23466667678998  4667774   689999998665553 21       1      2


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS  210 (367)
                      .+ .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-..                 .|.+|+.-+.-.+-++
T Consensus       319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  397 (548)
T PLN02301        319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ  397 (548)
T ss_pred             EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence            33 479999999999976432 2344444435788999999997544                 4555555556666677


Q ss_pred             Cceec
Q 017716          211 RCHFS  215 (367)
Q Consensus       211 ~n~f~  215 (367)
                      +|.|.
T Consensus       398 ~c~i~  402 (548)
T PLN02301        398 NCKIV  402 (548)
T ss_pred             ccEEE
Confidence            77765

>PLN02682 pectinesterase family protein

Probab=96.74  E-value=0.021  Score=58.08  Aligned_cols=111  Identities=15%  Similarity=0.252  Sum_probs=70.9

Q ss_pred             hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEEe
Q 017716           99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRLK  151 (367)
Q Consensus        99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~------------G~--------gi~i~  151 (367)
                      |+++||++-    ..+++|+-..|+.  .+.|.|   .+++||.|.|.+-++.            |.        .+.+ 
T Consensus        84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v-  160 (369)
T PLN02682         84 TIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV-  160 (369)
T ss_pred             CHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence            688898652    2345555567988  466777   4789999997544433            10        1344 


Q ss_pred             eeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      .+++++.+||+|+....      ...-|+.+.-.+.++-+.+|.|.-..|=|++-   ...--+.+|+|+
T Consensus       161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  227 (369)
T PLN02682        161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE  227 (369)
T ss_pred             ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence            48899999999997532      11224444335788999999998777666543   223344555554

>PLN02665 pectinesterase family protein

Probab=96.73  E-value=0.099  Score=53.18  Aligned_cols=98  Identities=13%  Similarity=0.236  Sum_probs=65.0

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC------------cEEEeeeccEEE
Q 017716           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK------------GLRLKECEHVII  158 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G~------------gi~i~~a~NVII  158 (367)
                      |+++||++    +..++||+-..|+.+  +.|.|.   +++||.|.+...++ ...            .+.+ .+++++.
T Consensus        82 TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a  158 (366)
T PLN02665         82 TITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA  158 (366)
T ss_pred             CHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence            78999975    223566666679884  667774   68899999754433 211            1333 4899999


Q ss_pred             eeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017716          159 CNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (367)
Q Consensus       159 RnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglid  199 (367)
                      +||+|+....      ...-|+.++-.+..+-+.+|.|.-..|=|++
T Consensus       159 ~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~  205 (366)
T PLN02665        159 ANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCD  205 (366)
T ss_pred             EeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEe
Confidence            9999997532      1123444433478899999999876666554

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=96.70  E-value=0.014  Score=61.85  Aligned_cols=120  Identities=18%  Similarity=0.406  Sum_probs=77.3

Q ss_pred             CCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------E
Q 017716           93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G-----~g--------i  148 (367)
                      +.+|.|   |+++||++-    ..+++|+-..|++  ++.|.|.   +|+||+|.|.+-+|. +     .+        +
T Consensus       211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~  288 (520)
T PLN02201        211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF  288 (520)
T ss_pred             cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence            335555   688898652    2355666667988  4667774   589999998654443 1     11        3


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~Dg-----------------lidi~~~s~~VTIS  210 (367)
                      .+ .+++++.+||+|+...+. ..-|+.++-.+..+-+.+|.|.-..|=                 .+|+.-+.-..-++
T Consensus       289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~  367 (520)
T PLN02201        289 AV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGDATAVFQ  367 (520)
T ss_pred             EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecCceEEEE
Confidence            33 489999999999976432 234454443578899999999765444                 44554455555666


Q ss_pred             Cceec
Q 017716          211 RCHFS  215 (367)
Q Consensus       211 ~n~f~  215 (367)
                      +|.|.
T Consensus       368 ~C~i~  372 (520)
T PLN02201        368 NCQIL  372 (520)
T ss_pred             ccEEE
Confidence            66664

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=96.66  E-value=0.021  Score=61.12  Aligned_cols=120  Identities=19%  Similarity=0.428  Sum_probs=79.7

Q ss_pred             CCCCCh---hHHHhhhcC----CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C------C--c------
Q 017716           93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------K--G------  147 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G------~--g------  147 (367)
                      +.+|.|   |+++||++-    ..++||+-..|+++  +.|.|.   +|+||+|.|.+-+|. +      +  +      
T Consensus       264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT  341 (572)
T PLN02990        264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT  341 (572)
T ss_pred             CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence            445666   788999752    23566666679884  667774   689999998654443 1      1  1      


Q ss_pred             EEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEE
Q 017716          148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV  209 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTI  209 (367)
                      +.+ .+++++.|||+|+...+. ..-|+.++-.+....+.+|.|.-..                 .|.+|+.-+.-..-+
T Consensus       342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf  420 (572)
T PLN02990        342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVVL  420 (572)
T ss_pred             EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEEE
Confidence            233 489999999999976432 2345555435788999999996543                 455565555566667


Q ss_pred             eCceec
Q 017716          210 SRCHFS  215 (367)
Q Consensus       210 S~n~f~  215 (367)
                      ++|.|.
T Consensus       421 ~~C~i~  426 (572)
T PLN02990        421 QNCNIV  426 (572)
T ss_pred             EccEEE
Confidence            777775

>PLN02314 pectinesterase

Probab=96.59  E-value=0.017  Score=62.06  Aligned_cols=120  Identities=20%  Similarity=0.396  Sum_probs=79.1

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i  148 (367)
                      +.+|.|   |+++||++    +..++||+-..|+++  +.|.|.   .|+||+|.|.+-+|. +.     +        +
T Consensus       283 a~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~  360 (586)
T PLN02314        283 AKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATF  360 (586)
T ss_pred             CCCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEE
Confidence            334555   68889865    234666666789984  567774   588999998655443 21     1        3


Q ss_pred             EEeeeccEEEeeeEEeCCCCCC-CCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~d-~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTIS  210 (367)
                      .+ .+++++.|||+|+...+.+ .-|+.++-++....+.+|.|.-..|                 |.+|+.-+.-.+-++
T Consensus       361 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~  439 (586)
T PLN02314        361 AA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQ  439 (586)
T ss_pred             EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeee
Confidence            33 4899999999999764322 3455554457889999999975544                 445555555556667


Q ss_pred             Cceec
Q 017716          211 RCHFS  215 (367)
Q Consensus       211 ~n~f~  215 (367)
                      +|.|.
T Consensus       440 ~c~i~  444 (586)
T PLN02314        440 NCNIQ  444 (586)
T ss_pred             ccEEE
Confidence            77664

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=96.59  E-value=0.085  Score=56.17  Aligned_cols=115  Identities=19%  Similarity=0.410  Sum_probs=77.2

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------EEEeeeccEE
Q 017716           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHVI  157 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G~-----g--------i~i~~a~NVI  157 (367)
                      |+++||++    +..++|||-..|++  .+.|.|.   .|+||+|.|.+-++ .+.     +        +.+ .+++++
T Consensus       246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~  322 (537)
T PLN02506        246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI  322 (537)
T ss_pred             CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence            68888865    23466677678988  4567774   68999999865544 321     1        233 489999


Q ss_pred             EeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEeCceecC
Q 017716          158 ICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       158 IRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      .|||+|+...+. ..-|+.++-.+.++-+.+|.|.-..                 .|.+|+.-+.-..-+++|.|.-
T Consensus       323 a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~  399 (537)
T PLN02506        323 ARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYT  399 (537)
T ss_pred             EEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEEE
Confidence            999999976432 2344444435788999999996543                 4556666666667777887763

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=96.59  E-value=0.019  Score=61.73  Aligned_cols=120  Identities=21%  Similarity=0.391  Sum_probs=77.5

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i  148 (367)
                      +.+|.|   |+++||++    ...++||+-..|+++  +.|.|.   +|+||+|.|.+-+|. +.     +        +
T Consensus       290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~  367 (596)
T PLN02745        290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF  367 (596)
T ss_pred             CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence            334555   78889975    233566665679884  567774   589999998655543 21     1        3


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCCC-----------------ceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~Dg-----------------lidi~~~s~~VTIS  210 (367)
                      .+ .+++++.+||+|+...+. ..-|+.++-.+..+.+.+|.|.-..|=                 .+|+.-+.-..-++
T Consensus       368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~  446 (596)
T PLN02745        368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQ  446 (596)
T ss_pred             EE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEE
Confidence            33 489999999999976432 234444443578899999999765444                 44444444555556


Q ss_pred             Cceec
Q 017716          211 RCHFS  215 (367)
Q Consensus       211 ~n~f~  215 (367)
                      +|.|.
T Consensus       447 ~C~i~  451 (596)
T PLN02745        447 NCLIF  451 (596)
T ss_pred             ecEEE
Confidence            66554

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=96.56  E-value=0.021  Score=61.03  Aligned_cols=120  Identities=16%  Similarity=0.421  Sum_probs=79.1

Q ss_pred             CCCCCh---hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC------------
Q 017716           93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK------------  146 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~~-------~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~------------  146 (367)
                      +.+|.|   |+++||++-       ..++||+-..|+++  +.|.|.   .|+||+|.|.+-+|. +.            
T Consensus       255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S  332 (566)
T PLN02713        255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS  332 (566)
T ss_pred             CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence            445665   688888652       22456665679984  667773   688999998654443 21            


Q ss_pred             -cEEEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceE
Q 017716          147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDI  207 (367)
Q Consensus       147 -gi~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~V  207 (367)
                       .+.+ .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-..                 .|.+|+.-+.-.+
T Consensus       333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a  411 (566)
T PLN02713        333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV  411 (566)
T ss_pred             eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence             1344 479999999999986432 2345544445788999999996544                 4455555566667


Q ss_pred             EEeCceec
Q 017716          208 TVSRCHFS  215 (367)
Q Consensus       208 TIS~n~f~  215 (367)
                      -+++|.|.
T Consensus       412 vfq~C~i~  419 (566)
T PLN02713        412 VFQNCNLY  419 (566)
T ss_pred             EEeccEEE
Confidence            77777775

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=96.52  E-value=0.029  Score=59.60  Aligned_cols=101  Identities=22%  Similarity=0.463  Sum_probs=69.6

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecC-----------CceEEEeCceec
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCHFS  215 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~-----------s~~VTIS~n~f~  215 (367)
                      ++....++|+.++||+|..-.....|||.+. .++||.|+-|.|+-+.|- |-++.+           +.+|+|++|+|.
T Consensus       263 ~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~~~~~~~~i~i~~c~~~  340 (542)
T COG5434         263 TVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKKGYGPSRNIVIRNCYFS  340 (542)
T ss_pred             EEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCCcccccccccccEEEecceec
Confidence            4566789999999999987554467999997 899999999999875544 444432           457999999998


Q ss_pred             CCCceeEecCCCCCCCCcc-eeEEEecceecCCCCCCCcc
Q 017716          216 SHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRV  254 (367)
Q Consensus       216 ~H~k~~LiG~sd~~~~d~~-~~VT~hhN~f~~~~~R~Pr~  254 (367)
                      .-.-+..+|+.-    +++ .+|++-.|.|.+ ..|-=|+
T Consensus       341 ~ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi  375 (542)
T COG5434         341 SGHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI  375 (542)
T ss_pred             ccccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence            432333344321    122 367777777776 4444444

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=96.45  E-value=0.024  Score=60.65  Aligned_cols=118  Identities=17%  Similarity=0.358  Sum_probs=77.9

Q ss_pred             CCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe--------CC------cEEE
Q 017716           95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GLRL  150 (367)
Q Consensus        95 ~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~--------G~------gi~i  150 (367)
                      +|.|   |+++||++    +..+.||+-..|+++  +.|.|.   .|+||+|.|.+-+|.        |.      .+.+
T Consensus       265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v  342 (565)
T PLN02468        265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV  342 (565)
T ss_pred             CCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence            4555   67788865    233566666789884  667774   578999998655443        11      1333


Q ss_pred             eeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEeCc
Q 017716          151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRC  212 (367)
Q Consensus       151 ~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS~n  212 (367)
                       .+++++.|||+|+...+. ..-|+.++-.+..+.+.+|.|.-..                 .|.+|+.-+.-.+-+++|
T Consensus       343 -~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~c  421 (565)
T PLN02468        343 -FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQNC  421 (565)
T ss_pred             -ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEecc
Confidence             478999999999976432 2344444435788999999996543                 455566666666677777


Q ss_pred             eec
Q 017716          213 HFS  215 (367)
Q Consensus       213 ~f~  215 (367)
                      .|.
T Consensus       422 ~i~  424 (565)
T PLN02468        422 NIL  424 (565)
T ss_pred             EEE
Confidence            774

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=96.43  E-value=0.018  Score=61.80  Aligned_cols=121  Identities=17%  Similarity=0.363  Sum_probs=81.6

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-------------cE
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-------------GL  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-------------gi  148 (367)
                      +.+|.|   |+++||++    +..++||+-..|++  .+.+.|.   .|++|+|.|.+-+|. +.             .+
T Consensus       280 a~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~  357 (587)
T PLN02313        280 AADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATV  357 (587)
T ss_pred             CCCCCCCCccHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEE
Confidence            334555   68888865    23456666677988  4667774   589999998655543 21             12


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecC-----------------CCCceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDY-----------------DDGLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~-----------------~Dglidi~~~s~~VTIS  210 (367)
                      .+ .+++++.|||+|+...+. ..-|+.++-.+....+.+|.|.-.                 -.|.+|+.-+.-.+-++
T Consensus       358 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq  436 (587)
T PLN02313        358 AA-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQ  436 (587)
T ss_pred             EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEE
Confidence            33 479999999999976432 223444443578899999999643                 25666776677778888


Q ss_pred             CceecC
Q 017716          211 RCHFSS  216 (367)
Q Consensus       211 ~n~f~~  216 (367)
                      +|.|.-
T Consensus       437 ~c~i~~  442 (587)
T PLN02313        437 DCDINA  442 (587)
T ss_pred             ccEEEE
Confidence            888863

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=96.23  E-value=0.04  Score=59.24  Aligned_cols=121  Identities=20%  Similarity=0.392  Sum_probs=79.0

Q ss_pred             CCCCCh---hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 017716           93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L  148 (367)
Q Consensus        93 ~d~gpG---SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G~-----g--------i  148 (367)
                      +.+|.|   |+++||++    +..++||+-..|+++-+ .|.|.   +|+||+|.|.+-+|. +.     +        +
T Consensus       277 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~-~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~  355 (587)
T PLN02484        277 SKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEEN-NLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASF  355 (587)
T ss_pred             CCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEE-EEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEE
Confidence            344554   68889865    23456666678998421 47774   689999998655543 21     1        2


Q ss_pred             EEeeeccEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCC-----------------CCceEeecCCceEEEe
Q 017716          149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS  210 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~s~~VTIS  210 (367)
                      .+ .+++++.|||+|+...+. ..-|+.++-.+.+..+.+|.|.-..                 .|.+|+.-+.-..-++
T Consensus       356 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq  434 (587)
T PLN02484        356 AA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQ  434 (587)
T ss_pred             EE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEe
Confidence            33 489999999999976432 2344444435788999999996544                 4455555555666677


Q ss_pred             Cceec
Q 017716          211 RCHFS  215 (367)
Q Consensus       211 ~n~f~  215 (367)
                      +|.|.
T Consensus       435 ~C~i~  439 (587)
T PLN02484        435 NCSIY  439 (587)
T ss_pred             ccEEE
Confidence            77775

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=96.13  E-value=0.038  Score=54.60  Aligned_cols=110  Identities=17%  Similarity=0.367  Sum_probs=65.9

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceE-EeCC-------------cEEEeeeccEE
Q 017716           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHVI  157 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~-I~G~-------------gi~i~~a~NVI  157 (367)
                      |+++||+.    ...+++|+-..|+.+  +.|.|.   +++||+|.+..-+ |.+.             .|.+. +++++
T Consensus        14 TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f~   90 (298)
T PF01095_consen   14 TIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDFT   90 (298)
T ss_dssp             SHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred             CHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-cccee
Confidence            58888875    233556666789984  667775   5899999975444 3331             14554 89999


Q ss_pred             EeeeEEeCCCCC---CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC
Q 017716          158 ICNLEFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       158 IRnL~i~~g~~~---d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      ++||+|+...+.   ..-||.+.  +.++.+.+|.|.-..|-|+.-   ....-+.+|+|..
T Consensus        91 ~~nit~~Nt~g~~~~qAvAl~~~--~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG  147 (298)
T PF01095_consen   91 AENITFENTAGPSGGQAVALRVS--GDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG  147 (298)
T ss_dssp             EEEEEEEEHCSGSG----SEEET---TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred             eeeeEEecCCCCcccceeeeeec--CCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence            999999974321   23466664  678999999998888876643   2355667777763

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PLN02634 probable pectinesterase

Probab=96.12  E-value=0.085  Score=53.50  Aligned_cols=98  Identities=17%  Similarity=0.263  Sum_probs=64.2

Q ss_pred             hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEEe
Q 017716           99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRLK  151 (367)
Q Consensus        99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~gi~I~------------G~--------gi~i~  151 (367)
                      |+++||++-    ..+++|+-..|+.  .+.|.|   .+|+||.|.|...+|.            |.        .+.+ 
T Consensus        70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V-  146 (359)
T PLN02634         70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV-  146 (359)
T ss_pred             CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence            477888642    2344555567988  456777   3689999998665553            10        1333 


Q ss_pred             eeccEEEeeeEEeCCCC------CCCCceEecCCCceEEEEceeeecCCCCceE
Q 017716          152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID  199 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~~------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglid  199 (367)
                      .+++++.+||+|+....      ...-|+.+.-.+.++-+.+|.|.-..|=|++
T Consensus       147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~  200 (359)
T PLN02634        147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCD  200 (359)
T ss_pred             ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeee
Confidence            47899999999997532      1223444433477899999999876666554

>PLN02916 pectinesterase family protein

Probab=96.07  E-value=0.053  Score=57.19  Aligned_cols=114  Identities=17%  Similarity=0.341  Sum_probs=74.1

Q ss_pred             hHHHhhhcC-------CCeEEEEEeceEEEecceeEec---cCcceeeeccceEEe-C-------C------cEEEeeec
Q 017716           99 SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKECE  154 (367)
Q Consensus        99 SLr~Ai~~~-------~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I~-G-------~------gi~i~~a~  154 (367)
                      |+++||++-       ..++||+-..|+++  +.+.|.   +|+||+|.|.+-+|. +       .      .+.+ .++
T Consensus       201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~  277 (502)
T PLN02916        201 TINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD  277 (502)
T ss_pred             CHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence            688888642       33566666779884  667774   588999998655543 2       1      1333 488


Q ss_pred             cEEEeeeEEeCCCCC-CCCceEecCCCceEEEEceeeecCCC-----------------CceEeecCCceEEEeCceec
Q 017716          155 HVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       155 NVIIRnL~i~~g~~~-d~DaI~i~~~s~nVWIDHcsfs~~~D-----------------glidi~~~s~~VTIS~n~f~  215 (367)
                      +++.|||+|+...+. ..-|+.++-.+...-+.+|.|.-..|                 |.+|+.-+.-.+-+++|.|.
T Consensus       278 ~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avFq~C~I~  356 (502)
T PLN02916        278 GFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDAAVVFQNCDIF  356 (502)
T ss_pred             CEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccceeccCceEEEecCEEE
Confidence            999999999976432 22444443357889999999975544                 44555555555566666654

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=95.84  E-value=0.028  Score=50.94  Aligned_cols=104  Identities=24%  Similarity=0.396  Sum_probs=57.8

Q ss_pred             CcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceE-------------------ecCCCceEEEEceeee
Q 017716          131 YKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQ-------------------IKPKSKHIWIDRCSLR  191 (367)
Q Consensus       131 nkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~-------------------i~~~s~nVWIDHcsfs  191 (367)
                      +++|.|.+....=...++.+..+.++.|+|++++...   .++|.                   ++.++.+++++.|.+.
T Consensus        98 nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
T PF12708_consen   98 NLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIFN  174 (225)
T ss_dssp             EEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEEE
T ss_pred             eeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcccc
Confidence            5777775322100134677777999999999999753   12222                   2211222333455555


Q ss_pred             cCCCCceEeecCCceEEEeCceecC-CCceeEecCCCCCCCCcceeEEEecceecCCC
Q 017716          192 DYDDGLIDITRESTDITVSRCHFSS-HDKTMLIGADPSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       192 ~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~  248 (367)
                      .+.+| +  ..+.++++|++|.|.. ...++.+-...        .+++.+|.|.+|.
T Consensus       175 ~~~~g-~--~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~  221 (225)
T PF12708_consen  175 GGDNG-I--ILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD  221 (225)
T ss_dssp             SSSCS-E--ECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred             CCCce-e--EeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence            56666 2  2234688888888875 44554443221        4666777776664

...

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=95.72  E-value=0.22  Score=49.47  Aligned_cols=125  Identities=19%  Similarity=0.252  Sum_probs=75.4

Q ss_pred             CcceeeeccceEEeC--CcEEE-eeeccEEEeeeEEeCCCC----CCCCce-EecCCCceEEEEceeeecCCCCceEeec
Q 017716          131 YKTIDGRGQRVKLTG--KGLRL-KECEHVIICNLEFEGGKG----PDVDAI-QIKPKSKHIWIDRCSLRDYDDGLIDITR  202 (367)
Q Consensus       131 nkTI~G~G~gi~I~G--~gi~i-~~a~NVIIRnL~i~~g~~----~d~DaI-~i~~~s~nVWIDHcsfs~~~Dglidi~~  202 (367)
                      |+||.+.++   ...  ..|.| ..+.||-|.|.+|..+..    ...||+ .|..++..|=|-.|.|-+..-.+|--..
T Consensus       131 Nltf~~~~~---~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~s  207 (345)
T COG3866         131 NLTFEGFYQ---GDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSS  207 (345)
T ss_pred             eeEEEeecc---CCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccC
Confidence            566666531   111  34666 578999999999998542    245554 5665788888888888765444332222


Q ss_pred             -------CCceEEEeCceecCCCc---eeEecCCCCCCCCcceeEEEecceecCCCCCCCccccC---eeEEEcceEECc
Q 017716          203 -------ESTDITVSRCHFSSHDK---TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYA---KVHLYNNYTRNW  269 (367)
Q Consensus       203 -------~s~~VTIS~n~f~~H~k---~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G---~~Hv~NN~~~n~  269 (367)
                             +.-.||+.+|+|.+-..   -+-+|           .|-+-+|+|.....=.=-++.|   ++++.||||.+.
T Consensus       208 D~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG-----------~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~  276 (345)
T COG3866         208 DSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFG-----------MVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENG  276 (345)
T ss_pred             CcccccCCceeEEEeccccccccccCCceEee-----------EEEEeccccccCcccceEEeeccceEEEEecceeccC
Confidence                   22359999999985321   11111           3444568888322211122334   689999999984

>PLN02671 pectinesterase

Probab=95.57  E-value=0.2  Score=50.94  Aligned_cols=111  Identities=13%  Similarity=0.230  Sum_probs=70.2

Q ss_pred             hHHHhhhcC----CCeEEEEEeceEEEecceeEe---ccCcceeeecc---ceEEeC-----------C--------cEE
Q 017716           99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTG-----------K--------GLR  149 (367)
Q Consensus        99 SLr~Ai~~~----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~---gi~I~G-----------~--------gi~  149 (367)
                      |+++||++-    ..+++|+-..|+.  .+.|.|   .+++||+|.|.   ...|..           .        .+.
T Consensus        73 TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~  150 (359)
T PLN02671         73 TVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT  150 (359)
T ss_pred             CHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence            688888652    2345555567888  466777   36889999863   334441           0        123


Q ss_pred             EeeeccEEEeeeEEeCCCC-----CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          150 LKECEHVIICNLEFEGGKG-----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       150 i~~a~NVIIRnL~i~~g~~-----~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      + .+++++.+||+|+....     ...-|+.+.-.+.++-+.+|.|.-..|=|++-   ...--+.+|+|.
T Consensus       151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe  217 (359)
T PLN02671        151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ  217 (359)
T ss_pred             E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence            3 47999999999997621     11234433324788999999998887777653   223344566655

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=95.56  E-value=0.18  Score=46.88  Aligned_cols=127  Identities=18%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             Ccceeee---------ccceEEeCCcEEEeeeccEEEeeeEEeCCCC----CCCC-ceEecCCCceEEEEceeeecCCCC
Q 017716          131 YKTIDGR---------GQRVKLTGKGLRLKECEHVIICNLEFEGGKG----PDVD-AIQIKPKSKHIWIDRCSLRDYDDG  196 (367)
Q Consensus       131 nkTI~G~---------G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~----~d~D-aI~i~~~s~nVWIDHcsfs~~~Dg  196 (367)
                      |++|.+.         +....-.+..|.|.+++||+|-+.+|..+..    ...| .|.+..++++|=|-+|-|......
T Consensus        52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~  131 (200)
T PF00544_consen   52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT  131 (200)
T ss_dssp             S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred             CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence            6777763         2232334567999999999999999998721    1134 456655789999999999764322


Q ss_pred             ceE------eecCCceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceE
Q 017716          197 LID------ITRESTDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYT  266 (367)
Q Consensus       197 lid------i~~~s~~VTIS~n~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~  266 (367)
                      ++.      .......||+-.|+|.+... .=++         |.-.+-+-+|+|.+.....=.++. +++-+.||||
T Consensus       132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~---------r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV---------RFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE---------CSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             cccCCCCCccccCCceEEEEeEEECchhhCCCcc---------cccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            221      11223689999999974321 1121         112678888999877777655654 4789999987

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=95.55  E-value=0.19  Score=52.05  Aligned_cols=98  Identities=15%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             hHHHhhhcC-----CCeEEEEEeceEEEecceeEe---ccCcceeeecc---ceEEeCC---------------------
Q 017716           99 SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQ---RVKLTGK---------------------  146 (367)
Q Consensus        99 SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V---~snkTI~G~G~---gi~I~G~---------------------  146 (367)
                      |+++||++.     ..+++|+-..|+.+  +.|.|   .+++||.|.|.   +..|...                     
T Consensus        96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~  173 (422)
T PRK10531         96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM  173 (422)
T ss_pred             CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence            788899742     23556665679884  56777   37899999763   2344321                     


Q ss_pred             ------------------c--------EEEeeeccEEEeeeEEeCCCCC-----CCCceEecCCCceEEEEceeeecCCC
Q 017716          147 ------------------G--------LRLKECEHVIICNLEFEGGKGP-----DVDAIQIKPKSKHIWIDRCSLRDYDD  195 (367)
Q Consensus       147 ------------------g--------i~i~~a~NVIIRnL~i~~g~~~-----d~DaI~i~~~s~nVWIDHcsfs~~~D  195 (367)
                                        .        +.+ .+++++.+||+|+...+.     ..-|+-+.-.+..+.+.+|.|.-..|
T Consensus       174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD  252 (422)
T PRK10531        174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD  252 (422)
T ss_pred             ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence                              0        222 479999999999976431     12344443357889999999988777


Q ss_pred             CceE
Q 017716          196 GLID  199 (367)
Q Consensus       196 glid  199 (367)
                      =|+.
T Consensus       253 TLy~  256 (422)
T PRK10531        253 TFFV  256 (422)
T ss_pred             eeee
Confidence            7765

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=94.50  E-value=0.86  Score=46.05  Aligned_cols=89  Identities=16%  Similarity=0.096  Sum_probs=65.6

Q ss_pred             eeEeccCcceeeeccceEEeCC--cEEEeeeccEEEeeeEEeCCCC----CCCCceEecCCCceEEEEceeeecCCCCce
Q 017716          125 HLSVSSYKTIDGRGQRVKLTGK--GLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI  198 (367)
Q Consensus       125 ~l~V~snkTI~G~G~gi~I~G~--gi~i~~a~NVIIRnL~i~~g~~----~d~DaI~i~~~s~nVWIDHcsfs~~~Dgli  198 (367)
                      .|.|....|.++.- ...|.|.  ||.+.++.++.|+.-+|.+-..    ..++||.+. ++..+-|--+.++...|+.+
T Consensus        99 gI~v~~~at~A~Vr-~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy  176 (408)
T COG3420          99 GIFVGRTATGAVVR-HNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY  176 (408)
T ss_pred             eEEeccCcccceEE-cccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence            46666666666652 2234443  5788889999999999987542    348999998 88899999999999999954


Q ss_pred             EeecCCceEEEeCceecCC
Q 017716          199 DITRESTDITVSRCHFSSH  217 (367)
Q Consensus       199 di~~~s~~VTIS~n~f~~H  217 (367)
                       + .-|..-+|+.|.|++-
T Consensus       177 -~-~~S~~~~~~gnr~~~~  193 (408)
T COG3420         177 -S-DTSQHNVFKGNRFRDL  193 (408)
T ss_pred             -E-cccccceecccchhhe
Confidence             3 3467777888887753

>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina

Probab=94.39  E-value=0.72  Score=42.85  Aligned_cols=88  Identities=22%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             ceEEEeCceecCCCc--eeEecCCCCCCCCcceeEEEecceecCCCCCCCcc--ccC-------eeEEEcceEECcccce
Q 017716          205 TDITVSRCHFSSHDK--TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYA-------KVHLYNNYTRNWGIYA  273 (367)
Q Consensus       205 ~~VTIS~n~f~~H~k--~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~--r~G-------~~Hv~NN~~~n~~~ya  273 (367)
                      ++|-|=+|.|.+-.-  .-|+|...+...+....|-+|||.|-.+.. +|..  ..|       ..-+.||+|+..-..|
T Consensus         2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa   80 (198)
T PF08480_consen    2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA   80 (198)
T ss_pred             CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccccce
Confidence            578888888886443  346787655555555689999999976532 3443  333       2479999998754444


Q ss_pred             ee----------ecCCceEEEEceeEecCC
Q 017716          274 VC----------ASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       274 i~----------~~~~a~i~~e~N~F~~g~  293 (367)
                      +.          .+.+=...+.+|.+.+..
T Consensus        81 i~~~y~~~~~sp~gsgyttivRNNII~NT~  110 (198)
T PF08480_consen   81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTR  110 (198)
T ss_pred             EEEEecccccCCCCCceEEEEEcceEeeee
Confidence            42          123345667888888764

Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=92.90  E-value=0.48  Score=50.59  Aligned_cols=135  Identities=20%  Similarity=0.324  Sum_probs=86.5

Q ss_pred             CCCeEEEEEeceEEEecc------e---e-Ee-ccCcceeeeccceEE----eCCcEEEeeeccEEEeeeEEeCCCCCCC
Q 017716          107 KEPLWIVFEVSGTIHLRS------H---L-SV-SSYKTIDGRGQRVKL----TGKGLRLKECEHVIICNLEFEGGKGPDV  171 (367)
Q Consensus       107 ~~P~~IVf~vsGtI~l~~------~---l-~V-~snkTI~G~G~gi~I----~G~gi~i~~a~NVIIRnL~i~~g~~~d~  171 (367)
                      ..|+.|.|.--..+.+..      +   + .+ .+|+||.+.  .+..    .-.||.+..++||.|.+.+|..+    +
T Consensus       236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D  309 (542)
T COG5434         236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D  309 (542)
T ss_pred             cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence            467777765444443322      1   1 11 256666654  1111    22378999999999999999975    3


Q ss_pred             CceEecC-----------CCceEEEEceeeecCCCCceEeec---CCceEEEeCceecCCCceeEecCCCCCCCCcceeE
Q 017716          172 DAIQIKP-----------KSKHIWIDRCSLRDYDDGLIDITR---ESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRV  237 (367)
Q Consensus       172 DaI~i~~-----------~s~nVWIDHcsfs~~~Dglidi~~---~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~V  237 (367)
                      |+|.+..           -+++|||-||-|+.++-+++.-.+   +-.+|++.+|.|.+-+.+.-|...+... ...-+|
T Consensus       310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI  388 (542)
T COG5434         310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI  388 (542)
T ss_pred             ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence            5555541           257899999999988777655332   4579999999999877766665443221 112377


Q ss_pred             EEecceecCCC
Q 017716          238 TIHHCFFDGTR  248 (367)
Q Consensus       238 T~hhN~f~~~~  248 (367)
                      +|+.+...+..
T Consensus       389 ~~~~~~~~nv~  399 (542)
T COG5434         389 VFEDNKMRNVK  399 (542)
T ss_pred             EEecccccCcc
Confidence            87777666654

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=90.96  E-value=0.53  Score=48.81  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=15.6

Q ss_pred             EEEecceecCCCCC--CCcccc-CeeE-EEcceEECcc
Q 017716          237 VTIHHCFFDGTRQR--HPRVRY-AKVH-LYNNYTRNWG  270 (367)
Q Consensus       237 VT~hhN~f~~~~~R--~Pr~r~-G~~H-v~NN~~~n~~  270 (367)
                      -++..|+|-+...+  ..-+|. |.-| |+|||+++..
T Consensus       247 n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~  284 (425)
T PF14592_consen  247 NTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLT  284 (425)
T ss_dssp             -EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESS
T ss_pred             ceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccc
Confidence            45566677555433  455553 4443 6777777653

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]

Probab=83.30  E-value=16  Score=36.99  Aligned_cols=146  Identities=11%  Similarity=0.140  Sum_probs=88.8

Q ss_pred             hhHHHhhhc-----CCCeEEEEEeceEEEecceeEec-cC--cceeeeccc--eEEe-----C---C--cE---------
Q 017716           98 GSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS-SY--KTIDGRGQR--VKLT-----G---K--GL---------  148 (367)
Q Consensus        98 GSLr~Ai~~-----~~P~~IVf~vsGtI~l~~~l~V~-sn--kTI~G~G~g--i~I~-----G---~--gi---------  148 (367)
                      -|.++||++     ...|.+|+-..|.+  ++.|.|. ++  +|+.|.+..  -+.+     +   .  +.         
T Consensus        95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~  172 (405)
T COG4677          95 TTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR  172 (405)
T ss_pred             HHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence            467777764     23566677677887  4567775 44  899998644  1221     1   1  11         


Q ss_pred             -----------EEeeeccEEEeeeEEeCCCC--CCC---CceEecCCCceEEEEceeeecCCCCceEeecCCc-------
Q 017716          149 -----------RLKECEHVIICNLEFEGGKG--PDV---DAIQIKPKSKHIWIDRCSLRDYDDGLIDITREST-------  205 (367)
Q Consensus       149 -----------~i~~a~NVIIRnL~i~~g~~--~d~---DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~-------  205 (367)
                                 .+...++.+++||+|+...+  ...   -++-+...+..+.+..|.+--..|-|+.-..+..       
T Consensus       173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~  252 (405)
T COG4677         173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR  252 (405)
T ss_pred             hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence                       11235789999999986432  111   3555555678899999999888887765543211       


Q ss_pred             --eEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017716          206 --DITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR  255 (367)
Q Consensus       206 --~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r  255 (367)
                        .--+.+|+|+.| --+++|+.         .+-||.|-|.-+..|.+-..
T Consensus       253 ~~R~yftNsyI~Gd-vDfIfGsg---------taVFd~c~i~~~d~r~~~~g  294 (405)
T COG4677         253 QPRTYFTNSYIEGD-VDFIFGSG---------TAVFDNCEIQVVDSRTQQEG  294 (405)
T ss_pred             chhhheecceeccc-ceEEeccc---------eEEeccceEEEeccCCCcce
Confidence              123456666643 23455654         45667777777777875443

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=82.68  E-value=7.4  Score=38.19  Aligned_cols=64  Identities=17%  Similarity=0.354  Sum_probs=48.2

Q ss_pred             eeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCCC
Q 017716          152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP  227 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd  227 (367)
                      +++|..|.|.+|..|..    +  +. .++||-+++|.|.|-+=    +.+ ++++.|.+|+|..-.++.||.+.+
T Consensus        17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~~   80 (277)
T PF12541_consen   17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSNN   80 (277)
T ss_pred             ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeCC
Confidence            57899999999997643    2  44 68899999999987331    212 467888899998888888887664

Proteins in this family are typically between 281 and 297 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
1pxz_A	346	1.7 Angstrom Crystal Structure Of Jun A 1, The Majo		4e-35
1vbl_A	416	Structure Of The Thermostable Pectate Lyase Pl 47 L		2e-25
3zsc_A	340	Catalytic Function And Substrate Recognition Of The		7e-24
3vmv_A	326	Crystal Structure Of Pectate Lyase Bsp165pela From		2e-20
1bn8_A	420	Bacillus Subtilis Pectate Lyase Length = 420		2e-16
1pcl_A	355	Unusual Structural Features In The Parallel Beta-He		2e-16
2bsp_A	420	Bacillus Subtilis Pectate Lyase R279k Mutant Length		4e-16
3krg_A	399	Structural Insights Into Substrate Specificity And		8e-16
2nzm_A	399	Hexasaccharide I Bound To Bacillus Subtilis Pectate		1e-15
1jrg_A	361	Crystal Structure Of The R3 Form Of Pectate Lyase A		2e-13
1ooc_A	361	Mutations In The T1.5 Loop Of Pectate Lyase A Lengt		2e-13
2qxz_A	330	Pectate Lyase R236f From Xanthomonas Campestris Len		1e-07
2qy1_A	330	Pectate Lyase A31g/r236f From Xanthomonas Campestri		1e-07
2qx3_A	330	Structure Of Pectate Lyase Ii From Xanthomonas Camp		7e-07
1plu_A	353	Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu		3e-05
2ewe_A	353	Crystal Structure Of Pectate Lyase C R218k Mutant I		7e-05

>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 131/251 (52%), Gaps = 27/251 (10%)
Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHL 122
           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  +  I L
Sbjct: 21  LADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL 80
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVII-------CNLEFEG-------- 165
           +  L V+ +KTIDGRG  V L   G  L +++  HVI+       CN    G        
Sbjct: 81  KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESI 140
Query: 166 GKGP----DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTM 221
           G  P    D DAI ++    + WID  SL D  DGLID+T  ST IT+S  HF +H K M
Sbjct: 141 GVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVM 199
Query: 222 LIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           L+G D ++  D+ ++VT+  + F     QR PR RY  VH+ NN    W IYA+  S + 
Sbjct: 200 LLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNP 259
Query: 281 QIYSQCNIYEA 291
            I S+ N + A
Sbjct: 260 TILSEGNSFTA 270

>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 125/276 (45%), Gaps = 55/276 (19%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + V S  +I G G+  K+ G G  +K  ++VII N+EFE                G 
Sbjct: 125 RIMVYVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGE 184
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209
              + D+I I+  S HIWID  +  D D                 DG +DI   S  IT+
Sbjct: 185 WNSEYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITI 243
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
           S   F++HDK  LIGA  S +AD   +RVT+HH ++    QR PRVR+ +VH+YNNY   
Sbjct: 244 SYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEF 303
Query: 269 WGI------YAVCASVDSQIYSQCN------------IYEAGQKKMAFKYLTEKASDKEE 310
             +      YA    V SQIY+Q N            I +   K     Y T    D   
Sbjct: 304 SNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWSKNEESMYETGTIVDLPN 363
Query: 311 AR--TDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPS 344
            R   D + S  + ++L+LK  +  +   +++ HP+
Sbjct: 364 GRRYIDLVASYNESNTLQLKKEVTWKPMFYHVIHPT 399

>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 34/243 (13%)
Query: 79  IGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--RSHLSVSSYKTIDG 136
           +GGL G +  V T  +    +  EG         V  V GTI    +  + V S KTI G
Sbjct: 22  VGGLGGEIVFVRTAEELEKYTTAEGKY-------VIVVDGTIVFEPKREIKVLSDKTIVG 74
Query: 137 RGQRVKLTGKGLRLKECEHVIICNLEFEG--------GKGPDVDAIQIKPKSKHIWIDRC 188
                K+ G GL +K+ ++VII N+ FEG        GK  D D I ++  S HIWID  
Sbjct: 75  I-NDAKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHI 132
Query: 189 SLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA----DPSHVADRCIRVTIHHCFF 244
           +  + +DG +DI + S  ITVS   F  HDK  L+G+    DP   A +  +VT HH +F
Sbjct: 133 TFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQ-AGQAYKVTYHHNYF 191
Query: 245 DGTRQRHPRVRYAKVHLYNNY----------TRNWGIYAVCASVDSQIYSQCNIYEAGQK 294
               QR PR+R+   H++NN+             + IY V +++ ++++ + N +     
Sbjct: 192 KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGA 251
Query: 295 KMA 297
            MA
Sbjct: 252 VMA 254

>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 133 TIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSL-- 190
           +I G G   +  G G+RL    ++II N+     +  +  AI++   SK++WID      
Sbjct: 82  SIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYS 141
Query: 191 -------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG-ADPSHVADRCIRVTIHHC 242
                   DY DGL+D+ R +  ITVS   F +H KTML+G  D + +A    ++T HH 
Sbjct: 142 EFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPD--KITYHHN 199
Query: 243 FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
           +F+    R P +RYA VH++NNY ++    A+ + V ++++ + N ++
Sbjct: 200 YFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFD 247

>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 141 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 199
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 200 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 258
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY   
Sbjct: 259 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 318
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 319 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347

>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 82/173 (47%), Gaps = 32/173 (18%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PD 170
           RS +S+ S  TI G G   K T   L +K  ++VI+ NL           +E G G   +
Sbjct: 73  RSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAE 132
Query: 171 VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCH 213
            DA  I   S ++W+D  ++ D                   DG +DI + S  +T+S   
Sbjct: 133 WDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSR 191
Query: 214 FSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
           F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+  +H YNN
Sbjct: 192 FELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 244

>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 141 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 199
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 200 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 258
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    Q+ PRVR+ +VH+YNNY   
Sbjct: 259 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEG 318
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 319 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347

>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTAGSSGN 178
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 179 WASQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HD + + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY   
Sbjct: 238 SYNYYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 298 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 326

>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 53/214 (24%)
Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GG 166
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G 
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178
Query: 167 KGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITV 209
                D I I   + HIWID C+  D                 + DG  D +  +  IT+
Sbjct: 179 WNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237
Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY--- 265
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    Q  PRVR+ +VH+YNNY   
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEG 297
Query: 266 ---------TRNWGIYAVCASVDSQIYSQCNIYE 290
                    +  WGI        S+IY+Q N+ +
Sbjct: 298 STSSSSYPFSYAWGI-----GKSSKIYAQNNVID 326

>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 54/227 (23%)
Query: 86  LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--------------RSHLSVSSY 131
           +Y VT +++    +L  G   K     + ++ GTI +              RS +++ + 
Sbjct: 35  IYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDFADQKARSQINIPAN 88
Query: 132 KTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQI 176
            T+ G G   K     L +   +   +VII N+           +E G G   + DA+ I
Sbjct: 89  TTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNI 148
Query: 177 KPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDK 219
              + H+WID  ++ D +                 DG +DI R S  +T+S      HDK
Sbjct: 149 TNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDK 208
Query: 220 TMLIG-ADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
           TMLIG  D +   D+  + VT+ +  F+   +R PRVRY  +H +NN
Sbjct: 209 TMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255

>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 54/227 (23%)
Query: 86  LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL--------------RSHLSVSSY 131
           +Y VT +++    +L  G   K     + ++ GTI +              RS +++ + 
Sbjct: 35  IYIVTNISE-FTSALSAGAEAK-----IIQIKGTIDISGGTPYTDFADQKARSQINIPAN 88
Query: 132 KTIDGRGQRVKLTGKGLRLKECE---HVIICNL----------EFEGGKG--PDVDAIQI 176
            T+ G G   K     L +   +   +VII N+           +E G G   + DA+ I
Sbjct: 89  TTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNI 148
Query: 177 KPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHDK 219
              + H+WID  ++ D +                 DG +DI R S  +T+S      HDK
Sbjct: 149 TNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDK 208
Query: 220 TMLIG-ADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 264
           TMLIG +D +   D+  + VT+ +  F+   +R PRVRY  +H +NN
Sbjct: 209 TMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 255

>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
           G+R+    H VII N+     +GG+  D D+I ++  S      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
              D   DG ID+ +    +TVS  +  ++ K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
             R P  R+   H+YNNY  N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
           G+R+    H VII N+     +GG+  D D+I ++  S      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
              D   DG ID+ +    +TVS  +  ++ K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
             R P  R+   H+YNNY  N
Sbjct: 205 ESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 147 GLRLKECEH-VIICNLE---FEGGKGPDVDAIQIKPKSK----HIWID---------RCS 189
           G+R+    H VII N+     +GG+  D D+I ++  S      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 190 -LRDYD-DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
              D   DG ID+ +    +TVS  +  ++ K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 248 RQRHPRVRYAKVHLYNNYTRN 268
             R P  R    H+YNNY  N
Sbjct: 205 ESRVPLQRRGLSHIYNNYFNN 225

>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 147 GLRLKECEHVIICNLE--FEGGKGPDVDAIQIKPKSKHIWIDRCSL----------RDYD 194
           G+ +K+   V++ N+   +  G   D D I++   S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 195 ---DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251
              +  +DI   S  +TVS  +     K   +G D S  +D    +T HH +++    R 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 252 PRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           P  R   VH YNN   N     +    + Q   + N +E     +  +Y
Sbjct: 220 PLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY 268

>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 147 GLRLKECEHVIICNLE--FEGGKGPDVDAIQIKPKSKHIWIDRCSL----------RDYD 194
           G+ +K+   V++ N+   +  G   D D I++   S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 195 ---DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251
              +  +DI   S  +TVS  +     K   +G D S  +D    +T HH +++    + 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNAKL 219
Query: 252 PRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           P  R   VH YNN   N     +    + Q   + N +E     +  +Y
Sbjct: 220 PLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	3e-81
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	1e-80
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	6e-75
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	4e-62
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	8e-62
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	4e-61
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	3e-60
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	3e-54
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	3e-54
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	1e-53
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	1e-50
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	3e-06
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	6e-05
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	1e-04
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	7e-04

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340

 Score =  251 bits (641), Expect = 3e-81
 Identities = 81/321 (25%), Positives = 133/321 (41%), Gaps = 41/321 (12%)

Query: 66  ALAGQAEGFGRL--------AIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVS 117
           +L  +  GF  +         +GGL G +  V T  +     L +    +    IV + +
Sbjct: 1   SLNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIVVDGT 55

Query: 118 GTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG--------GKGP 169
                +  + V S KTI G     K+ G GL +K+ ++VII N+ FEG        GK  
Sbjct: 56  IVFEPKREIKVLSDKTIVGIND-AKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKY 114

Query: 170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH 229
           D D I ++  S HIWID  +  + +DG +DI + S  ITVS   F  HDK  L+G+    
Sbjct: 115 DFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKE 173

Query: 230 VAD---RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNW----------GIYAVCA 276
             +   +  +VT HH +F    QR PR+R+   H++NN+               IY V +
Sbjct: 174 DPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVAS 233

Query: 277 SVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLS----SLKLKAGLM 332
           ++ ++++ + N +      MA   +    +         +      +        +  + 
Sbjct: 234 AMGAKVHVEGNYFMGYGAVMAEAGIAFLPTRIMGPVEGYLTLGEGDAKNEFYYCKEPEVR 293

Query: 333 AEAGEHNMFHPSEHYYTWTLL 353
                     P E YY +TL 
Sbjct: 294 PVEEGKPALDPRE-YYDYTLD 313

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346

 Score =  249 bits (637), Expect = 1e-80
 Identities = 101/314 (32%), Positives = 145/314 (46%), Gaps = 28/314 (8%)

Query: 61  DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEV 116
           D +   LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  
Sbjct: 15  DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQ 74

Query: 117 SGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVIICNLEFEGGK------- 167
           +  I L+  L V+ +KTIDGRG  V L   G  L +++  HVI+ +L   G         
Sbjct: 75  NMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDV 134

Query: 168 ------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215
                         D DAI ++    + WID  SL D  DGLID+T  ST IT+S  HF 
Sbjct: 135 LVSESIGVEPVHAQDGDAITMRN-VTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFF 193

Query: 216 SHDKTMLIGADPSHVADRCIRVTIHHC-FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAV 274
           +H K ML+G D ++  D+ ++VT+    F     QR PR RY  VH+ NN    W IYA+
Sbjct: 194 NHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI 253

Query: 275 CASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKE-EARTDCIRSEGDLSSLKLKAGLMA 333
             S +  I S+ N + A  +    +       +          RS  D            
Sbjct: 254 GGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSG 313

Query: 334 EAGEHNMFHPSEHY 347
           +  E N+++ +E +
Sbjct: 314 KTEETNIYNSNEAF 327

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326

 Score =  234 bits (597), Expect = 6e-75
 Identities = 68/286 (23%), Positives = 116/286 (40%), Gaps = 34/286 (11%)

Query: 68  AGQAEGFGRL---AIGGLHGPLYHVTTLAD--DGPGSLREGCRMKEPLWIVFEVSGTIHL 122
           +   +G+  +     GG  G + + +T A       +        EPL I   V+GTI  
Sbjct: 1   SNGPQGYASMNGGTTGGAGGRVEYASTGAQIQQLIDNRSRSNNPDEPLTIY--VNGTITQ 58

Query: 123 RSH-------------LSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGP 169
            +                     +I G G   +  G G+RL    ++II N+     +  
Sbjct: 59  GNSPQSLIDVKNHRGKAHEIKNISIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREG 118

Query: 170 DVDAIQIKPKSKHIWIDRCSL---------RDYDDGLIDITRESTDITVSRCHFSSHDKT 220
           +  AI++   SK++WID              DY DGL+D+ R +  ITVS   F +H KT
Sbjct: 119 EGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKT 178

Query: 221 MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDS 280
           ML+G   +       ++T HH +F+    R P +RYA VH++NNY ++    A+ + V +
Sbjct: 179 MLVGHTDNASLAP-DKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGA 237

Query: 281 QIYSQCNIYEAG----QKKMAFKYLTEKASDKEEARTDCIRSEGDL 322
           +++ + N ++                          T      G++
Sbjct: 238 RVFVENNYFDNVGSGQADPTTGFIKGPVGWFYGSPSTGYWNLRGNV 283

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355

 Score =  201 bits (513), Expect = 4e-62
 Identities = 77/343 (22%), Positives = 125/343 (36%), Gaps = 62/343 (18%)

Query: 63  SLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL 122
           +  A  G A   G    G        V  ++D      ++     +    + +V+G I +
Sbjct: 4   TDAATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKIIKVTGPIDI 58

Query: 123 --------------RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG--- 165
                         RS +S+ S  TI G G   K T   L +K  ++VI+ NL  E    
Sbjct: 59  SGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVD 118

Query: 166 ---------GKGPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLID 199
                    G   + DA  I   S ++W+D  ++ D                   DG +D
Sbjct: 119 VAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALD 177

Query: 200 ITRESTDITVSRCHFSSHDKTMLIGADPSHVADR--CIRVTIHHCFFDGTRQRHPRVRYA 257
           I + S  +T+S   F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+ 
Sbjct: 178 IKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFG 237

Query: 258 KVHLYNNYTRN-------WGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEE 310
            +H YNN             +Y+        I S+ N +     K       E +  K+ 
Sbjct: 238 SIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKNPECSIVKQ- 296

Query: 311 ARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWTLL 353
                + S+   S +        +      + P+   Y ++  
Sbjct: 297 -FNSKVFSDKG-SLVNGSTTTKLDTCGLTAYKPTL-PYKYSAQ 336

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330

 Score =  200 bits (509), Expect = 8e-62
 Identities = 57/315 (18%), Positives = 96/315 (30%), Gaps = 39/315 (12%)

Query: 71  AEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRS------ 124
             G+G    GG +    +V T                    +V   +G     +      
Sbjct: 2   PVGYGAGTTGGGNKVPVNVATFEAMQSAI----DSYSGSGGLVLNYTGKFDFGTIKDVCA 57

Query: 125 ---------HLSVSSYKTIDGRGQRVKLTGKGLRL-KECEHVIICNLEFEGGKGP-DVDA 173
                     +   S  TI G          G+R+     +VII N+     +G  D D+
Sbjct: 58  QWKLPAKTVQIKNKSDVTIKGAN--GSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADS 115

Query: 174 IQI----KPKSKHIWIDRCSL-----------RDYDDGLIDITRESTDITVSRCHFSSHD 218
           I +      +   IW+D  ++               DG ID+ +    +TVS  +  ++ 
Sbjct: 116 ISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQ 175

Query: 219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASV 278
           K  L G   S   +   R T HH  F+    R P  R+   H+YNNY  N     +   +
Sbjct: 176 KVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRM 235

Query: 279 DSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEH 338
                 + N +E  +  +  +  +E                                   
Sbjct: 236 GGIAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSGITWGTPDGSKPYANATNWIST 295

Query: 339 NMFHPSEHYYTWTLL 353
            +F  S   Y +T+ 
Sbjct: 296 KVFPESL-GYIYTVT 309

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361

 Score =  199 bits (507), Expect = 4e-61
 Identities = 62/301 (20%), Positives = 106/301 (35%), Gaps = 55/301 (18%)

Query: 71  AEGFGRLAIGGLHGPLYHVTTLADD--------GPGSLREGCRMKEPLWIVFEVSGTIHL 122
             GF           +Y VT +++             ++    +       +        
Sbjct: 20  QNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKA 79

Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECE---HVIICNLEFE------------GGK 167
           RS +++ +  T+ G G   K     L +   +   +VII N+  +             G 
Sbjct: 80  RSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGW 139

Query: 168 GPDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210
             + DA+ I   + H+WID  ++ D +                 DG +DI R S  +T+S
Sbjct: 140 NAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTIS 199

Query: 211 RCHFSSHDKTMLIGA-DPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
                 HDKTMLIG  D +   D+  + VT+ +  F+   +R PRVRY  +H +NN  + 
Sbjct: 200 NSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKG 259

Query: 269 -------WGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGD 321
                     Y+        + S+ N +              KA    +     I S+  
Sbjct: 260 DAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA------NLSASKACKVVKKFNGSIFSDNG 313

Query: 322 L 322
            
Sbjct: 314 S 314

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353

 Score =  197 bits (501), Expect = 3e-60
 Identities = 50/270 (18%), Positives = 88/270 (32%), Gaps = 39/270 (14%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMK-----EPLWIVFEVSGTI 120
              G A   G    G +      +  + +    +  +    K      PL I +  +   
Sbjct: 3   DTGGYAATAGGNVTGAVSKTATSMQDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDS 62

Query: 121 HLRSHLS---------------VSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEG 165
            + +  +                   K I   G        G+ +K+   V++ N+    
Sbjct: 63  LINAAAANICGQWSKDPRGVEIKEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGY 122

Query: 166 GKG--PDVDAIQIKPKSKHIWIDRCSLRDYD-------------DGLIDITRESTDITVS 210
             G   D D I++   S ++W+D   L   +             +  +DI   S  +TVS
Sbjct: 123 LPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVS 181

Query: 211 RCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG 270
             +     K  L G+  S   D    +T HH +++    R P  R   VH YNN   N  
Sbjct: 182 YNYIHGVKKVGLDGSSSS---DTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNIT 238

Query: 271 IYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
              +    + Q   + N +E     +  +Y
Sbjct: 239 GSGLNVRQNGQALIENNWFEKAINPVTSRY 268

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416

 Score =  183 bits (464), Expect = 3e-54
 Identities = 81/289 (28%), Positives = 120/289 (41%), Gaps = 43/289 (14%)

Query: 68  AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHL-RSHL 126
               +    +       P +       +   +      ++ PL      S      R  +
Sbjct: 69  LNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMV 128

Query: 127 SVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPD 170
            V S  +I G G+  K+ G G  +K  ++VII N+EFE                G    +
Sbjct: 129 YVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSE 188

Query: 171 VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCH 213
            D+I I+  S HIWID  +  D D                 DG +DI   S  IT+S   
Sbjct: 189 YDSISIEGSS-HIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNV 247

Query: 214 FSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI- 271
           F++HDK  LIGA  S +AD   +RVT+HH ++    QR PRVR+ +VH+YNNY     + 
Sbjct: 248 FTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLA 307

Query: 272 -----YAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDC 315
                YA    V SQIY+Q N +      +    + +  S  EE+  + 
Sbjct: 308 DYDFQYAWGVGVFSQIYAQNNYFSFD-WDIDPSLIIKVWSKNEESMYET 355

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359

 Score =  181 bits (460), Expect = 3e-54
 Identities = 52/314 (16%), Positives = 96/314 (30%), Gaps = 61/314 (19%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVT----------------------------------- 90
            + G AEGF     GG      + T                                   
Sbjct: 2   GVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTT 61

Query: 91  -----------TLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQ 139
                       +A +              + + ++ +G + +     V+S K+I G+G 
Sbjct: 62  GCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPIT----VNSNKSIVGQGT 117

Query: 140 RVKLTGKGLRL-KECEHVIICNLEFEGGKGPDV---DAIQIKPKSKHIWIDRCSL-RDYD 194
           +  + GKGLR+    ++VII N+         V   DAI +   S  +WID  +  R   
Sbjct: 118 KGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD-SDLVWIDHVTTARIGR 176

Query: 195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA----DRCIRVTIHHCFFDGTRQR 250
             ++  T     +T+S                  +           VT+   +F     R
Sbjct: 177 QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGR 236

Query: 251 HPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKE 309
            P+V+    +H  NN   N+  +A        + ++ N+++     +      +  S  +
Sbjct: 237 MPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPD 296

Query: 310 EARTDCIRSEGDLS 323
                   S    S
Sbjct: 297 ANTNQQCASVFGRS 310

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359

 Score =  180 bits (457), Expect = 1e-53
 Identities = 53/307 (17%), Positives = 93/307 (30%), Gaps = 53/307 (17%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVTT-------LADDGPG-------------------- 98
            ++G AEGF +   GG      +  T       L DD                       
Sbjct: 2   GVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGT 61

Query: 99  ---------------SLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKL 143
                             + C   EP      V         ++V+S K++ G G    +
Sbjct: 62  GCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAI 121

Query: 144 TGKGLRL-KECEHVIICNLEFEGGKGPDV---DAIQIKPKSKHIWIDRCSL-RDYDDGLI 198
            GKGLR+    E++II N+         V   DAI +      +WID  +  R      +
Sbjct: 122 KGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGRQHYV 180

Query: 199 DITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTRQRHPRV 254
             T     ++++  +               +    +      VT+   +   T  R P+V
Sbjct: 181 LGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240

Query: 255 RYAK-VHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEART 313
           +    +H  NNY  +   +A        + ++ N+++     +              A  
Sbjct: 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGE 300

Query: 314 DCIRSEG 320
            C    G
Sbjct: 301 VCSTYLG 307

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399

 Score =  173 bits (439), Expect = 1e-50
 Identities = 62/280 (22%), Positives = 99/280 (35%), Gaps = 47/280 (16%)

Query: 69  GQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSV 128
            +  G             Y    L    P +  +                    R  + +
Sbjct: 70  LKPLGLNDYKDPEYDLDKY----LKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDI 125

Query: 129 SSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVD 172
            +  TI G G   K+ G   ++K  ++VII N+EF+                G      D
Sbjct: 126 PANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYD 184

Query: 173 AIQIKPKSKHIWIDRCSLR-----------------DYDDGLIDITRESTDITVSRCHFS 215
            I I   + HIWID C+                    + DG  D +  +  IT+S  ++ 
Sbjct: 185 NITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243

Query: 216 SHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG---- 270
            HDK+ + G+  S  +D   +++T+HH  +    Q  PRVR+ +VH+YNNY         
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSS 303

Query: 271 ---IYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASD 307
               YA      S+IY+Q N+ +      A          
Sbjct: 304 YPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGT 343

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGL---------I 198
           +   E  +V+   L  +     + D I+    S+++ +        DD +          
Sbjct: 357 IMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDDCINFAAGTGEKA 415

Query: 199 DITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR 248
                     +   +F      ++ G   SH       +   +     T 
Sbjct: 416 QEQEPMKGAWLFNNYFRMGHGAIVTG---SHTGAWIEDILAENNVMYLTD 462

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Length = 506

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 22/173 (12%)

Query: 118 GTIHLRSHLSVSSYKTIDG-RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGP-----DV 171
             + + +        TI      +V  TG        EH+I+  + F+ G          
Sbjct: 57  VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSH 116

Query: 172 DAIQIKPKSKHIWIDRCSLRDYDDG--------LIDITRESTDITVSRCHF---SSHDKT 220
               +     +  I  C    +D+         L +  +      +  C F    + D+ 
Sbjct: 117 GPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQV 176

Query: 221 MLIGADPSHVAD-----RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
           + +      + D       +   + HCFF   ++        ++  Y N    
Sbjct: 177 INLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGR 229

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 153 CEHVIICNLEFEG-GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI-----TRESTD 206
            +         +      + D I     SK+I I   ++   DD  + I       E+ +
Sbjct: 182 GDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAYKGRAETRN 239

Query: 207 ITVSRCHF-SSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247
           I++    F + H   M IG++   V +    VT+     +GT
Sbjct: 240 ISILHNDFGTGH--GMSIGSETMGVYN----VTVDDLKMNGT 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	100.0
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	100.0
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	100.0
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	100.0
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	100.0
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	100.0
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	100.0
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	100.0
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	100.0
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	100.0
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	100.0
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	98.85
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	98.76
2inu_A	410	Insulin fructotransferase; right-handed parallel b	98.74
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	98.73
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	98.7
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	98.69
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.34
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.3
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.28
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	98.26
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.24
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.23
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.19
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.18
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.16
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.12
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.06
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	98.05
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.02
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	97.97
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.93
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	97.91
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	97.89
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	97.88
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	97.8
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	97.77
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	97.76
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	97.74
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	97.69
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	97.6
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.59
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.53
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.48
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	97.44
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	97.33
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.27
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.26
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	97.22
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.01
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	96.97
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	96.89
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	96.87
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	96.86
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	96.85
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	96.83
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	96.77
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	96.75
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	96.52
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	96.41
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	96.39
2inu_A	410	Insulin fructotransferase; right-handed parallel b	96.31
3grh_A	422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	96.14
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	95.96
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	94.94
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	94.64
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	93.04
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	91.22
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	84.06

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=100.00  E-value=1.8e-72  Score=556.40  Aligned_cols=296  Identities=35%  Similarity=0.511  Sum_probs=261.7

Q ss_pred             cccccccCCcccccCCCCCCCCCceEEecCCCCC----CChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeee
Q 017716           62 CSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGR  137 (367)
Q Consensus        62 ~~~~ala~~a~Gfg~~ttGG~gG~v~~VT~l~d~----gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G~  137 (367)
                      .++|+|++||||||++||||+||+||+||+|+|+    +|||||+||++++|+||||+++|+|+|+++|.|.|||||+|+
T Consensus        16 ~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~   95 (346)
T 1pxz_A           16 QNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGR   95 (346)
T ss_dssp             TCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEECT
T ss_pred             hhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEecCccEEecCCeEEEcc
Confidence            5688888999999999999999999999999998    899999999999999999999999999999999999999999


Q ss_pred             ccceEEeC--CcEEEeeeccEEEeeeEEeCCC-------------------CCCCCceEecCCCceEEEEceeeecCCCC
Q 017716          138 GQRVKLTG--KGLRLKECEHVIICNLEFEGGK-------------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDG  196 (367)
Q Consensus       138 G~gi~I~G--~gi~i~~a~NVIIRnL~i~~g~-------------------~~d~DaI~i~~~s~nVWIDHcsfs~~~Dg  196 (367)
                      |..++|.|  .+|+|++++|||||||+|+...                   ..++|||.|+ ++++||||||+|+|+.||
T Consensus        96 ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg  174 (346)
T 1pxz_A           96 GADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDG  174 (346)
T ss_dssp             TSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSSE
T ss_pred             CCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEe-cCceEEEEeeEEecCCCC
Confidence            99999997  6899999999999999999753                   2578999998 899999999999999999


Q ss_pred             ceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEeccee-cCCCCCCCccccCeeEEEcceEECcccceee
Q 017716          197 LIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFF-DGTRQRHPRVRYAKVHLYNNYTRNWGIYAVC  275 (367)
Q Consensus       197 lidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f-~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~  275 (367)
                      ++|+++++++||||||+|++|+|++|||++|+...|+.++||||||+| .++.+|+||+|+|++|++||||++|..|+++
T Consensus       175 ~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i~  254 (346)
T 1pxz_A          175 LIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIG  254 (346)
T ss_dssp             EEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEE
T ss_pred             cEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEEe
Confidence            999999999999999999999999999999887778889999999999 9999999999999999999999999999999


Q ss_pred             ecCCceEEEEceeEecCCc---ceeeeeeccccCCcccCCCcEEEecCCeeeccccccccccCCCCcccCCCCCCcccc-
Q 017716          276 ASVDSQIYSQCNIYEAGQK---KMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT-  351 (367)
Q Consensus       276 ~~~~a~i~~e~N~F~~g~~---~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~~-  351 (367)
                      +++++++++|+|||++++.   +.+++++...  ...++..|+|++++|+|+||+.........+...|.+.|.|+.+. 
T Consensus       255 ~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~--~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~~y~~~~~~~~~~~  332 (346)
T 1pxz_A          255 GSSNPTILSEGNSFTAPSESYKKEVTKRIGCE--SPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENG  332 (346)
T ss_dssp             EESCCEEEEESCEEECCSCGGGCBSEEECSCS--CHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTTTCCCCCCG
T ss_pred             ccCCceEEEECCEEECCCCCcccccEEEeccC--CccccccccEecCCCeEEeceEecCCCCCccCCCCCcccccccCCH
Confidence            9999999999999999874   4555543211  012456789999999999999876533222333588888887776 


Q ss_pred             ----eeecccCCc
Q 017716          352 ----LLQRCTGWQ  360 (367)
Q Consensus       352 ----~~~~~ag~q  360 (367)
                          -+..+||+.
T Consensus       333 ~~v~~~~~~aG~~  345 (346)
T 1pxz_A          333 NAAPQLTKNAGVV  345 (346)
T ss_dssp             GGHHHHTTTCSSC
T ss_pred             HHHHHHhhhccCC
Confidence                345688864

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=100.00  E-value=1.4e-69  Score=531.51  Aligned_cols=273  Identities=26%  Similarity=0.409  Sum_probs=242.8

Q ss_pred             CcccccC---CCCCCCCCceEEecCCCCCCChhHHHhhh-------cCCCeEEEEEeceEEEec----ceeEec------
Q 017716           70 QAEGFGR---LAIGGLHGPLYHVTTLADDGPGSLREGCR-------MKEPLWIVFEVSGTIHLR----SHLSVS------  129 (367)
Q Consensus        70 ~a~Gfg~---~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~-------~~~P~~IVf~vsGtI~l~----~~l~V~------  129 (367)
                      +|+|||+   +||||+||+||+||||+|     ||+||+       +++||+|+  |+|+|+|+    ++|.|.      
T Consensus         3 ~~~Gfa~~nggTtGG~gG~vv~Vttl~d-----L~~Al~~~~~~~~~~~p~iI~--V~G~I~l~~~~~~~i~v~~~~~~~   75 (326)
T 3vmv_A            3 GPQGYASMNGGTTGGAGGRVEYASTGAQ-----IQQLIDNRSRSNNPDEPLTIY--VNGTITQGNSPQSLIDVKNHRGKA   75 (326)
T ss_dssp             CCSGGGGSTTCCCTTTTSEEEEESSHHH-----HHHHHHHHHHSSCTTSCEEEE--ECSEEESTTCSSSSEEESCTTCTT
T ss_pred             CCceeeecCCCCccCCCCeEEEECCHHH-----HHHHHhhcccccCCCCCEEEE--EeeEEecCCCCCceEEEecccccc
Confidence            6899999   599999999999999999     999999       89999887  99999998    789998      


Q ss_pred             ---cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecC---------CCCc
Q 017716          130 ---SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY---------DDGL  197 (367)
Q Consensus       130 ---snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~---------~Dgl  197 (367)
                         |||||+|+|.+++|.|.+|+|++++|||||||+|+.+...++|+|+|+..++|||||||+|+|+         .||+
T Consensus        76 ~~~sn~TI~G~g~~~~i~G~gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl  155 (326)
T 3vmv_A           76 HEIKNISIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGL  155 (326)
T ss_dssp             SCEEEEEEEECTTCCEEESCCEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCS
T ss_pred             cCCCCeEEEecCCCeEEeCcEEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcc
Confidence               9999999999999999999999999999999999998878899999983389999999999975         4999


Q ss_pred             eEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeec
Q 017716          198 IDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCAS  277 (367)
Q Consensus       198 idi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~  277 (367)
                      +|+++++++||||||+|++|+|+||||++|+... .+++||||||||+++.+|+||+|+|++|++||||++|..|+++++
T Consensus       156 ~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~-~~~~vT~~~N~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~  234 (326)
T 3vmv_A          156 VDMKRNAEYITVSWNKFENHWKTMLVGHTDNASL-APDKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSR  234 (326)
T ss_dssp             EEECTTCEEEEEESCEEEEEEECEEECSSSCGGG-CCEEEEEESCEEEEEEECTTEEESCEEEEESCEEEEESSCSEEEE
T ss_pred             eEecCCCceEEEEceEEecCceEEEECCCCCCcc-cCccEEEEeeEecCCcCcCCcccCCcEEEEccEEECCCceEEeec
Confidence            9999999999999999999999999999876543 135899999999999999999999999999999999999999999


Q ss_pred             CCceEEEEceeEecCC------------cceeeeeeccccCCcccCCCcEEEecCCeeeccccccccccCCCCcccCCCC
Q 017716          278 VDSQIYSQCNIYEAGQ------------KKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSE  345 (367)
Q Consensus       278 ~~a~i~~e~N~F~~g~------------~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~~~~~~~~~~P~~  345 (367)
                      +++++++|+|||+++.            ++..+.        .+++..|||..+++.|+|++...    ..+++.|.|+|
T Consensus       235 ~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~g~~~~~~n~~~n~~~~~----~~~~~~~~p~Y  302 (326)
T 3vmv_A          235 VGARVFVENNYFDNVGSGQADPTTGFIKGPVGWF--------YGSPSTGYWNLRGNVFVNTPNSH----LNSTTNFTPPY  302 (326)
T ss_dssp             TTCEEEEESCEEEEESCCSBCTTTCCBCSSEECC--------SCSSSBCEEEEESCEEESSCCTT----CCCCCCCCCSS
T ss_pred             CCcEEEEEceEEECCcCccccccccccccceeec--------cCCCCceEEEEECCeEccCcCcc----cCCCccccccC
Confidence            9999999999999982            222211        23568899999999999875433    35678999998


Q ss_pred             CCcccc------eeecccCCccc
Q 017716          346 HYYTWT------LLQRCTGWQDV  362 (367)
Q Consensus       346 ~Y~~~~------~~~~~ag~q~~  362 (367)
                      .|+...      +|+..||..-+
T Consensus       303 ~y~l~~a~~V~~~V~~~AG~Gk~  325 (326)
T 3vmv_A          303 SYQVQSATQAKSSVEQHSGVGVI  325 (326)
T ss_dssp             CCCCCCHHHHHHHHHHHCSSSSC
T ss_pred             eeecCCHHHhhHHHhccCCCccc
Confidence            887665      88899998653

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=100.00  E-value=4.9e-69  Score=529.91  Aligned_cols=284  Identities=28%  Similarity=0.397  Sum_probs=241.5

Q ss_pred             cccc-CCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec--ceeEeccCcceeeeccce
Q 017716           65 RALA-GQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR--SHLSVSSYKTIDGRGQRV  141 (367)
Q Consensus        65 ~ala-~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~--~~l~V~snkTI~G~G~gi  141 (367)
                      ..|| -.|||||++||||+||++|+||||+|     ||+||++++||||+  |+|+|+++  .+|.|.|||||+|+|.. 
T Consensus         7 ~G~As~~AeG~g~~ttGG~gG~v~~VTtl~d-----Lr~al~~~~PriIv--v~G~I~~~~~~~l~v~snkTI~G~ga~-   78 (340)
T 3zsc_A            7 VGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIV--VDGTIVFEPKREIKVLSDKTIVGINDA-   78 (340)
T ss_dssp             CSGGGCCCSSCTTSCCTTTTSEEEEECSHHH-----HHHHHTSSSCEEEE--EEEEEEEEEEEEEEECSSEEEEEEEEE-
T ss_pred             ceeecccccccCCCCccCCCceEEEeCCHHH-----HHHHHhCCCCEEEE--ECcEEEeCCcceEEecCCCEEEeccCc-
Confidence            3455 35999999999999999999999999     99999999999998  67999998  89999999999999877 


Q ss_pred             EEeCCcEEEeeeccEEEeeeEEeCCCC--------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCce
Q 017716          142 KLTGKGLRLKECEHVIICNLEFEGGKG--------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH  213 (367)
Q Consensus       142 ~I~G~gi~i~~a~NVIIRnL~i~~g~~--------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~  213 (367)
                      +|.|.+|+|++++|||||||+|+.+..        .++|||+|+ +++|||||||+|+|+.||++|+++++++||||||+
T Consensus        79 ~I~G~Gi~I~~a~NVIIrnl~i~~~~~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn~  157 (340)
T 3zsc_A           79 KIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNK  157 (340)
T ss_dssp             EEEEEEEEEESCEEEEEESCEEECCCCTTCTTSCSSCCCSEEEE-SCEEEEEESCEEESCSSCSEEEETTCEEEEEESCE
T ss_pred             EEecCceEEEcCceEEEeCeEEECCccccCccCCcCCCCeEEEe-cCCcEEEEeeeeccCCccceEEecCCceEEEECcE
Confidence            999999999999999999999998741        278999998 79999999999999999999999999999999999


Q ss_pred             ecCCCceeEecCCCCCC--CCc-ceeEEEecceecCCCCCCCccccCeeEEEcceEEC----------cccceeeecCCc
Q 017716          214 FSSHDKTMLIGADPSHV--ADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN----------WGIYAVCASVDS  280 (367)
Q Consensus       214 f~~H~k~~LiG~sd~~~--~d~-~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n----------~~~yai~~~~~a  280 (367)
                      |++|+|+||+|++|+..  .|. .++||||||||+++.+|+||+|+|++|++||||++          |..|++++++++
T Consensus       158 f~~h~k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~~a  237 (340)
T 3zsc_A          158 FVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGA  237 (340)
T ss_dssp             EESCSBCCEECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEESSEEEEESCEEECCCCCSCSSCCSCCEEEEEETTC
T ss_pred             eccCceeeEeCcCCCCccccccCCcEEEEECeEecCCCCCCCcccCCeEEEEccEEECCccccccccceeeeeEecCCCC
Confidence            99999999999998653  443 58999999999999999999999999999999999          999999999999


Q ss_pred             eEEEEceeEecCCc-----ceeeeeeccccCCcccCCCcEEEecC----CeeeccccccccccCCCCcccCCCCCCcccc
Q 017716          281 QIYSQCNIYEAGQK-----KMAFKYLTEKASDKEEARTDCIRSEG----DLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT  351 (367)
Q Consensus       281 ~i~~e~N~F~~g~~-----~~v~~~~~~~~~~~~~~~~g~~~~~g----n~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~~  351 (367)
                      +|++|+|||++...     +.++....     ..++..|||..++    |.|.++...........+.+|.|+.+|+|.-
T Consensus       238 ~i~~E~N~F~~~~~~~~~~~~~~p~~~-----~~~~~~G~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~pY~Y~l  312 (340)
T 3zsc_A          238 KVHVEGNYFMGYGAVMAEAGIAFLPTR-----IMGPVEGYLTLGEGDAKNEFYYCKEPEVRPVEEGKPALDPREYYDYTL  312 (340)
T ss_dssp             EEEEESCEEECSCHHHHHTTCCBEEEE-----ECTTTBCEEEECCGGGCCEEESBCCCCCBCSSTTSCSCCGGGTCCCCC
T ss_pred             EEEEECcEEECCCcccccccccccccc-----cCCCCceEEEecCcccceeeccCCCCccccccCCccccccCCCceeec
Confidence            99999999999876     11111111     1236789999999    8998765433221122345666665665544


Q ss_pred             --------eeecccCCccc
Q 017716          352 --------LLQRCTGWQDV  362 (367)
Q Consensus       352 --------~~~~~ag~q~~  362 (367)
                              .|+..||..-+
T Consensus       313 ~~a~~v~~~V~~~AG~gk~  331 (340)
T 3zsc_A          313 DPVQDVPKIVVDGAGAGKL  331 (340)
T ss_dssp             CCGGGHHHHHHHHCSTTCC
T ss_pred             CcHHHhhHHHhhcCCCCee
Confidence                    88899997543

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=100.00  E-value=1.3e-66  Score=511.61  Aligned_cols=273  Identities=20%  Similarity=0.252  Sum_probs=234.7

Q ss_pred             CcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhc---CCCeEEEEEeceEEEecc---------------eeEeccC
Q 017716           70 QAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRM---KEPLWIVFEVSGTIHLRS---------------HLSVSSY  131 (367)
Q Consensus        70 ~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~---~~P~~IVf~vsGtI~l~~---------------~l~V~sn  131 (367)
                      +|||||++||||++|++|+|||++|     ||+||+.   ++||||+|  +|+|++.+               +|+|.||
T Consensus         1 ga~Gfa~~ttGG~gg~~~~Vtt~~~-----L~~al~~~~~~~p~iI~~--~G~i~~~~~~~~c~~~~~~~~~~~l~v~sn   73 (330)
T 2qy1_A            1 GPVGYGAGTTGGGNKVPVNVATFEA-----MQSAIDSYSGSGGLVLNY--TGKFDFGTIKDVCAQWKLPAKTVQIKNKSD   73 (330)
T ss_dssp             CCCSTTTTCCTTTTSCCEEECSHHH-----HHHHHHHSCSSSCEEEEE--CCBCCGGGCCCGGGSTTSCCCEEEEESCCS
T ss_pred             CCceeecCCCCCCCceEEEcCCHHH-----HHHHHhccCCCCCEEEEE--ccEEecccccccccccccccceeEEEcCCC
Confidence            5899999999999999999999997     9999985   89999996  79999975               7888999


Q ss_pred             cceeeeccceEEeCCcEEEe-eeccEEEeeeEEeCCCC-CCCCceEecC----CCceEEEEceeeecCC-----------
Q 017716          132 KTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGGKG-PDVDAIQIKP----KSKHIWIDRCSLRDYD-----------  194 (367)
Q Consensus       132 kTI~G~G~gi~I~G~gi~i~-~a~NVIIRnL~i~~g~~-~d~DaI~i~~----~s~nVWIDHcsfs~~~-----------  194 (367)
                      |||+|+  .++|.|.+|+|+ +++|||||||+|+.+.. +++|+|+|++    .++|||||||+|+|..           
T Consensus        74 ~TI~G~--~a~i~g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~  151 (330)
T 2qy1_A           74 VTIKGA--NGSAANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASF  151 (330)
T ss_dssp             EEEEEC--TTCBBSSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSS
T ss_pred             eEEECC--CcEEeeeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCccee
Confidence            999886  467899999999 89999999999998764 4789999984    5999999999999876           


Q ss_pred             CCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECccccee
Q 017716          195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAV  274 (367)
Q Consensus       195 Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai  274 (367)
                      ||+||+++++++||||||+|++|+|+||+|++|+...|+.++||||||||+++.+|+||+|+|++|++||||++|..|++
T Consensus       152 Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~~vT~h~N~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~i  231 (330)
T 2qy1_A          152 DGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGI  231 (330)
T ss_dssp             CCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGCEEEEESCEEEEEEECTTEEESSEEEEESCEEEEECSCSE
T ss_pred             ecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCceEEEECcEEcCCCCCCCceecceEEEEeeEEEcccceEe
Confidence            99999999999999999999999999999999887777678999999999999999999999999999999999999999


Q ss_pred             eecCCceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeec--cccccccc--------cCCCCcccC--
Q 017716          275 CASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSL--KLKAGLMA--------EAGEHNMFH--  342 (367)
Q Consensus       275 ~~~~~a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~n--g~~~~~~~--------~~~~~~~~~--  342 (367)
                      +++++++|++|+|||++++.+...+         ++...|+|..++| |++  ++......        ...+...|.  
T Consensus       232 ~~~~~~~i~~e~N~F~~~~~p~~~~---------~~~~~g~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (330)
T 2qy1_A          232 NVRMGGIAKIESNYFENIKNPVTSR---------DSSEIGYWDLINN-YVGSGITWGTPDGSKPYANATNWISTKVFPES  301 (330)
T ss_dssp             EEETTCEEEEESCEEEEEESSEEEC---------SSSSBCEEEEESC-EECSCEECCCCSSSSCCEECTTCCCSSCCCSC
T ss_pred             ccCCCcEEEEEccEEECCCCceeec---------cCCCceeEEEeCC-cccccccccccCcccccccccccCcccccccC
Confidence            9999999999999999987654321         2346789999999 887  43222111        112446788  


Q ss_pred             CCCCCcccc------eeecccCCcc
Q 017716          343 PSEHYYTWT------LLQRCTGWQD  361 (367)
Q Consensus       343 P~~~Y~~~~------~~~~~ag~q~  361 (367)
                      |+|.|+..+      .|+.+||+.-
T Consensus       302 ~~Y~y~~~~a~~V~~~V~~~AGag~  326 (330)
T 2qy1_A          302 LGYIYTVTPAAQVKAKVIATAGAGK  326 (330)
T ss_dssp             CCSCCCCCCGGGHHHHHHHHCSTTS
T ss_pred             CCceeeeCCHHHHHHhhHhccCCCc
Confidence            555565555      7889999754

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=100.00  E-value=3.4e-64  Score=507.32  Aligned_cols=285  Identities=32%  Similarity=0.477  Sum_probs=238.2

Q ss_pred             ccccccccCCcccccC---CCCCCCCCc---eEEecCCCCCCChhHHHhhhcC--------CCeEEEEEeceEEEecc--
Q 017716           61 DCSLRALAGQAEGFGR---LAIGGLHGP---LYHVTTLADDGPGSLREGCRMK--------EPLWIVFEVSGTIHLRS--  124 (367)
Q Consensus        61 d~~~~ala~~a~Gfg~---~ttGG~gG~---v~~VT~l~d~gpGSLr~Ai~~~--------~P~~IVf~vsGtI~l~~--  124 (367)
                      |..++.|+ +|+|||+   +||||++|+   ||+|||++|     |++||.++        +||+|+  |+|+|++..  
T Consensus         2 ~~~~~~~~-~~~GfA~~~~gTTGG~~a~~~~v~tVtt~ae-----L~~al~~~~~~~~~~~~priI~--V~GtId~~~~~   73 (416)
T 1vbl_A            2 ELGHEVLK-PYDGWAAYGEGTTGGAMASPQNVFVVTNRTE-----LIQALGGNNHTNQYNSVPKIIY--VKGTIDLNVDD   73 (416)
T ss_dssp             CGGGCCCC-TTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHTTSCTTGGGGCCSCEEEE--ECSEEESSBCT
T ss_pred             CccccccC-CCcceeecCCCCcCCCCCccccEEEeCCHHH-----HHHHHhccccccccCCCCEEEE--ECCEEecccCC
Confidence            44577777 7999999   999999995   899999999     99999864        899988  899999741  


Q ss_pred             -----------------------------------------------------eeEeccCcceeeeccceEEeCCcEEEe
Q 017716          125 -----------------------------------------------------HLSVSSYKTIDGRGQRVKLTGKGLRLK  151 (367)
Q Consensus       125 -----------------------------------------------------~l~V~snkTI~G~G~gi~I~G~gi~i~  151 (367)
                                                                           +|.|.|||||+|+|.+++|.|.+|+|+
T Consensus        74 ~g~~~~c~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~  153 (416)
T 1vbl_A           74 NNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIK  153 (416)
T ss_dssp             TSCBCCHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEECTTCCEEESCEEEEE
T ss_pred             CCccccccccccCCcchhhhhhhhCccccccccCCCCcccccccccccccceeEEEeCCCeeEEecCCCeEEecCEEEee
Confidence                                                                 578899999999999999999999999


Q ss_pred             eeccEEEeeeEEeCCCC----------------CCCCceEecCCCceEEEEceeeecC-----------------CCCce
Q 017716          152 ECEHVIICNLEFEGGKG----------------PDVDAIQIKPKSKHIWIDRCSLRDY-----------------DDGLI  198 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~~----------------~d~DaI~i~~~s~nVWIDHcsfs~~-----------------~Dgli  198 (367)
                      +++|||||||+|+.+..                .++|+|+|+ +++|||||||+|+|+                 .||+|
T Consensus       154 ~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~DGl~  232 (416)
T 1vbl_A          154 NVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGAL  232 (416)
T ss_dssp             SCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSE
T ss_pred             cCceEEEeCeEEEcCccccccccccccccccccCCCceEEec-CCceEEEEccEEecCCCcccccccccCcceeecccce
Confidence            99999999999997531                367999998 899999999999996                 59999


Q ss_pred             EeecCCceEEEeCceecCCCceeEecCCCCCCCCc-ceeEEEecceecCCCCCCCccccCeeEEEcceEECcc------c
Q 017716          199 DITRESTDITVSRCHFSSHDKTMLIGADPSHVADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG------I  271 (367)
Q Consensus       199 di~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~-~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~------~  271 (367)
                      |+++++++||||||+|++|+|+||||++|+...|+ .++||||||||.++.+|+||+|+|++|+|||||+++.      .
T Consensus       233 Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~VT~hhN~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~  312 (416)
T 1vbl_A          233 DIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQ  312 (416)
T ss_dssp             EEESSCEEEEEESCEEEEEEECCEECSCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEEECTTSSSCCC
T ss_pred             eeecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCCceEEEEECcEecCCccCCcccccceEEEEcceEECCCCCcccce
Confidence            99999999999999999999999999998877765 4899999999999999999999999999999999653      4


Q ss_pred             ceeeecCCceEEEEceeEecCCc---ceeeeeeccccCCcccCCCcEEEecCCeee--cc-cccccc--------ccCCC
Q 017716          272 YAVCASVDSQIYSQCNIYEAGQK---KMAFKYLTEKASDKEEARTDCIRSEGDLSS--LK-LKAGLM--------AEAGE  337 (367)
Q Consensus       272 yai~~~~~a~i~~e~N~F~~g~~---~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~--ng-~~~~~~--------~~~~~  337 (367)
                      |+++++++++|++|+|||++++.   +.+.+.+.        .....+..+|+.|.  || ...++.        ...++
T Consensus       313 ya~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~~~--------~~~~~~~~~gn~~~~~ng~~~~d~~~~~n~~~~~~~~~  384 (416)
T 1vbl_A          313 YAWGVGVFSQIYAQNNYFSFDWDIDPSLIIKVWS--------KNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKK  384 (416)
T ss_dssp             CSEEEETTCEEEEESCEEEESSCCCGGGSEEEEC--------SSCCEEEEESCEEEETTEEEECCHHHHHHHHCSSCCEE
T ss_pred             eEeccCCCcEEEEECCEEECCCCCCccceeeeec--------cCCceEEecCCEEeecCCCcccccccccccCCcccccC
Confidence            99999999999999999999742   22333321        12334567788885  44 222221        11234


Q ss_pred             CcccCCCCCCcccc------eeecccCCccc
Q 017716          338 HNMFHPSEHYYTWT------LLQRCTGWQDV  362 (367)
Q Consensus       338 ~~~~~P~~~Y~~~~------~~~~~ag~q~~  362 (367)
                      ...|.|+++|+...      +|+.+||+..+
T Consensus       385 ~~~~~P~~~y~~~~a~~V~~~V~~~AGag~l  415 (416)
T 1vbl_A          385 EVTWKPMFYHVIHPTPSVPALVKAKAGAGNL  415 (416)
T ss_dssp             CCSCCCCCCSCCCCGGGHHHHHHHHCSTTCC
T ss_pred             CcccCCccccccCCHHHHHHHHhhccCCCcc
Confidence            56899998888766      89999998643

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=100.00  E-value=9.4e-64  Score=495.49  Aligned_cols=282  Identities=27%  Similarity=0.384  Sum_probs=228.0

Q ss_pred             ccCCcccccC---CCCCCCCCc-eEEecCCCCCCChhHHHhh--hcCCCeEEEEEeceEEEecc--------------ee
Q 017716           67 LAGQAEGFGR---LAIGGLHGP-LYHVTTLADDGPGSLREGC--RMKEPLWIVFEVSGTIHLRS--------------HL  126 (367)
Q Consensus        67 la~~a~Gfg~---~ttGG~gG~-v~~VT~l~d~gpGSLr~Ai--~~~~P~~IVf~vsGtI~l~~--------------~l  126 (367)
                      ...+++|||+   +||||++|+ +|+||||+|     ||+||  ..++||+|  .|+|+|++..              +|
T Consensus         4 ~~~~~~G~a~~~~gtTGG~~g~~v~~Vtt~~~-----L~~al~~~~~~p~VI--~V~GtI~~~~~~~~~s~~~~~~~~~l   76 (355)
T 1pcl_A            4 TDAATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKII--KVTGPIDISGGKAYTSFDDQKARSQI   76 (355)
T ss_pred             cccCCcceeecCCCCccCCCCceEEEeCCHHH-----HHHHHhhCCCCcEEE--EECCEEecCCccccccccccccceeE
Confidence            3356899998   799999998 799999999     99999  78899954  5999999964              68


Q ss_pred             EeccCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCC------------CCCCCceEecCCCceEEEEceeeecC-
Q 017716          127 SVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK------------GPDVDAIQIKPKSKHIWIDRCSLRDY-  193 (367)
Q Consensus       127 ~V~snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~------------~~d~DaI~i~~~s~nVWIDHcsfs~~-  193 (367)
                      .|.|||||+|+|.+++|.|.+|+|++++|||||||+|+.+.            ..++|+|+|+ +++|||||||+|+|+ 
T Consensus        77 ~v~sn~TI~G~G~~~~i~g~gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~-~s~nVWIDH~s~s~~~  155 (355)
T 1pcl_A           77 SIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGS  155 (355)
T ss_pred             EeCCCeEEEEecCCeEEecCEEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEec-CCCcEEEEeeEEeccc
Confidence            89999999999999999999999999999999999999753            1458999997 899999999999996 


Q ss_pred             ----------------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCC-CCc-ceeEEEecceecCCCCCCCccc
Q 017716          194 ----------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV-ADR-CIRVTIHHCFFDGTRQRHPRVR  255 (367)
Q Consensus       194 ----------------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~-~d~-~~~VT~hhN~f~~~~~R~Pr~r  255 (367)
                                      .||+||+++++++||||||+|++|+|+||+|++|+.. .|+ .++||||||||.++.+|+||+|
T Consensus       156 ~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR  235 (355)
T 1pcl_A          156 FTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVR  235 (355)
T ss_pred             cCccccccccCccccccccceeeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCCcccCCcee
Confidence                            6999999999999999999999999999999998765 564 5899999999999999999999


Q ss_pred             cCeeEEEcceEEC---cc----cceeeecCCceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeecccc
Q 017716          256 YAKVHLYNNYTRN---WG----IYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLK  328 (367)
Q Consensus       256 ~G~~Hv~NN~~~n---~~----~yai~~~~~a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~  328 (367)
                      +|++|+|||||++   |+    .|+++++++++|++|+|||+++..+.+.... ....-...+ .|......+.+++|+.
T Consensus       236 ~G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~gn~~~g~~  313 (355)
T 1pcl_A          236 FGSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGKN-PECSIVKQF-NSKVFSDKGSLVNGST  313 (355)
T ss_pred             cceEEEEcceEEcccCCCccccceEecCCCCcEEEEEccEEECCCcccccccc-ccccccccc-cCceEEecCccccCcC
Confidence            9999999999975   44    6899999999999999999998443333221 111001112 2222244556778876


Q ss_pred             c-cccccCCCCcccCCCCCCccc--c-------eeecccCCc
Q 017716          329 A-GLMAEAGEHNMFHPSEHYYTW--T-------LLQRCTGWQ  360 (367)
Q Consensus       329 ~-~~~~~~~~~~~~~P~~~Y~~~--~-------~~~~~ag~q  360 (367)
                      . .+.  .....+|+|+..|+|.  .       +|+.+||+-
T Consensus       314 ~~~~~--~~~~~~~~~~~~y~y~~~~~a~~v~~~V~~~AGag  353 (355)
T 1pcl_A          314 TTKLD--TCGLTAYKPTLPYKYSAQTMTSSLATSINNNAGYG  353 (355)
T ss_pred             ccccc--cCCccccccCCCCCccCCCcHHHHHHHHHhccCCC
Confidence            6 331  1223578876444442  2       889999974

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=100.00  E-value=3.1e-64  Score=499.70  Aligned_cols=270  Identities=24%  Similarity=0.393  Sum_probs=225.3

Q ss_pred             CcccccC---CCCCCCCC---ceEEecCCCCCCChhHHHhh-hcCCCeEEEEEeceEEEecc--------------eeEe
Q 017716           70 QAEGFGR---LAIGGLHG---PLYHVTTLADDGPGSLREGC-RMKEPLWIVFEVSGTIHLRS--------------HLSV  128 (367)
Q Consensus        70 ~a~Gfg~---~ttGG~gG---~v~~VT~l~d~gpGSLr~Ai-~~~~P~~IVf~vsGtI~l~~--------------~l~V  128 (367)
                      +++|||+   +||||++|   +||+|||++|     ||+|| .+++||+|+  |+|+|++..              +|.|
T Consensus        13 ~~~Gfa~~~~gtTGG~~g~~~~v~~Vtt~~d-----L~~al~~~~~p~vI~--V~GtI~~~~~~~~~s~~~~~~~~~l~v   85 (361)
T 1pe9_A           13 PTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKIIQ--IKGTIDISGGTPYTDFADQKARSQINI   85 (361)
T ss_dssp             CSSSGGGSSSCCCTTTTCCGGGEEEECSHHH-----HHHHHTTTTSCEEEE--ECSEEETTTTCCCCSHHHHHHHSEEEC
T ss_pred             CCCceeecCCCCcCCCCCccccEEEeCCHHH-----HHHHHhcCCCcEEEE--ECCEEecCCccccccccccccceeEEe
Confidence            5899995   89999998   7899999999     99999 899999765  899999964              7889


Q ss_pred             ccCcceeeeccceEEeCCcEEE---eeeccEEEeeeEEeCCCC------------CCCCceEecCC-CceEEEEceeeec
Q 017716          129 SSYKTIDGRGQRVKLTGKGLRL---KECEHVIICNLEFEGGKG------------PDVDAIQIKPK-SKHIWIDRCSLRD  192 (367)
Q Consensus       129 ~snkTI~G~G~gi~I~G~gi~i---~~a~NVIIRnL~i~~g~~------------~d~DaI~i~~~-s~nVWIDHcsfs~  192 (367)
                      .|||||+|+|.+++|.|.+|+|   ++++|||||||+|+.+..            .++|+|+|+ + ++|||||||+|+|
T Consensus        86 ~snkTI~G~G~~~~i~g~gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~-~~s~nVWIDHcs~s~  164 (361)
T 1pe9_A           86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNIT-NGAHHVWIDHVTISD  164 (361)
T ss_dssp             CSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEE-TTCEEEEEESCEEEC
T ss_pred             cCCcEEEccCCCeEEecCEEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEee-cCCceEEEEccEeec
Confidence            9999999999999999999999   789999999999997531            468999998 6 9999999999999


Q ss_pred             C-----------------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCC-CC-cceeEEEecceecCCCCCCCc
Q 017716          193 Y-----------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV-AD-RCIRVTIHHCFFDGTRQRHPR  253 (367)
Q Consensus       193 ~-----------------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~-~d-~~~~VT~hhN~f~~~~~R~Pr  253 (367)
                      +                 .||+||+++++++||||||+|++|+|+||||++|+.. .| +.++||||||||+++.+|+||
T Consensus       165 ~~~~~~~~~~~~G~~~~~~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~Pr  244 (361)
T 1pe9_A          165 GNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPR  244 (361)
T ss_dssp             TTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSE
T ss_pred             ccccccccccccCcceeeccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccccCcceEEEECeEEcCccccCcc
Confidence            6                 6999999999999999999999999999999998764 45 468999999999999999999


Q ss_pred             cccCeeEEEcceEEC---cc----cceeeecCCceEEEEceeEecCCcc-----eeeeeeccccCCcccCCCcEEEecCC
Q 017716          254 VRYAKVHLYNNYTRN---WG----IYAVCASVDSQIYSQCNIYEAGQKK-----MAFKYLTEKASDKEEARTDCIRSEGD  321 (367)
Q Consensus       254 ~r~G~~Hv~NN~~~n---~~----~yai~~~~~a~i~~e~N~F~~g~~~-----~v~~~~~~~~~~~~~~~~g~~~~~gn  321 (367)
                      +|+|++|+|||||++   |+    .|+++++++++|++|+|||++++.+     .+.+          ++....+...++
T Consensus       245 ~R~G~~Hv~NN~~~~~~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~~----------~~~~~~~~~~gn  314 (361)
T 1pe9_A          245 VRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVK----------KFNGSIFSDNGS  314 (361)
T ss_dssp             ESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEE----------ESSCCEEEEESC
T ss_pred             cccceEEEEcceEecccCCCccccceEecCCCCcEEEEECCEEECCCCccccCceeEE----------ecCCcEEEecCc
Confidence            999999999999974   44    6999999999999999999998422     1211          122222455555


Q ss_pred             eeeccccccccccCCCCcccCCCCCCccc--c-------eeecccCCc
Q 017716          322 LSSLKLKAGLMAEAGEHNMFHPSEHYYTW--T-------LLQRCTGWQ  360 (367)
Q Consensus       322 ~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~--~-------~~~~~ag~q  360 (367)
                       +++|+...+.. . ...+|+|+..|+|.  .       +|+.+||+.
T Consensus       315 -~~~g~~~~~~~-~-g~~~~~~~~~y~y~~~~~a~~V~~~V~~~AGag  359 (361)
T 1pe9_A          315 -VLNGSAVDLSG-C-GFSAYTSKIPYIYDVQPMTTELAQSITDNAGSG  359 (361)
T ss_dssp             -EETTEECCCTT-S-SCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTT
T ss_pred             -cccCcCcccCC-C-CccccccCCCCccccCCcHHHHHHHHHhccCCC
Confidence             45776554422 2 23578886555542  2       889999974

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=100.00  E-value=9.8e-64  Score=501.78  Aligned_cols=282  Identities=27%  Similarity=0.445  Sum_probs=236.2

Q ss_pred             ccccccccCCcccccC---CCCCCCCCc---eEEecCCCCCCChhHHHhh---hcCCCeEEEEEeceEEEecc-------
Q 017716           61 DCSLRALAGQAEGFGR---LAIGGLHGP---LYHVTTLADDGPGSLREGC---RMKEPLWIVFEVSGTIHLRS-------  124 (367)
Q Consensus        61 d~~~~ala~~a~Gfg~---~ttGG~gG~---v~~VT~l~d~gpGSLr~Ai---~~~~P~~IVf~vsGtI~l~~-------  124 (367)
                      |..++.|+ +|+|||+   +||||++|+   ||+|||++|     |++||   ..++||+|+  |+|+|++..       
T Consensus         2 ~~~~~~~~-~a~Gfa~~~~gTTGG~~a~~~~v~tVtt~ae-----L~~al~~~~~~~priI~--v~GtId~~~~~~g~~~   73 (399)
T 2o04_A            2 DLGHQTLG-SNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPL   73 (399)
T ss_dssp             CTTTCCCC-TTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBC
T ss_pred             CccccccC-CCcceeecCCCCcCCCCCccceEEEeCCHHH-----HHHHHHhccCCCCEEEE--EcCEEecccCCccccc
Confidence            45677777 7999999   899999996   899999999     99999   789999988  889999741       


Q ss_pred             ------------------------------------------------eeEeccCcceeeeccceEEeCCcEEEeeeccE
Q 017716          125 ------------------------------------------------HLSVSSYKTIDGRGQRVKLTGKGLRLKECEHV  156 (367)
Q Consensus       125 ------------------------------------------------~l~V~snkTI~G~G~gi~I~G~gi~i~~a~NV  156 (367)
                                                                      +|.|.|||||+|+|.+++|.|.+|+|+. +||
T Consensus        74 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~-~NV  152 (399)
T 2o04_A           74 GLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKS-DNV  152 (399)
T ss_dssp             CHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHHHHHHHHHHHHHHHHEEECCSSEEEEESSSCCEEESCEEEECS-EEE
T ss_pred             cccccccCCcchhhhhhcccccccccccCCCcccccccccccccccceEEEeCCCceEEeccCCeEEeeCEEEeeC-CCE
Confidence                                                            5788999999999999999999999997 999


Q ss_pred             EEeeeEEeCCC----------------CCCCCceEecCCCceEEEEceeeecC-----------------CCCceEeecC
Q 017716          157 IICNLEFEGGK----------------GPDVDAIQIKPKSKHIWIDRCSLRDY-----------------DDGLIDITRE  203 (367)
Q Consensus       157 IIRnL~i~~g~----------------~~d~DaI~i~~~s~nVWIDHcsfs~~-----------------~Dglidi~~~  203 (367)
                      |||||+|+.+.                ..++|+|+|+ +++|||||||+|+|+                 .||+||++++
T Consensus       153 IIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~  231 (399)
T 2o04_A          153 IIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNG  231 (399)
T ss_dssp             EEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETT
T ss_pred             EEeCeEEecCccccccccccccccccccCCCCeEEec-CCCcEEEEeeeeecCCCccccccccccceeeccccceeeecc
Confidence            99999999753                1367999997 899999999999996                 5999999999


Q ss_pred             CceEEEeCceecCCCceeEecCCCCCCCCc-ceeEEEecceecCCCCCCCccccCeeEEEcceEECcc-------cceee
Q 017716          204 STDITVSRCHFSSHDKTMLIGADPSHVADR-CIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWG-------IYAVC  275 (367)
Q Consensus       204 s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~-~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~-------~yai~  275 (367)
                      +++||||||+|++|+|+||||++|+...|+ .++||||||||+++.+|+||+|+|++|+|||||++|.       .|+++
T Consensus       232 s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~vT~h~N~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~~ya~g  311 (399)
T 2o04_A          232 ANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWG  311 (399)
T ss_dssp             CEEEEEESCEEEEEEECCEESCCTTCGGGTTCCCEEEESCEEEEEEECTTEESSCEEEEESCEEECCTTCSSSCCCCSEE
T ss_pred             CCcEEEEeeEEcCCCceeEeCCCCCCccccCceeEEEECcEecCCcccCCCcccceEEEEcceEECCCCCCccceeeEec
Confidence            999999999999999999999998877765 5899999999999999999999999999999999874       38999


Q ss_pred             ecCCceEEEEceeEecCCc--ceeeeeeccccCCcccCCCcEEEecCCeeeccccccccc--cCCCCcccCCCCCCcccc
Q 017716          276 ASVDSQIYSQCNIYEAGQK--KMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMA--EAGEHNMFHPSEHYYTWT  351 (367)
Q Consensus       276 ~~~~a~i~~e~N~F~~g~~--~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~--~~~~~~~~~P~~~Y~~~~  351 (367)
                      ++++++|++|+|||+++..  +.+++.+.         ....+...+|.|. |+..++..  ..++...|.|+++|+...
T Consensus       312 ~~~~~~i~~e~N~F~~~~~~~~~~~~~~s---------~~~~~~~~gn~~~-g~~~d~~~~~~~~~~~~~~p~~~y~~~~  381 (399)
T 2o04_A          312 IGKSSKIYAQNNVIDVPGLSAAKTISVFS---------GGTALYDSGTLLN-GTQINASAANGLSSSVGWTPSLHGSIDA  381 (399)
T ss_dssp             ECTTCEEEEESCEEECTTCCSGGGEEECT---------TCCBCEEESCEET-TEECCHHHHTTCBSCCSCCCCCCCCCCC
T ss_pred             cCCCcEEEEEceEEECCCCCccceeeecc---------CCceEEEeCceec-CcccccccccccCCCcccCCccccccCC
Confidence            9999999999999999732  23333321         1112345566654 43333211  124457899998888766


Q ss_pred             ------eeecccCCccc
Q 017716          352 ------LLQRCTGWQDV  362 (367)
Q Consensus       352 ------~~~~~ag~q~~  362 (367)
                            +|+.+||+..+
T Consensus       382 a~~V~~~V~~~AGag~l  398 (399)
T 2o04_A          382 SANVKSNVINQAGAGKL  398 (399)
T ss_dssp             HHHHHHHHHHHCSTTSC
T ss_pred             HHHHHHhHHhcCCCCcc
Confidence                  89999998653

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=100.00  E-value=5.3e-59  Score=462.06  Aligned_cols=216  Identities=22%  Similarity=0.287  Sum_probs=198.8

Q ss_pred             cccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec----------------------
Q 017716           66 ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR----------------------  123 (367)
Q Consensus        66 ala~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~----------------------  123 (367)
                      +++++|+|||++||||++|++|+||+++|     ||+||++++||||+|  +|+|++.                      
T Consensus         2 ~~~~~a~Gfa~~tTGG~~g~~~~Vtt~~d-----L~~al~~~~prvIvv--~gti~~~~~~G~~t~~~c~~~~~~~~~~~   74 (359)
T 1idk_A            2 GVSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVL--TKTFDFTDSEGTTTGTGCAPWGTASACQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CCCCCCccccCCCCCCCCceEEecCCHHH-----HHHHHcCCCceEEEE--CCEEEeccccCcccccccccccccccccc
Confidence            56789999999999999999999999999     999999999999995  7999974                      


Q ss_pred             ---------------------------ceeEeccCcceeeeccceEEeCCcEEEe-eeccEEEeeeEEeCCCC---CCCC
Q 017716          124 ---------------------------SHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGGKG---PDVD  172 (367)
Q Consensus       124 ---------------------------~~l~V~snkTI~G~G~gi~I~G~gi~i~-~a~NVIIRnL~i~~g~~---~d~D  172 (367)
                                                 .+|.|.|||||+|+|.+++|.|.+|+|+ +++|||||||+|+.+..   ++.|
T Consensus        75 ~~~~~~w~~~~~~~~~~~~~t~~~~~~~~l~v~snkTI~G~G~~~~i~G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~D  154 (359)
T 1idk_A           75 AIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCC
T ss_pred             ccccccccccccccCccccccccccccceEEeCCCceEEEecCCeEEecceEEEecCCCcEEEeCeEEEcccccccccCC
Confidence                                       3589999999999999999999999998 89999999999998643   5789


Q ss_pred             ceEecCCCceEEEEceeeecCCCCceEe-ecCCceEEEeCceecCC------------CceeEecCCCCCCCCcceeEEE
Q 017716          173 AIQIKPKSKHIWIDRCSLRDYDDGLIDI-TRESTDITVSRCHFSSH------------DKTMLIGADPSHVADRCIRVTI  239 (367)
Q Consensus       173 aI~i~~~s~nVWIDHcsfs~~~Dglidi-~~~s~~VTIS~n~f~~H------------~k~~LiG~sd~~~~d~~~~VT~  239 (367)
                      +|.|+ +++|||||||+|+|..|++++. ++++++||||||+|.+|            +|+||+|++|        +|||
T Consensus       155 aI~i~-~s~nVwIDHcs~s~~~d~~~~~g~~~s~~VTISnn~f~~~~~~s~~~~G~h~~~~~L~G~sd--------~vT~  225 (359)
T 1idk_A          155 AITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDAD--------LVTM  225 (359)
T ss_dssp             SEEEC-SCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSC--------EEEE
T ss_pred             ceeec-CCCcEEEEeeEeecCCCCcEEecccCcceEEEECcEecCCcccccccCccccceEEEEecCC--------CeEE
Confidence            99998 7999999999999999999987 67899999999999743            3899999875        8999


Q ss_pred             ecceecCCCCCCCccccC-eeEEEcceEECcccceeeecCCceEEEEceeEecCCccee
Q 017716          240 HHCFFDGTRQRHPRVRYA-KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMA  297 (367)
Q Consensus       240 hhN~f~~~~~R~Pr~r~G-~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~~v  297 (367)
                      |||||.++.+|+||+|+| ++|++||||++|..|++++++++++++|+|||++++.+..
T Consensus       226 hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~  284 (359)
T 1idk_A          226 KGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLE  284 (359)
T ss_dssp             ESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEE
T ss_pred             EceEeecCcccCccccCCceEEEECCEEecccceEEeccCCcEEEEEccEEECCCCcee
Confidence            999999999999999998 5999999999999999999999999999999999876643

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=100.00  E-value=1.7e-57  Score=451.32  Aligned_cols=216  Identities=25%  Similarity=0.318  Sum_probs=194.7

Q ss_pred             cccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec----------------------
Q 017716           66 ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR----------------------  123 (367)
Q Consensus        66 ala~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~----------------------  123 (367)
                      ++.++|||||++||||++|++|+|||++|     ||+||++++||+|++  +|+|++.                      
T Consensus         2 ~~~~~a~Gfa~~tTGG~gg~~v~Vtt~~~-----L~~al~~~~prvIvv--~gtid~~g~~g~~~~~~c~~~~~~~~~~~   74 (359)
T 1qcx_A            2 GVVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQV   74 (359)
T ss_dssp             CCCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCE
T ss_pred             CcCCCcceeecCCcCCCCcceEEeCCHHH-----HHHHHcCCCCeEEEE--CcEEeeccccccccccccccccccccccc
Confidence            35678999999999999999999999999     999999999999993  5665531                      


Q ss_pred             ---------------------------ceeEeccCcceeeeccceEEeCCcEEEe-eeccEEEeeeEEeCCCC---CCCC
Q 017716          124 ---------------------------SHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGGKG---PDVD  172 (367)
Q Consensus       124 ---------------------------~~l~V~snkTI~G~G~gi~I~G~gi~i~-~a~NVIIRnL~i~~g~~---~d~D  172 (367)
                                                 ..|.|.|||||+|+|.+++|.|.+|+|+ +++|||||||+||.+..   +++|
T Consensus        75 ~i~~~~~~~~~~~~~p~~ti~~~~a~~~~i~v~snkTI~G~g~~~~I~G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~D  154 (359)
T 1qcx_A           75 AINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGD  154 (359)
T ss_dssp             EECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCC
T ss_pred             eecccccccccccCCccceeeecccccceEEeCCCceEEecCCceEEecceEEEecCCCCEEEeCcEEEecCCcccccCc
Confidence                                       2588899999999999999999999998 89999999999998754   5689


Q ss_pred             ceEecCCCceEEEEceeeecCCCCce-EeecCCceEEEeCceecC-----------C-CceeEecCCCCCCCCcceeEEE
Q 017716          173 AIQIKPKSKHIWIDRCSLRDYDDGLI-DITRESTDITVSRCHFSS-----------H-DKTMLIGADPSHVADRCIRVTI  239 (367)
Q Consensus       173 aI~i~~~s~nVWIDHcsfs~~~Dgli-di~~~s~~VTIS~n~f~~-----------H-~k~~LiG~sd~~~~d~~~~VT~  239 (367)
                      +|.|+ ++++||||||+|+|..|+++ +.++++++||||||+|++           | +|+||+|++|        +|||
T Consensus       155 aI~i~-~s~nvwIDHcs~s~~~d~~~~~~~~~s~~vTISnn~f~~~~~~s~~~~G~H~~~~~l~G~sd--------~vT~  225 (359)
T 1qcx_A          155 AITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSND--------MVTL  225 (359)
T ss_dssp             SEEEE-SCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSE--------EEEE
T ss_pred             eeEec-CCceEEEEeeEeeccCcCceeecccccccEEEECcEecCCccccccCcccccceeEEecCCC--------Ceeh
Confidence            99998 79999999999999999998 456789999999999983           4 5789999875        7999


Q ss_pred             ecceecCCCCCCCccccC-eeEEEcceEECcccceeeecCCceEEEEceeEecCCccee
Q 017716          240 HHCFFDGTRQRHPRVRYA-KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMA  297 (367)
Q Consensus       240 hhN~f~~~~~R~Pr~r~G-~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~~v  297 (367)
                      |||||.++.+|+||+|++ ++|++||||++|..|++++++++++++|+|||++++.+..
T Consensus       226 ~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~a~~~~~~~~i~~e~N~F~~~~~~~~  284 (359)
T 1qcx_A          226 KGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVE  284 (359)
T ss_dssp             ESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEEC
T ss_pred             cccEeccCcccCceecCCceEEEEccEEECccCeEEecCCCceEEEEeeEEECCCcccC
Confidence            999999999999999986 6999999999999999999999999999999999876643

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=100.00  E-value=1.8e-56  Score=443.00  Aligned_cols=234  Identities=21%  Similarity=0.264  Sum_probs=197.5

Q ss_pred             CcccccC---CCCCCCCCceEEecCCCCCCChhHHHhhhc-----------CCCeEEEEEeceEEEec------------
Q 017716           70 QAEGFGR---LAIGGLHGPLYHVTTLADDGPGSLREGCRM-----------KEPLWIVFEVSGTIHLR------------  123 (367)
Q Consensus        70 ~a~Gfg~---~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~-----------~~P~~IVf~vsGtI~l~------------  123 (367)
                      ..+|||.   +|+||  +.+++||++++     |++||++           +.++.+||.|+|+|++.            
T Consensus         3 ~~~G~at~~Ggt~gg--~~~~tvtt~~~-----L~~al~~~~~~~~g~~~~~~~~p~vi~v~GtId~~~~~~~~~~~~~~   75 (353)
T 1air_A            3 DTGGYAATAGGNVTG--AVSKTATSMQD-----IVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQW   75 (353)
T ss_dssp             BCSSSCBCCTTCSTT--CEEEEESSHHH-----HHHHHHHTTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTSGGGST
T ss_pred             CCCcceecCCCCCCC--cceEEeCCHHH-----HHHHHHhhccccccccccCCCceEEEEEccEEecccccccccccccc
Confidence            3678876   23333  46889999997     9999965           34555677899999882            


Q ss_pred             ----ceeEe---ccCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC--CCCCceEecCCCceEEEEceeeecC-
Q 017716          124 ----SHLSV---SSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRDY-  193 (367)
Q Consensus       124 ----~~l~V---~snkTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~~--~d~DaI~i~~~s~nVWIDHcsfs~~-  193 (367)
                          ..|.|   .+||||+|+..  .+.|.+|+|++++|||||||+|+..+.  .++|+|+|+ +++|||||||+|+|. 
T Consensus        76 ~~~~~~~~i~~~~sn~TI~G~~~--~~~g~gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~-~s~nVWIDH~s~s~~~  152 (353)
T 1air_A           76 SKDPRGVEIKEFTKGITIIGANG--SSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAAN  152 (353)
T ss_dssp             TSCCCEEEEESBCSCEEEEECTT--CCBSSEEEEESCCSEEEESCEEESCSCGGGTCCSEEEE-SCCSEEEESCEEECCS
T ss_pred             ccCCCceEEEecCCCEEEEeccC--CCCCceEEEeccCcEEEeccEEEeCCCCCCCCCeEEee-CCCcEEEEeeEEecCC
Confidence                45666   59999999843  366889999999999999999997653  578999998 899999999999985 


Q ss_pred             ------------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEE
Q 017716          194 ------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHL  261 (367)
Q Consensus       194 ------------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv  261 (367)
                                  .||++|+++++++||||||+|++|+|+||+|+++++..   ++||||||||+++.+|+||+|+|++|+
T Consensus       153 ~~~~g~~~~~~~~DGl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~g---~~vT~hhN~f~~~~~R~Pr~r~G~~Hv  229 (353)
T 1air_A          153 HECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTG---RNITYHHNYYNDVNARLPLQRGGLVHA  229 (353)
T ss_dssp             CCCTTCGGGCCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSTTCCC---CEEEEESCEEEEEEECSCEEESSEEEE
T ss_pred             cccccccccccccccceeeecccCcEEEEeeEEcCCCceeEECCCcCCCC---ceEEEEceEEcCCcCCCCCCcCceEEE
Confidence                        39999999999999999999999999999999876432   699999999999999999999999999


Q ss_pred             EcceEECcccceeeecCCceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeee
Q 017716          262 YNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSS  324 (367)
Q Consensus       262 ~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~  324 (367)
                      |||||++|..|++++++++++++|+|||+++..+...++        +....|+|+.++|.|.
T Consensus       230 ~NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~~~p~~~~~--------~~~~~g~~~~~~n~~~  284 (353)
T 1air_A          230 YNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY--------DGKNFGTWVLKGNNIT  284 (353)
T ss_dssp             ESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEECS--------SSSSCCEEEEESCSCC
T ss_pred             EccEEECCCCceeccCCCcEEEEEceEEECCCCceEecC--------CCCCCceeEecccccc
Confidence            999999999999999999999999999999866643221        2335688988888765

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=98.85  E-value=1.3e-07  Score=92.44  Aligned_cols=137  Identities=11%  Similarity=0.076  Sum_probs=91.2

Q ss_pred             eeccEEEeeeEEeCCCC---------------------CCCCceEecCCCceEEEEcee-eecCCCCceEeecCCceEEE
Q 017716          152 ECEHVIICNLEFEGGKG---------------------PDVDAIQIKPKSKHIWIDRCS-LRDYDDGLIDITRESTDITV  209 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~~---------------------~d~DaI~i~~~s~nVWIDHcs-fs~~~Dglidi~~~s~~VTI  209 (367)
                      .++|+.|++++|+....                     ...|||.+. .++++.|.+|. +....|| |++..++++++|
T Consensus       132 ~~~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~-~s~~~~i~~N~~~~~~~~G-I~~~~~s~~v~I  209 (377)
T 2pyg_A          132 ADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVAD-YLVDSVFENNVAYANDRHG-FNVVTSTHDFVM  209 (377)
T ss_dssp             CEEEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEE-SEEEEEEESCEEESCSSCS-EEEETTCEEEEE
T ss_pred             cccceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEe-ccCCcEEECcEEEccccCc-EEEEeccCCeEE
Confidence            46788888888875421                     234666665 56666777774 3445666 777666899999


Q ss_pred             eCceecCCCceeEe---cCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECcccceeeecCCceEEEE
Q 017716          210 SRCHFSSHDKTMLI---GADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQ  285 (367)
Q Consensus       210 S~n~f~~H~k~~Li---G~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~yai~~~~~a~i~~e  285 (367)
                      ++|.+.+...+..+   |+.+.   ...-++++.+|.+.++..+-..+.. ..+.|.||.+++....++.......+.++
T Consensus       210 ~nN~i~~~~~g~~~~~~g~~~~---~~s~nv~i~~N~~~~n~~~Gi~~~~~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~  286 (377)
T 2pyg_A          210 TNNVAYGNGSSGLVVQRGLEDL---ALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQIL  286 (377)
T ss_dssp             ESCEEESCSSCSEEEECCSSCC---CCCEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESCSSCSEEEEEEEEEEEE
T ss_pred             ECCEEECccCceEEEeccccCC---CCCccEEEECCEEEcCccCceEeccccCeEEECCEEECCCCceEEEecCCCcEEE
Confidence            99999876554443   22211   1123789999987766555444432 45789999998875567766555678889


Q ss_pred             ceeEecCC
Q 017716          286 CNIYEAGQ  293 (367)
Q Consensus       286 ~N~F~~g~  293 (367)
                      +|.|....
T Consensus       287 ~N~i~~n~  294 (377)
T 2pyg_A          287 DNQIHDNA  294 (377)
T ss_dssp             SCEEESCC
T ss_pred             CcEEECCc
Confidence            99998653

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=98.76  E-value=1.9e-07  Score=96.26  Aligned_cols=199  Identities=20%  Similarity=0.225  Sum_probs=122.1

Q ss_pred             eEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEe------ccCcceeeec-cceEEeCCc-EEEeeeccEE
Q 017716           86 LYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSV------SSYKTIDGRG-QRVKLTGKG-LRLKECEHVI  157 (367)
Q Consensus        86 v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V------~snkTI~G~G-~gi~I~G~g-i~i~~a~NVI  157 (367)
                      .++|.+.     .+|++|+++..|...|+-..|+++- ..|.+      .+.+||.|.+ .+++|.|.. |.|. +++|.
T Consensus        25 ~i~V~~~-----~~Lq~Ai~~A~pGDtI~L~~GtY~~-~~i~i~~sGt~~~pItl~~~~~~~~vi~G~~~l~i~-g~~v~   97 (506)
T 1dbg_A           25 GQVVASN-----ETLYQVVKEVKPGGLVQIADGTYKD-VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLI   97 (506)
T ss_dssp             -CEECSH-----HHHHHHHHHCCTTCEEEECSEEEET-CEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEE
T ss_pred             EEEeCCH-----HHHHHHHHhCCCCCEEEECCCEEec-ceEEEecCCcCCCCEEEECCCCCccEEeCCceEEEE-cCCEE
Confidence            3567643     3599999988887666667899862 25666      5678999973 467888764 7775 79999


Q ss_pred             EeeeEEeCCCC-------CCCCceEecCCCceEEEEceeeecCCCCc-eEee-------cCCceEEEeCceecCC-Ccee
Q 017716          158 ICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGL-IDIT-------RESTDITVSRCHFSSH-DKTM  221 (367)
Q Consensus       158 IRnL~i~~g~~-------~d~DaI~i~~~s~nVWIDHcsfs~~~Dgl-idi~-------~~s~~VTIS~n~f~~H-~k~~  221 (367)
                      |++|+|+++..       .+..+|.+.  ++++.|.+|.|.+..++. +.+.       ..+.+.+|.+|.|.+. ..++
T Consensus        98 i~GL~i~~~~~~~~~~~~~~~~~iav~--G~~~~I~nn~I~~~~~gd~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~  175 (506)
T 1dbg_A           98 LEGIWFKDGNRAIQAWKSHGPGLVAIY--GSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQ  175 (506)
T ss_dssp             EESCEEEEECCCTTTCCTTSCCSEEEC--SSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSC
T ss_pred             EECeEEECCCcceeeeecccccceEEe--cCCeEEEeeEEEcCCCCceeeEeecccceeeeccccEEECcEEECCcCcce
Confidence            99999997642       112466675  478889999999887661 2222       1355668999999862 2344


Q ss_pred             Ee-c---CCCCCCC---CcceeEEEecceecCCCC---CCCccccC-------eeEEEcceEECc-ccceeeecCCceEE
Q 017716          222 LI-G---ADPSHVA---DRCIRVTIHHCFFDGTRQ---RHPRVRYA-------KVHLYNNYTRNW-GIYAVCASVDSQIY  283 (367)
Q Consensus       222 Li-G---~sd~~~~---d~~~~VT~hhN~f~~~~~---R~Pr~r~G-------~~Hv~NN~~~n~-~~yai~~~~~a~i~  283 (367)
                      ++ |   -.-....   +......++||+|.+...   |.=-+|+|       ...|.||++++. +.+++-........
T Consensus       176 ~i~gnngI~l~~~~~~~~~~~~~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~~~gg~aim~skS~~n~  255 (506)
T 1dbg_A          176 VINLNNTARAIKDGSVGGPGMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENV  255 (506)
T ss_dssp             SEEECSSCCCSCCCSCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBSCE
T ss_pred             EEecCceeEeccCcccccccCCeEEeCcEEcccccCCCccccEEEEEEecccCCcEEECCEEEeccCcEEEEEEecCCEE
Confidence            43 2   1100000   111256788898875421   11123444       457788887753 23454433333344


Q ss_pred             EEceeEecCC
Q 017716          284 SQCNIYEAGQ  293 (367)
Q Consensus       284 ~e~N~F~~g~  293 (367)
                      +.+|.|....
T Consensus       256 i~~N~~~~~~  265 (506)
T 1dbg_A          256 YYGNTYLNCQ  265 (506)
T ss_dssp             EESCEEESCS
T ss_pred             EECCEEEccc
Confidence            5666665443

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=98.74  E-value=3.4e-08  Score=99.02  Aligned_cols=183  Identities=14%  Similarity=0.194  Sum_probs=123.4

Q ss_pred             CCCeEEEEEeceEEEecceeEeccC-cceeeeccceE---Ee------C------Cc--EEEeee---------------
Q 017716          107 KEPLWIVFEVSGTIHLRSHLSVSSY-KTIDGRGQRVK---LT------G------KG--LRLKEC---------------  153 (367)
Q Consensus       107 ~~P~~IVf~vsGtI~l~~~l~V~sn-kTI~G~G~gi~---I~------G------~g--i~i~~a---------------  153 (367)
                      ..|.-++.-..|+++|+++|.|... +||.|.+.+.+   |.      |      +|  |++..+               
T Consensus        54 A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~~  133 (410)
T 2inu_A           54 ARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDP  133 (410)
T ss_dssp             SCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSSS
T ss_pred             CCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccCc
Confidence            4566666668899999999999865 99999876655   66      3      22  555544               


Q ss_pred             --ccEEEeeeEEeCC-----C---CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCc-eeE
Q 017716          154 --EHVIICNLEFEGG-----K---GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-TML  222 (367)
Q Consensus       154 --~NVIIRnL~i~~g-----~---~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k-~~L  222 (367)
                        ++|.|++|+|++.     .   ....-||.+...++++.|.+|.|.+...| |++ +++++++|.+|.|.+..- .-|
T Consensus       134 r~s~V~~~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~~fG-I~l-~~a~~~~I~~N~I~e~GNgI~L  211 (410)
T 2inu_A          134 RLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHA-LIV-RGADALRVNDNMIAECGNCVEL  211 (410)
T ss_dssp             CEECCEEESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESCSEE-EEE-TTEESCEEESCEEESSSEEEEE
T ss_pred             ccCCcEECCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecccEE-EEE-ccCCCcEEECCEEEecCCceee
Confidence              7888888888875     2   13356899975588899999999999999 778 689999999999985333 346


Q ss_pred             ecCC-CC-----C--CCCcc--eeEEE-ecceecCCCCCCCccccC-------eeEEEcceEECcccceeeecC--CceE
Q 017716          223 IGAD-PS-----H--VADRC--IRVTI-HHCFFDGTRQRHPRVRYA-------KVHLYNNYTRNWGIYAVCASV--DSQI  282 (367)
Q Consensus       223 iG~s-d~-----~--~~d~~--~~VT~-hhN~f~~~~~R~Pr~r~G-------~~Hv~NN~~~n~~~yai~~~~--~a~i  282 (367)
                      ||.+ ..     .  ...++  +.+.. +++++.++.. .|+.|.|       ...+.+|.+.+.. |++-.-.  ....
T Consensus       212 ~G~~~~~~I~~N~i~~~~dG~gIyl~ns~~~~I~~N~i-~~~~R~gIh~m~s~~~~i~~N~f~~~~-~Gi~~M~s~~~~n  289 (410)
T 2inu_A          212 TGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNL-FPRGRSLIEFTGCNRCSVTSNRLQGFY-PGMLRLLNGCKEN  289 (410)
T ss_dssp             CSCEESCEEESCEEECCTTSEEEEEESEESCEEESCEE-CSCSSEEEEEESCBSCEEESCEEEESS-SCSEEEESSCBSC
T ss_pred             ccccccceEecceeeecCCCCEEEEEeCCCCEEECCCc-ccCcceEEEEEccCCCEEECCEEecce-eEEEEEEcCCCCC
Confidence            6722 11     1  11222  55555 4567766533 2344433       3467888777653 4443333  3467


Q ss_pred             EEEceeEecCC
Q 017716          283 YSQCNIYEAGQ  293 (367)
Q Consensus       283 ~~e~N~F~~g~  293 (367)
                      ++++|.|....
T Consensus       290 ~v~~N~f~~~~  300 (410)
T 2inu_A          290 LITANHIRRTN  300 (410)
T ss_dssp             EEESCEEEEEC
T ss_pred             EEECCEEeccC
Confidence            77888888643

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=98.73  E-value=2.1e-07  Score=97.64  Aligned_cols=117  Identities=16%  Similarity=0.234  Sum_probs=81.8

Q ss_pred             EEEeeeccEEEeeeEEeCCCC--------CCCCceEecCC------CceEEEEceeeecCCCCceEeecCCceEEEeCce
Q 017716          148 LRLKECEHVIICNLEFEGGKG--------PDVDAIQIKPK------SKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH  213 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~--------~d~DaI~i~~~------s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~  213 (367)
                      |.+..++||.|++|+++....        ...|+|.++ +      ++||||++|.+....|..|.+ +.+.+|+|++|.
T Consensus       137 I~f~~c~NV~I~gVti~NSp~~gI~I~~~~~NDGid~D-Gi~fd~~S~NV~I~Nc~I~~tGDDcIaI-ksseNI~I~Nc~  214 (609)
T 3gq8_A          137 LSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGD-GTTAPNPSENIWIENCEATGFGDDGITT-HHSQYINILNCY  214 (609)
T ss_dssp             EEEESCEEEEEEEEEEESCSSCSEEEECSSSSCCCCCT-TCCCSSCCEEEEEESCEEESCSSCSEEE-CSCEEEEEESCE
T ss_pred             EEEEeeceEEEEeeEEEeCCCCCeEEeCCCCCccccCC-CccccccceeEEEEeeEEEecCCCEEEe-cCCeeEEEEeEE
Confidence            677789999999999987542        112455554 4      899999999998766666888 569999999999


Q ss_pred             ecCC-----CceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc----C---eeEEEcceE-ECccccee
Q 017716          214 FSSH-----DKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY----A---KVHLYNNYT-RNWGIYAV  274 (367)
Q Consensus       214 f~~H-----~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~----G---~~Hv~NN~~-~n~~~yai  274 (367)
                      +.+.     .-++-||..       ..+|++.+|.|.++. |.=|++.    +   .+++.||+. .++..|.+
T Consensus       215 ~~gp~G~S~~~GIsIGsg-------s~NVtV~Nc~i~nt~-~GIrIKt~~~~~~v~NV~I~n~vs~~nvrsyn~  280 (609)
T 3gq8_A          215 SHDPRLTANCNGFEIDDG-------SRHVVLSNNRSKGCY-GGIEIKAHGDAPAAYNISINGHMSVEDVRSYNF  280 (609)
T ss_dssp             EECCSSCSSCCSEEECTT-------CEEEEEESEEEESSS-EEEEEEECTTSCCCEEEEEEEEEEESCSEEEEE
T ss_pred             EECCCCCCCcccEEccCC-------cccEEEEeeEEECCC-CEEEEEecCCCCccccEEEECCEeecCceEecc
Confidence            9543     235555532       148999999998764 3444432    1   478888865 45555554

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=98.70  E-value=2.4e-06  Score=85.72  Aligned_cols=204  Identities=9%  Similarity=0.039  Sum_probs=130.4

Q ss_pred             CCceEEec-CCCCCCCh-------hHHHhhhcCCCeEEEEEeceEEE--ec----ceeEec------cCcceeeec-cce
Q 017716           83 HGPLYHVT-TLADDGPG-------SLREGCRMKEPLWIVFEVSGTIH--LR----SHLSVS------SYKTIDGRG-QRV  141 (367)
Q Consensus        83 gG~v~~VT-~l~d~gpG-------SLr~Ai~~~~P~~IVf~vsGtI~--l~----~~l~V~------snkTI~G~G-~gi  141 (367)
                      .+++|+|. +-+|+++|       +|++|++...|...|+-..|++.  +.    ..|.+.      ..+||.|.+ ...
T Consensus        13 ~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~pGdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~g~~~   92 (400)
T 1ru4_A           13 TKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRA   92 (400)
T ss_dssp             CSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGGCCE
T ss_pred             CccEEEEcCCCCCCCCCccccCCccHHHHHhhCCCCCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEecCCCC
Confidence            34667775 34555666       99999998888666666789998  43    346653      348999974 566


Q ss_pred             EEe-----C------CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEe
Q 017716          142 KLT-----G------KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVS  210 (367)
Q Consensus       142 ~I~-----G------~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS  210 (367)
                      .|.     +      .+|.| .+++|.|++|+|+...   ..||.+. + .++.|++|.|.+..+.-|.+...+.+.+|.
T Consensus        93 vI~~~~~~g~~~~~~~~i~i-~~~~~~i~gl~I~n~g---~~GI~v~-g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~  166 (400)
T 1ru4_A           93 VFDFSFPDSQWVQASYGFYV-TGDYWYFKGVEVTRAG---YQGAYVI-G-SHNTFENTAFHHNRNTGLEINNGGSYNTVI  166 (400)
T ss_dssp             EEECCCCTTCCCTTCCSEEE-CSSCEEEESEEEESCS---SCSEEEC-S-SSCEEESCEEESCSSCSEEECTTCCSCEEE
T ss_pred             EEeCCccCCccccceeEEEE-ECCeEEEEeEEEEeCC---CCcEEEe-C-CCcEEEeEEEECCCceeEEEEcccCCeEEE
Confidence            775     2      45788 5899999999998753   2489997 4 667899999999988557786656688899


Q ss_pred             CceecCCCc---------ee-EecCC--CCC---------CCC------cceeEEEecceecCCCCC-CC---------c
Q 017716          211 RCHFSSHDK---------TM-LIGAD--PSH---------VAD------RCIRVTIHHCFFDGTRQR-HP---------R  253 (367)
Q Consensus       211 ~n~f~~H~k---------~~-LiG~s--d~~---------~~d------~~~~VT~hhN~f~~~~~R-~P---------r  253 (367)
                      +|.+.+...         +. ++-..  ...         ..|      ..-.|+|.+|+..++... -.         -
T Consensus       167 nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl~~~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnG  246 (400)
T 1ru4_A          167 NSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNG  246 (400)
T ss_dssp             SCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTCCCCCCS
T ss_pred             ceEEEcccCccccCcccceEEEEecccCCeEEECCEEeecCCCcEEEEecCCCEEEEeEEEECCccccccccccccCCCC
Confidence            998864320         11 11110  000         001      112467877765433321 10         0


Q ss_pred             cccC------eeEEEcceEECcccceeeecCCc-eEEEEceeEecC
Q 017716          254 VRYA------KVHLYNNYTRNWGIYAVCASVDS-QIYSQCNIYEAG  292 (367)
Q Consensus       254 ~r~G------~~Hv~NN~~~n~~~yai~~~~~a-~i~~e~N~F~~g  292 (367)
                      +..|      ...|.||+.++...+++.....+ .+.+++|.+..-
T Consensus       247 f~lgg~~~~~~~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~N  292 (400)
T 1ru4_A          247 FKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKN  292 (400)
T ss_dssp             EECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEESS
T ss_pred             EEEeccCCcCCEEEEeeEEECCcCcCEeecCCCCCEEEECeEEECC
Confidence            1111      34688888887777788776554 377788865543

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.34  E-value=1.9e-05  Score=77.12  Aligned_cols=149  Identities=15%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             cCcceeeeccceEEeCC------------------cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee
Q 017716          130 SYKTIDGRGQRVKLTGK------------------GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR  191 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~------------------gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs  191 (367)
                      +++||.|.|.+ +|.|.                  .|.+..++||.|++|+|+...   ..+|.+. .+++|.|++|++.
T Consensus        68 ~nv~I~G~~gG-~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~giti~nsp---~~~i~i~-~~~nv~i~~~~I~  142 (339)
T 2iq7_A           68 TNININGASGH-SIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTP---VQAFSIN-SATTLGVYDVIID  142 (339)
T ss_dssp             ESCEEEECTTC-EEECCGGGTCCSCGGGSSSCCCCCEEEEEEEEEEEECCEEECCS---SCCEEEE-SCEEEEEESCEEE
T ss_pred             ccEEEEcCCCC-EEECCcccccccccccCCCCCCeEEEEeeeCcEEEEEEEEEeCC---cceEEEe-ccCCEEEEEEEEE
Confidence            67777776322 55543                  267778889999999998754   3567776 7888888888886


Q ss_pred             c---------CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc------
Q 017716          192 D---------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY------  256 (367)
Q Consensus       192 ~---------~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~------  256 (367)
                      .         ..|| ||+ ..+++|+|++|.|...+-+.-++++        -+|++.+|.+.....    +..      
T Consensus       143 ~~~~d~~~~~ntDG-id~-~~s~nV~I~n~~i~~gDDciaiksg--------~nI~i~n~~~~~ghG----isiGSlg~~  208 (339)
T 2iq7_A          143 NSAGDSAGGHNTDA-FDV-GSSTGVYISGANVKNQDDCLAINSG--------TNITFTGGTCSGGHG----LSIGSVGGR  208 (339)
T ss_dssp             CGGGGGTTCCSCCS-EEE-ESCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSCC----EEEEEESSS
T ss_pred             CCccccccCCCCCc-EEE-cCcceEEEEecEEecCCCEEEEcCC--------ccEEEEeEEEECCce----EEECcCCcc
Confidence            4         2566 677 3578888888888765555555542        267777777655321    221      


Q ss_pred             --C---eeEEEcceEECcccceeee--cCC-----ceEEEEceeEecCCc-ceee
Q 017716          257 --A---KVHLYNNYTRNWGIYAVCA--SVD-----SQIYSQCNIYEAGQK-KMAF  298 (367)
Q Consensus       257 --G---~~Hv~NN~~~n~~~yai~~--~~~-----a~i~~e~N~F~~g~~-~~v~  298 (367)
                        +   .+.|.|+.+.+.. .++..  ..+     ..|.+|+..++.... +...
T Consensus       209 ~~~~v~nV~v~n~~~~~~~-~girIkt~~g~~G~v~nI~~~ni~~~~v~~~~i~i  262 (339)
T 2iq7_A          209 SDNTVKTVTISNSKIVNSD-NGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVI  262 (339)
T ss_dssp             SCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEE
T ss_pred             cCCCEEEEEEEeeEEECCC-cEEEEEEeCCCCeEEEEEEEEeEEccCcccccEEE
Confidence              1   3577777777642 34322  112     356667777776554 5444

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.30  E-value=2.7e-05  Score=76.12  Aligned_cols=133  Identities=14%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec---------CCCCceEeecCCceEEEeCceecCCC
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHD  218 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~---------~~Dglidi~~~s~~VTIS~n~f~~H~  218 (367)
                      |.+.+++||.|++|+|+...   ..+|.+. .+++|.|++|++..         ..|| ||+ ..+++|+|++|.|...+
T Consensus       107 i~~~~~~nv~i~~i~i~nsp---~~~i~i~-~~~nv~i~~~~I~~~~~d~~~~~ntDG-id~-~~s~nV~I~n~~i~~gD  180 (339)
T 1ia5_A          107 FAAHSLTNSVISGLKIVNSP---VQVFSVA-GSDYLTLKDITIDNSDGDDNGGHNTDA-FDI-GTSTYVTISGATVYNQD  180 (339)
T ss_dssp             EEEEEEEEEEEESCEEECCS---SCCEEEE-SCEEEEEESCEEECGGGTTTTCCSCCS-EEE-ESCEEEEEESCEEECSS
T ss_pred             EEEeecCcEEEEEEEEEcCC---cceEEEe-cccCeEEeeEEEECCccccccCCCCCc-EEe-cCCceEEEEeeEEEcCC
Confidence            77778899999999998754   3678886 78888888888864         2677 777 46788888888887666


Q ss_pred             ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc--------C---eeEEEcceEECcccceeee--cCC-----c
Q 017716          219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY--------A---KVHLYNNYTRNWGIYAVCA--SVD-----S  280 (367)
Q Consensus       219 k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~--------G---~~Hv~NN~~~n~~~yai~~--~~~-----a  280 (367)
                      -+.-++++        -+|++.++.+.+...    +..        +   .+.+.|+.+.+.. .++..  ..+     .
T Consensus       181 DcIaiksg--------~nI~i~n~~~~~ghG----isiGS~g~~~~~~v~nV~v~n~~~~~t~-~girIKt~~g~~G~v~  247 (339)
T 1ia5_A          181 DCVAVNSG--------ENIYFSGGYCSGGHG----LSIGSVGGRSDNTVKNVTFVDSTIINSD-NGVRIKTNIDTTGSVS  247 (339)
T ss_dssp             CSEEESSE--------EEEEEESCEEESSSC----EEEEEECSSSCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEE
T ss_pred             CeEEEeCC--------eEEEEEeEEEECCce----EEECcCCcccCCCEEEEEEEeeEEECCC-cEEEEEEeCCCCcEEE
Confidence            56555543        267777777654321    222        1   3567777777642 34322  112     3


Q ss_pred             eEEEEceeEecCCc-ceeee
Q 017716          281 QIYSQCNIYEAGQK-KMAFK  299 (367)
Q Consensus       281 ~i~~e~N~F~~g~~-~~v~~  299 (367)
                      .|.+++..++.... +...+
T Consensus       248 nI~~~ni~~~~v~~~~i~i~  267 (339)
T 1ia5_A          248 DVTYKDITLTSIAKYGIVVQ  267 (339)
T ss_dssp             EEEEEEEEEEEESSEEEEEE
T ss_pred             eeEEEEEEEECcccccEEEE
Confidence            56666666666554 54443

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.28  E-value=4.6e-06  Score=82.48  Aligned_cols=101  Identities=20%  Similarity=0.304  Sum_probs=78.0

Q ss_pred             cEEEeeeccEEEeeeEEeCCC-CCCCCceEecCCCceEEEEceeeecCCCCceEeec-----CCceEEEeCceecCCCce
Q 017716          147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-----ESTDITVSRCHFSSHDKT  220 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~-~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~-----~s~~VTIS~n~f~~H~k~  220 (367)
                      .+.+..++||+|+|++|+... ....|||.+. .+++|+|++|.|..+.|. |.++.     .+.+|+|++|.+.. ..+
T Consensus       176 ~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks~~~~~~s~nI~I~n~~~~~-ghG  252 (376)
T 1bhe_A          176 HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAYKGRAETRNISILHNDFGT-GHG  252 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSCS-EEEEECTTSCCEEEEEEEEEEECS-SSC
T ss_pred             EEEEeCCCcEEEEeEEEECCCCCCCCceEeec-CCceEEEEeCEEecCCCe-EEEcccCCCCCceEEEEEeeEEEc-ccc
Confidence            477778999999999999753 3458999997 899999999999877666 88873     68999999999984 345


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCCCCCCCccc
Q 017716          221 MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR  255 (367)
Q Consensus       221 ~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r  255 (367)
                      +-||+..+    .--+|++.+|.|.++. +.-|++
T Consensus       253 isiGSe~~----~v~nV~v~n~~~~~t~-~GirIK  282 (376)
T 1bhe_A          253 MSIGSETM----GVYNVTVDDLKMNGTT-NGLRIK  282 (376)
T ss_dssp             EEEEEEES----SEEEEEEEEEEEESCS-EEEEEE
T ss_pred             EEeccCCc----cEeeEEEEeeEEeCCC-cEEEEE
Confidence            67787432    2248999999998763 333443

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=98.26  E-value=9.5e-06  Score=85.27  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecC----------CceEEEeCceecC
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE----------STDITVSRCHFSS  216 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~----------s~~VTIS~n~f~~  216 (367)
                      +|.+..++||+|+||+|........|||.+. .+++|+|++|.|..+.|. |.++.+          +.+|+|++|.+..
T Consensus       356 ~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDD~-Iaiksg~~~~g~~~~~s~nI~I~n~~~~~  433 (608)
T 2uvf_A          356 GIMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDDC-INFAAGTGEKAQEQEPMKGAWLFNNYFRM  433 (608)
T ss_dssp             SEEEESCEEEEEESCEEECTTCTTCCSEEEE-SCEEEEEESCEEECSSCS-EEEECCCSGGGGGSCCEEEEEEESCEECS
T ss_pred             EEEEecCCCEEEeeEEEcCCCCCCCCeEEec-CCceEEEEeeEEecCCce-EEecCCcCccccccccccCEEEEeEEEeC
Confidence            4778889999999999987544568999998 899999999999876554 777644          6899999999986


Q ss_pred             CCceeEecCCCCCCCCcceeEEEecceecCC
Q 017716          217 HDKTMLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       217 H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      -.-...||+..   ...--+|++.+|.|.+.
T Consensus       434 ghg~~~iGS~~---~~~v~nI~v~n~~~~~t  461 (608)
T 2uvf_A          434 GHGAIVTGSHT---GAWIEDILAENNVMYLT  461 (608)
T ss_dssp             SSCSEEEESCC---TTCEEEEEEESCEEESC
T ss_pred             CCCeEEEcccC---CCCEEEEEEEeEEEECC
Confidence            32233478742   12224899999999876

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.24  E-value=3.7e-05  Score=75.00  Aligned_cols=148  Identities=14%  Similarity=0.199  Sum_probs=94.6

Q ss_pred             cCcceeeeccceEEeCC------------------cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee
Q 017716          130 SYKTIDGRGQRVKLTGK------------------GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR  191 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~------------------gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs  191 (367)
                      +++||.|.|. .+|.|.                  .|.+..++||.|++|+|+....   -+|.+.  +++|+|+++++.
T Consensus        68 ~nv~I~G~~g-G~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp~---~~i~i~--~~nv~i~~~~I~  141 (336)
T 1nhc_A           68 KDLTVTMADG-AVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPV---QAISVQ--ATNVHLNDFTID  141 (336)
T ss_dssp             ESCEEEECTT-CEEECCGGGTCCSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCSS---CCEEEE--EEEEEEESCEEE
T ss_pred             CCEEEEcCCC-eEEECCccccccccCcCCCCCCceEEEEeeeCcEEEEEEEEEeCCc---cEEEEE--eCCEEEEEEEEE
Confidence            6778877632 255544                  2677788899999999987643   357774  788888888886


Q ss_pred             c---------CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc------
Q 017716          192 D---------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY------  256 (367)
Q Consensus       192 ~---------~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~------  256 (367)
                      .         ..|| ||+ ..+++|+|++|.|...+-+.-++++        -+|++.+|.+.....    +..      
T Consensus       142 ~~~~d~~~~~ntDG-idi-~~s~nV~I~n~~i~~gDDciaiksg--------~nI~i~n~~~~~ghG----isiGS~g~~  207 (336)
T 1nhc_A          142 NSDGDDNGGHNTDG-FDI-SESTGVYISGATVKNQDDCIAINSG--------ESISFTGGTCSGGHG----LSIGSVGGR  207 (336)
T ss_dssp             CTTHHHHTCCSCCS-EEE-CSCEEEEEESCEEESSSEEEEESSE--------EEEEEESCEEESSSE----EEEEEESSS
T ss_pred             CCCcccccCCCCCc-EEe-cCCCeEEEEeCEEEcCCCEEEEeCC--------eEEEEEeEEEECCcC----ceEccCccc
Confidence            4         2677 777 4678888888888776666666543        267777777654321    221      


Q ss_pred             --C---eeEEEcceEECcccceeeec--CC-----ceEEEEceeEecCCc-ceee
Q 017716          257 --A---KVHLYNNYTRNWGIYAVCAS--VD-----SQIYSQCNIYEAGQK-KMAF  298 (367)
Q Consensus       257 --G---~~Hv~NN~~~n~~~yai~~~--~~-----a~i~~e~N~F~~g~~-~~v~  298 (367)
                        +   .+.|.|+.+.+.. +++...  .+     ..|.+|+..++.... +...
T Consensus       208 ~~~~v~nV~v~n~~~~~t~-~girIkt~~g~~G~v~nI~~~ni~~~~v~~~~i~i  261 (336)
T 1nhc_A          208 DDNTVKNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVI  261 (336)
T ss_dssp             SCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEE
T ss_pred             cCCCEEEEEEEeeEEECCC-cEEEEEEECCCCCEEeeeEEeeEEeeccccccEEE
Confidence              1   3567777777642 343211  11     356666666666554 5444

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.23  E-value=2e-05  Score=76.95  Aligned_cols=98  Identities=17%  Similarity=0.304  Sum_probs=76.5

Q ss_pred             CcEEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCce
Q 017716          146 KGLRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT  220 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~-----~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~  220 (367)
                      .+|.+..++||.|+|++|....     ....|||.+. .+++|+|++|.+....|. |.++. ..+|+|++|.+... .+
T Consensus       124 ~~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDDc-iaiks-g~nI~i~n~~~~~g-hG  199 (339)
T 2iq7_A          124 QAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVG-SSTGVYISGANVKNQDDC-LAINS-GTNITFTGGTCSGG-HG  199 (339)
T ss_dssp             CCEEEESCEEEEEESCEEECGGGGGTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESS-CC
T ss_pred             ceEEEeccCCEEEEEEEEECCccccccCCCCCcEEEc-CcceEEEEecEEecCCCE-EEEcC-CccEEEEeEEEECC-ce
Confidence            4688889999999999999642     3458999997 899999999999987776 88865 58999999999863 26


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCC
Q 017716          221 MLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       221 ~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      +-||+-.......--+|++.++.|.++
T Consensus       200 isiGSlg~~~~~~v~nV~v~n~~~~~~  226 (339)
T 2iq7_A          200 LSIGSVGGRSDNTVKTVTISNSKIVNS  226 (339)
T ss_dssp             EEEEEESSSSCCEEEEEEEEEEEEESC
T ss_pred             EEECcCCcccCCCEEEEEEEeeEEECC
Confidence            778873222222234899999998775

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.19  E-value=6.7e-05  Score=75.52  Aligned_cols=116  Identities=12%  Similarity=0.264  Sum_probs=79.1

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s  226 (367)
                      +|.+..++||.|+|++|..+.....|||.+. . ++|+|.+|.+..+.|+ |.++.++.+|+|++|.+.... ++-||+.
T Consensus       152 ~i~i~~~~nv~I~n~~I~~~d~~ntDGidi~-~-~nV~I~n~~i~~gDD~-Iai~s~~~nI~I~n~~~~~~~-GisIGS~  227 (422)
T 1rmg_A          152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW-G-SNIWVHDVEVTNKDEC-VTVKSPANNILVESIYCNWSG-GCAMGSL  227 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEE-E-EEEEEEEEEEESSSEE-EEEEEEEEEEEEEEEEEESSS-EEEEEEE
T ss_pred             EEEEeCcCCEEEEeEEEECCCCCCCccEeec-C-CeEEEEeeEEeCCCCe-EEeCCCCcCEEEEeEEEcCCc-ceeeccc
Confidence            4566667788888888876433357999997 6 9999999999876555 889877999999999987543 7777763


Q ss_pred             CCCCCCcceeEEEecceecCCCCCCCcccc--CeeEEEcceEECc
Q 017716          227 PSHVADRCIRVTIHHCFFDGTRQRHPRVRY--AKVHLYNNYTRNW  269 (367)
Q Consensus       227 d~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~--G~~Hv~NN~~~n~  269 (367)
                      ...  ..--+|++.++.|.++. +.=|++.  |...+.|-.|+|.
T Consensus       228 g~~--~~v~nV~v~n~~~~~~~-~Gi~Ikt~~g~G~v~nI~~~NI  269 (422)
T 1rmg_A          228 GAD--TDVTDIVYRNVYTWSSN-QMYMIKSNGGSGTVSNVLLENF  269 (422)
T ss_dssp             CTT--EEEEEEEEEEEEEESSS-CSEEEEEBBCCEEEEEEEEEEE
T ss_pred             CCC--CcEEEEEEEeEEEeccc-eEEEEEecCCCcEEEEEEEEeE
Confidence            211  11247899999887753 2333431  3334444445543

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.18  E-value=2.3e-05  Score=78.89  Aligned_cols=126  Identities=15%  Similarity=0.200  Sum_probs=80.6

Q ss_pred             eEeccCcceeeeccce----EEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec----CCCCc
Q 017716          126 LSVSSYKTIDGRGQRV----KLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD----YDDGL  197 (367)
Q Consensus       126 l~V~snkTI~G~G~gi----~I~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~----~~Dgl  197 (367)
                      +.|...-||+|+|..-    .-+-..|.+..++||.|++|+|+...   ..+|.+. .+++|.|++|.+..    ..|| 
T Consensus       104 i~i~G~G~IdG~G~~~w~~~~~rp~~i~~~~~~nv~I~~iti~nsp---~~~i~i~-~~~nv~I~n~~I~~~d~~ntDG-  178 (422)
T 1rmg_A          104 FSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAP---AFHFTMD-TCSDGEVYNMAIRGGNEGGLDG-  178 (422)
T ss_dssp             ECSSSCCEEECCTHHHHTTTCCCCEEEEEEEEEEEEEEEEEEECCS---SCSEEEE-EEEEEEEEEEEEECCSSTTCCS-
T ss_pred             EeeccCEEEECCcchhhcCCCCCceEEEEcccceEEEECeEEECCC---ceEEEEe-CcCCEEEEeEEEECCCCCCCcc-
Confidence            4555556777776321    00222467777888888888888643   3578886 78888888888875    4677 


Q ss_pred             eEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc---C------eeEEEcceEEC
Q 017716          198 IDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY---A------KVHLYNNYTRN  268 (367)
Q Consensus       198 idi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~---G------~~Hv~NN~~~n  268 (367)
                      ||+..  .+|+|++|.|...+-+.-+++.       ..+|++.+|.+...  +  -++.   |      .+.|.|+.+.+
T Consensus       179 idi~~--~nV~I~n~~i~~gDD~Iai~s~-------~~nI~I~n~~~~~~--~--GisIGS~g~~~~v~nV~v~n~~~~~  245 (422)
T 1rmg_A          179 IDVWG--SNIWVHDVEVTNKDECVTVKSP-------ANNILVESIYCNWS--G--GCAMGSLGADTDVTDIVYRNVYTWS  245 (422)
T ss_dssp             EEEEE--EEEEEEEEEEESSSEEEEEEEE-------EEEEEEEEEEEESS--S--EEEEEEECTTEEEEEEEEEEEEEES
T ss_pred             EeecC--CeEEEEeeEEeCCCCeEEeCCC-------CcCEEEEeEEEcCC--c--ceeecccCCCCcEEEEEEEeEEEec
Confidence            77754  7888888888776666666641       12677777776542  1  2222   1      34677776665


Q ss_pred             c
Q 017716          269 W  269 (367)
Q Consensus       269 ~  269 (367)
                      .
T Consensus       246 ~  246 (422)
T 1rmg_A          246 S  246 (422)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.16  E-value=3.6e-05  Score=75.28  Aligned_cols=98  Identities=15%  Similarity=0.216  Sum_probs=76.0

Q ss_pred             CcEEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCce
Q 017716          146 KGLRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT  220 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~-----~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~  220 (367)
                      .+|.+..++||.|+|++|....     ....|||.+. .+++|+|++|.++...|. |.++. ..+|+|++|.+... .+
T Consensus       128 ~~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~~~~g-hG  203 (339)
T 1ia5_A          128 QVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDDC-VAVNS-GENIYFSGGYCSGG-HG  203 (339)
T ss_dssp             CCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESS-SC
T ss_pred             ceEEEecccCeEEeeEEEECCccccccCCCCCcEEec-CCceEEEEeeEEEcCCCe-EEEeC-CeEEEEEeEEEECC-ce
Confidence            4688888999999999999642     3458999997 899999999999977666 88865 58999999999853 36


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCC
Q 017716          221 MLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       221 ~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      +-||+-.......--+|++.++.|.+.
T Consensus       204 isiGS~g~~~~~~v~nV~v~n~~~~~t  230 (339)
T 1ia5_A          204 LSIGSVGGRSDNTVKNVTFVDSTIINS  230 (339)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEEESC
T ss_pred             EEECcCCcccCCCEEEEEEEeeEEECC
Confidence            778873222222234899999988774

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.12  E-value=8.6e-05  Score=73.31  Aligned_cols=140  Identities=11%  Similarity=0.136  Sum_probs=99.9

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCcee
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTM  221 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~  221 (367)
                      .|.+.+++||.|++|+|+....   -.|.+. .+++|.|+++++..     ..|| ||+ ..+++|+|++|.|...+-+.
T Consensus       153 ~i~~~~~~nv~I~~iti~nsp~---~~i~~~-~~~~v~i~~v~I~~~~~~~NtDG-id~-~~s~nV~I~n~~i~~gDDcI  226 (376)
T 1bhe_A          153 LIQINKSKNFTLYNVSLINSPN---FHVVFS-DGDGFTAWKTTIKTPSTARNTDG-IDP-MSSKNITIAYSNIATGDDNV  226 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCSS---CSEEEE-SCEEEEEEEEEEECCTTCSSCCS-EEE-ESCEEEEEESCEEECSSCSE
T ss_pred             EEEEEcceEEEEEeEEEECCCc---EEEEEe-CCCcEEEEeEEEECCCCCCCCce-Eee-cCCceEEEEeCEEecCCCeE
Confidence            5788899999999999998653   467886 79999999999975     5788 898 47899999999999877776


Q ss_pred             EecCCCCCCCCcceeEEEecceecCCCCCCCccccC-------eeEEEcceEECcccceeeecC----C---ceEEEEce
Q 017716          222 LIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYA-------KVHLYNNYTRNWGIYAVCASV----D---SQIYSQCN  287 (367)
Q Consensus       222 LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G-------~~Hv~NN~~~n~~~yai~~~~----~---a~i~~e~N  287 (367)
                      -+.+...  ....-+|++.+|.+.....    +..|       .+.|.|+.+.+.. .++..-.    +   ..|.+|+.
T Consensus       227 aiks~~~--~~~s~nI~I~n~~~~~ghG----isiGSe~~~v~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~ni~f~ni  299 (376)
T 1bhe_A          227 AIKAYKG--RAETRNISILHNDFGTGHG----MSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNV  299 (376)
T ss_dssp             EEEECTT--SCCEEEEEEEEEEECSSSC----EEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEE
T ss_pred             EEcccCC--CCCceEEEEEeeEEEcccc----EEeccCCccEeeEEEEeeEEeCCC-cEEEEEEecCCCceEeeEEEEeE
Confidence            6653110  0123489999998865321    3333       4688999888753 3432211    1   35777888


Q ss_pred             eEecCCcceeee
Q 017716          288 IYEAGQKKMAFK  299 (367)
Q Consensus       288 ~F~~g~~~~v~~  299 (367)
                      .++....+.+++
T Consensus       300 ~~~~v~~~i~i~  311 (376)
T 1bhe_A          300 VMKNVAKPIVID  311 (376)
T ss_dssp             EEESCSEEEEEE
T ss_pred             EEeCCCceEEEE
Confidence            887777665554

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.06  E-value=7.8e-05  Score=72.70  Aligned_cols=97  Identities=18%  Similarity=0.331  Sum_probs=75.5

Q ss_pred             CcEEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCce
Q 017716          146 KGLRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT  220 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~-----~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~  220 (367)
                      .+|.+. ++||.|+|++|....     ....|||.+. .+++|+|.+|.+....|. |.++. ..+|+|++|.+..- .+
T Consensus       124 ~~i~i~-~~nv~i~~~~I~~~~~d~~~~~ntDGidi~-~s~nV~I~n~~i~~gDDc-iaiks-g~nI~i~n~~~~~g-hG  198 (336)
T 1nhc_A          124 QAISVQ-ATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQDDC-IAINS-GESISFTGGTCSGG-HG  198 (336)
T ss_dssp             CCEEEE-EEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSSEE-EEESS-EEEEEEESCEEESS-SE
T ss_pred             cEEEEE-eCCEEEEEEEEECCCcccccCCCCCcEEec-CCCeEEEEeCEEEcCCCE-EEEeC-CeEEEEEeEEEECC-cC
Confidence            358899 999999999999753     3468999997 899999999999987776 78865 58999999999852 36


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCC
Q 017716          221 MLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       221 ~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      +.||+-.......--+|++.++.|.++
T Consensus       199 isiGS~g~~~~~~v~nV~v~n~~~~~t  225 (336)
T 1nhc_A          199 LSIGSVGGRDDNTVKNVTISDSTVSNS  225 (336)
T ss_dssp             EEEEEESSSSCCEEEEEEEEEEEEESC
T ss_pred             ceEccCccccCCCEEEEEEEeeEEECC
Confidence            778873222222224899999988774

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=98.05  E-value=2.1e-05  Score=79.94  Aligned_cols=95  Identities=24%  Similarity=0.347  Sum_probs=74.0

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecC-----------CceEEEeCcee-
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCHF-  214 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~-----------s~~VTIS~n~f-  214 (367)
                      .+.+..++||.|+||+|... ....|||.+. .+++|+|++|.|..+.|. |.++.+           +.+|+|++|.+ 
T Consensus       215 ~i~~~~~~nv~i~~v~I~~~-~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaiksg~~~dg~~~~~ps~nI~I~n~~~~  291 (448)
T 3jur_A          215 CIHPVLSENVIIRNIEISST-GPNNDGIDPE-SCKYMLIEKCRFDTGDDS-VVIKSGRDADGRRIGVPSEYILVRDNLVI  291 (448)
T ss_dssp             SEEEESCEEEEEESCEEEEC-STTCCSBCCB-SCEEEEEESCEEEESSEE-EEEBCCCHHHHHHHCCCEEEEEEESCEEE
T ss_pred             eEeeeccCCEEEEeEEEeec-cCCCcccccc-CCcCEEEEeeEEEeCCCc-EEeccCccccccccCCCceeEEEEEeEEe
Confidence            57778899999999999874 3457999997 799999999999986554 888766           78999999999 


Q ss_pred             -cCCCceeEecCCCCCCCCcceeEEEecceecCC
Q 017716          215 -SSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       215 -~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                       ..-.-++-||+..+   ..--+|++.++.|.++
T Consensus       292 ~~~gh~gisiGS~~~---~~v~nV~v~n~~~~~t  322 (448)
T 3jur_A          292 SQASHGGLVIGSEMS---GGVRNVVARNNVYMNV  322 (448)
T ss_dssp             CSSCSEEEEECSSCT---TCEEEEEEESCEEESC
T ss_pred             cCCCcceEEECCccc---CcEEEEEEEEEEEecc
Confidence             32223677887521   2234899999998654

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.02  E-value=5.2e-05  Score=74.88  Aligned_cols=95  Identities=15%  Similarity=0.240  Sum_probs=67.5

Q ss_pred             EEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeE
Q 017716          148 LRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTML  222 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~-----~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~L  222 (367)
                      |.+. ++||.|+|++|....     ....|||.+. .++||+|.+|.+....|. |.++. ..+|+|++|.+... .++-
T Consensus       152 i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~~~~g-hGis  226 (362)
T 1czf_A          152 FSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVNS-GENIWFTGGTCIGG-HGLS  226 (362)
T ss_dssp             EEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEEC-SCEEEEEESCEEECSSCS-EEESS-EEEEEEESCEEESS-CCEE
T ss_pred             EEEe-eCCEEEEEEEEECCccccccCCCCCceeec-CcceEEEEeeEEecCCCE-EEEeC-CeEEEEEEEEEeCC-ceeE
Confidence            4555 667777777776521     3457999997 799999999999987776 88865 48999999999863 2677


Q ss_pred             ecCCCCCCCCcceeEEEecceecCC
Q 017716          223 IGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       223 iG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      ||+-.......--+|++.++.|.+.
T Consensus       227 iGS~G~~~~~~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          227 IGSVGDRSNNVVKNVTIEHSTVSNS  251 (362)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEEEEE
T ss_pred             EeeccccCCCCEEEEEEEeeEEECC
Confidence            8863111112224788888888664

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=97.97  E-value=0.00018  Score=70.74  Aligned_cols=145  Identities=15%  Similarity=0.061  Sum_probs=93.3

Q ss_pred             CCceEecCCCceEEEEceeeecC------------CCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEE
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDY------------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVT  238 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~------------~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT  238 (367)
                      +.+|.|. +++||+|-++.|...            .|+ |.+ .++++|-|-.|.|+...-.+|--..      ..-.||
T Consensus        82 G~Gi~I~-~a~NVIIrnl~i~~~~~~~~~~~~~~~~Da-I~i-~~s~nVWIDHcs~s~~~Dg~idi~~------~s~~vT  152 (340)
T 3zsc_A           82 GGGLVIK-DAQNVIIRNIHFEGFYMEDDPRGKKYDFDY-INV-ENSHHIWIDHITFVNGNDGAVDIKK------YSNYIT  152 (340)
T ss_dssp             EEEEEEE-SCEEEEEESCEEECCCCTTCTTSCSSCCCS-EEE-ESCEEEEEESCEEESCSSCSEEEET------TCEEEE
T ss_pred             cCceEEE-cCceEEEeCeEEECCccccCccCCcCCCCe-EEE-ecCCcEEEEeeeeccCCccceEEec------CCceEE
Confidence            3678886 799999999999864            233 666 4688999999998865444332111      113799


Q ss_pred             EecceecCCCCCCCcccc------------CeeEEEcceEECcccceeeecCCceEEEEceeEecCCcceeeee-ecccc
Q 017716          239 IHHCFFDGTRQRHPRVRY------------AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY-LTEKA  305 (367)
Q Consensus       239 ~hhN~f~~~~~R~Pr~r~------------G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~~v~~~-~~~~~  305 (367)
                      +-+|+|.+...=+ ++..            -++.+.+|+|.+.....-..+ ..++.+.||||.++.++.+... +..- 
T Consensus       153 ISnn~f~~h~k~~-LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~r-~G~~Hv~NN~~~n~~~~~~~~~~~~~y-  229 (340)
T 3zsc_A          153 VSWNKFVDHDKVS-LVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIR-FGMAHVFNNFYSMGLRTGVSGNVFPIY-  229 (340)
T ss_dssp             EESCEEESCSBCC-EECCCTTSCHHHHHHSCEEEEESCEEESCCBCTTEEE-SSEEEEESCEEECCCCCSCSSCCSCCE-
T ss_pred             EECcEeccCceee-EeCcCCCCccccccCCcEEEEECeEecCCCCCCCccc-CCeEEEEccEEECCccccccccceeee-
Confidence            9999998754322 2211            268999999998765544444 2478889999998432211000 0000 


Q ss_pred             CCcccCCCcEEEecCCeeecccc
Q 017716          306 SDKEEARTDCIRSEGDLSSLKLK  328 (367)
Q Consensus       306 ~~~~~~~~g~~~~~gn~f~ng~~  328 (367)
                       .........+..++|.|.+...
T Consensus       230 -ai~~~~~a~i~~E~N~F~~~~~  251 (340)
T 3zsc_A          230 -GVASAMGAKVHVEGNYFMGYGA  251 (340)
T ss_dssp             -EEEEETTCEEEEESCEEECSCH
T ss_pred             -eEecCCCCEEEEECcEEECCCc
Confidence             0122356788999999998654

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.93  E-value=4.8e-05  Score=74.70  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=72.9

Q ss_pred             cEEEeeeccEEEeeeEEeCCC-------------CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCce
Q 017716          147 GLRLKECEHVIICNLEFEGGK-------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCH  213 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~-------------~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~  213 (367)
                      .|.+..++||.|+|++|....             ....|||.+. .+++|+|++|.+....|. |.++. +.+|+|++|.
T Consensus       129 ~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks-g~nI~i~n~~  205 (349)
T 1hg8_A          129 CFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVTS-GTNIVVSNMY  205 (349)
T ss_dssp             EEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEESS-EEEEEEEEEE
T ss_pred             eEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEc-cccEEEEEeeEEecCCCe-EEeeC-CeEEEEEeEE
Confidence            467778999999999998631             2458999997 899999999999976665 88965 5999999999


Q ss_pred             ecCCCceeEecCCCCCCCCcceeEEEecceecCC
Q 017716          214 FSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       214 f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      +..- .++-||+-.......--+|++.++.|.++
T Consensus       206 ~~~g-hGisiGS~G~~~~~~v~nV~v~n~~~~~~  238 (349)
T 1hg8_A          206 CSGG-HGLSIGSVGGKSDNVVDGVQFLSSQVVNS  238 (349)
T ss_dssp             EESS-CCEEEEEESSSSCCEEEEEEEEEEEEEEE
T ss_pred             EeCC-cceEEccccccccCCEEEEEEEEEEEECC
Confidence            9852 25777763211112224899999888763

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=97.91  E-value=0.0015  Score=68.66  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=97.3

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec----CCCCceEeecCCceEEEeCceecCCCceeEe
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD----YDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~----~~Dglidi~~~s~~VTIS~n~f~~H~k~~Li  223 (367)
                      |.+.+++||.|++|+|+....   -+|.+. .+++|.|+++.+..    ..|| ||+ ..+++|+|++|.|...+-+.-+
T Consensus       334 i~~~~~~nv~I~giti~ns~~---~~i~~~-~~~nv~i~~v~i~~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDD~Iai  407 (608)
T 2uvf_A          334 MTLRGVENVYLAGFTVRNPAF---HGIMNL-ENHNVVANGLIHQTYDANNGDG-IEF-GNSQNVMVFNNFFDTGDDCINF  407 (608)
T ss_dssp             EEEESEEEEEEESCEEECCSS---CSEEEE-SCEEEEEESCEEECTTCTTCCS-EEE-ESCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEeeeeEEEeCcEEecCCC---CEEEEe-cCCCEEEeeEEEcCCCCCCCCe-EEe-cCCceEEEEeeEEecCCceEEe
Confidence            667789999999999998643   468887 79999999999864    4788 899 4789999999999988777666


Q ss_pred             cCCC-CCC-CC-cceeEEEecceecCCCCCCCccc----cC--eeEEEcceEECcccceeee-----cCC--ceEEEEce
Q 017716          224 GADP-SHV-AD-RCIRVTIHHCFFDGTRQRHPRVR----YA--KVHLYNNYTRNWGIYAVCA-----SVD--SQIYSQCN  287 (367)
Q Consensus       224 G~sd-~~~-~d-~~~~VT~hhN~f~~~~~R~Pr~r----~G--~~Hv~NN~~~n~~~yai~~-----~~~--a~i~~e~N  287 (367)
                      .+.. ... .. ..-+|++-+|.+.+...-. .+.    .+  .+.|.|+.+.+.. .++..     +.+  ..|.+|++
T Consensus       408 ksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~-~iGS~~~~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni  485 (608)
T 2uvf_A          408 AAGTGEKAQEQEPMKGAWLFNNYFRMGHGAI-VTGSHTGAWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNN  485 (608)
T ss_dssp             ECCCSGGGGGSCCEEEEEEESCEECSSSCSE-EEESCCTTCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEE
T ss_pred             cCCcCccccccccccCEEEEeEEEeCCCCeE-EEcccCCCCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEee
Confidence            4321 110 01 1248999999886532210 011    11  3789999998752 34422     111  36777887


Q ss_pred             eEecCC-cceeee
Q 017716          288 IYEAGQ-KKMAFK  299 (367)
Q Consensus       288 ~F~~g~-~~~v~~  299 (367)
                      .+++.. .+..++
T Consensus       486 ~m~~v~~~~i~I~  498 (608)
T 2uvf_A          486 AMRDLAKQVMVMT  498 (608)
T ss_dssp             EEEEESSEEEEEE
T ss_pred             EEEccccccEEEE
Confidence            777763 455444

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=97.89  E-value=0.00015  Score=71.65  Aligned_cols=125  Identities=12%  Similarity=0.119  Sum_probs=88.6

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec---------CCCCceEeecCCceEEEeCceecCCC
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHD  218 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~---------~~Dglidi~~~s~~VTIS~n~f~~H~  218 (367)
                      |.+.+++||.|++|+++....   -.|.+.  +++|.|++|.+..         ..|| ||+ ..+++|+|++|.|...+
T Consensus       129 i~~~~~~nv~i~~iti~nsp~---~~i~i~--~~nv~i~~~~I~~~~~d~~~~~NtDG-idi-~~s~nV~I~n~~i~~gD  201 (362)
T 1czf_A          129 FYAHGLDSSSITGLNIKNTPL---MAFSVQ--ANDITFTDVTINNADGDTQGGHNTDA-FDV-GNSVGVNIIKPWVHNQD  201 (362)
T ss_dssp             EEEEEEETEEEESCEEECCSS---CCEEEE--CSSEEEESCEEECGGGGTTTCCSCCS-EEE-CSCEEEEEESCEEECSS
T ss_pred             EEEeecccEEEEEEEEecCCc---cEEEEe--eCCEEEEEEEEECCccccccCCCCCc-eee-cCcceEEEEeeEEecCC
Confidence            788889999999999998654   468885  8999999999964         2688 898 47899999999999877


Q ss_pred             ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc--------C---eeEEEcceEECcccceeee--cCC-----c
Q 017716          219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY--------A---KVHLYNNYTRNWGIYAVCA--SVD-----S  280 (367)
Q Consensus       219 k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~--------G---~~Hv~NN~~~n~~~yai~~--~~~-----a  280 (367)
                      -+.-++++        -+|++.++.+.....    +..        +   .+.+.|+.+.+.. .++..  ..+     .
T Consensus       202 DcIaiksg--------~nI~i~n~~~~~ghG----isiGS~G~~~~~~v~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~  268 (362)
T 1czf_A          202 DCLAVNSG--------ENIWFTGGTCIGGHG----LSIGSVGDRSNNVVKNVTIEHSTVSNSE-NAVRIKTISGATGSVS  268 (362)
T ss_dssp             CSEEESSE--------EEEEEESCEEESSCC----EEEEEECSSSCCEEEEEEEEEEEEEEEE-EEEEEEEETTCCEEEE
T ss_pred             CEEEEeCC--------eEEEEEEEEEeCCce----eEEeeccccCCCCEEEEEEEeeEEECCc-eEEEEEEeCCCCceEe
Confidence            77777753        378999988765321    222        2   3567777766532 23322  112     3


Q ss_pred             eEEEEceeEecC
Q 017716          281 QIYSQCNIYEAG  292 (367)
Q Consensus       281 ~i~~e~N~F~~g  292 (367)
                      .|.+|+..++..
T Consensus       269 nI~~~ni~~~~v  280 (362)
T 1czf_A          269 EITYSNIVMSGI  280 (362)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             eEEEEeEEEECc
Confidence            455566655554

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=97.88  E-value=0.00032  Score=69.41  Aligned_cols=114  Identities=17%  Similarity=0.214  Sum_probs=76.6

Q ss_pred             CCceEecCCCceEEEEceeeecC-------CCCceEeecCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEEEecc
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDY-------DDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVTIHHC  242 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~-------~Dglidi~~~s~~VTIS~n~f~~H~k~~L-iG~sd~~~~d~~~~VT~hhN  242 (367)
                      +.+|.|...++||+|.++.|.+.       .|+ |.+. ++++|-|-.|.|+.-...++ .+..      ..-.||+-+|
T Consensus       123 G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~Da-I~i~-~s~nvwIDHcs~s~~~d~~~~~~~~------~s~~vTISnn  194 (359)
T 1qcx_A          123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDA-ITVD-DSDLVWIDHVTTARIGRQHIVLGTS------ADNRVTISYS  194 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCS-EEEE-SCCCEEEESCEEEEESSCSEEECSS------CCEEEEEESC
T ss_pred             cceEEEecCCCCEEEeCcEEEecCCcccccCce-eEec-CCceEEEEeeEeeccCcCceeeccc------ccccEEEECc
Confidence            45788853689999999999853       355 6663 68899999998874333332 2211      1238999999


Q ss_pred             eecCCCCCCCccc---------cC---eeEEEcceEECcccceeeecCCceEEEEceeEecC
Q 017716          243 FFDGTRQRHPRVR---------YA---KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (367)
Q Consensus       243 ~f~~~~~R~Pr~r---------~G---~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g  292 (367)
                      +|.+.....-+++         .|   .+.+.+|+|.+.....-..+.+..+.+.||||.+-
T Consensus       195 ~f~~~~~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~  256 (359)
T 1qcx_A          195 LIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNF  256 (359)
T ss_dssp             EEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEE
T ss_pred             EecCCccccccCcccccceeEEecCCCCeehcccEeccCcccCceecCCceEEEEccEEECc
Confidence            9986543221111         13   57899999988765544445456788899999873

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=97.80  E-value=0.00068  Score=66.67  Aligned_cols=137  Identities=12%  Similarity=0.034  Sum_probs=87.8

Q ss_pred             eCCcEEEeeeccEEEeeeEEeCCCCCCCCce-EecCCCceEEEEceeeecCCCCceEeecC------CceEEEeCceecC
Q 017716          144 TGKGLRLKECEHVIICNLEFEGGKGPDVDAI-QIKPKSKHIWIDRCSLRDYDDGLIDITRE------STDITVSRCHFSS  216 (367)
Q Consensus       144 ~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI-~i~~~s~nVWIDHcsfs~~~Dglidi~~~------s~~VTIS~n~f~~  216 (367)
                      .+.+|.|.+++||+|.|.+|..+    .|++ .+...+++|-|-+|.|.+...+++--..+      ...||+-+|+|..
T Consensus       149 ~~DaI~i~~s~nVwIDHcs~s~~----~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~  224 (346)
T 1pxz_A          149 DGDAITMRNVTNAWIDHNSLSDC----SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGP  224 (346)
T ss_dssp             CCCSEEEESCEEEEEESCEEECC----SSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECS
T ss_pred             CCCEEEEecCceEEEEeeEEecC----CCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeC
Confidence            35679999999999999999975    4666 56347899999999998654443322111      2389999999933


Q ss_pred             CCce--eEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECccc---ceeeecC---------Cce
Q 017716          217 HDKT--MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGI---YAVCASV---------DSQ  281 (367)
Q Consensus       217 H~k~--~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~---yai~~~~---------~a~  281 (367)
                      |...  -.+..         -.+-+-+|+|.+...+.=..+. .++.+.||||..-..   -.+..+.         +-.
T Consensus       225 ~~~~R~Pr~r~---------g~~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~  295 (346)
T 1pxz_A          225 NAGQRMPRARY---------GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV  295 (346)
T ss_dssp             SEEECTTEEES---------SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSC
T ss_pred             CccccCccEec---------ceEEEEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCcccccccc
Confidence            3221  11211         2678889999886544322222 468999999987532   1111111         113


Q ss_pred             EEEEceeEecCC
Q 017716          282 IYSQCNIYEAGQ  293 (367)
Q Consensus       282 i~~e~N~F~~g~  293 (367)
                      ..++++.|.++.
T Consensus       296 ~~~~g~~~~nG~  307 (346)
T 1pxz_A          296 WRSTRDAFINGA  307 (346)
T ss_dssp             EEEESCEEETTC
T ss_pred             EecCCCeEEece
Confidence            567777777765

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=97.77  E-value=0.00026  Score=68.96  Aligned_cols=110  Identities=15%  Similarity=0.253  Sum_probs=79.2

Q ss_pred             hHHHhhhcCC----CeEEEEEeceEEEecceeEec---cCcceeeecc-ceEEeCC-------------cEEEeeeccEE
Q 017716           99 SLREGCRMKE----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ-RVKLTGK-------------GLRLKECEHVI  157 (367)
Q Consensus        99 SLr~Ai~~~~----P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~-gi~I~G~-------------gi~i~~a~NVI  157 (367)
                      |+++||++..    .+++|+-..|+.+  +.|.|.   +++||.|.|. ...|.+.             .|.+. +++++
T Consensus        21 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   97 (319)
T 1gq8_A           21 TVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAV-GAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEEC-STTCE
T ss_pred             CHHHHHHhccccCCceEEEEEcCCeEe--eeeeccCCCccEEEEEcCCCccEEEecccccCCCCccceEEEEEE-CCCEE
Confidence            6999997632    2345555679984  678885   6799999974 4455532             36775 89999


Q ss_pred             EeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC
Q 017716          158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       158 IRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      ++||+|+...+   ...-||.+  .+.++.+.+|.|....|.|.+-.   ....+.+|+|..
T Consensus        98 ~~nlt~~Nt~g~~~~qAvAl~v--~~d~~~f~~c~f~g~QDTLy~~~---~r~~~~~c~I~G  154 (319)
T 1gq8_A           98 ARDITFQNTAGAAKHQAVALRV--GSDLSAFYRCDILAYQDSLYVHS---NRQFFINCFIAG  154 (319)
T ss_dssp             EEEEEEEECCCGGGCCCCSEEE--CCTTEEEEEEEEECSTTCEEECS---SEEEEESCEEEE
T ss_pred             EEEeEeEccCCCcCCceEEEEe--cCCcEEEEEeEECccceeeeecC---ccEEEEecEEEe
Confidence            99999997543   23456777  47889999999999999876542   345778888763

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=97.76  E-value=0.00028  Score=72.05  Aligned_cols=116  Identities=13%  Similarity=0.048  Sum_probs=78.5

Q ss_pred             cCcceeeeccceEEeCCc--------EEEeeeccEEEeeeEEeCCCCC---------CCCceEecCCCceEEEEceeeec
Q 017716          130 SYKTIDGRGQRVKLTGKG--------LRLKECEHVIICNLEFEGGKGP---------DVDAIQIKPKSKHIWIDRCSLRD  192 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~g--------i~i~~a~NVIIRnL~i~~g~~~---------d~DaI~i~~~s~nVWIDHcsfs~  192 (367)
                      .|++|.|.|...+|.|.|        |.+..++||.|++|+|...+.-         +.|||.+  .+++|+|.+|.+..
T Consensus       109 ~nItI~G~Gg~~~iDG~G~~~~rp~~i~~~~~~Nv~I~gIti~n~w~ih~s~~V~i~NtDGi~i--~s~nV~I~n~~I~~  186 (464)
T 1h80_A          109 RNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLH--WSRNGIIERIKQNN  186 (464)
T ss_dssp             EEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSEEECEEEETTEEE--EEEEEEEEEEEEES
T ss_pred             cceEEECcCcceEEeCCCCCCCCceEEEEEeeccEEEeeeEEeccceEeeceeeeeecCCCcee--eccCEEEeceEEec
Confidence            577888876445666653        5677899999999999876531         2477777  48999999999998


Q ss_pred             CCCCce-EeecCCceEEEeCceecCCCceeEecCCCC----CCCCcceeEEEecceecCCC
Q 017716          193 YDDGLI-DITRESTDITVSRCHFSSHDKTMLIGADPS----HVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       193 ~~Dgli-di~~~s~~VTIS~n~f~~H~k~~LiG~sd~----~~~d~~~~VT~hhN~f~~~~  248 (367)
                      ..|+.- .....+.+|+|++|.|.. ..++-|...+.    .....--+|+|.++.+.+..
T Consensus       187 gddgiGs~~~~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~nv~  246 (464)
T 1h80_A          187 ALFGYGLIQTYGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGL  246 (464)
T ss_dssp             CCTTCEEEEESEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSS
T ss_pred             CCCeEEecccCCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEEEEEEeEEEECCc
Confidence            866531 223568899999999887 44443332210    00111247888888877653

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=97.74  E-value=0.00027  Score=68.80  Aligned_cols=109  Identities=18%  Similarity=0.311  Sum_probs=78.2

Q ss_pred             hHHHhhhcCC----CeEEEEEeceEEEecceeEec---cCcceeeecc-ceEEeCC-------------cEEEeeeccEE
Q 017716           99 SLREGCRMKE----PLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ-RVKLTGK-------------GLRLKECEHVI  157 (367)
Q Consensus        99 SLr~Ai~~~~----P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~-gi~I~G~-------------gi~i~~a~NVI  157 (367)
                      |+++||++..    .+++|+-..|+.  ++.|.|.   +++||.|.|. ...|.+.             .|.+. +++++
T Consensus        17 TIq~AI~aap~~~~~~~~I~I~~G~Y--~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   93 (317)
T 1xg2_A           17 TLAEAVAAAPDKSKTRYVIYVKRGTY--KENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAV-GQGFI   93 (317)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEE--ECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSEEEC-STTCE
T ss_pred             cHHHHHhhcccCCCceEEEEEcCCEE--eeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEEEEE-CCCEE
Confidence            6999997632    234555567998  4678885   6799999974 4455543             36774 89999


Q ss_pred             EeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       158 IRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      ++||+|+...+   ...-||.+  .+.++.+.+|.|....|.|++-.   ..-.+.+|+|.
T Consensus        94 ~~~lt~~Nt~g~~~~qAvAl~v--~~d~~~f~~c~f~g~QDTLy~~~---~r~~~~~c~I~  149 (317)
T 1xg2_A           94 LQDICIQNTAGPAKDQAVALRV--GADMSVINRCRIDAYQDTLYAHS---QRQFYRDSYVT  149 (317)
T ss_dssp             EESCEEEECCCGGGCCCCSEEE--CCTTEEEESCEEECSTTCEEECS---SEEEEESCEEE
T ss_pred             EEEeEEecccCCccCceEEEEE--eCCcEEEEEeEeCccccceeecC---ccEEEEeeEEE
Confidence            99999997643   23456777  47889999999999999866532   23466777776

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=97.69  E-value=0.00088  Score=65.79  Aligned_cols=113  Identities=12%  Similarity=0.247  Sum_probs=79.0

Q ss_pred             hhHHHhhhcCCC---eEEEEEeceEEEecceeEec-cCcceeeecc-ceEEeCC-------------------cEEEeee
Q 017716           98 GSLREGCRMKEP---LWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQ-RVKLTGK-------------------GLRLKEC  153 (367)
Q Consensus        98 GSLr~Ai~~~~P---~~IVf~vsGtI~l~~~l~V~-snkTI~G~G~-gi~I~G~-------------------gi~i~~a  153 (367)
                      -|+++||++..+   +++|+-..|+.+  +.|.|. +++||.|.|. ...|.+.                   .|.+. +
T Consensus        19 ~TIq~Ai~aap~~~~~~~I~I~~G~Y~--E~V~I~k~~Itl~G~g~~~tiI~~~~~~~~~~~~g~~~gT~~satv~v~-a   95 (342)
T 2nsp_A           19 KTIADAIASAPAGSTPFVILIKNGVYN--ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITIS-A   95 (342)
T ss_dssp             SSHHHHHHTSCSSSSCEEEEECSEEEE--CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEEC-S
T ss_pred             chHHHHHHhcccCCCcEEEEEeCCEEE--EEEEEecCeEEEEecCCCCeEEEecccccccccccCcccccceeEEEEE-C
Confidence            369999986432   345555679984  567775 6799999974 3445332                   36665 8


Q ss_pred             ccEEEeeeEEeCCCC---------------CCCCceEe--cCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC
Q 017716          154 EHVIICNLEFEGGKG---------------PDVDAIQI--KPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       154 ~NVIIRnL~i~~g~~---------------~d~DaI~i--~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      ++++++||+|+....               ....++.|  .-.+.++.+.+|.|....|.|++-   ....-+.+|+|..
T Consensus        96 ~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~QDTLy~~---~gr~~~~~c~I~G  172 (342)
T 2nsp_A           96 KDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVS---GGRSFFSDCRISG  172 (342)
T ss_dssp             BSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECSTTCEEEC---SSEEEEESCEEEE
T ss_pred             CCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecccceEEEC---CCCEEEEcCEEEe
Confidence            999999999997541               12233334  446889999999999999987654   3467778888763

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=97.60  E-value=0.00097  Score=67.68  Aligned_cols=142  Identities=14%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec---CCCCceEeecCCceEEEeCceecCCCceeEe
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD---YDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~---~~Dglidi~~~s~~VTIS~n~f~~H~k~~Li  223 (367)
                      .|.+.+++||.|++|+++....   -.|.+. .+++|.|+++++..   ..|| ||+ ..+++|+|++|.|...+-+.-+
T Consensus       192 ~i~~~~~~nv~i~giti~nsp~---~~i~~~-~~~nv~i~~v~I~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDDcIai  265 (448)
T 3jur_A          192 FVQFYRCRNVLVEGVKIINSPM---WCIHPV-LSENVIIRNIEISSTGPNNDG-IDP-ESCKYMLIEKCRFDTGDDSVVI  265 (448)
T ss_dssp             SEEEESCEEEEEESCEEESCSS---CSEEEE-SCEEEEEESCEEEECSTTCCS-BCC-BSCEEEEEESCEEEESSEEEEE
T ss_pred             EEEEEcccceEEEeeEEEeCCC---ceEeee-ccCCEEEEeEEEeeccCCCcc-ccc-cCCcCEEEEeeEEEeCCCcEEe
Confidence            4788899999999999998654   368887 79999999999975   6899 788 4689999999999988877777


Q ss_pred             cCCCCCC----CCcceeEEEecceecCCCCCCCcccc------C--eeEEEcceEECcccceeeec----CC---ceEEE
Q 017716          224 GADPSHV----ADRCIRVTIHHCFFDGTRQRHPRVRY------A--KVHLYNNYTRNWGIYAVCAS----VD---SQIYS  284 (367)
Q Consensus       224 G~sd~~~----~d~~~~VT~hhN~f~~~~~R~Pr~r~------G--~~Hv~NN~~~n~~~yai~~~----~~---a~i~~  284 (367)
                      .+.....    .-..-+|++.++++.+..... -+..      +  .+.+.|+++.+.. .++..-    .+   ..|.+
T Consensus       266 ksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~-gisiGS~~~~~v~nV~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~f  343 (448)
T 3jur_A          266 KSGRDADGRRIGVPSEYILVRDNLVISQASHG-GLVIGSEMSGGVRNVVARNNVYMNVE-RALRLKTNSRRGGYMENIFF  343 (448)
T ss_dssp             BCCCHHHHHHHCCCEEEEEEESCEEECSSCSE-EEEECSSCTTCEEEEEEESCEEESCS-EEEEEECCTTTCSEEEEEEE
T ss_pred             ccCccccccccCCCceeEEEEEeEEecCCCcc-eEEECCcccCcEEEEEEEEEEEeccc-ceEEEEEEcCCCceEeeEEE
Confidence            6542100    000247899888873222211 1222      1  4688899887642 444221    11   24555


Q ss_pred             EceeEecCCcce
Q 017716          285 QCNIYEAGQKKM  296 (367)
Q Consensus       285 e~N~F~~g~~~~  296 (367)
                      |+...++...+.
T Consensus       344 ~ni~m~~v~~~~  355 (448)
T 3jur_A          344 IDNVAVNVSEEV  355 (448)
T ss_dssp             ESCEEEEESSEE
T ss_pred             EEEEEECCcccc
Confidence            665555555554

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.59  E-value=0.00028  Score=68.95  Aligned_cols=94  Identities=15%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             cEEEeeecc-EEEeeeEEeCCC------CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCc
Q 017716          147 GLRLKECEH-VIICNLEFEGGK------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK  219 (367)
Q Consensus       147 gi~i~~a~N-VIIRnL~i~~g~------~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k  219 (367)
                      .|.+..++| |.|+||+|....      ....|||.+  .++||+|.+|.+....|. |.++.+ .+|+|++|.+... .
T Consensus       121 ~i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi--~s~nV~I~n~~i~~gDDc-Iaiksg-~nI~i~n~~~~~g-h  195 (335)
T 1k5c_A          121 AISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV--SANNVTIQNCIVKNQDDC-IAINDG-NNIRFENNQCSGG-H  195 (335)
T ss_dssp             CEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE--ECSSEEEESCEEESSSCS-EEEEEE-EEEEEESCEEESS-C
T ss_pred             eEEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc--cCCeEEEEeeEEEcCCCE-EEeeCC-eeEEEEEEEEECC-c
Confidence            467778899 999999998742      456899999  589999999999976665 889765 8999999999863 2


Q ss_pred             eeEecCCCCCCCCcceeEEEecceecCC
Q 017716          220 TMLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       220 ~~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      ++-||+...  ...--+|++.++.+.+.
T Consensus       196 GisIGS~g~--~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          196 GISIGSIAT--GKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             CEEEEEECT--TCEEEEEEEESCEEEEE
T ss_pred             cCeEeeccC--CCCEEEEEEEeeEEECC
Confidence            577776431  11123788888888764

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.53  E-value=0.0018  Score=64.02  Aligned_cols=114  Identities=13%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             CCceEecCCCceEEEEceeeec-------CCCCceEeecCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEEEecc
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRD-------YDDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVTIHHC  242 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~-------~~Dglidi~~~s~~VTIS~n~f~~H~k~~L-iG~sd~~~~d~~~~VT~hhN  242 (367)
                      +.+|.|...++||+|.++.|.+       ..|+ |.+ .++++|-|-.|.|+.-...++ .|..      ..-.||+-+|
T Consensus       123 G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~Da-I~i-~~s~nVwIDHcs~s~~~d~~~~~g~~------~s~~VTISnn  194 (359)
T 1idk_A          123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTS------ADNRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCC------TTCEEEEESC
T ss_pred             cceEEEecCCCcEEEeCeEEEcccccccccCCc-eee-cCCCcEEEEeeEeecCCCCcEEeccc------CcceEEEECc
Confidence            4578885368999999999985       3465 666 468999999999884333332 1211      1138999999


Q ss_pred             eecCCCCCCCc--------cc-cC---eeEEEcceEECcccceeeecCCceEEEEceeEecC
Q 017716          243 FFDGTRQRHPR--------VR-YA---KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (367)
Q Consensus       243 ~f~~~~~R~Pr--------~r-~G---~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g  292 (367)
                      +|.+.....-+        .- .|   .+.+.+|+|.+.....-..+.+..+.+.||||.+-
T Consensus       195 ~f~~~~~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~  256 (359)
T 1idk_A          195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDI  256 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEE
T ss_pred             EecCCcccccccCccccceEEEEecCCCeEEEceEeecCcccCccccCCceEEEECCEEecc
Confidence            99754422111        11 13   68999999998766555555555688999999873

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.48  E-value=0.00063  Score=66.71  Aligned_cols=128  Identities=16%  Similarity=0.209  Sum_probs=89.3

Q ss_pred             cEEE-e-eeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec-----------------CCCCceEeecCCceE
Q 017716          147 GLRL-K-ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDI  207 (367)
Q Consensus       147 gi~i-~-~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~-----------------~~Dglidi~~~s~~V  207 (367)
                      .|.+ . .++||.|++|+|+...   ..+|.+. .+++|.|+++++..                 ..|| ||+ ..+++|
T Consensus       104 ~i~~~~~~~~nv~I~giti~nsp---~~~i~i~-~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDG-id~-~~s~nV  177 (349)
T 1hg8_A          104 HFIVVQKTTGNSKITNLNIQNWP---VHCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHV  177 (349)
T ss_dssp             EEEEEEEEESSEEEESCEEECCS---SEEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEE
T ss_pred             EEEEeecCcCcEEEEEEEEEcCC---CceEEEe-ccCCEEEEEEEEECCCCccccccccccccCCCCCe-EEE-ccccEE
Confidence            3677 6 6779999999999864   4689997 89999999999974                 2677 788 578999


Q ss_pred             EEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc--------C---eeEEEcceEECcccceeee
Q 017716          208 TVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY--------A---KVHLYNNYTRNWGIYAVCA  276 (367)
Q Consensus       208 TIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~--------G---~~Hv~NN~~~n~~~yai~~  276 (367)
                      +|.+|.|...+-+.-+.++        -+|++.++.+.....    +..        +   .+.|.|+.+.+.. .++..
T Consensus       178 ~I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG----isiGS~G~~~~~~v~nV~v~n~~~~~~~-~GirI  244 (349)
T 1hg8_A          178 TLDNNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHG----LSIGSVGGKSDNVVDGVQFLSSQVVNSQ-NGCRI  244 (349)
T ss_dssp             EEEEEEEECSSCSEEESSE--------EEEEEEEEEEESSCC----EEEEEESSSSCCEEEEEEEEEEEEEEEE-EEEEE
T ss_pred             EEEeeEEecCCCeEEeeCC--------eEEEEEeEEEeCCcc----eEEccccccccCCEEEEEEEEEEEECCC-cEEEE
Confidence            9999999877766666553        378888888764321    222        2   3577788776632 33322


Q ss_pred             --cCC-----ceEEEEceeEecCC
Q 017716          277 --SVD-----SQIYSQCNIYEAGQ  293 (367)
Q Consensus       277 --~~~-----a~i~~e~N~F~~g~  293 (367)
                        ..+     ..|.+|+..++...
T Consensus       245 Kt~~g~~G~v~nI~~~ni~~~~v~  268 (349)
T 1hg8_A          245 KSNSGATGTINNVTYQNIALTNIS  268 (349)
T ss_dssp             EEETTCCEEEEEEEEEEEEEEEEE
T ss_pred             EecCCCCccccceEEEEEEEEccc
Confidence              112     35666666666654

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=97.44  E-value=0.0033  Score=61.43  Aligned_cols=140  Identities=18%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             CCcEEEee-eccEEEeeeEEeCCC--C---CCCC-ceEecCCCceEEEEceeeecCCCCceEeecCC-----ceEEEeCc
Q 017716          145 GKGLRLKE-CEHVIICNLEFEGGK--G---PDVD-AIQIKPKSKHIWIDRCSLRDYDDGLIDITRES-----TDITVSRC  212 (367)
Q Consensus       145 G~gi~i~~-a~NVIIRnL~i~~g~--~---~d~D-aI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s-----~~VTIS~n  212 (367)
                      +.+|.|.. ++||+|.|..|..+.  .   ...| .|.+..++.+|=|-+|.|.+...++|--..++     ..||+-+|
T Consensus       120 ~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~~~~~vT~~~N  199 (326)
T 3vmv_A          120 GTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDKITYHHN  199 (326)
T ss_dssp             SCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEECEEECSSSCGGGCCEEEEEESC
T ss_pred             CCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecCceEEEECCCCCCcccCccEEEEee
Confidence            45688886 899999999997543  1   1134 45676578999999999987555544322221     37999999


Q ss_pred             eecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECcc-----------ccee----e
Q 017716          213 HFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWG-----------IYAV----C  275 (367)
Q Consensus       213 ~f~~H~-k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~-----------~yai----~  275 (367)
                      +|.+.. +.=++..         -.+-+.+|+|.+...+.-..+. +++-+.||||.+..           ...+    +
T Consensus       200 ~f~~~~~R~Pr~r~---------G~~Hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 3vmv_A          200 YFNNLNSRVPLIRY---------ADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPTTGFIKGPVGWFYG  270 (326)
T ss_dssp             EEEEEEECTTEEES---------CEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEESCCSBCTTTCCBCSSEECCSC
T ss_pred             EecCCcCcCCcccC---------CcEEEEccEEECCCceEEeecCCcEEEEEceEEECCcCccccccccccccceeeccC
Confidence            996421 1111111         1466778999887666544444 57899999999862           1112    1


Q ss_pred             ecCCceEEEEceeEecCC
Q 017716          276 ASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       276 ~~~~a~i~~e~N~F~~g~  293 (367)
                      ....+.+..++|.|.+..
T Consensus       271 s~~~g~~~~~~n~~~n~~  288 (326)
T 3vmv_A          271 SPSTGYWNLRGNVFVNTP  288 (326)
T ss_dssp             SSSBCEEEEESCEEESSC
T ss_pred             CCCceEEEEECCeEccCc
Confidence            223355677899998753

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=97.33  E-value=0.0026  Score=65.63  Aligned_cols=142  Identities=17%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEec-------CCCceEEEEceeeecCCC-Cc-------eEeec------CCc
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIK-------PKSKHIWIDRCSLRDYDD-GL-------IDITR------EST  205 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~-------~~s~nVWIDHcsfs~~~D-gl-------idi~~------~s~  205 (367)
                      ++.+. ++++.|+|.+|++....  |.+.+.       -.+++.-|+||.|....+ |.       |.+..      .+.
T Consensus       120 ~iav~-G~~~~I~nn~I~~~~~g--d~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~  196 (506)
T 1dbg_A          120 LVAIY-GSYNRITACVFDCFDEA--NSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGM  196 (506)
T ss_dssp             SEEEC-SSSCEEESCEEESCCSS--CSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCC
T ss_pred             ceEEe-cCCeEEEeeEEEcCCCC--ceeeEeecccceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccC
Confidence            34554 58889999999875321  223331       124555688888876322 11       22221      135


Q ss_pred             eEEEeCceecCCC------ceeEecCC-----CCCCC-------Ccc--------eeEEEecceecCCCCCCCccccCe-
Q 017716          206 DITVSRCHFSSHD------KTMLIGAD-----PSHVA-------DRC--------IRVTIHHCFFDGTRQRHPRVRYAK-  258 (367)
Q Consensus       206 ~VTIS~n~f~~H~------k~~LiG~s-----d~~~~-------d~~--------~~VT~hhN~f~~~~~R~Pr~r~G~-  258 (367)
                      +..|.+|+|....      ..+-+|.+     +...+       +..        -+.++.+|.|.++.. .=.++++. 
T Consensus       197 ~~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~~~gg~aim~skS~~n~i~~N~~~~~~g-gi~l~~~~~  275 (506)
T 1dbg_A          197 YHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQG-TMNFRHGDH  275 (506)
T ss_dssp             CCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBSCEEESCEEESCSS-EEEEEECSS
T ss_pred             CeEEeCcEEcccccCCCccccEEEEEEecccCCcEEECCEEEeccCcEEEEEEecCCEEEECCEEEcccC-cEEEeecCc
Confidence            7778888877432      12223321     10000       100        025666776665533 22235443 


Q ss_pred             eEEEcceEECcc----cceeeecCCceEEEEceeEecCC
Q 017716          259 VHLYNNYTRNWG----IYAVCASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       259 ~Hv~NN~~~n~~----~yai~~~~~a~i~~e~N~F~~g~  293 (367)
                      ..|.+|++.+..    ..++-. .++...+.+|+|+.-.
T Consensus       276 s~I~~N~f~gN~~~~~~~Gi~i-~~~~~~I~nN~f~~~~  313 (506)
T 1dbg_A          276 QVAINNFYIGNDQRFGYGGMFV-WGSRHVIACNYFELSE  313 (506)
T ss_dssp             CEEESCEEEECSSSSCBCCEEE-CSBSCEEESCEEEESS
T ss_pred             cEEECCEEECCcCccCceEEEE-ECCCCEEECCEEECCc
Confidence            578888876543    123333 2333467888888764

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.27  E-value=0.00066  Score=71.01  Aligned_cols=104  Identities=17%  Similarity=0.119  Sum_probs=75.6

Q ss_pred             cCcceeeeccceEEeCC---cEEEeeeccE--EEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCC
Q 017716          130 SYKTIDGRGQRVKLTGK---GLRLKECEHV--IICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRES  204 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~---gi~i~~a~NV--IIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s  204 (367)
                      .|++|.|.    +|...   .+.+..++||  .|+|+++........|||.+.   +||.|.+|.|..+.|. |.++  +
T Consensus       333 ~NV~I~Gi----ti~NSp~w~i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~---~NV~I~nc~I~~gDDc-IaIk--s  402 (574)
T 1ogo_X          333 QTWYCVGP----TINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIY---PNSVVHDVFWHVNDDA-IKIY--Y  402 (574)
T ss_dssp             EEEEEESC----EEECCSSCSEEECSSSCEEEEEEEEEEECCCSTTCCCCBCC---TTCEEEEEEEEESSCS-EECC--S
T ss_pred             eeEEEECe----EEECCCCcEEeecCCCChhhEEEeeEeeCCCCCCCccCccc---CCEEEEeeEEECCCCE-EEEC--C
Confidence            45555543    45443   3677789999  999999876444448999984   8999999999999884 7775  4


Q ss_pred             ceEEEeCceec-CCCce-eEecCCCCCCCCcceeEEEecceecCC
Q 017716          205 TDITVSRCHFS-SHDKT-MLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       205 ~~VTIS~n~f~-~H~k~-~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      .+|+|++|.+. .|.-+ +-+|++...    --+|+|.++.+.++
T Consensus       403 ~NI~I~nc~i~~g~g~g~IsIGS~~g~----V~NV~v~N~~i~~~  443 (574)
T 1ogo_X          403 SGASVSRATIWKCHNDPIIQMGWTSRD----ISGVTIDTLNVIHT  443 (574)
T ss_dssp             TTCEEEEEEEEECSSSCSEECCSSCCC----EEEEEEEEEEEEEC
T ss_pred             ccEEEEeEEEECCCCCceEEEcCCCCc----EEEEEEEeEEEECC
Confidence            99999999986 46555 678874211    23678777776543

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.26  E-value=0.00082  Score=65.62  Aligned_cols=102  Identities=15%  Similarity=0.248  Sum_probs=77.4

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCce-EEEEceeeec----------CCCCceEeecCCceEEEeCceecC
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKH-IWIDRCSLRD----------YDDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~n-VWIDHcsfs~----------~~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      |.+..++ |.|++|+++....   ..|.+. .+++ |.|+++++..          ..|| ||+  .+++|+|++|.|..
T Consensus       100 i~~~~~~-v~i~giti~nsp~---~~i~i~-~~~n~v~i~~v~I~~~~~d~~~~~~NtDG-idi--~s~nV~I~n~~i~~  171 (335)
T 1k5c_A          100 FLKIKGS-GTYKKFEVLNSPA---QAISVG-PTDAHLTLDGITVDDFAGDTKNLGHNTDG-FDV--SANNVTIQNCIVKN  171 (335)
T ss_dssp             SEEEEEE-EEEESCEEESCSS---CCEEEE-EEEEEEEEESCEEECGGGGGGGCCCSCCS-EEE--ECSSEEEESCEEES
T ss_pred             EEEeceE-EEEEEEEEECCCc---ceEEEE-ccCCeEEEEEEEEECCCCcccccCCCCCe-Ecc--cCCeEEEEeeEEEc
Confidence            6778888 9999999998654   568887 7899 9999999964          3678 899  79999999999998


Q ss_pred             CCceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc------C---eeEEEcceEECc
Q 017716          217 HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY------A---KVHLYNNYTRNW  269 (367)
Q Consensus       217 H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~------G---~~Hv~NN~~~n~  269 (367)
                      -+-+.-+++.        -+|++.++.+.....    +..      +   .+.+.|+.+.+.
T Consensus       172 gDDcIaiksg--------~nI~i~n~~~~~ghG----isIGS~g~~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          172 QDDCIAINDG--------NNIRFENNQCSGGHG----ISIGSIATGKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             SSCSEEEEEE--------EEEEEESCEEESSCC----EEEEEECTTCEEEEEEEESCEEEEE
T ss_pred             CCCEEEeeCC--------eeEEEEEEEEECCcc----CeEeeccCCCCEEEEEEEeeEEECC
Confidence            7777666653        378998887765322    222      2   246777776653

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=97.22  E-value=0.01  Score=58.74  Aligned_cols=112  Identities=18%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             hHHHhhhcCCC---eEEEEEeceEEEecceeEec-cCcceeeecc-ceEEeC-------------------CcEEEeeec
Q 017716           99 SLREGCRMKEP---LWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQ-RVKLTG-------------------KGLRLKECE  154 (367)
Q Consensus        99 SLr~Ai~~~~P---~~IVf~vsGtI~l~~~l~V~-snkTI~G~G~-gi~I~G-------------------~gi~i~~a~  154 (367)
                      ++++||++..+   +++|+-..|+.  ++.|.|. +++||.|.|. ...|.+                   ..|.+. ++
T Consensus        46 TIq~Ai~aa~~~~~~~~I~I~~G~Y--~E~v~I~k~~itl~G~g~~~TiIt~~~~~~~~~~~g~~~gt~~saTv~V~-a~  122 (364)
T 3uw0_A           46 SINAALKSAPKDDTPFIIFLKNGVY--TERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVN-AP  122 (364)
T ss_dssp             CHHHHHHHSCSSSSCEEEEECSEEE--CCCEEECSTTEEEEESCTTTEEEEECCCTTSBCTTCSBCCTTTCCSEEEC-ST
T ss_pred             cHHHHHhhcccCCCcEEEEEeCCEE--EEEEEEcCCeEEEEecCCCCeEEEccccccccccccccccccCeeEEEEE-CC
Confidence            58899876332   23455567988  4667786 5799999975 344543                   235564 89


Q ss_pred             cEEEeeeEEeCCCC-----------------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          155 HVIICNLEFEGGKG-----------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       155 NVIIRnL~i~~g~~-----------------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      +++++||+|+....                 ...-||.+...+.++.+.+|.|....|.|++-  .+...-+.+|+|.
T Consensus       123 ~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~--~~gr~yf~~c~I~  198 (364)
T 3uw0_A          123 NFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSK--TGSRSYFSDCEIS  198 (364)
T ss_dssp             TCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEEC--TTCEEEEESCEEE
T ss_pred             CEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEecccceEeC--CCCCEEEEcCEEE
Confidence            99999999987531                 11235666435889999999999999997654  2457777888876

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.01  E-value=0.0032  Score=65.86  Aligned_cols=66  Identities=12%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             eeccEEEeeeEEeCCCCCCCCceEecCCCceE--EEEceeeec----CCCCceEeecCCceEEEeCceecCCCceeEecC
Q 017716          152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHI--WIDRCSLRD----YDDGLIDITRESTDITVSRCHFSSHDKTMLIGA  225 (367)
Q Consensus       152 ~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nV--WIDHcsfs~----~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~  225 (367)
                      +++||.|++|+|.....   -.|.+. .+++|  .|+.++...    ..|| ||+.   ++|+|++|.|...+-+.-|++
T Consensus       331 ~c~NV~I~Giti~NSp~---w~i~~~-~c~nV~~~I~nv~i~~~~~~nTDG-IDi~---~NV~I~nc~I~~gDDcIaIks  402 (574)
T 1ogo_X          331 GGQTWYCVGPTINAPPF---NTMDFN-GNSGISSQISDYKQVGAFFFQTDG-PEIY---PNSVVHDVFWHVNDDAIKIYY  402 (574)
T ss_dssp             SSEEEEEESCEEECCSS---CSEEEC-SSSCEEEEEEEEEEECCCSTTCCC-CBCC---TTCEEEEEEEEESSCSEECCS
T ss_pred             CceeEEEECeEEECCCC---cEEeec-CCCChhhEEEeeEeeCCCCCCCcc-Cccc---CCEEEEeeEEECCCCEEEECC
Confidence            79999999999998643   357786 79999  999998642    4888 8985   999999999998887887776

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=96.97  E-value=0.017  Score=60.78  Aligned_cols=68  Identities=24%  Similarity=0.162  Sum_probs=52.2

Q ss_pred             eccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCC----CCceEeecCCceEEEeCceecCCCceeEec
Q 017716          153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYD----DGLIDITRESTDITVSRCHFSSHDKTMLIG  224 (367)
Q Consensus       153 a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~----Dglidi~~~s~~VTIS~n~f~~H~k~~LiG  224 (367)
                      ++||.|+|-+|+..   .+|+|.|. .++||+|.+|.+....    ..-|.+..++.+|||++|.|.+-..+..|-
T Consensus       182 S~NV~I~Nc~I~~t---GDDcIaIk-sseNI~I~Nc~~~gp~G~S~~~GIsIGsgs~NVtV~Nc~i~nt~~GIrIK  253 (609)
T 3gq8_A          182 SENIWIENCEATGF---GDDGITTH-HSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIK  253 (609)
T ss_dssp             CEEEEEESCEEESC---SSCSEEEC-SCEEEEEESCEEECCSSCSSCCSEEECTTCEEEEEESEEEESSSEEEEEE
T ss_pred             ceeEEEEeeEEEec---CCCEEEec-CCeeEEEEeEEEECCCCCCCcccEEccCCcccEEEEeeEEECCCCEEEEE
Confidence            78999999999752   35899996 7899999999995432    233677666789999999998877776554

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=96.89  E-value=0.0032  Score=65.45  Aligned_cols=91  Identities=10%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             EEEee-e-cc--EEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec-CCCce-e
Q 017716          148 LRLKE-C-EH--VIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS-SHDKT-M  221 (367)
Q Consensus       148 i~i~~-a-~N--VIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~-~H~k~-~  221 (367)
                      +.|.. + +|  |.|+|+++........|||.+.   +||.|++|.|..+.|. |.++.  .+|+|++|.+. .|.-+ +
T Consensus       310 i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGidi~---~nV~I~n~~i~~gDDc-IaIks--~NI~I~n~~~~~~~g~~~I  383 (549)
T 1x0c_A          310 MDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMY---PGTILQDVFYHTDDDG-LKMYY--SNVTARNIVMWKESVAPVV  383 (549)
T ss_dssp             EEEECSCGGGEEEEEEEEEEECCCBTTCCCCBCC---TTCEEEEEEEEESSCC-EECCS--SSEEEEEEEEEECSSSCSE
T ss_pred             EEeeccCCCCCeEEEEeeEeEcCCCCCCCccccc---CCEEEEeeEEeCCCCE-EEECC--CCEEEEeeEEEcCCCCceE
Confidence            44443 4 59  9999999976444457999984   8999999999999885 78854  99999999996 45555 6


Q ss_pred             EecCCCCCCCCcceeEEEecceecCCC
Q 017716          222 LIGADPSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       222 LiG~sd~~~~d~~~~VT~hhN~f~~~~  248 (367)
                      -+|+...    .--+|+|.++.+.++.
T Consensus       384 siGs~~~----~V~NV~v~n~~i~~s~  406 (549)
T 1x0c_A          384 EFGWTPR----NTENVLFDNVDVIHQA  406 (549)
T ss_dssp             ECCBSCC----CEEEEEEEEEEEEECC
T ss_pred             EECCCCC----cEEEEEEEeeEEECcc
Confidence            6787421    1237888887775543

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=96.87  E-value=0.0053  Score=63.80  Aligned_cols=102  Identities=11%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             eeeccEEEeeeEEeCCCCCCCCceEecCCC-ce--EEEEceeee----cCCCCceEeecCCceEEEeCceecCCCceeEe
Q 017716          151 KECEHVIICNLEFEGGKGPDVDAIQIKPKS-KH--IWIDRCSLR----DYDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (367)
Q Consensus       151 ~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s-~n--VWIDHcsfs----~~~Dglidi~~~s~~VTIS~n~f~~H~k~~Li  223 (367)
                      .+++||.|++|+++....+   .|.|...+ ++  |.||++...    +..|| ||+.   ++|+|++|.|...+-+.-+
T Consensus       290 ~~c~nV~I~Giti~Nsp~w---~i~i~~~~~~ni~V~I~n~~i~~~~~~NTDG-idi~---~nV~I~n~~i~~gDDcIaI  362 (549)
T 1x0c_A          290 NSSQTFVLNGVTVSAPPFN---SMDWSGNSLDLITCRVDDYKQVGAFYGQTDG-LEMY---PGTILQDVFYHTDDDGLKM  362 (549)
T ss_dssp             SSCEEEEEESCEEECCSSC---SEEEECSCGGGEEEEEEEEEEECCCBTTCCC-CBCC---TTCEEEEEEEEESSCCEEC
T ss_pred             CCceEEEEECcEEECCCce---eEEeeccCCCCCeEEEEeeEeEcCCCCCCCc-cccc---CCEEEEeeEEeCCCCEEEE
Confidence            7899999999999986532   35543234 58  999999874    35888 8884   9999999999987777777


Q ss_pred             cCCCCCCCCcceeEEEecceecCCCCCCCccccC-------eeEEEcceEECc
Q 017716          224 GADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYA-------KVHLYNNYTRNW  269 (367)
Q Consensus       224 G~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G-------~~Hv~NN~~~n~  269 (367)
                      +++         +|++.++.+... ...+++..|       .+.+.|..+.+.
T Consensus       363 ks~---------NI~I~n~~~~~~-~g~~~IsiGs~~~~V~NV~v~n~~i~~s  405 (549)
T 1x0c_A          363 YYS---------NVTARNIVMWKE-SVAPVVEFGWTPRNTENVLFDNVDVIHQ  405 (549)
T ss_dssp             CSS---------SEEEEEEEEEEC-SSSCSEECCBSCCCEEEEEEEEEEEEEC
T ss_pred             CCC---------CEEEEeeEEEcC-CCCceEEECCCCCcEEEEEEEeeEEECc
Confidence            761         577777766321 122323322       367777776553

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=96.86  E-value=0.036  Score=54.58  Aligned_cols=146  Identities=19%  Similarity=0.132  Sum_probs=88.3

Q ss_pred             CCceEecCCCceEEEEceeeecCCC---------------CceEeecCCceEEEeCceecCC-----CceeEecCC----
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDYDD---------------GLIDITRESTDITVSRCHFSSH-----DKTMLIGAD----  226 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~~D---------------glidi~~~s~~VTIS~n~f~~H-----~k~~LiG~s----  226 (367)
                      +.+|.|. +++||+|.+..|....|               -.|.+ .++++|-|-.|.|+..     ....++|..    
T Consensus        95 g~gl~i~-~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i-~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~  172 (355)
T 1pcl_A           95 NGSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQH  172 (355)
T ss_pred             cCEEEEe-cCCeEEEeeeEEEcCcccccccccccCccccCceEEe-cCCCcEEEEeeEEeccccCccccccccCcccccc
Confidence            3467886 78999999999985321               13566 4677777777777631     222344432    


Q ss_pred             CCC--CCCcceeEEEecceecCCCCCCCccc---------cC--eeEEEcceEECcccceeeecCCceEEEEceeEecCC
Q 017716          227 PSH--VADRCIRVTIHHCFFDGTRQRHPRVR---------YA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       227 d~~--~~d~~~~VT~hhN~f~~~~~R~Pr~r---------~G--~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~  293 (367)
                      |..  .....-.||+-+|+|.++..= =++.         .|  ++.+.+|+|.+....+-..+. .++.+.||||.+..
T Consensus       173 Dgl~Di~~~s~~VTiS~n~f~~h~k~-~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~-G~~Hv~NN~~~~~~  250 (355)
T 1pcl_A          173 DGALDIKKGSDYVTISYSRFELHDKT-ILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF-GSIHAYNNVYLGDV  250 (355)
T ss_pred             ccceeeecCCCcEEEEeeEEcCCCce-EEeCCCCCCcccccCcceEEEECcEEeCCcccCCceec-ceEEEEcceEEccc
Confidence            111  111123799999999875431 1111         02  588999999887655444443 35888999998653


Q ss_pred             cceee--eeeccccCCcccCCCcEEEecCCeeecc
Q 017716          294 KKMAF--KYLTEKASDKEEARTDCIRSEGDLSSLK  326 (367)
Q Consensus       294 ~~~v~--~~~~~~~~~~~~~~~g~~~~~gn~f~ng  326 (367)
                      ...+.  .|-      ......+.+.+++|.|.++
T Consensus       251 ~~~~~~~~ya------~g~~~~~~i~~e~N~F~~~  279 (355)
T 1pcl_A          251 KHSVYPYLYS------FGLGTSGSILSESNSFTLS  279 (355)
T ss_pred             CCCccccceE------ecCCCCcEEEEEccEEECC
Confidence            32111  110      1123466789999999987

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=96.85  E-value=0.021  Score=55.61  Aligned_cols=136  Identities=15%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             CCcEEEe-----eeccEEEeeeEEeCCC----C---CCCCc-eEecCCCceEEEEceeeecCCCCceEeecC------Cc
Q 017716          145 GKGLRLK-----ECEHVIICNLEFEGGK----G---PDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRE------ST  205 (367)
Q Consensus       145 G~gi~i~-----~a~NVIIRnL~i~~g~----~---~d~Da-I~i~~~s~nVWIDHcsfs~~~Dglidi~~~------s~  205 (367)
                      +.+|.|.     .++||+|.|..|..+.    .   .-.|+ |.+..++.+|=|-+|.|.+...++|--..+      ..
T Consensus       113 ~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~  192 (330)
T 2qy1_A          113 ADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAA  192 (330)
T ss_dssp             CCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGC
T ss_pred             CcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCc
Confidence            4568887     5999999999997543    1   11243 566557899999999998754444322111      25


Q ss_pred             eEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECcccceeeec---CCc
Q 017716          206 DITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVCAS---VDS  280 (367)
Q Consensus       206 ~VTIS~n~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~yai~~~---~~a  280 (367)
                      .||+-+|+|.+..- .=++.         .-.+-+-+|+|.+.....-..+. +++-+.||||.+... .+..+   ...
T Consensus       193 ~vT~h~N~f~~~~~R~Pr~r---------~G~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~g  262 (330)
T 2qy1_A          193 RTTYHHNRFENVESRVPLQR---------FGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKN-PVTSRDSSEIG  262 (330)
T ss_dssp             EEEEESCEEEEEEECTTEEE---------SSEEEEESCEEEEECSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSBC
T ss_pred             eEEEECcEEcCCCCCCCcee---------cceEEEEeeEEEcccceEeccCCCcEEEEEccEEECCCC-ceeeccCCCce
Confidence            89999999964321 11111         11466788999887655544443 578999999987532 23222   224


Q ss_pred             eEEEEceeEec
Q 017716          281 QIYSQCNIYEA  291 (367)
Q Consensus       281 ~i~~e~N~F~~  291 (367)
                      ....++| |..
T Consensus       263 ~~~~~~n-~~~  272 (330)
T 2qy1_A          263 YWDLINN-YVG  272 (330)
T ss_dssp             EEEEESC-EEC
T ss_pred             eEEEeCC-ccc
Confidence            5667888 554

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=96.83  E-value=0.016  Score=56.18  Aligned_cols=112  Identities=10%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEee------cCCceEEEeCceecCC-C
Q 017716          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT------RESTDITVSRCHFSSH-D  218 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~------~~s~~VTIS~n~f~~H-~  218 (367)
                      .||.+..+++++|++=++...   ..|||.+..++++++|.+|.+....|+.+-+.      ..+.+++|++|.+.+. .
T Consensus       173 dGI~~~~s~~~~i~~N~~~~~---~~~GI~~~~~s~~v~I~nN~i~~~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n~~  249 (377)
T 2pyg_A          173 DGFVADYLVDSVFENNVAYAN---DRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAR  249 (377)
T ss_dssp             CSEEEESEEEEEEESCEEESC---SSCSEEEETTCEEEEEESCEEESCSSCSEEEECCSSCCCCCEEEEEESCEEESCSS
T ss_pred             CceeEeccCCcEEECcEEEcc---ccCcEEEEeccCCeEEECCEEECccCceEEEeccccCCCCCccEEEECCEEEcCcc
Confidence            467777777777776544332   25889876348899999999998877755431      3577889999887642 3


Q ss_pred             ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEEC
Q 017716          219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRN  268 (367)
Q Consensus       219 k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n  268 (367)
                      .+.++-..        -.+++.+|.+.++....=++.. -.+.+.||.+.+
T Consensus       250 ~Gi~~~~~--------~~v~i~~N~i~~~~~~GI~i~g~~~~~i~~N~i~~  292 (377)
T 2pyg_A          250 EGVLLKMT--------SDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHD  292 (377)
T ss_dssp             CSEEEEEE--------EEEEEESCEEESCSSCSEEEEEEEEEEEESCEEES
T ss_pred             CceEeccc--------cCeEEECCEEECCCCceEEEecCCCcEEECcEEEC
Confidence            33333211        2577777777665433222321 235677776664

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=96.75  E-value=0.035  Score=54.88  Aligned_cols=148  Identities=18%  Similarity=0.195  Sum_probs=87.9

Q ss_pred             CCceEe---cCCCceEEEEceeeecC----------------CCCceEeecCCceEEEeCceecCC---C--ceeEecCC
Q 017716          171 VDAIQI---KPKSKHIWIDRCSLRDY----------------DDGLIDITRESTDITVSRCHFSSH---D--KTMLIGAD  226 (367)
Q Consensus       171 ~DaI~i---~~~s~nVWIDHcsfs~~----------------~Dglidi~~~s~~VTIS~n~f~~H---~--k~~LiG~s  226 (367)
                      +-+|.|   . +++||+|-+..|...                .| .|.+..++++|=|-.|.|+..   +  ...++|..
T Consensus       102 g~gl~i~~~~-~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~D-aI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~  179 (361)
T 1pe9_A          102 NGSLIIDGTD-GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWD-AMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGET  179 (361)
T ss_dssp             SSEEEEEGGG-TCEEEEEESCEEECCCCSSCEEETTTEEECCCC-SEEEETTCEEEEEESCEEECTTSCGGGCCEETTEE
T ss_pred             cCEEEEecCC-CCceEEEeCeEEEcCcccccccccccCcccCCc-eEEeecCCceEEEEccEeecccccccccccccCcc
Confidence            356778   5 789999999999853                23 366643388888888888742   1  12233321


Q ss_pred             ----CCC--CCCcceeEEEecceecCCCCCCCccc---------cC--eeEEEcceEECcccceeeecCCceEEEEceeE
Q 017716          227 ----PSH--VADRCIRVTIHHCFFDGTRQRHPRVR---------YA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY  289 (367)
Q Consensus       227 ----d~~--~~d~~~~VT~hhN~f~~~~~R~Pr~r---------~G--~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F  289 (367)
                          |..  .....-.||+-+|+|.++.. .=++.         .|  ++.+.+|+|.+.....-..+. .++.+.||||
T Consensus       180 ~~~~DgllDi~~~s~~VTiS~n~f~~h~k-~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~R~-G~~Hv~NN~~  257 (361)
T 1pe9_A          180 YVQHDGALDIKRGSDYVTISNSLIDQHDK-TMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRY-GSIHSFNNVF  257 (361)
T ss_dssp             CCCCCCSEEECTTCEEEEEESCEEEEEEE-CEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEESS-CEEEEESCEE
T ss_pred             eeeccceeeeecCCCcEEEEeeEEcCCCc-eeEecCCCCCcccccCcceEEEECeEEcCccccCccccc-ceEEEEcceE
Confidence                111  01112489999999975431 11111         12  588999999876544434443 3688899999


Q ss_pred             ecCCcceeeeeeccccCCcccCCCcEEEecCCeeecc
Q 017716          290 EAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLK  326 (367)
Q Consensus       290 ~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng  326 (367)
                      .+.....++.+..    -......+.+.+++|.|.++
T Consensus       258 ~~~~~~~~~~~~y----a~g~~~~~~i~~E~N~F~~~  290 (361)
T 1pe9_A          258 KGDAKDPVYRYQY----SFGIGTSGSVLSEGNSFTIA  290 (361)
T ss_dssp             EEETTCSSSCCCC----SEEECTTCEEEEESCEEEEE
T ss_pred             ecccCCCccccce----EecCCCCcEEEEECCEEECC
Confidence            8643211100000    01123466889999999987

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=96.52  E-value=0.034  Score=55.97  Aligned_cols=145  Identities=19%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             CCceEecCCCceEEEEceeeecCC--------------------CCceEeecCCceEEEeCceecCC---Cc--eeEecC
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDYD--------------------DGLIDITRESTDITVSRCHFSSH---DK--TMLIGA  225 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~~--------------------Dglidi~~~s~~VTIS~n~f~~H---~k--~~LiG~  225 (367)
                      +.+|.|. +++||+|.+..|....                    |+ |.+ .++++|=|-.|.|+..   ++  ..++|.
T Consensus       147 g~gl~i~-~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~Da-I~i-~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr  223 (416)
T 1vbl_A          147 GGGFLIK-NVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDS-ISI-EGSSHIWIDHNTFTDGDHPDRSLGTYFGR  223 (416)
T ss_dssp             SCEEEEE-SCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCS-EEE-ESCEEEEEESCEEECTTCCGGGSCEETTE
T ss_pred             cCEEEee-cCceEEEeCeEEEcCccccccccccccccccccCCCce-EEe-cCCceEEEEccEEecCCCcccccccccCc
Confidence            3578887 7899999999997542                    33 666 5688888888888742   11  123332


Q ss_pred             C----CCC--CCCcceeEEEecceecCCCCCCCccc--------cC--eeEEEcceEECcccceeeecCCceEEEEceeE
Q 017716          226 D----PSH--VADRCIRVTIHHCFFDGTRQRHPRVR--------YA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY  289 (367)
Q Consensus       226 s----d~~--~~d~~~~VT~hhN~f~~~~~R~Pr~r--------~G--~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F  289 (367)
                      .    |..  .....-.||+-+|+|.+... .=++.        .|  ++.+.+|+|.+....+-..+. .++.+.||||
T Consensus       224 ~~~~~DGl~Di~~~s~~VTISnn~f~~h~k-~~LiG~sd~~~~d~g~~~VT~hhN~f~~~~~R~Pr~R~-G~~Hv~NN~~  301 (416)
T 1vbl_A          224 PFQQHDGALDIKNSSDFITISYNVFTNHDK-VTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRF-GQVHIYNNYY  301 (416)
T ss_dssp             ECCCCCCSEEEESSCEEEEEESCEEEEEEE-CCEECSCTTCGGGTTCCCEEEESCEEEEEEECSSEESS-CEEEEESCEE
T ss_pred             ceeecccceeeecCCCcEEEEeeEEcCCCc-eeEeCCCCCCcccCCceEEEEECcEecCCccCCccccc-ceEEEEcceE
Confidence            1    111  01112389999999975421 11111        12  589999999876554444443 4688899999


Q ss_pred             ecCCcce-eeeeeccccCCcccCCCcEEEecCCeeecc
Q 017716          290 EAGQKKM-AFKYLTEKASDKEEARTDCIRSEGDLSSLK  326 (367)
Q Consensus       290 ~~g~~~~-v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng  326 (367)
                      .+..... -+.|      -......+.+.+++|.|.++
T Consensus       302 ~n~~~~~~~~~y------a~g~~~~~~i~~E~N~F~~~  333 (416)
T 1vbl_A          302 EFSNLADYDFQY------AWGVGVFSQIYAQNNYFSFD  333 (416)
T ss_dssp             EECTTSSSCCCC------SEEEETTCEEEEESCEEEES
T ss_pred             ECCCCCccccee------EeccCCCcEEEEECCEEECC
Confidence            8653210 0001      01123466889999999986

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=96.41  E-value=0.03  Score=56.04  Aligned_cols=137  Identities=15%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCCC-------------CCc-eEecCCCceEEEEceeeecCCCCceEeecCC------
Q 017716          145 GKGLRLKECEHVIICNLEFEGGKGPD-------------VDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRES------  204 (367)
Q Consensus       145 G~gi~i~~a~NVIIRnL~i~~g~~~d-------------~Da-I~i~~~s~nVWIDHcsfs~~~Dglidi~~~s------  204 (367)
                      +.+|.|.+++||+|.|..|..+...+             .|+ |.+..++++|=|-.|.|.+...++|--..++      
T Consensus       183 ~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g  262 (399)
T 2o04_A          183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTT
T ss_pred             CCeEEecCCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccC
Confidence            45789999999999999999764211             243 4565578999999999987554444322221      


Q ss_pred             -ceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCC-------Cccc-cCeeEEEcceEECcccc--
Q 017716          205 -TDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRH-------PRVR-YAKVHLYNNYTRNWGIY--  272 (367)
Q Consensus       205 -~~VTIS~n~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~-------Pr~r-~G~~Hv~NN~~~n~~~y--  272 (367)
                       -.||+-+|+|.+..- .=.+.         .-.+-+.+|+|.+.....       =..+ .+++-+.||||.+....  
T Consensus       263 ~~~vT~h~N~f~~~~~R~Pr~R---------~G~~Hv~NN~~~n~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~  333 (399)
T 2o04_A          263 KLKITLHHNRYKNIVQAAPRVR---------FGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAA  333 (399)
T ss_dssp             CCCEEEESCEEEEEEECTTEES---------SCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTTCCSG
T ss_pred             ceeEEEECcEecCCcccCCCcc---------cceEEEEcceEECCCCCCccceeeEeccCCCcEEEEEceEEECCCCCcc
Confidence             289999999964321 11111         114667789997654311       0111 25789999999975211  


Q ss_pred             -eeeec-CCceEEEEceeEe
Q 017716          273 -AVCAS-VDSQIYSQCNIYE  290 (367)
Q Consensus       273 -ai~~~-~~a~i~~e~N~F~  290 (367)
                       .+..- .+..+...+|+|.
T Consensus       334 ~~~~~~s~~~~~~~~gn~~~  353 (399)
T 2o04_A          334 KTISVFSGGTALYDSGTLLN  353 (399)
T ss_dssp             GGEEECTTCCBCEEESCEET
T ss_pred             ceeeeccCCceEEEeCceec
Confidence             11111 3445566788875

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=96.39  E-value=0.019  Score=56.63  Aligned_cols=188  Identities=12%  Similarity=0.050  Sum_probs=111.3

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCC---------CCCCc-eEecCCCceEEEEceeeecCCCCceEeecCC---ceEEEeC
Q 017716          145 GKGLRLKECEHVIICNLEFEGGKG---------PDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRES---TDITVSR  211 (367)
Q Consensus       145 G~gi~i~~a~NVIIRnL~i~~g~~---------~d~Da-I~i~~~s~nVWIDHcsfs~~~Dglidi~~~s---~~VTIS~  211 (367)
                      +..|.|.+++||+|.|..|..+..         ...|+ |.+..++.+|=|.+|.|.+....+|.-..++   ..||+-+
T Consensus       130 ~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~g~~vT~hh  209 (353)
T 1air_A          130 GDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHH  209 (353)
T ss_dssp             CCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSTTCCCCEEEEES
T ss_pred             CCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEeeEEcCCCceeEECCCcCCCCceEEEEc
Confidence            356888889999999999986531         01244 4554478999999999986544443321111   4799999


Q ss_pred             ceecCCC-ceeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECcccceeeec----CCceEEEE
Q 017716          212 CHFSSHD-KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVCAS----VDSQIYSQ  285 (367)
Q Consensus       212 n~f~~H~-k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~yai~~~----~~a~i~~e  285 (367)
                      |+|.++. +.-++..         -.+-+.+|+|.+...+.-..+. +++-+.||||.+... .+..+    ........
T Consensus       210 N~f~~~~~R~Pr~r~---------G~~Hv~NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~~g~~~~~  279 (353)
T 1air_A          210 NYYNDVNARLPLQRG---------GLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAIN-PVTSRYDGKNFGTWVLK  279 (353)
T ss_dssp             CEEEEEEECSCEEES---------SEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSSCCEEEEE
T ss_pred             eEEcCCcCCCCCCcC---------ceEEEEccEEECCCCceeccCCCcEEEEEceEEECCCC-ceEecCCCCCCceeEec
Confidence            9996432 1112211         1466788999876665433442 678999999987532 23222    12344455


Q ss_pred             ceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeeccccccccccCCCCcccCCCCCCcccc------eeecccCC
Q 017716          286 CNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT------LLQRCTGW  359 (367)
Q Consensus       286 ~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~~------~~~~~ag~  359 (367)
                      +|.|.....   +           ....+.|.+.++.|++++....     ..+...++|.|+...      .|+.+||+
T Consensus       280 ~n~~~~~~d---~-----------~~~~~~~~s~~~~~~~~~~~~~-----~g~~~~~~Y~y~~~~a~~V~~~V~~~AGa  340 (353)
T 1air_A          280 GNNITKPAD---F-----------STYSITWTADTKPYVNADSWTS-----TGTFPTVAYNYSPVSAQCVKDKLPGYAGV  340 (353)
T ss_dssp             SCSCCSTHH---H-----------HHHTEECCCCSSCCEECTTCCC-----CSCCCCCCSCCCCCCHHHHHHHGGGTSSS
T ss_pred             ccccccccc---c-----------ceecccccCCCccccccccccc-----cCCccccceEEecCCHHHhhhhhhhccCC
Confidence            665542110   0           0124556677777777654211     111123445555555      88999997


Q ss_pred             cc
Q 017716          360 QD  361 (367)
Q Consensus       360 q~  361 (367)
                      ..
T Consensus       341 g~  342 (353)
T 1air_A          341 GK  342 (353)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=96.31  E-value=0.038  Score=55.42  Aligned_cols=46  Identities=9%  Similarity=0.101  Sum_probs=23.1

Q ss_pred             ceEecCCCceEEEEceee-ecCCCCceEeecCCceEEEeCceecCCCcee
Q 017716          173 AIQIKPKSKHIWIDRCSL-RDYDDGLIDITRESTDITVSRCHFSSHDKTM  221 (367)
Q Consensus       173 aI~i~~~s~nVWIDHcsf-s~~~Dglidi~~~s~~VTIS~n~f~~H~k~~  221 (367)
                      +|.++ .+++.-|.+|.+ .+..|+ |-+ ..+++..|++|.|++...++
T Consensus       233 gIyl~-ns~~~~I~~N~i~~~~R~g-Ih~-m~s~~~~i~~N~f~~~~~Gi  279 (410)
T 2inu_A          233 TLLAE-NHEGLLVTGNNLFPRGRSL-IEF-TGCNRCSVTSNRLQGFYPGM  279 (410)
T ss_dssp             EEEEE-SEESCEEESCEECSCSSEE-EEE-ESCBSCEEESCEEEESSSCS
T ss_pred             EEEEE-eCCCCEEECCCcccCcceE-EEE-EccCCCEEECCEEecceeEE
Confidence            35554 455555555544 334444 223 23555566666666544443

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}

Probab=96.14  E-value=0.034  Score=56.03  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             hHHHhhhcC-----CCeEEEEEeceEEEecceeEec---cCcceeeeccc---eEEe-------------------C---
Q 017716           99 SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQR---VKLT-------------------G---  145 (367)
Q Consensus        99 SLr~Ai~~~-----~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~g---i~I~-------------------G---  145 (367)
                      |+++||++.     ..+++|+-..|+++  +.|.|.   +++||+|.|.+   ++|.                   |   
T Consensus        91 TIqeAVdaap~~~~~~r~vI~Ik~GvY~--E~V~Ip~~K~~ItL~G~G~~~t~Iti~~~~~~~~~~~d~~~~~n~~G~~~  168 (422)
T 3grh_A           91 TIQAAVDAAIIKRTNKRQYIAVMPGEYQ--GTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYM  168 (422)
T ss_dssp             SHHHHHHHHHTTCCSSCEEEEECSEEEE--SCEEECCCSSCEEEEECSSSGGGEEEEECCCTTSCHHHHHHHHCGGGSSC
T ss_pred             CHHHHHHhchhcCCCccEEEEEeCCeEe--eeEEecCCCCcEEEEeccCCCceEEEeecccccccccccccccccccccc
Confidence            799998752     33566666789985  568884   78999998753   4442                   0   


Q ss_pred             -----------------C--------cEEEeeeccEEEeeeEEeCCCC-----CC--CCceEecCCCceEEEEceeeecC
Q 017716          146 -----------------K--------GLRLKECEHVIICNLEFEGGKG-----PD--VDAIQIKPKSKHIWIDRCSLRDY  193 (367)
Q Consensus       146 -----------------~--------gi~i~~a~NVIIRnL~i~~g~~-----~d--~DaI~i~~~s~nVWIDHcsfs~~  193 (367)
                                       .        .|.+ .+++++++||+|+...+     ..  .-|+.+  .+.++.+.+|.|.-.
T Consensus       169 ~G~~aw~tf~~~~~~~sat~gT~~SAT~~V-~g~~F~a~niTf~Ntag~~~~~~~~QAVAL~v--~gDr~~fy~C~f~G~  245 (422)
T 3grh_A          169 PGKPAWYMYDSCQSKRSDSIGVLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT--DGDQVQINNVNILGR  245 (422)
T ss_dssp             TTSTTHHHHHHHHTCCSSSCCGGGCCSEEE-CCTTCEEEEEEEEETTGGGSCSSCCCCCSEEE--CCSSEEEEEEEEECS
T ss_pred             cCccccccccccccccccceeccceEEEEE-ECCCEEEEeeEEEeCCCCCCCCCCCceEEEEe--cCCcEEEEeeEEEee
Confidence                             0        1233 37999999999997532     11  235555  478899999999988


Q ss_pred             CCCceEee---------cCCceEEEeCceec
Q 017716          194 DDGLIDIT---------RESTDITVSRCHFS  215 (367)
Q Consensus       194 ~Dglidi~---------~~s~~VTIS~n~f~  215 (367)
                      .|=|+--.         .....--+.+|+|.
T Consensus       246 QDTLy~~~~~~~~~~~~d~~gRqyy~~CyIe  276 (422)
T 3grh_A          246 QNTFFVTNSGVQNRLETNRQPRTLVTNSYIE  276 (422)
T ss_dssp             TTCEEECCCCTTCSCCSSCCCEEEEESCEEE
T ss_pred             cceeeeccccccccccccccccEEEEecEEe
Confidence            88766321         12345666777776

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=95.96  E-value=0.11  Score=51.79  Aligned_cols=117  Identities=12%  Similarity=0.093  Sum_probs=61.2

Q ss_pred             CCceEecC-CCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCc-------------eeEecCCCCCCCCccee
Q 017716          171 VDAIQIKP-KSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDK-------------TMLIGADPSHVADRCIR  236 (367)
Q Consensus       171 ~DaI~i~~-~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k-------------~~LiG~sd~~~~d~~~~  236 (367)
                      .|||.+.. .+....|.+|.+.+..|.-+|+......|||.+|...+..+             ++-+|...     ...+
T Consensus       183 ~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl~~~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnGf~lgg~~-----~~~~  257 (400)
T 1ru4_A          183 ADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQ-----AVGN  257 (400)
T ss_dssp             CCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTCCCCCCSEECCCTT-----CCCC
T ss_pred             cceEEEEecccCCeEEECCEEeecCCCcEEEEecCCCEEEEeEEEECCccccccccccccCCCCEEEeccC-----CcCC
Confidence            35555431 12444556666655444446665555567888887654322             11111110     0124


Q ss_pred             EEEecceecCCCCCCCcccc--CeeEEEcceEECcccceeeecCCc----eEEEEceeEecCC
Q 017716          237 VTIHHCFFDGTRQRHPRVRY--AKVHLYNNYTRNWGIYAVCASVDS----QIYSQCNIYEAGQ  293 (367)
Q Consensus       237 VT~hhN~f~~~~~R~Pr~r~--G~~Hv~NN~~~n~~~yai~~~~~a----~i~~e~N~F~~g~  293 (367)
                      .++.+|+..++...-=....  +.+.|.||..++.. .++......    +..+++|++....
T Consensus       258 ~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~N~-~~~~~~~~~~~~~~~~~~nNi~~~~~  319 (400)
T 1ru4_A          258 HRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNG-INYGFGSNVQSGQKHYFRNNVSLSAS  319 (400)
T ss_dssp             CEEESCEEESCSSEEEECTTCSSCCEEESCEEESSS-EEEEECSCCCTTCCEEEESCEEESSC
T ss_pred             EEEEeeEEECCcCcCEeecCCCCCEEEECeEEECCc-cceEEecCCCcccceEEEccEEEccc
Confidence            56777766555433222222  45788999776654 455444332    5567888887754

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=94.94  E-value=0.13  Score=52.39  Aligned_cols=91  Identities=11%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCc-eEecCCCceEEEEceeeecCCCCceEeecC-----------CceEEEeCce
Q 017716          146 KGLRLKECEHVIICNLEFEGGKGPDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRE-----------STDITVSRCH  213 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~~~d~Da-I~i~~~s~nVWIDHcsfs~~~Dglidi~~~-----------s~~VTIS~n~  213 (367)
                      .|+.+ .++||.|+|++|..+.  +.+| +... .++||.|+.|.|.. ..| |.++.+           ..+|++++|.
T Consensus       168 DGi~i-~s~nV~I~n~~I~~gd--dgiGs~~~~-~~~NV~V~n~~~~g-g~G-IrIktg~d~IG~~~~g~v~NI~~~Ni~  241 (464)
T 1h80_A          168 NGRLH-WSRNGIIERIKQNNAL--FGYGLIQTY-GADNILFRNLHSEG-GIA-LRMETDNLLMKNYKQGGIRNIFADNIR  241 (464)
T ss_dssp             TTEEE-EEEEEEEEEEEEESCC--TTCEEEEES-EEEEEEEEEEEEES-SEE-EEEECCCHHHHHHTCCEEEEEEEEEEE
T ss_pred             CCcee-eccCEEEeceEEecCC--CeEEecccC-CEeEEEEEeeEEEC-CCE-EEEEeCCceeccCCCCcEEEEEEEeEE
Confidence            34555 5899999999999873  3456 4454 78999999999887 333 444332           5799999999


Q ss_pred             ecCCCceeEecCCCCCCCCcceeEEEecceecC
Q 017716          214 FSSHDKTMLIGADPSHVADRCIRVTIHHCFFDG  246 (367)
Q Consensus       214 f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~  246 (367)
                      |.+-..++.|+......    -+|+|-+-...+
T Consensus       242 ~~nv~~~I~I~p~~~~i----snItfeNI~~t~  270 (464)
T 1h80_A          242 CSKGLAAVMFGPHFMKN----GDVQVTNVSSVS  270 (464)
T ss_dssp             EESSSEEEEEECTTCBC----CCEEEEEEEEES
T ss_pred             EECCceeEEEeCCCceE----eEEEEEEEEEEc
Confidence            99988888888432111    256766555544

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=94.64  E-value=0.26  Score=51.67  Aligned_cols=104  Identities=12%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             eeeccEEEeeeE----EeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEe-ecCCc-eEEEeCceecCCCceeEec
Q 017716          151 KECEHVIICNLE----FEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDI-TREST-DITVSRCHFSSHDKTMLIG  224 (367)
Q Consensus       151 ~~a~NVIIRnL~----i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi-~~~s~-~VTIS~n~f~~H~k~~LiG  224 (367)
                      ..++||+|+||+    |..  ....|||        |+|.+|.|..+.|. |.+ +.++. +++++.| ...| -++-||
T Consensus       207 ~~c~NVtI~nvtfi~aI~s--spNTDGI--------V~I~nc~I~tGDDC-IAI~KSGs~~ni~~e~~-~~GH-gGISIG  273 (600)
T 2x6w_A          207 GYGSNCYVRKCRFINLVNS--SVNADHS--------TVYVNCPYSGVESC-YFSMSSSFARNIACSVQ-LHQH-DTFYRG  273 (600)
T ss_dssp             TBEEEEEEESCEEECCCCC--SSCCCEE--------EEEECSSSEEEESC-EEECCCTTHHHHEEEEE-ECSS-SEEEES
T ss_pred             CCcccEEEeCeEEcceEec--CCCCCEE--------EEEEeeEEecCCcE-EEEecCCCcCCeEEEEE-cCCC-CcEEec
Confidence            445666666666    443  2234555        66666666655444 666 55543 2444411 1122 244455


Q ss_pred             CCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECccccee
Q 017716          225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAV  274 (367)
Q Consensus       225 ~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai  274 (367)
                      +..   ...--+|++.+ .+.....|...++  .+++.|....+.. +.+
T Consensus       274 Se~---~ggV~NV~V~N-rIKt~~G~GG~V~--NItfeNI~m~nV~-~~I  316 (600)
T 2x6w_A          274 STV---NGYCRGAYVVM-HAAEAAGAGSYAY--NMQVENNIAVIYG-QFV  316 (600)
T ss_dssp             CEE---EEESEEEEEEE-CGGGCTTTCSEEE--EEEEESCEEEESS-EEE
T ss_pred             ccc---cCcEEEEEEEE-EEEeecCCCceEE--EEEEEEEEEEccc-eEE
Confidence            421   11123677776 5555444332222  2455565555554 444

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=93.04  E-value=0.99  Score=48.49  Aligned_cols=122  Identities=15%  Similarity=0.156  Sum_probs=69.0

Q ss_pred             hHHHhhhcC------------CCeEEEEEeceEEEecceeEeccCcceeeeccc-eEEe------CCcEEEee-------
Q 017716           99 SLREGCRMK------------EPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQR-VKLT------GKGLRLKE-------  152 (367)
Q Consensus        99 SLr~Ai~~~------------~P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~g-i~I~------G~gi~i~~-------  152 (367)
                      .|++|+++.            .|.+|+| ..|+..++..|.+.+++.|+|.+.. .+|+      |..| |..       
T Consensus        68 Aiq~Ai~~a~~~Gggc~~st~~~~~V~~-P~GtYlvs~tI~l~~~t~L~G~~~~~pvIka~~~F~G~~l-i~~d~y~~~G  145 (758)
T 3eqn_A           68 AIQAAINAGGRCGQGCDSTTTQPALVYF-PPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIAL-IDADPYLAGG  145 (758)
T ss_dssp             HHHHHHHTTSCSCTTCCCCSSSCEEEEE-CSSEEEESSCEECCTTEEEEECSSSCCEEEECTTCCSSCS-EESSCBCGGG
T ss_pred             HHHHHHHHhhhcccccccccccceEEEE-CCceEEEcccEEccCCeEEEecCCCCCeEecCCCCCCcce-eeccccCCCC
Confidence            488888653            2355544 6799888888999999999998642 2442      2221 110       


Q ss_pred             --------eccEEEeeeEEeCCCC-CCCCceEecCCCceEEEEceeeecC------CCCceEeecCCceEEEeCceecCC
Q 017716          153 --------CEHVIICNLEFEGGKG-PDVDAIQIKPKSKHIWIDRCSLRDY------DDGLIDITRESTDITVSRCHFSSH  217 (367)
Q Consensus       153 --------a~NVIIRnL~i~~g~~-~d~DaI~i~~~s~nVWIDHcsfs~~------~Dglidi~~~s~~VTIS~n~f~~H  217 (367)
                              .--+-||||.|..... ...-+|... .+.+..|.+|.|.-.      .+| |.+. ....+.|+.+.|..-
T Consensus       146 ~~w~~~~~~F~r~irNlviD~t~~~~~~~gIhw~-vaQatsL~Nv~i~m~~~sg~~~~G-I~~e-~GSgg~i~Dl~f~GG  222 (758)
T 3eqn_A          146 AQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQ-VSQATSLINIVFQMSTAAGNQHQG-IFME-NGSGGFLGDLVFNGG  222 (758)
T ss_dssp             CBSSCGGGCCCEEEEEEEEECTTCSSCEEEEECC-CCSSEEEEEEEEECCCSTTCCEEE-EEEC-SCCCCEEEEEEEESC
T ss_pred             ccccccccceeeeecceEEeccccCCCceEEEEE-ecCceEEEEEEEEecCCCCCccee-EEec-CCCceEEEeeEEeCC
Confidence                    0235667777764321 112234443 566677777777532      233 3442 223456666666666


Q ss_pred             CceeEecC
Q 017716          218 DKTMLIGA  225 (367)
Q Consensus       218 ~k~~LiG~  225 (367)
                      +.++.+|.
T Consensus       223 ~~G~~~gn  230 (758)
T 3eqn_A          223 NIGATFGN  230 (758)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEcCC
Confidence            66666654

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=91.22  E-value=1.1  Score=45.67  Aligned_cols=161  Identities=13%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             hHHHhhhc----CCCeEEEEEece----EEEecceeEeccCcceeeeccceEEe----CCc-EEE-ee---eccEEEeee
Q 017716           99 SLREGCRM----KEPLWIVFEVSG----TIHLRSHLSVSSYKTIDGRGQRVKLT----GKG-LRL-KE---CEHVIICNL  161 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsG----tI~l~~~l~V~snkTI~G~G~gi~I~----G~g-i~i-~~---a~NVIIRnL  161 (367)
                      .|++|+++    .++.+|+| ..|    +..+...|.+.++++|.|.+....+.    ..+ +.. .-   -.-.-++||
T Consensus        70 AIQkAIdaA~a~~GGGtVyV-PaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~~~I~GtIia~~y~s~I~~~~VeNI  148 (514)
T 2vbk_A           70 AIQNAIDAVASLPSGGELFI-PASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNI  148 (514)
T ss_dssp             HHHHHHHHHHTSTTCEEEEC-CCCSSTTCEEESSCEEECTTEEEECCSTTSEEEECTTCCSEEEEECCCSCCSCEEEESC
T ss_pred             HHHHHHHHHhhcCCCeEEEE-CCCCcceeEEECCeEEecCCeEEEEecCceEeeccccccccEEeccCCccccccCceEE
Confidence            47877763    25666655 568    77777888889999999985432221    111 111 00   012336788


Q ss_pred             EEeCCCCCCCCceEecC-------------CCceEEEEceee-----------------ecCCCCceEeecCCceEEEeC
Q 017716          162 EFEGGKGPDVDAIQIKP-------------KSKHIWIDRCSL-----------------RDYDDGLIDITRESTDITVSR  211 (367)
Q Consensus       162 ~i~~g~~~d~DaI~i~~-------------~s~nVWIDHcsf-----------------s~~~Dglidi~~~s~~VTIS~  211 (367)
                      +|.+...  -||+...-             ..++|-|..|+.                 -.+.+ .|++.....+|.|++
T Consensus       149 aITG~GT--IDG~g~n~t~e~~~~Rq~~~~~fdnV~Vn~Vt~~v~~Sg~WTIhPi~Cqnvt~r~-gL~f~eSCrNV~Isn  225 (514)
T 2vbk_A          149 RVTGNNT--CNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRV-GLHFLGQCVSVSVSS  225 (514)
T ss_dssp             EEECCSS--SEEEEESCCTTCSSCCCEESEEEESCEEEEEEEEEEEESEEEEEEESCEEEEEEE-EEEEESCCEEEEEES
T ss_pred             EEECCCe--EeCCCCCccccceeeeccceEEeeeEEEEeEEEeEeccCcEEEeEeccCceeccc-CccccCCCCeEEEec
Confidence            8876432  12211100             013344444432                 12222 467766788999999


Q ss_pred             ceecCCCc-------------------------eeEecCCCCCCCCccee-EEEecceecCCCCCCCccccCeeEEEcce
Q 017716          212 CHFSSHDK-------------------------TMLIGADPSHVADRCIR-VTIHHCFFDGTRQRHPRVRYAKVHLYNNY  265 (367)
Q Consensus       212 n~f~~H~k-------------------------~~LiG~sd~~~~d~~~~-VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~  265 (367)
                      |+|+-.+.                         +..+|+....  -+-.+ |++|.|+|.++.|-.-.+-.....+.-|+
T Consensus       226 C~FsVGDdciaiksGk~~~~~~~~~~se~~~hgav~igSE~m~--~Gvk~~v~v~~Clf~~td~~~~~~~~~~~~~~~~~  303 (514)
T 2vbk_A          226 CHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMC--IGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENV  303 (514)
T ss_dssp             CEEECTTSCCTTCEEEEEECBCCTTTSSCBCCEEEEEESSEEE--ESCSEEEEESCCEEEEEESEEEEEESSEEEEESCC
T ss_pred             cEEecCcceeeeecCceecccccCCcchhcccccEEECchhhc--ccccccEEEEeeeccCCccccccccCCcceEEEec
Confidence            99983221                         2334432110  01125 89999999999886433332333444444

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=84.06  E-value=3.6  Score=43.17  Aligned_cols=62  Identities=16%  Similarity=0.400  Sum_probs=46.2

Q ss_pred             EEeeeccEEEeeeEEeCC-CCCCCCceEe---cCCCceEEEEcee----eec--CCCCceEeecCCceEEEeCceecCCC
Q 017716          149 RLKECEHVIICNLEFEGG-KGPDVDAIQI---KPKSKHIWIDRCS----LRD--YDDGLIDITRESTDITVSRCHFSSHD  218 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g-~~~d~DaI~i---~~~s~nVWIDHcs----fs~--~~Dglidi~~~s~~VTIS~n~f~~H~  218 (367)
                      ++.+++   |++|+|+.. ..   -.|.+   . .++||.|++|+    +..  ..||.         |+|++|.|..-+
T Consensus       181 ~f~~c~---I~GITi~NSDP~---w~I~iG~~~-~c~NVtI~nvtfi~aI~sspNTDGI---------V~I~nc~I~tGD  244 (600)
T 2x6w_A          181 RSYNCS---VTGITFQNGDVT---WAITLGWNG-YGSNCYVRKCRFINLVNSSVNADHS---------TVYVNCPYSGVE  244 (600)
T ss_dssp             SEEEEE---EESCEEESCCCS---CSEEECBTT-BEEEEEEESCEEECCCCCSSCCCEE---------EEEECSSSEEEE
T ss_pred             EEeeeE---EeCeEEECCCCc---cEEEeCCCC-CcccEEEeCeEEcceEecCCCCCEE---------EEEEeeEEecCC
Confidence            344454   999999986 43   35677   6 78999999999    443  46773         999999999877


Q ss_pred             ceeEe-cCC
Q 017716          219 KTMLI-GAD  226 (367)
Q Consensus       219 k~~Li-G~s  226 (367)
                      -+.-| .+.
T Consensus       245 DCIAI~KSG  253 (600)
T 2x6w_A          245 SCYFSMSSS  253 (600)
T ss_dssp             SCEEECCCT
T ss_pred             cEEEEecCC
Confidence            77777 543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1pxza_	346	b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark	1e-84
d1qcxa_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	1e-60
d1idka_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	6e-57
d1pe9a_	361	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	1e-53
d1bn8a_	399	b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta	1e-48
d1o88a_	353	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	2e-45

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  258 bits (660), Expect = 1e-84
 Identities = 97/309 (31%), Positives = 142/309 (45%), Gaps = 26/309 (8%)

Query: 65  RALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTI 120
             LA  A GFG   +GG  G  Y VT+  D+     PG+LR G   ++ LWI+F  +  I
Sbjct: 19  MKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNI 78

Query: 121 HLRSHLSVSSYKTIDGRGQRVKLTGKG--LRLKECEHVIICNLEFEGGKGPDVDAIQIKP 178
            L+  L V+ +KTIDGRG  V L   G  L +++  HVI+ +L   G     +  + +  
Sbjct: 79  KLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSE 138

Query: 179 K------------------SKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT 220
                                + WID  SL D  DGLID+T  ST IT+S  HF +H K 
Sbjct: 139 SIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKV 198

Query: 221 MLIGADPSHVADRCIRVTIHHC-FFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD 279
           ML+G D ++  D+ ++VT+    F     QR PR RY  VH+ NN    W IYA+  S +
Sbjct: 199 MLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSN 258

Query: 280 SQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTD-CIRSEGDLSSLKLKAGLMAEAGEH 338
             I S+ N + A  +    +       +   A  +   RS  D            +  E 
Sbjct: 259 PTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEET 318

Query: 339 NMFHPSEHY 347
           N+++ +E +
Sbjct: 319 NIYNSNEAF 327

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

 Score =  197 bits (501), Expect = 1e-60
 Identities = 53/292 (18%), Positives = 93/292 (31%), Gaps = 63/292 (21%)

Query: 66  ALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFE---------- 115
            + G AEGF     GG      + TT  +     L       EP  I+ +          
Sbjct: 2   GVVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIILDQTFDFTGTEG 56

Query: 116 -------------------------------------VSGTIHLRSHLSVSSYKTIDGRG 138
                                                V+        ++V+S K+I G+G
Sbjct: 57  TETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQG 116

Query: 139 QRVKLTGKGLRL-KECEHVIICNLEFEGGKGPDV---DAIQIKPKSKHIWIDRCSL-RDY 193
            +  + GKGLR+    ++VII N+         V   DAI +   S  +WID  +  R  
Sbjct: 117 TKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD-SDLVWIDHVTTARIG 175

Query: 194 DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTRQ 249
              ++  T     +T+S                  +    +      VT+   +F     
Sbjct: 176 RQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSG 235

Query: 250 RHPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFKY 300
           R P+V+    +H  NN   N+  +A        + ++ N+++     +    
Sbjct: 236 RMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPI 287

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

 Score =  187 bits (476), Expect = 6e-57
 Identities = 46/281 (16%), Positives = 86/281 (30%), Gaps = 63/281 (22%)

Query: 67  LAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFE----------- 115
           ++G AEGF +   GG      +  T+ +     L       E   IV             
Sbjct: 3   VSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVLTKTFDFTDSEGT 57

Query: 116 ------------------------------------VSGTIHLRSHLSVSSYKTIDGRGQ 139
                                               V         ++V+S K++ G G 
Sbjct: 58  TTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGS 117

Query: 140 RVKLTGKGLRL-KECEHVIICNLEFEGGK---GPDVDAIQIKPKSKHIWIDRCSLRD-YD 194
              + GKGLR+    E++II N+             DAI +      +WID  +      
Sbjct: 118 SGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGR 176

Query: 195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTRQR 250
              +  T     ++++  +               +    +      VT+   +   T  R
Sbjct: 177 QHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGR 236

Query: 251 HPRVRY-AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYE 290
            P+V+    +H  NNY  +   +A        + ++ N+++
Sbjct: 237 SPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQ 277

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

 Score =  179 bits (454), Expect = 1e-53
 Identities = 64/316 (20%), Positives = 108/316 (34%), Gaps = 73/316 (23%)

Query: 67  LAGQAEGFGRLAIG------GLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTI 120
            +    G+                 +Y VT +++                 I+  + GTI
Sbjct: 10  ESAPTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKIIQ-IKGTI 63

Query: 121 HL--------------RSHLSVSSYKTIDGRGQRVKLTGKGLRL---KECEHVIICNLEF 163
            +              RS +++ +  T+ G G   K     L +       +VII N+  
Sbjct: 64  DISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYI 123

Query: 164 EG------------GKGPDVDAIQIKPKSKHIWIDRCSLRDYD----------------- 194
           +             G   + DA+ I   + H+WID  ++ D +                 
Sbjct: 124 QTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQH 183

Query: 195 DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA--DRCIRVTIHHCFFDGTRQRHP 252
           DG +DI R S  +T+S      HDKTMLIG   S+ +     + VT+ +  F+   +R P
Sbjct: 184 DGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAP 243

Query: 253 RVRYAKVHLYNNYTRNWG-------IYAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKA 305
           RVRY  +H +NN  +           Y+        + S+ N +              KA
Sbjct: 244 RVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA------NLSASKA 297

Query: 306 SDKEEARTDCIRSEGD 321
               +     I S+  
Sbjct: 298 CKVVKKFNGSIFSDNG 313

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

 Score =  166 bits (421), Expect = 1e-48
 Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 43/211 (20%)

Query: 123 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK--------------- 167
           R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                  
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178

Query: 168 -GPDVDAIQIKPKSKHIWIDRCSLR-----------------DYDDGLIDITRESTDITV 209
                D I I     HIWID C+                    + DG  D +  +  IT+
Sbjct: 179 WNSQYDNITING-GTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237

Query: 210 SRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRN 268
           S  ++  HDK+ + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY   
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297

Query: 269 WG-------IYAVCASVDSQIYSQCNIYEAG 292
                     YA      S+IY+Q N+ +  
Sbjct: 298 STSSSSYPFSYAWGIGKSSKIYAQNNVIDVP 328

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

 Score =  157 bits (397), Expect = 2e-45
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 29/248 (11%)

Query: 68  AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLS 127
           A + +  G+   GG +  +   T   D    +       +               R    
Sbjct: 35  AARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDP----------RGVEI 84

Query: 128 VSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG--PDVDAIQIKPKSKHIWI 185
               K I   G        G+ +K+   V++ N+      G   D D I++   S ++W+
Sbjct: 85  KEFTKGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDD-SPNVWV 143

Query: 186 DRCSL-------------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD 232
           D   L                 +  +DI   S  +TVS  +     K  L G   S  +D
Sbjct: 144 DHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDG---SSSSD 200

Query: 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG 292
               +T HH +++    R P  R   VH YNN   N     +    + Q   + N +E  
Sbjct: 201 TGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKA 260

Query: 293 QKKMAFKY 300
              +  +Y
Sbjct: 261 INPVTSRY 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	100.0
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	100.0
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	100.0
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	100.0
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	100.0
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	100.0
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	98.65
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	98.64
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	98.25
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.09
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	97.99
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	97.98
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.98
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.92
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.72
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	97.71
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.44
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	97.42
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.41
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	97.34
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	97.09
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	97.06
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	96.99
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	96.88
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	96.87
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	96.58
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	96.54
d1qjva_	342	Pectin methylesterase PemA {Erwinia chrysanthemi [	96.52
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	96.14
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	95.91
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	95.68
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	95.31
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	95.3
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	95.18
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	93.61

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.6e-72  Score=554.19  Aligned_cols=295  Identities=35%  Similarity=0.527  Sum_probs=258.5

Q ss_pred             ccccccccCCcccccCCCCCCCCCceEEecCCCCC----CChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceee
Q 017716           61 DCSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADD----GPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDG  136 (367)
Q Consensus        61 d~~~~ala~~a~Gfg~~ttGG~gG~v~~VT~l~d~----gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G  136 (367)
                      +.++|+||+||||||++||||+||+||+||||+|+    +|||||+||++++||||||+|+|+|+|+++|.|.|||||+|
T Consensus        15 ~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G   94 (346)
T d1pxza_          15 DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDG   94 (346)
T ss_dssp             TTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEEC
T ss_pred             HHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEeccceEEeCCCceEEc
Confidence            46899999999999999999999999999999998    99999999999999999999999999999999999999999


Q ss_pred             eccceEEeCCc--EEEeeeccEEEeeeEEeCCC-------------------CCCCCceEecCCCceEEEEceeeecCCC
Q 017716          137 RGQRVKLTGKG--LRLKECEHVIICNLEFEGGK-------------------GPDVDAIQIKPKSKHIWIDRCSLRDYDD  195 (367)
Q Consensus       137 ~G~gi~I~G~g--i~i~~a~NVIIRnL~i~~g~-------------------~~d~DaI~i~~~s~nVWIDHcsfs~~~D  195 (367)
                      ||..+.|.+.+  |.+.+++|||||||+|+.+.                   ..++|+|.|+ +++|||||||+|+|+.|
T Consensus        95 ~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~-~s~nvwIDH~s~s~~~D  173 (346)
T d1pxza_          95 RGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSD  173 (346)
T ss_dssp             TTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSS
T ss_pred             cCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeee-cCceEEEECcEeecccc
Confidence            99888888654  88888999999999999753                   2457999998 79999999999999999


Q ss_pred             CceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCC-CCCCCccccCeeEEEcceEECccccee
Q 017716          196 GLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT-RQRHPRVRYAKVHLYNNYTRNWGIYAV  274 (367)
Q Consensus       196 glidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~-~~R~Pr~r~G~~Hv~NN~~~n~~~yai  274 (367)
                      |+||+++++++||||||+|++|.|++|+|+++....++.++||||||+|.++ .+|.|++|+|++|++||||++|..|++
T Consensus       174 ~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~  253 (346)
T d1pxza_         174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI  253 (346)
T ss_dssp             EEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE
T ss_pred             CceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEE
Confidence            9999999999999999999999999999998877677788999999999655 566778899999999999999999999


Q ss_pred             eecCCceEEEEceeEecCCccee---eeeeccccCCcccCCCcEEEecCCeeeccccccccccCCCCcccCCCCCCcccc
Q 017716          275 CASVDSQIYSQCNIYEAGQKKMA---FKYLTEKASDKEEARTDCIRSEGDLSSLKLKAGLMAEAGEHNMFHPSEHYYTWT  351 (367)
Q Consensus       275 ~~~~~a~i~~e~N~F~~g~~~~v---~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~~~~~~~~~~~~~P~~~Y~~~~  351 (367)
                      ++++++++++|+|||++++.+..   ++...  .........+.|++++|.|+|++...........+.|.|++.|+..+
T Consensus       254 ~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~~~~~~~~y~~~~  331 (346)
T d1pxza_         254 GGSSNPTILSEGNSFTAPSESYKKEVTKRIG--CESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVEN  331 (346)
T ss_dssp             EEESCCEEEEESCEEECCSCGGGCBSEEECS--CSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTTTCCCCCC
T ss_pred             eccCceEEEEEeeEEECCCCccceeeecccc--cCCccccccceeeccCceeeccceeccCCCccccccccCccccccCC
Confidence            99999999999999999876533   22221  11223457789999999999998766544445667899999998776


Q ss_pred             ------eeecccCC
Q 017716          352 ------LLQRCTGW  359 (367)
Q Consensus       352 ------~~~~~ag~  359 (367)
                            +++ +||+
T Consensus       332 as~V~~v~~-~AGa  344 (346)
T d1pxza_         332 GNAAPQLTK-NAGV  344 (346)
T ss_dssp             GGGHHHHTT-TCSS
T ss_pred             HHHHHhhhc-cCCC
Confidence                  454 6775

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=100.00  E-value=6.2e-62  Score=479.54  Aligned_cols=281  Identities=25%  Similarity=0.360  Sum_probs=231.6

Q ss_pred             CcccccC----CCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec--------------ceeEeccC
Q 017716           70 QAEGFGR----LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR--------------SHLSVSSY  131 (367)
Q Consensus        70 ~a~Gfg~----~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~--------------~~l~V~sn  131 (367)
                      ++.|||+    .|+||+||+||+||||+|     ||+|+++++|+++||+|+|+|+|.              .+|.|.||
T Consensus         7 a~~G~a~~~g~~t~GG~gg~v~~Vt~l~d-----L~~al~~~~~~~~vi~v~G~I~~~~~~~~~~~~~~~~~~~i~v~sn   81 (355)
T d1pcla_           7 ATTGWATQNGGTTGGAKAAKAVEVKNISD-----FKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPSN   81 (355)
T ss_pred             CCCceeccCCCCCcCCCCceEEEeCCHHH-----HHHHHhCcCCceEEEEECeEEEcCCccceeccccccccceEecCCC
Confidence            5677776    488999999999999999     999999999999999999999874              45788999


Q ss_pred             cceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCC------------CCCCCceEecCCCceEEEEceeeecCC-----
Q 017716          132 KTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGK------------GPDVDAIQIKPKSKHIWIDRCSLRDYD-----  194 (367)
Q Consensus       132 kTI~G~G~gi~I~G~gi~i~~a~NVIIRnL~i~~g~------------~~d~DaI~i~~~s~nVWIDHcsfs~~~-----  194 (367)
                      |||+|+|.+++|.|.+|+|++++|||||||+||.+.            ..+.|+|.+. +++|||||||+|+|+.     
T Consensus        82 ~TI~G~G~~~~i~g~gl~i~~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~-~~~~vwIDHcs~s~~~d~~~~  160 (355)
T d1pcla_          82 TTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDDK  160 (355)
T ss_pred             CeEEeccCceEEecCEEEEEccccEEEEeeEeecCcccCCccccCCCcCccCceEEec-CCccEEEECcccccCcccccc
Confidence            999999999999999999999999999999999753            1347999998 8999999999999963     


Q ss_pred             ------------CCceEeecCCceEEEeCceecCCCceeEecCCCCCC--CCcceeEEEecceecCCCCCCCccccCeeE
Q 017716          195 ------------DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV--ADRCIRVTIHHCFFDGTRQRHPRVRYAKVH  260 (367)
Q Consensus       195 ------------Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~--~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~H  260 (367)
                                  ||++|++.++++||||||+|.+|+|++|+|+++...  .+...+||||||||+++.+|+||+|+|++|
T Consensus       161 ~~~~~~~~~~~~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~G~~h  240 (355)
T d1pcla_         161 YTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIH  240 (355)
T ss_pred             cccccccccccccceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCcccccEEE
Confidence                        899999999999999999999999999999987553  234579999999999999999999999999


Q ss_pred             EEcceEECccc-------ceeeecCCceEEEEceeEecCCcceeeeeeccccCC-cccCCCcEEEecCCeeecccccccc
Q 017716          261 LYNNYTRNWGI-------YAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASD-KEEARTDCIRSEGDLSSLKLKAGLM  332 (367)
Q Consensus       261 v~NN~~~n~~~-------yai~~~~~a~i~~e~N~F~~g~~~~v~~~~~~~~~~-~~~~~~g~~~~~gn~f~ng~~~~~~  332 (367)
                      ++||||++|..       |+++.+.++++++|+|||++++.+.....  ..... .......++... +.++++......
T Consensus       241 v~NN~~~n~~~~~~~~~~y~~~~~~~~~v~~e~NyF~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~  317 (355)
T d1pcla_         241 AYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESNSFTLSNLKSIDGK--NPECSIVKQFNSKVFSDK-GSLVNGSTTTKL  317 (355)
T ss_pred             EECcEEECCCCcccccceeeeccCcCceEEEeCCEEECCCCcccccc--CCCccceeccCCcEEecC-cccccCcccccc
Confidence            99999998754       68999999999999999999876544321  11111 112344445444 445677666554


Q ss_pred             ccCCCCcccCCCCCCcccc---------eeecccCCc
Q 017716          333 AEAGEHNMFHPSEHYYTWT---------LLQRCTGWQ  360 (367)
Q Consensus       333 ~~~~~~~~~~P~~~Y~~~~---------~~~~~ag~q  360 (367)
                      . ....+.|.|...|++..         .|+..||+.
T Consensus       318 ~-~~~~~~~~~~~p~~~~~~~~a~~v~~~V~~~AGAG  353 (355)
T d1pcla_         318 D-TCGLTAYKPTLPYKYSAQTMTSSLATSINNNAGYG  353 (355)
T ss_pred             C-CccccccccCCCccceecChHHHHHHHHhhcCCCC
Confidence            4 34456788877776544         788888874

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=100.00  E-value=1.3e-61  Score=478.78  Aligned_cols=280  Identities=23%  Similarity=0.344  Sum_probs=219.9

Q ss_pred             CCcccccC---CCCCCCCC---ceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec--------------ceeEe
Q 017716           69 GQAEGFGR---LAIGGLHG---PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR--------------SHLSV  128 (367)
Q Consensus        69 ~~a~Gfg~---~ttGG~gG---~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~--------------~~l~V  128 (367)
                      .+++||++   +||||+||   +||+||||+|     ||+||+++.++.|| .|+|+|++.              .+|.|
T Consensus        12 ~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~d-----L~~al~~~~~p~iI-~v~G~I~~~~~~~~~~~~~~~~~~~i~v   85 (361)
T d1pe9a_          12 APTVGWASQNGFTTGGAAATSDNIYIVTNISE-----FTSALSAGAEAKII-QIKGTIDISGGTPYTDFADQKARSQINI   85 (361)
T ss_dssp             CCSSSGGGSSSCCCTTTTCCGGGEEEECSHHH-----HHHHHTTTTSCEEE-EECSEEETTTTCCCCSHHHHHHHSEEEC
T ss_pred             cCCcceeecCCCCCcCCCCcCCEEEEeCCHHH-----HHHHHhCCCCeEEE-EEeeEEECCCCccccccccccccceEEe
Confidence            45688886   68777776   6999999999     99999875544443 499999984              46889


Q ss_pred             ccCcceeeeccceEEeCCcEEEe---eeccEEEeeeEEeCCCC------------CCCCceEecCCCceEEEEceeeecC
Q 017716          129 SSYKTIDGRGQRVKLTGKGLRLK---ECEHVIICNLEFEGGKG------------PDVDAIQIKPKSKHIWIDRCSLRDY  193 (367)
Q Consensus       129 ~snkTI~G~G~gi~I~G~gi~i~---~a~NVIIRnL~i~~g~~------------~d~DaI~i~~~s~nVWIDHcsfs~~  193 (367)
                      .|||||+|+|.+++|.+.+|.|.   +++|||||||+||.+..            .+.|+|+|..+++|||||||+|+|+
T Consensus        86 ~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~  165 (361)
T d1pe9a_          86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDG  165 (361)
T ss_dssp             CSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECT
T ss_pred             CCCcEEEEecCCeEEeeeeEEEeeccccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccC
Confidence            99999999999999999999995   68899999999997531            3579999975689999999999996


Q ss_pred             C-----------------CCceEeecCCceEEEeCceecCCCceeEecCCCCCC--CCcceeEEEecceecCCCCCCCcc
Q 017716          194 D-----------------DGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV--ADRCIRVTIHHCFFDGTRQRHPRV  254 (367)
Q Consensus       194 ~-----------------Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~--~d~~~~VT~hhN~f~~~~~R~Pr~  254 (367)
                      .                 ||++|++.++++||||||+|.+|.|+||+|++++..  .+..++||||||||+++.+|+||+
T Consensus       166 ~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~  245 (361)
T d1pe9a_         166 NFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRV  245 (361)
T ss_dssp             TSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEE
T ss_pred             CccccccccccCcceeeeeeeEEeecCccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCCcCcCCCe
Confidence            4                 999999999999999999999999999999987642  234579999999999999999999


Q ss_pred             ccCeeEEEcceEECccc-------ceeeecCCceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeeccc
Q 017716          255 RYAKVHLYNNYTRNWGI-------YAVCASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKL  327 (367)
Q Consensus       255 r~G~~Hv~NN~~~n~~~-------yai~~~~~a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~  327 (367)
                      |+|++|+|||||++|..       |+++++.++++++|+|||+.++.+.....      .......|.+....+.+++|+
T Consensus       246 r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~~------~~~~~~~g~~~~~~~~~~~g~  319 (361)
T d1pe9a_         246 RYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKAC------KVVKKFNGSIFSDNGSVLNGS  319 (361)
T ss_dssp             SSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGG------GGEEESSCCEEEEESCEETTE
T ss_pred             eCceEEEECceeecCcCccccccceeeecCCCCEEEEEceEEECCCCCccccc------ceeecCCCCEEecCCeeecCc
Confidence            99999999999998753       89999999999999999998764422100      011122334444455666776


Q ss_pred             cccccccCCCCcccCCCCCCcccc-------eeecccCCc
Q 017716          328 KAGLMAEAGEHNMFHPSEHYYTWT-------LLQRCTGWQ  360 (367)
Q Consensus       328 ~~~~~~~~~~~~~~~P~~~Y~~~~-------~~~~~ag~q  360 (367)
                      ...+.....+.....|+|-|....       .|+.+||+-
T Consensus       320 ~~~~~~~~~~~~~~~~py~y~~~~~a~~v~~~V~~~AGaG  359 (361)
T d1pe9a_         320 AVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSG  359 (361)
T ss_dssp             ECCCTTSSCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTT
T ss_pred             cccccCCcccccccCCCcccccccchHHHHHHHHhcCCCC
Confidence            655443333333444455554332       788888874

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.9e-60  Score=476.02  Aligned_cols=283  Identities=27%  Similarity=0.420  Sum_probs=230.2

Q ss_pred             ccccccccCCcccccC---CCCCCCCC---ceEEecCCCCCCChhHHHhhh---cCCCeEEEEEeceEEEecc-------
Q 017716           61 DCSLRALAGQAEGFGR---LAIGGLHG---PLYHVTTLADDGPGSLREGCR---MKEPLWIVFEVSGTIHLRS-------  124 (367)
Q Consensus        61 d~~~~ala~~a~Gfg~---~ttGG~gG---~v~~VT~l~d~gpGSLr~Ai~---~~~P~~IVf~vsGtI~l~~-------  124 (367)
                      |..+|.|+ .++|||+   +||||.++   +||+|+|++|     |++||.   .++||+|+  ++|+|+...       
T Consensus         2 ~~~~~~~~-~~~G~As~~~gttGG~~a~~~~v~~v~t~~e-----l~~~l~~~~~~~P~vI~--~~gti~~~~~~~~~~~   73 (399)
T d1bn8a_           2 DLGHQTLG-SNDGWGAYSTGTTGGSKASSSNVYTVSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPL   73 (399)
T ss_dssp             CGGGCCCC-TTSSGGGSTTCCCTTTTCCGGGEEEECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBC
T ss_pred             cchhhccc-CCCceeecCCCcCCCCCCCCCceEecCCHHH-----HHHHHhhccCCCceEEE--EccEEecccccccccc
Confidence            55566666 7999986   79999777   4899999999     999994   57899887  679997631       


Q ss_pred             ------------------------------------------------eeEeccCcceeeeccceEEeCCcEEEeeeccE
Q 017716          125 ------------------------------------------------HLSVSSYKTIDGRGQRVKLTGKGLRLKECEHV  156 (367)
Q Consensus       125 ------------------------------------------------~l~V~snkTI~G~G~gi~I~G~gi~i~~a~NV  156 (367)
                                                                      +|.|.|||||+|+|.+++|.|.+|+| +++||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i-~a~NV  152 (399)
T d1bn8a_          74 GLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQI-KSDNV  152 (399)
T ss_dssp             CHHHHCCTTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEE-CSEEE
T ss_pred             cccccccccccccccccccChhhhccccccccccccccccccccccceEEecCCCceEEecCCCcEEeccEEEE-eCceE
Confidence                                                            58899999999999999999999999 59999


Q ss_pred             EEeeeEEeCCCC----------------CCCCceEecCCCceEEEEceeeecCC-----------------CCceEeecC
Q 017716          157 IICNLEFEGGKG----------------PDVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRE  203 (367)
Q Consensus       157 IIRnL~i~~g~~----------------~d~DaI~i~~~s~nVWIDHcsfs~~~-----------------Dglidi~~~  203 (367)
                      |||||+||+...                .++|+|+|. +++|||||||+|+|+.                 ||+||++.+
T Consensus       153 Iirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~g  231 (399)
T d1bn8a_         153 IIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNG  231 (399)
T ss_dssp             EEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEE-SCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETT
T ss_pred             EEeCeEEEcCcccccccccccccccCcCCCCceEEEe-cCccEEEECceeccCCcccccccccccccccccccceeeccc
Confidence            999999996531                358999998 7999999999999974                 999999999


Q ss_pred             CceEEEeCceecCCCceeEecCCCCCCCC-cceeEEEecceecCCCCCCCccccCeeEEEcceEECccc-------ceee
Q 017716          204 STDITVSRCHFSSHDKTMLIGADPSHVAD-RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI-------YAVC  275 (367)
Q Consensus       204 s~~VTIS~n~f~~H~k~~LiG~sd~~~~d-~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~-------yai~  275 (367)
                      +++||||||+|.+|+|+||+|++|+...| +.++||||||||+++.+|+||+|+|++|+|||||++|..       |+++
T Consensus       232 s~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~  311 (399)
T d1bn8a_         232 ANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWG  311 (399)
T ss_dssp             CEEEEEESCEEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEE
T ss_pred             ceeEEeECccccCCcceeEecCCCCcccccCCceEEEEeeEecCccccCccccccEEEEEccEeECCCcccccccceeec
Confidence            99999999999999999999999876544 468999999999999999999999999999999999865       8999


Q ss_pred             ecCCceEEEEceeEecCCcceeeeeeccccCCcccCCCcEEEecCCeeecccccc-cc-ccCCCCcccCCCCCCcccc--
Q 017716          276 ASVDSQIYSQCNIYEAGQKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAG-LM-AEAGEHNMFHPSEHYYTWT--  351 (367)
Q Consensus       276 ~~~~a~i~~e~N~F~~g~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~-~~-~~~~~~~~~~P~~~Y~~~~--  351 (367)
                      +++++++++|+|||+.+..+......       .......+...++++ ++.... .. ....+.+.|.|++.|+.++  
T Consensus       312 ~~~~a~il~EgN~F~~~~~~~~~~~~-------~~~~g~~~~~~gn~~-~g~~~~~~~~~~~~~~~~~~p~y~y~~~~A~  383 (399)
T d1bn8a_         312 IGKSSKIYAQNNVIDVPGLSAAKTIS-------VFSGGTALYDSGTLL-NGTQINASAANGLSSSVGWTPSLHGSIDASA  383 (399)
T ss_dssp             ECTTCEEEEESCEEECTTCCSGGGEE-------ECTTCCBCEEESCEE-TTEECCHHHHTTCBSCCSCCCCSCCCCCCHH
T ss_pred             cccCceEEEEeeEEECCCCcccceec-------cccCCceEecCCcEe-cCccccCccCcCcccccccccccccccCCHH
Confidence            99999999999999988754322111       011222344445554 332222 11 1234567899999998876  


Q ss_pred             ----eeecccCCcc
Q 017716          352 ----LLQRCTGWQD  361 (367)
Q Consensus       352 ----~~~~~ag~q~  361 (367)
                          +|...||+--
T Consensus       384 ~v~~~V~a~AGAGk  397 (399)
T d1bn8a_         384 NVKSNVINQAGAGK  397 (399)
T ss_dssp             HHHHHHHHHCSTTS
T ss_pred             HHHHHhhccCCCcc
Confidence                7888898753

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=100.00  E-value=2.6e-61  Score=476.31  Aligned_cols=222  Identities=23%  Similarity=0.281  Sum_probs=199.6

Q ss_pred             ccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEec-----------------------
Q 017716           67 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR-----------------------  123 (367)
Q Consensus        67 la~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~-----------------------  123 (367)
                      +++.|||||+.||||++|++|+|||++|     ||+||++++||||+|  +|+|++.                       
T Consensus         3 v~g~a~Gfa~~ttGG~~g~v~~Vtt~~e-----L~~al~~~~PriI~~--~gtid~~~~~~~~~~~~~~~~~~~~~~~~~   75 (359)
T d1qcxa_           3 VVGAAEGFAHGVTGGGSASPVYPTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQVA   75 (359)
T ss_dssp             CCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCEE
T ss_pred             CCccCcccccCCCCCCCCeEEEeCCHHH-----HHHHhcCCCCeEEEE--CceEcccccccccccccccccccccccccc
Confidence            5678999999999999999999999999     999999999999997  4777764                       


Q ss_pred             --------------------------ceeEeccCcceeeeccceEEeCCcEEE-eeeccEEEeeeEEeCCCC---CCCCc
Q 017716          124 --------------------------SHLSVSSYKTIDGRGQRVKLTGKGLRL-KECEHVIICNLEFEGGKG---PDVDA  173 (367)
Q Consensus       124 --------------------------~~l~V~snkTI~G~G~gi~I~G~gi~i-~~a~NVIIRnL~i~~g~~---~d~Da  173 (367)
                                                .+|.|.|||||+|+|.+++|.|.+|++ ++++|||||||+||++..   .++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Da  155 (359)
T d1qcxa_          76 INLHSWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDA  155 (359)
T ss_dssp             ECGGGHHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCS
T ss_pred             cccccccccccccCcceeeeeeccCcceEEeCCCCeEEeccCCeEEEccceEEEeCCccEEEeCeEEecCCCCCCCCCCe
Confidence                                      258899999999999999999999977 579999999999997653   46799


Q ss_pred             eEecCCCceEEEEceeeecCCCC-ceEeecCCceEEEeCceecCCCceeEecCCCCCC----CCcceeEEEecceecCCC
Q 017716          174 IQIKPKSKHIWIDRCSLRDYDDG-LIDITRESTDITVSRCHFSSHDKTMLIGADPSHV----ADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       174 I~i~~~s~nVWIDHcsfs~~~Dg-lidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~----~d~~~~VT~hhN~f~~~~  248 (367)
                      |+|. +++|||||||+|+|..|+ ++|+++.+++||||||+|.+|.|.++++..+...    .++.++||||||||+++.
T Consensus       156 i~i~-~s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~  234 (359)
T d1qcxa_         156 ITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLS  234 (359)
T ss_dssp             EEEE-SCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBC
T ss_pred             EEee-CCCCEEEEeeeccccCCCceEeeccCCCceEeeccEeccCccccccccccCCCCceecCCCceEEEEeeeccCCC
Confidence            9998 899999999999998875 6688888999999999999999999998765432    346689999999999999


Q ss_pred             CCCCccccCe-eEEEcceEECcccceeeecCCceEEEEceeEecCCcce
Q 017716          249 QRHPRVRYAK-VHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKM  296 (367)
Q Consensus       249 ~R~Pr~r~G~-~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~~  296 (367)
                      +|+||+|+|. +||+||||++|..|++++++++++++|+|||++++.+.
T Consensus       235 ~R~P~~r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~  283 (359)
T d1qcxa_         235 GRMPKVQGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVV  283 (359)
T ss_dssp             SCTTEECSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEE
T ss_pred             CCCccccCCceEEEEeeEEeCcCCEEEecCCceEEEEEeeEEECCCCcc
Confidence            9999999996 99999999999999999999999999999999876543

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=100.00  E-value=3.3e-57  Score=446.45  Aligned_cols=221  Identities=21%  Similarity=0.235  Sum_probs=194.0

Q ss_pred             ccCCcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEE-------------------------
Q 017716           67 LAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIH-------------------------  121 (367)
Q Consensus        67 la~~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~-------------------------  121 (367)
                      +.+.|||||+.||||++|++|+|||++|     ||+||.+++||+|+|+  |+|+                         
T Consensus         3 v~~~a~Gfa~~ttGG~~g~~~~Vtt~~e-----L~~al~~~~PriI~~~--g~~d~~~~~~~~~~~~~~~~~~~~~~~~~   75 (359)
T d1idka_           3 VSGSAEGFAKGVTGGGSATPVYPDTIDE-----LVSYLGDDEARVIVLT--KTFDFTDSEGTTTGTGCAPWGTASACQVA   75 (359)
T ss_dssp             CCSCCCGGGTTCCTTTTCCCBCCCSHHH-----HHHHHHSSSCEEEEEC--SEEECTTTTCEEEEEEECTTCSSTTBCEE
T ss_pred             ccccCcccccCCCCCCCCeEEEeCCHHH-----HHHHhcCCCCeEEEEc--ceEeccccccccccccccccccccccccc
Confidence            5688999999999999999999999999     9999999999999974  5554                         


Q ss_pred             ------------------------ecceeEeccCcceeeeccceEEeCCcEEE-eeeccEEEeeeEEeCCCC---CCCCc
Q 017716          122 ------------------------LRSHLSVSSYKTIDGRGQRVKLTGKGLRL-KECEHVIICNLEFEGGKG---PDVDA  173 (367)
Q Consensus       122 ------------------------l~~~l~V~snkTI~G~G~gi~I~G~gi~i-~~a~NVIIRnL~i~~g~~---~d~Da  173 (367)
                                              ++.+|+|+|||||+|+|.+++|.|.+|.| ++++|||||||+||++..   +++||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~Da  155 (359)
T d1idka_          76 IDQDDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA  155 (359)
T ss_dssp             ECGGGHHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCS
T ss_pred             cccccccccccccCccceeeeeccCCCceEeCCCceEEeccCCeEEecCceEEEecCceEEEECcEEecCCCCCCCCCCe
Confidence                                    33468999999999999999999999988 579999999999998653   45799


Q ss_pred             eEecCCCceEEEEceeeecCCCCce-EeecCCceEEEeCceecCCCceeEecCCCCC----CCCcceeEEEecceecCCC
Q 017716          174 IQIKPKSKHIWIDRCSLRDYDDGLI-DITRESTDITVSRCHFSSHDKTMLIGADPSH----VADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       174 I~i~~~s~nVWIDHcsfs~~~Dgli-di~~~s~~VTIS~n~f~~H~k~~LiG~sd~~----~~d~~~~VT~hhN~f~~~~  248 (367)
                      |+|. +++|||||||+|+|..|+.+ +.++.+++||||||+|.+|.+.++++.+..+    ..+..++||||||||+++.
T Consensus       156 I~i~-~s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~  234 (359)
T d1idka_         156 ITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTS  234 (359)
T ss_dssp             EEEC-SCEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBC
T ss_pred             EEee-CCccEEEEeeeeccCCCCceeeeccCCCceeeeceeeeccccccccccccccCCceecCCCccEEEEeeEEccCC
Confidence            9998 89999999999999999976 5678899999999999988877665543222    1233479999999999999


Q ss_pred             CCCCccccC-eeEEEcceEECcccceeeecCCceEEEEceeEecCCcc
Q 017716          249 QRHPRVRYA-KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKK  295 (367)
Q Consensus       249 ~R~Pr~r~G-~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~  295 (367)
                      +|+||+|+| ++|++||||++|..|++.+++++++++|+|||++...+
T Consensus       235 ~R~P~~r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p  282 (359)
T d1idka_         235 GRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTV  282 (359)
T ss_dssp             SCTTEECTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEE
T ss_pred             CCCceecccceEEEECcEEECccceEEecCCceeEEEeceEEeCCcCC
Confidence            999999998 79999999999999999999999999999999976543

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=100.00  E-value=2.1e-45  Score=361.02  Aligned_cols=271  Identities=20%  Similarity=0.193  Sum_probs=204.0

Q ss_pred             CcccccCCCCCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEEeceEEEecceeEeccCcceeeeccceEEeCCcEE
Q 017716           70 QAEGFGRLAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLR  149 (367)
Q Consensus        70 ~a~Gfg~~ttGG~gG~v~~VT~l~d~gpGSLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V~snkTI~G~G~gi~I~G~gi~  149 (367)
                      ...+.|+.+.||+.+.+++|+.+.|...+.+...+.......    ..+.+    .+.+.+++||+|+  .+.+.+.+|.
T Consensus        37 ~~~~~g~~~~gg~~~~vi~~~G~~d~~~~~~~~~~~~~~~~~----~~~~~----i~~~~~~i~i~G~--~~~~~~~gl~  106 (353)
T d1o88a_          37 RLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKD----PRGVE----IKEFTKGITIIGA--NGSSANFGIW  106 (353)
T ss_dssp             TBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTTGGGSTTSC----CCEEE----EESBCSCEEEEEC--TTCCBSSEEE
T ss_pred             ccccccceecCCCeEEEEEEeeeeecccCccccccccccccc----ccCcE----EEecCCCEEEEcC--CCccccceEE
Confidence            466778888899999999999887743322222221111000    01111    1223456666665  5567889999


Q ss_pred             EeeeccEEEeeeEEeCCCC--CCCCceEecCCCceEEEEceeeecCC-------------CCceEeecCCceEEEeCcee
Q 017716          150 LKECEHVIICNLEFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRDYD-------------DGLIDITRESTDITVSRCHF  214 (367)
Q Consensus       150 i~~a~NVIIRnL~i~~g~~--~d~DaI~i~~~s~nVWIDHcsfs~~~-------------Dglidi~~~s~~VTIS~n~f  214 (367)
                      |.+++|||||||+||.+..  .+.|+|.++ +++|||||||+|+|+.             |+++|+++++++||||||+|
T Consensus       107 i~~~~nViirnl~i~~~~~~~~~~D~i~~~-~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~~  185 (353)
T d1o88a_         107 IKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYI  185 (353)
T ss_dssp             EESCCSEEEESCEEECCSCGGGTCCSEEEE-SCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCEE
T ss_pred             EeccceEEEeCcEEecCCCCCCCCcEEEEe-cccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECccc
Confidence            9999999999999997653  468999998 8999999999999875             56899999999999999999


Q ss_pred             cCCCceeEecCCCCCCCCcceeEEEecceecCCCCCCCccccCeeEEEcceEECcccceeeecCCceEEEEceeEecCCc
Q 017716          215 SSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK  294 (367)
Q Consensus       215 ~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~  294 (367)
                      .+|.|++|+|+++...   ..+||||||||+++.+|+||+|+|.+|+|||||++|..|++++++++++++|+|||++.+.
T Consensus       186 ~~~~k~~l~g~~~~~~---~~~vT~hhN~~~~~~~R~P~~~~g~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~~  262 (353)
T d1o88a_         186 HGVKKVGLDGSSSSDT---GRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAIN  262 (353)
T ss_dssp             EEEEECCEESSSSSCC---CCEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEES
T ss_pred             ccccccceeCCccCcC---CceEEEEeeEEcCCccCCcceecceEEEEEEEEecccceEEecCCCceEEEEeeEEecccC
Confidence            9999999999887543   3489999999999999999999999999999999999999999999999999999999887


Q ss_pred             ceeeeeeccccCCcccCCCcEEEecCCeeecccccc-------------ccccCCCCcccCCCCCCccc--c------ee
Q 017716          295 KMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKAG-------------LMAEAGEHNMFHPSEHYYTW--T------LL  353 (367)
Q Consensus       295 ~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~~-------------~~~~~~~~~~~~P~~~Y~~~--~------~~  353 (367)
                      +....+        +....|++..++|.|..+....             ..........+.|+..|++.  +      +|
T Consensus       263 p~~~~~--------~~~~~g~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~t~~~A~~v~~~V  334 (353)
T d1o88a_         263 PVTSRY--------DGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYNYSPVSAQCVKDKL  334 (353)
T ss_dssp             SEEECS--------SSSSCCEEEEESCSCCSTTHHHHTTEECCCCSSCCEECTTCCCCSCCCCCCSCCCCCCHHHHHHHG
T ss_pred             Cccccc--------cCCcceeEEECCCeeecccccccccccccccccccccCCcccccccccCCCcccccCCHHHHHHHH
Confidence            755332        3456789999999887642110             00111223455555555543  3      89


Q ss_pred             ecccCCccc
Q 017716          354 QRCTGWQDV  362 (367)
Q Consensus       354 ~~~ag~q~~  362 (367)
                      +.+||+.--
T Consensus       335 ~~~AGaGk~  343 (353)
T d1o88a_         335 PGYAGVGKN  343 (353)
T ss_dssp             GGTSSSSST
T ss_pred             HhcCCCCCC
Confidence            999998653

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=98.65  E-value=2.1e-07  Score=89.75  Aligned_cols=94  Identities=20%  Similarity=0.347  Sum_probs=56.6

Q ss_pred             EEEeeeccEEEeeeEEeCCCC------------------------CCCCceEecCCCceEEEEceeeecCCCCceEeecC
Q 017716          148 LRLKECEHVIICNLEFEGGKG------------------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRE  203 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~------------------------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~  203 (367)
                      |.+.+++||.|++|+|+....                        ...|||.+. .++||||+.|.|....|. |.++..
T Consensus       154 i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~-~s~nv~I~n~~i~~gDD~-i~~ks~  231 (376)
T d1bhea_         154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAY  231 (376)
T ss_dssp             EEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSCS-EEEEEC
T ss_pred             EEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeecc-ccceEEEEeceeecCCCc-eeeecc
Confidence            677777888888888775421                        124677775 667777777777554444 555442


Q ss_pred             -----CceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCC
Q 017716          204 -----STDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       204 -----s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~  248 (367)
                           +.+|+|.+|.|.. ..++.+|+...    ...+|+|++|.|.++.
T Consensus       232 ~~~~~~~ni~i~n~~~~~-~~g~~iGs~~~----~v~nv~i~n~~~~~~~  276 (376)
T d1bhea_         232 KGRAETRNISILHNDFGT-GHGMSIGSETM----GVYNVTVDDLKMNGTT  276 (376)
T ss_dssp             TTSCCEEEEEEEEEEECS-SSCEEEEEEES----SEEEEEEEEEEEESCS
T ss_pred             cCCCCcceEEEEeeEEec-CCCceeccccC----CEEEEEEEeeeEcCCC
Confidence                 3467777777754 33566665321    1225777777666543

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=98.64  E-value=3.4e-07  Score=89.34  Aligned_cols=192  Identities=18%  Similarity=0.239  Sum_probs=110.7

Q ss_pred             hHHHhhhcCCCeEEEEEeceEEEecceeEe------ccCcceeeec-cceEEeCC-cEEEeeeccEEEeeeEEeCCCC--
Q 017716           99 SLREGCRMKEPLWIVFEVSGTIHLRSHLSV------SSYKTIDGRG-QRVKLTGK-GLRLKECEHVIICNLEFEGGKG--  168 (367)
Q Consensus        99 SLr~Ai~~~~P~~IVf~vsGtI~l~~~l~V------~snkTI~G~G-~gi~I~G~-gi~i~~a~NVIIRnL~i~~g~~--  168 (367)
                      +|++||+...|.-.|+-..|+.+ ...|.+      .+.+||.+.+ ..+.|.|. .|+|. +++|+|++|+|+++..  
T Consensus         8 tiq~Ai~~a~pGDtI~l~~GtY~-~~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i~-g~~v~i~Gl~~~~~~~~~   85 (481)
T d1ofla_           8 TLYQVVKEVKPGGLVQIADGTYK-DVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLILEGIWFKDGNRAI   85 (481)
T ss_dssp             HHHHHHHHCCTTCEEEECSEEEE-TCEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEEEESCEEEEECCCG
T ss_pred             HHHHHHHhCCCCCEEEECCCEEE-cCEEEeccCcccCCCEEEEeCCCCceEEcCCCeEEEE-eCCEEEeCeEEECCCCcc
Confidence            59999999888766666788885 223433      3468999985 45677765 47775 7899999999987532  


Q ss_pred             ----CCCCceEecCCCceEEEEceeeecCCCCc---eEee-----cCCceEEEeCceecCCC-ceeEe--cCCCCCCC--
Q 017716          169 ----PDVDAIQIKPKSKHIWIDRCSLRDYDDGL---IDIT-----RESTDITVSRCHFSSHD-KTMLI--GADPSHVA--  231 (367)
Q Consensus       169 ----~d~DaI~i~~~s~nVWIDHcsfs~~~Dgl---idi~-----~~s~~VTIS~n~f~~H~-k~~Li--G~sd~~~~--  231 (367)
                          ....++... .+.++.|.+|.+.......   .+..     ..+.+.+|++|.|..-. .+..+  ........  
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~~~~~G~~i~~~~~~~~~~~~  164 (481)
T d1ofla_          86 QAWKSHGPGLVAI-YGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDG  164 (481)
T ss_dssp             GGCCTTSCCSEEE-CSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCC
T ss_pred             ceeeccCCceEEe-EeecceEeeeEeecccccccceeccceeEEEeeccceEEECceEecCCCCccEEEecCCCceeecC
Confidence                123344333 4678888999887643321   1211     23467889999887521 22211  11111110  


Q ss_pred             ---CcceeEEEecceecCCCCCCCcc---cc-------CeeEEEcceEECcc-cceeeecCCceEEEEceeEecCC
Q 017716          232 ---DRCIRVTIHHCFFDGTRQRHPRV---RY-------AKVHLYNNYTRNWG-IYAVCASVDSQIYSQCNIYEAGQ  293 (367)
Q Consensus       232 ---d~~~~VT~hhN~f~~~~~R~Pr~---r~-------G~~Hv~NN~~~n~~-~yai~~~~~a~i~~e~N~F~~g~  293 (367)
                         .......+++|+|.++..+.+..   +.       ....|.||++++.. ...+-........+++|+|....
T Consensus       165 ~~~~~~~~~~I~~n~~~~~~~~gn~~~~i~~G~s~~~~sn~~v~nN~~~~~~g~~~ii~~~s~~n~I~nN~~~~~~  240 (481)
T d1ofla_         165 SVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQ  240 (481)
T ss_dssp             SCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBTCEEESCEEESCS
T ss_pred             cccccccccEEEeeEecCccccCCceeEEEeeeEeeccCCEEEEeeeEEccCCceEEEEecCCCcEEeeeEEecCc
Confidence               11124567788776555444432   11       24567778776543 22333333334456777776544

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=98.25  E-value=1.4e-05  Score=75.80  Aligned_cols=72  Identities=18%  Similarity=0.256  Sum_probs=51.0

Q ss_pred             CCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC-CCcee-EecCCCCCCCCcceeEEEecceecCC
Q 017716          170 DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTM-LIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       170 d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~-LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      ..|||.+. +++||+|++|.|..+.|. |.++ ...+|+|.+|.+.. |.-.+ -+|...   ...-.+|++.++.|.++
T Consensus       151 NtDGidi~-~s~nV~I~n~~i~tgDDc-Iaik-s~~ni~i~n~~c~~~hG~sigslG~~~---~~~v~nV~v~n~~i~~t  224 (335)
T d1czfa_         151 NTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVN-SGENIWFTGGTCIGGHGLSIGSVGDRS---NNVVKNVTIEHSTVSNS  224 (335)
T ss_dssp             SCCSEEEC-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSCCEEEEEECSSS---CCEEEEEEEEEEEEEEE
T ss_pred             CCCceEec-CCCeEEEEeeEEecCCce-EEec-CceEEEEEEEEEECCCCccccccCCCC---cCCEeEEEEEeeEEECC
Confidence            46999997 889999999999877666 7885 45799999998864 33221 234321   12224889988888764

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.09  E-value=4.5e-05  Score=72.50  Aligned_cols=94  Identities=16%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             EEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC-CCcee-
Q 017716          149 RLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKTM-  221 (367)
Q Consensus       149 ~i~~a~NVIIRnL~i~~g~-----~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~-H~k~~-  221 (367)
                      .+..++||.|+||+|....     ....|||.+. .+++|+|++|.|....|. |.++ ...+|+|++|.+.. |.-.+ 
T Consensus       131 ~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaik-s~~ni~i~n~~c~~ghG~sig  207 (339)
T d1ia5a_         131 SVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDDC-VAVN-SGENIYFSGGYCSGGHGLSIG  207 (339)
T ss_dssp             EEESCEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSSCEEEE
T ss_pred             EEecccEEEEEEEEEecccCCccCCCCCCccccC-CCCeEEEeeeEEEcCCCe-EEec-CccEEEEEEeEEeccccceec
Confidence            3344555555566555321     1346999997 789999999999987666 7885 45799999999874 33222 


Q ss_pred             EecCCCCCCCCcceeEEEecceecCCC
Q 017716          222 LIGADPSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       222 LiG~sd~~~~d~~~~VT~hhN~f~~~~  248 (367)
                      -+|...   ...-.+|+|.++.|.+..
T Consensus       208 slG~~~---~~~v~nV~v~n~~~~~t~  231 (339)
T d1ia5a_         208 SVGGRS---DNTVKNVTFVDSTIINSD  231 (339)
T ss_dssp             EECSSS---CCEEEEEEEEEEEEESCS
T ss_pred             ccccCc---cccEEEEEEECCcccCCc
Confidence            245432   112247888888887653

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=97.99  E-value=4.1e-05  Score=74.67  Aligned_cols=96  Identities=13%  Similarity=0.318  Sum_probs=73.0

Q ss_pred             cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCceeEecCC
Q 017716          147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD  226 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~s  226 (367)
                      .|.+..++||.|+||+|+.......|||.+.  ++||||.+|.+..+.| .|.++.++.+|+|+++.+. +..++-+|+-
T Consensus       152 ~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~--~snv~I~n~~i~~gDD-cIaiks~s~nI~i~n~~c~-~g~GisiGs~  227 (422)
T d1rmga_         152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW--GSNIWVHDVEVTNKDE-CVTVKSPANNILVESIYCN-WSGGCAMGSL  227 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEE--EEEEEEEEEEEESSSE-EEEEEEEEEEEEEEEEEEE-SSSEEEEEEE
T ss_pred             EEEEeccccEEEEeeEEcCCCCCccceEeec--ccEEEEEeeEEEcCCC-ccccCCCCccEEEEeeEEc-cccceeEeec
Confidence            4777789999999999998655557999996  4689999999987555 4899999999999998876 3446777753


Q ss_pred             CCCCCCcceeEEEecceecCCC
Q 017716          227 PSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       227 d~~~~d~~~~VT~hhN~f~~~~  248 (367)
                      ....  .-.+|++.+++|.+..
T Consensus       228 g~~~--~V~nV~v~n~~~~~s~  247 (422)
T d1rmga_         228 GADT--DVTDIVYRNVYTWSSN  247 (422)
T ss_dssp             CTTE--EEEEEEEEEEEEESSS
T ss_pred             cCCC--CEEEEEEEeEEEeCCC
Confidence            2211  1237888888887654

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=97.98  E-value=3.3e-05  Score=73.43  Aligned_cols=158  Identities=15%  Similarity=0.172  Sum_probs=104.1

Q ss_pred             eEecc--Ccceeeeccce---------EEeCCcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec--
Q 017716          126 LSVSS--YKTIDGRGQRV---------KLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD--  192 (367)
Q Consensus       126 l~V~s--nkTI~G~G~gi---------~I~G~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~--  192 (367)
                      |.|..  .-||+|+|+.-         ..+-.-|.+.+++||.|++|+|+....   =.|.+. .+++|.|++..+..  
T Consensus        74 i~i~G~g~g~IDG~G~~wW~~~~~~~~~~rP~~l~~~~~~nv~i~gitl~nsp~---w~~~~~-~s~nv~i~~v~I~~~~  149 (339)
T d1ia5a_          74 LTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPV---QVFSVA-GSDYLTLKDITIDNSD  149 (339)
T ss_dssp             CEEEECTTCEEECCGGGTCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCSS---CCEEEE-SCEEEEEESCEEECGG
T ss_pred             EEEEecCCCeEeCCchhhhhcccCCCCCCCCeEEEEEecCCCEEeceEEEcCCc---eEEEEe-cccEEEEEEEEEeccc
Confidence            45542  34999998521         112223888899999999999998754   467886 79999999999853  


Q ss_pred             -------CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCC-------CCccccCe
Q 017716          193 -------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR-------HPRVRYAK  258 (367)
Q Consensus       193 -------~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R-------~Pr~r~G~  258 (367)
                             ..|| ||+ ..+++|+|.+|.|..-+-+.-+.+.        -++++-++++.....-       ...-..-.
T Consensus       150 ~~~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDDcIaiks~--------~ni~i~n~~c~~ghG~sigslG~~~~~~v~n  219 (339)
T d1ia5a_         150 GDDNGGHNTDA-FDI-GTSTYVTISGATVYNQDDCVAVNSG--------ENIYFSGGYCSGGHGLSIGSVGGRSDNTVKN  219 (339)
T ss_dssp             GTTTTCCSCCS-EEE-ESCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSSCEEEEEECSSSCCEEEE
T ss_pred             CCccCCCCCCc-ccc-CCCCeEEEeeeEEEcCCCeEEecCc--------cEEEEEEeEEeccccceecccccCccccEEE
Confidence                   3699 899 5789999999999988877777643        2577777666433221       11100124


Q ss_pred             eEEEcceEECcccceeee----cCC---ceEEEEceeEecCC-cceee
Q 017716          259 VHLYNNYTRNWGIYAVCA----SVD---SQIYSQCNIYEAGQ-KKMAF  298 (367)
Q Consensus       259 ~Hv~NN~~~n~~~yai~~----~~~---a~i~~e~N~F~~g~-~~~v~  298 (367)
                      +++.|+.+.+.. .++..    +.+   ..|.+|+..+++.. .+...
T Consensus       220 V~v~n~~~~~t~-~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I  266 (339)
T d1ia5a_         220 VTFVDSTIINSD-NGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVV  266 (339)
T ss_dssp             EEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEE
T ss_pred             EEEECCcccCCc-ceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEE
Confidence            678888887653 44422    111   35777777777653 34444

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.98  E-value=0.00011  Score=69.66  Aligned_cols=100  Identities=19%  Similarity=0.292  Sum_probs=65.1

Q ss_pred             EEEeeeccEEEeeeEEeCCC-------------CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCcee
Q 017716          148 LRLKECEHVIICNLEFEGGK-------------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHF  214 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~-------------~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f  214 (367)
                      |.+.+++||.|+||+|+...             ....|||.+. ++++|+|++|.|....|. |.++ ...+|+|++|.|
T Consensus       130 ~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~-~s~nv~I~n~~i~~gDD~-iaik-~~~ni~i~n~~~  206 (349)
T d1hg8a_         130 FDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVT-SGTNIVVSNMYC  206 (349)
T ss_dssp             EEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEES-SEEEEEEEEEEE
T ss_pred             EEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeC-CCCeEEEEeeeecCCCCc-eEec-cccceEEEEEEE
Confidence            34445677777777775421             1246999997 789999999999987776 7785 467999999998


Q ss_pred             cC-CCceeE-ecCCCCCCCCcceeEEEecceecCCCCCCCcc
Q 017716          215 SS-HDKTML-IGADPSHVADRCIRVTIHHCFFDGTRQRHPRV  254 (367)
Q Consensus       215 ~~-H~k~~L-iG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~  254 (367)
                      .. |...+. +|...   ...--+|+|-++.+.+.. |..|+
T Consensus       207 ~~ghg~sigs~G~~~---~~~v~nV~v~n~~~~~~~-~g~rI  244 (349)
T d1hg8a_         207 SGGHGLSIGSVGGKS---DNVVDGVQFLSSQVVNSQ-NGCRI  244 (349)
T ss_dssp             ESSCCEEEEEESSSS---CCEEEEEEEEEEEEEEEE-EEEEE
T ss_pred             eCCcccccccCCCcc---cccEEEEEEEcceecCCc-ceEEE
Confidence            74 443332 45431   111237888887776532 34455

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.92  E-value=0.0023  Score=58.41  Aligned_cols=117  Identities=10%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             CCCCCCceEEecC-CCCCCCh-------hHHHhhhcCCCeEEEEEeceEEEecc------eeEec------cCcceeeec
Q 017716           79 IGGLHGPLYHVTT-LADDGPG-------SLREGCRMKEPLWIVFEVSGTIHLRS------HLSVS------SYKTIDGRG  138 (367)
Q Consensus        79 tGG~gG~v~~VT~-l~d~gpG-------SLr~Ai~~~~P~~IVf~vsGtI~l~~------~l~V~------snkTI~G~G  138 (367)
                      .|=.-+++|+|.. -+|+++|       +|++|++...|...|+-..|+.....      .+.+.      ..+||.+.+
T Consensus         9 ~~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~~i~i~~~~   88 (400)
T d1ru4a_           9 SGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAAN   88 (400)
T ss_dssp             TTCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGG
T ss_pred             cccccCCeEEECCCCcCCCCCCccccHHHHHHHHHhCCCcCEEEEcCceeecceeecCceEEEEecCCCCCCeEEEecCC
Confidence            3334568999973 4455544       59999998777665555679886421      12221      234666654


Q ss_pred             cceE-EeCC-----------cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEee
Q 017716          139 QRVK-LTGK-----------GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDIT  201 (367)
Q Consensus       139 ~gi~-I~G~-----------gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~  201 (367)
                      .+.. |.+.           .+.+. .++++|+++.++...   ..++.+.  +.++-|++|.|.+..+..+.+.
T Consensus        89 ~~~~vi~~~~~~~~~~~~~~~~~i~-~~~~~i~~~~~~~~~---~~~~~~~--~~~~~i~n~~i~~~~~~g~~~~  157 (400)
T d1ru4a_          89 CGRAVFDFSFPDSQWVQASYGFYVT-GDYWYFKGVEVTRAG---YQGAYVI--GSHNTFENTAFHHNRNTGLEIN  157 (400)
T ss_dssp             GCCEEEECCCCTTCCCTTCCSEEEC-SSCEEEESEEEESCS---SCSEEEC--SSSCEEESCEEESCSSCSEEEC
T ss_pred             CCeeEEeCCccccccccccceEEEe-cCcEEEecceeecCc---ceeeeec--ccccccccceEecCCcceEEEe
Confidence            3333 3221           24444 688999999998753   2333332  3445566666655444444443

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.72  E-value=0.0001  Score=70.01  Aligned_cols=158  Identities=16%  Similarity=0.162  Sum_probs=102.3

Q ss_pred             eEec-cCc-ceeeeccceE---------EeCC---cEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeee
Q 017716          126 LSVS-SYK-TIDGRGQRVK---------LTGK---GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLR  191 (367)
Q Consensus       126 l~V~-snk-TI~G~G~gi~---------I~G~---gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs  191 (367)
                      |.|. +.. ||+|+|+.--         ....   -|.+..++||.|++|+++....   =.+.+. .+++|+||++++.
T Consensus        71 i~I~G~G~g~IDG~G~~ww~~~~~~~~~~~~p~p~~i~~~~~~nv~i~~i~l~nsp~---w~~~~~-~~~nv~i~~i~I~  146 (349)
T d1hg8a_          71 ITITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPV---HCFDIT-GSSQLTISGLILD  146 (349)
T ss_dssp             CEEEECTTCEEECCGGGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEECCSS---EEEEEE-SCEEEEEEEEEEE
T ss_pred             EEEEecCCCEEeCCChHHhcccccCCCCCCCCcceEEEEeccCCeEEEeeEEeCCCc---eEEEEe-ccceEEEEEEEEE
Confidence            4443 344 9999975320         0011   1455789999999999998653   457786 7999999999984


Q ss_pred             c-----------------CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCCCcceeEEEecceecCCCCCC---
Q 017716          192 D-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH---  251 (367)
Q Consensus       192 ~-----------------~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~---  251 (367)
                      .                 ..|| ||+ ..+++|+|.+|.|...+-+.-+...        -+|++-+++|.+...-.   
T Consensus       147 ~~~~~~~~~~~~~~~~~~NtDG-iDi-~~s~nv~I~n~~i~~gDD~iaik~~--------~ni~i~n~~~~~ghg~sigs  216 (349)
T d1hg8a_         147 NRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHVTLDNNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHGLSIGS  216 (349)
T ss_dssp             CGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEEEEEEEEEECSSCSEEESSE--------EEEEEEEEEEESSCCEEEEE
T ss_pred             CCCcccccccccCccccCCCCe-Eee-CCCCeEEEEeeeecCCCCceEeccc--------cceEEEEEEEeCCccccccc
Confidence            3                 4699 899 5789999999999987777666532        36888888875432110   


Q ss_pred             -CccccC---eeEEEcceEECcccceeee--cC-----CceEEEEceeEecCCc-ceee
Q 017716          252 -PRVRYA---KVHLYNNYTRNWGIYAVCA--SV-----DSQIYSQCNIYEAGQK-KMAF  298 (367)
Q Consensus       252 -Pr~r~G---~~Hv~NN~~~n~~~yai~~--~~-----~a~i~~e~N~F~~g~~-~~v~  298 (367)
                       -....+   .+++.|+.+.+.. +++..  ..     =..|.+|+..+++... +...
T Consensus       217 ~G~~~~~~v~nV~v~n~~~~~~~-~g~rIKs~~g~gG~v~nI~~~ni~~~~v~~~pI~i  274 (349)
T d1hg8a_         217 VGGKSDNVVDGVQFLSSQVVNSQ-NGCRIKSNSGATGTINNVTYQNIALTNISTYGVDV  274 (349)
T ss_dssp             ESSSSCCEEEEEEEEEEEEEEEE-EEEEEEEETTCCEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             CCCcccccEEEEEEEcceecCCc-ceEEEEEEcCCCccEEEeEEEEEEEcCcccccEEE
Confidence             000112   3678888877642 33211  11     1367778877877654 4443

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=97.71  E-value=0.0007  Score=65.66  Aligned_cols=84  Identities=14%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec----CCCCceEeecCCceEEEeCceecCCCceeEe
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD----YDDGLIDITRESTDITVSRCHFSSHDKTMLI  223 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~----~~Dglidi~~~s~~VTIS~n~f~~H~k~~Li  223 (367)
                      |++.+++|+.|++|+++....   -.|.+. ++++|.|+++++..    ..|| ||+. . .+|+|.+|.|..-+-++-+
T Consensus       130 l~~~~~~n~~i~git~~nsp~---~~i~i~-~c~~v~i~nv~I~~~~~~NtDG-Idi~-~-snv~I~n~~i~~gDDcIai  202 (422)
T d1rmga_         130 LRLTDVTHFSVHDIILVDAPA---FHFTMD-TCSDGEVYNMAIRGGNEGGLDG-IDVW-G-SNIWVHDVEVTNKDECVTV  202 (422)
T ss_dssp             EEEEEEEEEEEEEEEEECCSS---CSEEEE-EEEEEEEEEEEEECCSSTTCCS-EEEE-E-EEEEEEEEEEESSSEEEEE
T ss_pred             EEEEeeeeeEEECcEecCCCc---eEEEEe-ccccEEEEeeEEcCCCCCccce-Eeec-c-cEEEEEeeEEEcCCCcccc
Confidence            788899999999999998653   467886 78999999999964    3588 8884 3 4899999999988877766


Q ss_pred             cCCCCCCCCcceeEEEecceec
Q 017716          224 GADPSHVADRCIRVTIHHCFFD  245 (367)
Q Consensus       224 G~sd~~~~d~~~~VT~hhN~f~  245 (367)
                      .+..       -+|++.++++.
T Consensus       203 ks~s-------~nI~i~n~~c~  217 (422)
T d1rmga_         203 KSPA-------NNILVESIYCN  217 (422)
T ss_dssp             EEEE-------EEEEEEEEEEE
T ss_pred             CCCC-------ccEEEEeeEEc
Confidence            5431       25666655543

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.44  E-value=0.00042  Score=65.45  Aligned_cols=95  Identities=18%  Similarity=0.369  Sum_probs=66.9

Q ss_pred             cEEEeeeccEEEeeeEEeCCC-----CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecC-CCce
Q 017716          147 GLRLKECEHVIICNLEFEGGK-----GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS-HDKT  220 (367)
Q Consensus       147 gi~i~~a~NVIIRnL~i~~g~-----~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~-H~k~  220 (367)
                      .|.+ .++||.|+||+|....     ....|||.+. .++||+|..|.|..+.|. |.++. ..+|+|++|.+.. |.-.
T Consensus       125 ~i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi~-~s~nv~I~n~~i~~gDDc-Iaik~-g~ni~i~n~~c~~~~g~s  200 (336)
T d1nhca_         125 AISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQDDC-IAINS-GESISFTGGTCSGGHGLS  200 (336)
T ss_dssp             CEEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSSEE-EEESS-EEEEEEESCEEESSSEEE
T ss_pred             EEEE-eeeEEEEEEEEEECcCCCccccCCCceEEcC-CccCEeEecceEeecCCc-EEeec-cceEEEEEeeecccccce
Confidence            3555 4788999999988643     2356999997 889999999999865554 88864 5789999998864 3322


Q ss_pred             e-EecCCCCCCCCcceeEEEecceecCCC
Q 017716          221 M-LIGADPSHVADRCIRVTIHHCFFDGTR  248 (367)
Q Consensus       221 ~-LiG~sd~~~~d~~~~VT~hhN~f~~~~  248 (367)
                      + -+|...   .+.-.+|+|.++.|.+..
T Consensus       201 igslG~~~---~~~v~nV~v~n~~~~~t~  226 (336)
T d1nhca_         201 IGSVGGRD---DNTVKNVTISDSTVSNSA  226 (336)
T ss_dssp             EEEESSSS---CCEEEEEEEEEEEEESCS
T ss_pred             eeeccccc---cccEEEEEEEeceeeCCC
Confidence            2 245432   122247899999887653

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=97.42  E-value=0.0015  Score=61.84  Aligned_cols=114  Identities=13%  Similarity=0.167  Sum_probs=80.4

Q ss_pred             CCceEecCCCceEEEEceeeecC-------CCCceEeecCCceEEEeCceecCCCceeE-ecCCCCCCCCcceeEEEecc
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDY-------DDGLIDITRESTDITVSRCHFSSHDKTML-IGADPSHVADRCIRVTIHHC  242 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~-------~Dglidi~~~s~~VTIS~n~f~~H~k~~L-iG~sd~~~~d~~~~VT~hhN  242 (367)
                      +.++.|..+++||+|-|..|.+.       .|+ |.+ .++++|-|-+|.|+.-....| .+..      ..-+||+-+|
T Consensus       123 g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~Da-I~i-~~s~nVwIDH~s~s~~~d~~~~~~~~------~s~~vTis~~  194 (359)
T d1idka_         123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTS------ADNRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCC------TTCEEEEESC
T ss_pred             cCceEEEecCceEEEECcEEecCCCCCCCCCCe-EEe-eCCccEEEEeeeeccCCCCceeeecc------CCCceeeece
Confidence            34666644689999999999764       354 777 578999999999874322222 2211      1127999999


Q ss_pred             eecCCCCCCCccc----------c--CeeEEEcceEECcccceeeecCCceEEEEceeEecC
Q 017716          243 FFDGTRQRHPRVR----------Y--AKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (367)
Q Consensus       243 ~f~~~~~R~Pr~r----------~--G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g  292 (367)
                      +|...........          .  ..+.+.+|+|.+.....-..+.+.++.+.||||.+.
T Consensus       195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~r~g~~~hv~NN~~~n~  256 (359)
T d1idka_         195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDI  256 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEE
T ss_pred             eeeccccccccccccccCCceecCCCccEEEEeeEEccCCCCCceecccceEEEECcEEECc
Confidence            9977665544332          1  257799999998877777777778899999999874

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.41  E-value=0.0014  Score=61.75  Aligned_cols=135  Identities=14%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec---------CCCCceEeecCCceEEEeCceecCCC
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD---------YDDGLIDITRESTDITVSRCHFSSHD  218 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~---------~~Dglidi~~~s~~VTIS~n~f~~H~  218 (367)
                      |.+.+++||.|++|+|+....+   .|.+.  ++||.|++..+..         ..|| ||+ ..+++|+|++|.|..-+
T Consensus       103 i~~~~~~nv~i~giti~nsp~~---~i~i~--~~nv~i~nv~I~~~~~~~~~~~NtDG-idi-~~s~nv~I~n~~i~~gD  175 (336)
T d1nhca_         103 MYIHDVEDSTFKGINIKNTPVQ---AISVQ--ATNVHLNDFTIDNSDGDDNGGHNTDG-FDI-SESTGVYISGATVKNQD  175 (336)
T ss_dssp             EEEEEEEEEEEESCEEECCSSC---CEEEE--EEEEEEESCEEECTTHHHHTCCSCCS-EEE-CSCEEEEEESCEEESSS
T ss_pred             EEEeccCCcEEEeEEEEcCCce---EEEEe--eeEEEEEEEEEECcCCCccccCCCce-EEc-CCccCEeEecceEeecC
Confidence            7888999999999999987654   46664  6799999999864         4699 899 57899999999999888


Q ss_pred             ceeEecCCCCCCCCcceeEEEecceecCCCC-------CCCccccCeeEEEcceEECcccceeee----cCC---ceEEE
Q 017716          219 KTMLIGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRVRYAKVHLYNNYTRNWGIYAVCA----SVD---SQIYS  284 (367)
Q Consensus       219 k~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~-------R~Pr~r~G~~Hv~NN~~~n~~~yai~~----~~~---a~i~~  284 (367)
                      -+.-+...        -++++-++.+.....       ....-..-.+++.|+.+.+.. .++..    +.+   ..|.+
T Consensus       176 DcIaik~g--------~ni~i~n~~c~~~~g~sigslG~~~~~~v~nV~v~n~~~~~t~-~G~rIKt~~~~~G~v~nV~f  246 (336)
T d1nhca_         176 DCIAINSG--------ESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITY  246 (336)
T ss_dssp             EEEEESSE--------EEEEEESCEEESSSEEEEEEESSSSCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEE
T ss_pred             CcEEeecc--------ceEEEEEeeecccccceeeeccccccccEEEEEEEeceeeCCC-ceeEEEEecCCCceEeeEEE
Confidence            77777643        156776655432111       111001124688888887653 34322    111   36777


Q ss_pred             EceeEecCCc-ceee
Q 017716          285 QCNIYEAGQK-KMAF  298 (367)
Q Consensus       285 e~N~F~~g~~-~~v~  298 (367)
                      |+...++... +.+.
T Consensus       247 ~ni~~~~V~~~pi~I  261 (336)
T d1nhca_         247 SNIQLSGITDYGIVI  261 (336)
T ss_dssp             EEEEEEEESSEEEEE
T ss_pred             EeEEEeccccccEEE
Confidence            7777777543 4444

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=97.34  E-value=0.00059  Score=65.70  Aligned_cols=45  Identities=22%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCC------CceEecCCCceEEEEceeeecC
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDV------DAIQIKPKSKHIWIDRCSLRDY  193 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~------DaI~i~~~s~nVWIDHcsfs~~  193 (367)
                      +....++++.|.+..|+.....+.      .++... .+++++|+||.|...
T Consensus        95 ~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~-~~~n~~I~~n~~~~~  145 (481)
T d1ofla_          95 LVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGK-VPQHCRIDHCSFTDK  145 (481)
T ss_dssp             SEEECSSSCEEESCEEESCCSSCSCSEEECCCTTCC-CCCSCEEESCEEECC
T ss_pred             eEEeEeecceEeeeEeecccccccceeccceeEEEe-eccceEEECceEecC
Confidence            334457788888888887543222      222332 467889999999753

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=97.09  E-value=0.01  Score=55.75  Aligned_cols=151  Identities=19%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             CceEecCCCceEEEEceeeecCCCC---------------ceEeecCCceEEEeCceecCCCc-eeEecCCC---CCCCC
Q 017716          172 DAIQIKPKSKHIWIDRCSLRDYDDG---------------LIDITRESTDITVSRCHFSSHDK-TMLIGADP---SHVAD  232 (367)
Q Consensus       172 DaI~i~~~s~nVWIDHcsfs~~~Dg---------------lidi~~~s~~VTIS~n~f~~H~k-~~LiG~sd---~~~~d  232 (367)
                      -+|.|. +++||+|-|..|....|.               .|.+ .++++|-|=.|-|+.-.. .+-+....   ....|
T Consensus        96 ~gl~i~-~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~-~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~d  173 (355)
T d1pcla_          96 GSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHD  173 (355)
T ss_pred             CEEEEE-ccccEEEEeeEeecCcccCCccccCCCcCccCceEEe-cCCccEEEECcccccCccccccccccccccccccc
Confidence            467775 789999999999754321               2334 346666666666652110 00000000   00011


Q ss_pred             c-------ceeEEEecceecCCCCCCCc--------cccC--eeEEEcceEECcccceeeecCCceEEEEceeEecCCcc
Q 017716          233 R-------CIRVTIHHCFFDGTRQRHPR--------VRYA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKK  295 (367)
Q Consensus       233 ~-------~~~VT~hhN~f~~~~~R~Pr--------~r~G--~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~  295 (367)
                      +       .-.||+-.|+|.+...-+.-        ...|  .+-+.+|+|.+.....-..+ ..++.+.||||.+....
T Consensus       174 g~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r-~G~~hv~NN~~~n~~~~  252 (355)
T d1pcla_         174 GALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVR-FGSIHAYNNVYLGDVKH  252 (355)
T ss_pred             ceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCccc-ccEEEEECcEEECCCCc
Confidence            1       13799999988764332211        1112  46788999988665543333 24688899999986543


Q ss_pred             eeeeeeccccCCcccCCCcEEEecCCeeeccccc
Q 017716          296 MAFKYLTEKASDKEEARTDCIRSEGDLSSLKLKA  329 (367)
Q Consensus       296 ~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~  329 (367)
                      .....+..    ......+.+..++|.|.++..+
T Consensus       253 ~~~~~~y~----~~~~~~~~v~~e~NyF~~~~~~  282 (355)
T d1pcla_         253 SVYPYLYS----FGLGTSGSILSESNSFTLSNLK  282 (355)
T ss_pred             ccccceee----eccCcCceEEEeCCEEECCCCc
Confidence            22111100    1223567788999999987544

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=97.06  E-value=0.0087  Score=56.29  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=85.7

Q ss_pred             CCceEecCCCceEEEEceeeecCCCC----------------------ceEeecCCceEEEeCceecCCCceeE-ecCCC
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDYDDG----------------------LIDITRESTDITVSRCHFSSHDKTML-IGADP  227 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~~Dg----------------------lidi~~~s~~VTIS~n~f~~H~k~~L-iG~sd  227 (367)
                      +.+|.+. .++||+|.|..|....++                      .|.+ .++++|.|-.|.|+...-.+| +... 
T Consensus       105 G~~i~i~-~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i-~~s~nvwIDH~s~s~~~D~~idi~~~-  181 (346)
T d1pxza_         105 GPCLFMR-KVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITM-RNVTNAWIDHNSLSDCSDGLIDVTLG-  181 (346)
T ss_dssp             SCCEEEE-SCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEE-ESCEEEEEESCEEECCSSEEEEEESS-
T ss_pred             cceEEEe-cCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeee-ecCceEEEECcEeeccccCceeEecC-
Confidence            3447776 789999999999754321                      3555 368899999999986544444 2211 


Q ss_pred             CCCCCcceeEEEecceecCCCCCCC--------ccccCeeEEEcceEECcccceeeecCCceEEEEceeEecCCcceeee
Q 017716          228 SHVADRCIRVTIHHCFFDGTRQRHP--------RVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQKKMAFK  299 (367)
Q Consensus       228 ~~~~d~~~~VT~hhN~f~~~~~R~P--------r~r~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g~~~~v~~  299 (367)
                            .-+||+-+|+|.+...-+.        .-...++.+.+|+|.+......-.....++.+.||||.+-..-.+  
T Consensus       182 ------s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~--  253 (346)
T d1pxza_         182 ------STGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI--  253 (346)
T ss_dssp             ------CEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE--
T ss_pred             ------CEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEE--
Confidence                  1279999999865322111        011235788899885432221111224678889999987533211  


Q ss_pred             eeccccCCcccCCCcEEEecCCeeeccccc
Q 017716          300 YLTEKASDKEEARTDCIRSEGDLSSLKLKA  329 (367)
Q Consensus       300 ~~~~~~~~~~~~~~g~~~~~gn~f~ng~~~  329 (367)
                               .....+.+..++|.|.++..+
T Consensus       254 ---------~~~~~~~v~~e~N~F~~~~~~  274 (346)
T d1pxza_         254 ---------GGSSNPTILSEGNSFTAPSES  274 (346)
T ss_dssp             ---------EEESCCEEEEESCEEECCSCG
T ss_pred             ---------eccCceEEEEEeeEEECCCCc
Confidence                     112356788899999876544

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=96.99  E-value=0.0022  Score=60.47  Aligned_cols=140  Identities=12%  Similarity=0.055  Sum_probs=90.7

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCC---------CCCc-eEecCCCceEEEEceeeecCCCCceEeec---CCceEEEeC
Q 017716          145 GKGLRLKECEHVIICNLEFEGGKGP---------DVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITR---ESTDITVSR  211 (367)
Q Consensus       145 G~gi~i~~a~NVIIRnL~i~~g~~~---------d~Da-I~i~~~s~nVWIDHcsfs~~~Dglidi~~---~s~~VTIS~  211 (367)
                      +.+|.+..++||+|.|.+|..+...         -.|+ +.|...+.+|=|-.|.|.+...+.+.-..   ..++||+-+
T Consensus       130 ~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~~~~~~~~~vT~hh  209 (353)
T d1o88a_         130 GDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHH  209 (353)
T ss_dssp             CCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSSSCCCCEEEEES
T ss_pred             CcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECcccccccccceeCCccCcCCceEEEEe
Confidence            4679999999999999999865421         1233 33444667777777777654444433221   245899999


Q ss_pred             ceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCCCcccc-CeeEEEcceEECccccee---eecCCceEEEEc
Q 017716          212 CHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAV---CASVDSQIYSQC  286 (367)
Q Consensus       212 n~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~Pr~r~-G~~Hv~NN~~~n~~~yai---~~~~~a~i~~e~  286 (367)
                      |+|.++.. .-++..         -.+-+.+|+|.+.....-..+. +.+.+.||||.+...-..   .......+...+
T Consensus       210 N~~~~~~~R~P~~~~---------g~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~~p~~~~~~~~~~g~~~~~~  280 (353)
T d1o88a_         210 NYYNDVNARLPLQRG---------GLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKG  280 (353)
T ss_dssp             CEEEEEEECSCEEES---------SEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEECSSSSSCCEEEEES
T ss_pred             eEEcCCccCCcceec---------ceEEEEEEEEecccceEEecCCCceEEEEeeEEecccCCccccccCCcceeEEECC
Confidence            99985431 122221         1567788999887766555554 578999999997643111   223445788889


Q ss_pred             eeEecCC
Q 017716          287 NIYEAGQ  293 (367)
Q Consensus       287 N~F~~g~  293 (367)
                      |+|....
T Consensus       281 n~~~~~~  287 (353)
T d1o88a_         281 NNITKPA  287 (353)
T ss_dssp             CSCCSTT
T ss_pred             Ceeeccc
Confidence            9887654

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=96.88  E-value=0.0081  Score=56.80  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=76.7

Q ss_pred             CCceEecCCCceEEEEceeeecCC------CCceEeecCCceEEEeCceecCC-CceeEecCCCCCCCCcceeEEEecce
Q 017716          171 VDAIQIKPKSKHIWIDRCSLRDYD------DGLIDITRESTDITVSRCHFSSH-DKTMLIGADPSHVADRCIRVTIHHCF  243 (367)
Q Consensus       171 ~DaI~i~~~s~nVWIDHcsfs~~~------Dglidi~~~s~~VTIS~n~f~~H-~k~~LiG~sd~~~~d~~~~VT~hhN~  243 (367)
                      +.++.+..+++||+|-|..|.+..      +-.|.+ .++++|=|=.|.|+.- +..++...      ...-.||+-.|+
T Consensus       123 g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i-~~s~nvwIDH~s~s~~~d~~~~~~~------~~s~~vTvs~~~  195 (359)
T d1qcxa_         123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITV-DDSDLVWIDHVTTARIGRQHIVLGT------SADNRVTISYSL  195 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEE-ESCCCEEEESCEEEEESSCSEEECS------SCCEEEEEESCE
T ss_pred             ccceEEEeCCccEEEeCeEEecCCCCCCCCCCeEEe-eCCCCEEEEeeeccccCCCceEeec------cCCCceEeeccE
Confidence            345655337899999999998643      223666 4678888888887621 11222211      112379999999


Q ss_pred             ecCCCCCCCccc----------cC--eeEEEcceEECcccceeeecCCceEEEEceeEecC
Q 017716          244 FDGTRQRHPRVR----------YA--KVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (367)
Q Consensus       244 f~~~~~R~Pr~r----------~G--~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g  292 (367)
                      |......+....          .+  .+.+.+|+|.+.....-..+.+..+.+.||||.+.
T Consensus       196 f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g~~~hv~NN~~~n~  256 (359)
T d1qcxa_         196 IDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNF  256 (359)
T ss_dssp             EECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEE
T ss_pred             eccCccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccCCceEEEEeeEEeCc
Confidence            977655543321          12  47899999998776666666666788999999874

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=96.87  E-value=0.0019  Score=60.82  Aligned_cols=93  Identities=16%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             EEEeeec-cEEEeeeEEeCCC------CCCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceecCCCce
Q 017716          148 LRLKECE-HVIICNLEFEGGK------GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKT  220 (367)
Q Consensus       148 i~i~~a~-NVIIRnL~i~~g~------~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~H~k~  220 (367)
                      |.+..++ ||.|+||+|....      ....|||.+.  +++|+|.+|.+..+.| .|.++. ..+|+|++|.+.. ..+
T Consensus       120 ~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi~--s~nV~I~n~~i~~gDD-cIaik~-g~ni~i~n~~c~~-ghG  194 (333)
T d1k5ca_         120 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS--ANNVTIQNCIVKNQDD-CIAIND-GNNIRFENNQCSG-GHG  194 (333)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEEE--CSSEEEESCEEESSSC-SEEEEE-EEEEEEESCEEES-SCC
T ss_pred             EEEecccCcEEEEeEEEEeeecCCCccCCCcceEeEe--cceEEEEecEEecCCC-EEEEcC-ccEEEEEEEEECC-CCc
Confidence            4454443 7888888887632      2346999994  7899999999988766 488864 5789999999874 226


Q ss_pred             eEecCCCCCCCCcceeEEEecceecCC
Q 017716          221 MLIGADPSHVADRCIRVTIHHCFFDGT  247 (367)
Q Consensus       221 ~LiG~sd~~~~d~~~~VT~hhN~f~~~  247 (367)
                      +-||+--..  +.--+|++.++.|.+.
T Consensus       195 isiGS~g~~--~~V~nV~v~n~~~~~t  219 (333)
T d1k5ca_         195 ISIGSIATG--KHVSNVVIKGNTVTRS  219 (333)
T ss_dssp             EEEEEECTT--CEEEEEEEESCEEEEE
T ss_pred             eeeecccCC--CcEEEEEEEEeEEeCC
Confidence            777753211  1113789988888764

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=96.58  E-value=0.0054  Score=57.41  Aligned_cols=109  Identities=15%  Similarity=0.264  Sum_probs=76.1

Q ss_pred             hHHHhhhc----CCCeEEEEEeceEEEecceeEec---cCcceeeeccceEE-eCC-------------cEEEeeeccEE
Q 017716           99 SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-------------GLRLKECEHVI  157 (367)
Q Consensus        99 SLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~---snkTI~G~G~gi~I-~G~-------------gi~i~~a~NVI  157 (367)
                      |+++||++    +..+++|+-..|+.+  +.|.|.   +|+||+|.|..-++ ...             .+.+ .+++++
T Consensus        21 TIq~AIda~p~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat~~v-~~~~f~   97 (319)
T d1gq8a_          21 TVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAA-VGAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEE-CSTTCE
T ss_pred             CHHHHHhhCccCCCCcEEEEEcCceEE--EEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccceee-ecCCeE
Confidence            57788865    345566666789984  667774   58999999865444 321             2444 479999


Q ss_pred             EeeeEEeCCCC---CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          158 ICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       158 IRnL~i~~g~~---~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      ++||+|+...+   ...-|+.+.  +.++.+.+|.|.-..|-|++-+   ..--+.+|+|.
T Consensus        98 a~nitf~Nt~g~~~~QAvAl~v~--gd~~~fy~c~f~G~QDTL~~~~---gr~yf~~c~Ie  153 (319)
T d1gq8a_          98 ARDITFQNTAGAAKHQAVALRVG--SDLSAFYRCDILAYQDSLYVHS---NRQFFINCFIA  153 (319)
T ss_dssp             EEEEEEEECCCGGGCCCCSEEEC--CTTEEEEEEEEECSTTCEEECS---SEEEEESCEEE
T ss_pred             EEeeEEEeCCCCCCCcEEEEEec--CcceEEEcceecccCCeeEECC---CCEEEEeeEEE
Confidence            99999997542   123466774  6689999999999988877642   34556777766

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.54  E-value=0.031  Score=53.44  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=75.3

Q ss_pred             CCcEEEeeeccEEEeeeEEeCCCCC-------------C-CCceEecCCCceEEEEceeeecCCCCceEeec-------C
Q 017716          145 GKGLRLKECEHVIICNLEFEGGKGP-------------D-VDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-------E  203 (367)
Q Consensus       145 G~gi~i~~a~NVIIRnL~i~~g~~~-------------d-~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~-------~  203 (367)
                      +..|.|.+++||+|.|.+|..+...             . +..|.|..++.+|=|-+|.|.+....+|.-..       +
T Consensus       183 ~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g  262 (399)
T d1bn8a_         183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTT
T ss_pred             CceEEEecCccEEEECceeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCCCCcccccC
Confidence            5678898999999999999875421             1 23456666788899999998765444333211       2


Q ss_pred             CceEEEeCceecCCCc-eeEecCCCCCCCCcceeEEEecceecCCCCCC--Cc-----cc-cCeeEEEcceEECcc
Q 017716          204 STDITVSRCHFSSHDK-TMLIGADPSHVADRCIRVTIHHCFFDGTRQRH--PR-----VR-YAKVHLYNNYTRNWG  270 (367)
Q Consensus       204 s~~VTIS~n~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~f~~~~~R~--Pr-----~r-~G~~Hv~NN~~~n~~  270 (367)
                      ...||+-+|+|.+..- .=++.         .-++-+-+|+|.+.....  |.     .+ .+++.+.||||.+..
T Consensus       263 ~~~vT~hhN~f~~~~~R~Prvr---------~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~EgN~F~~~~  329 (399)
T d1bn8a_         263 KLKITLHHNRYKNIVQRAPRVR---------FGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPG  329 (399)
T ss_dssp             CCCEEEESCEEEEEEECSSEES---------SCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTT
T ss_pred             CceEEEEeeEecCccccCcccc---------ccEEEEEccEeECCCcccccccceeeccccCceEEEEeeEEECCC
Confidence            2379999999974321 11111         124666789998765421  11     12 257899999998643

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.52  E-value=0.045  Score=51.19  Aligned_cols=120  Identities=13%  Similarity=0.261  Sum_probs=78.9

Q ss_pred             hhHHHhhhc----CCCeEEEEEeceEEEecceeEec-cCcceeeeccceEEe-C-------------------CcEEEee
Q 017716           98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQRVKLT-G-------------------KGLRLKE  152 (367)
Q Consensus        98 GSLr~Ai~~----~~P~~IVf~vsGtI~l~~~l~V~-snkTI~G~G~gi~I~-G-------------------~gi~i~~  152 (367)
                      -++++||++    +.|+ +|+-..|+.  .+.|.|. +++||+|.|..-++. +                   ..+.+ .
T Consensus        19 ~TIq~AI~a~p~~~~~~-vI~I~~G~Y--~E~V~I~k~~itl~G~~~~~tiI~~~~~~~~~~~~~~~~~t~~sat~~v-~   94 (342)
T d1qjva_          19 KTIADAIASAPAGSTPF-VILIKNGVY--NERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITI-S   94 (342)
T ss_dssp             SSHHHHHHTSCSSSSCE-EEEECSEEE--CCCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEE-C
T ss_pred             hhHHHHHHhCccCCceE-EEEEcCeEE--EEEEEEcCCCeEEEEcCCCCcEEEecccccccccCCCcccccceeeEEE-e
Confidence            358888875    3344 455568988  4667785 689999997544442 1                   12455 4


Q ss_pred             eccEEEeeeEEeCCCC-----------------CCCCceEecCCCceEEEEceeeecCCCCceEeecCCceEEEeCceec
Q 017716          153 CEHVIICNLEFEGGKG-----------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS  215 (367)
Q Consensus       153 a~NVIIRnL~i~~g~~-----------------~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~  215 (367)
                      +++++++||+|+....                 ...-||.|...+..+-+-+|.|.-..|-|++-.   ..--+.+|+|.
T Consensus        95 a~~f~a~nitf~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~~~gD~~~fy~C~f~G~QDTL~~~~---gr~y~~~c~Ie  171 (342)
T d1qjva_          95 AKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSG---GRSFFSDCRIS  171 (342)
T ss_dssp             SSSCEEEEEEEEECCCHHHHHTSCTTCTTCCSCCCCCSEEECTTCCSEEEEEEEEECSTTCEEECS---SEEEEESCEEE
T ss_pred             eCCeEEEeeEEecCCccccccccccccccccCCCceEEEEeecCCCceeEEeeeeccccceeEeCC---CCEEEEeeEEe
Confidence            8999999999997421                 113466664356788899999998888877642   34456777775


Q ss_pred             CCCceeEecC
Q 017716          216 SHDKTMLIGA  225 (367)
Q Consensus       216 ~H~k~~LiG~  225 (367)
                      .. -=+++|.
T Consensus       172 G~-vDFIfG~  180 (342)
T d1qjva_         172 GT-VDFIFGD  180 (342)
T ss_dssp             ES-EEEEEES
T ss_pred             cc-CcEEecC
Confidence            32 2345554

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=96.14  E-value=0.026  Score=53.12  Aligned_cols=130  Identities=12%  Similarity=0.102  Sum_probs=83.7

Q ss_pred             eeeEEeCCC--CCCCCceEecCCCceEEEEceeeec-----CCCCceEeecCCceEEEeCceecCCCceeEecCCCCCCC
Q 017716          159 CNLEFEGGK--GPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVA  231 (367)
Q Consensus       159 RnL~i~~g~--~~d~DaI~i~~~s~nVWIDHcsfs~-----~~Dglidi~~~s~~VTIS~n~f~~H~k~~LiG~sd~~~~  231 (367)
                      +|++|++..  ......|.+. .+++|.|+++.+..     ..|| ||+ ..+.+|+|++|.|...+-++.+.+....  
T Consensus       160 ~nv~i~~iti~ns~~~~~~~~-~~~~v~i~n~~I~~~~~~~NtDG-idi-~~s~nv~I~n~~i~~gDD~i~~ks~~~~--  234 (376)
T d1bhea_         160 KNFTLYNVSLINSPNFHVVFS-DGDGFTAWKTTIKTPSTARNTDG-IDP-MSSKNITIAYSNIATGDDNVAIKAYKGR--  234 (376)
T ss_dssp             EEEEEEEEEEECCSSCSEEEE-SCEEEEEEEEEEECCTTCSSCCS-EEE-ESCEEEEEESCEEECSSCSEEEEECTTS--
T ss_pred             ccEEEEeeEEecCCceEEEEe-CCceEEEEeEeccCCccCCCcce-eec-cccceEEEEeceeecCCCceeeecccCC--
Confidence            455665542  3456677776 78999999999864     3688 898 5789999999999987776665432211  


Q ss_pred             CcceeEEEecceecCCCCCCCccccC-------eeEEEcceEECcccceeee--cC--C---ceEEEEceeEecCCccee
Q 017716          232 DRCIRVTIHHCFFDGTRQRHPRVRYA-------KVHLYNNYTRNWGIYAVCA--SV--D---SQIYSQCNIYEAGQKKMA  297 (367)
Q Consensus       232 d~~~~VT~hhN~f~~~~~R~Pr~r~G-------~~Hv~NN~~~n~~~yai~~--~~--~---a~i~~e~N~F~~g~~~~v  297 (367)
                      ....+|++.+|.|....  .  +..|       .+++.|+.+++.. .++..  ..  +   ..|.+|+..++....+..
T Consensus       235 ~~~~ni~i~n~~~~~~~--g--~~iGs~~~~v~nv~i~n~~~~~~~-~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~  309 (376)
T d1bhea_         235 AETRNISILHNDFGTGH--G--MSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIV  309 (376)
T ss_dssp             CCEEEEEEEEEEECSSS--C--EEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEEEEESCSEEEE
T ss_pred             CCcceEEEEeeEEecCC--C--ceeccccCCEEEEEEEeeeEcCCC-ceEEEEecCCCccEEEEEEEEeEEEeccCccEE
Confidence            11237899898886532  1  2222       4678888887643 34432  11  1   247777777777665544


Q ss_pred             e
Q 017716          298 F  298 (367)
Q Consensus       298 ~  298 (367)
                      .
T Consensus       310 i  310 (376)
T d1bhea_         310 I  310 (376)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=95.91  E-value=0.016  Score=54.64  Aligned_cols=77  Identities=13%  Similarity=0.048  Sum_probs=56.7

Q ss_pred             cCcceeeeccceEEeCC---cEEEeeeccEEEeeeEEeC--CCCCCCCceEecCCCceEEEEceeeecCCCCceEeecCC
Q 017716          130 SYKTIDGRGQRVKLTGK---GLRLKECEHVIICNLEFEG--GKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRES  204 (367)
Q Consensus       130 snkTI~G~G~gi~I~G~---gi~i~~a~NVIIRnL~i~~--g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~~s  204 (367)
                      +|.+|.|    ++|...   .+.+..++||.|++++++.  ......|||.+   +++|+|++|.+.-+.|. |.++  +
T Consensus       132 ~n~~i~g----iti~~s~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~---~~~~~i~~~~~~~gDD~-i~~~--s  201 (373)
T d1ogmx2         132 QTWYCVG----PTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI---YPNSVVHDVFWHVNDDA-IKIY--Y  201 (373)
T ss_dssp             EEEEEES----CEEECCSSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC---CTTCEEEEEEEEESSCS-EECC--S
T ss_pred             eEEEEeC----EEEECCCeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec---cCCEEEEeeEEecCCCE-EEec--C
Confidence            3455554    355543   4677789999999999974  33345788876   46899999999876666 6774  6


Q ss_pred             ceEEEeCceecC
Q 017716          205 TDITVSRCHFSS  216 (367)
Q Consensus       205 ~~VTIS~n~f~~  216 (367)
                      .+++|++|.+..
T Consensus       202 ~~i~v~n~~~~~  213 (373)
T d1ogmx2         202 SGASVSRATIWK  213 (373)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCEEEEEEEEEC
Confidence            799999999864

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=95.68  E-value=0.071  Score=50.10  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=85.4

Q ss_pred             CceEec--CCCceEEEEceeeecCC----------------CCceEeecCCceEEEeCceecCCC-ceeEecCC------
Q 017716          172 DAIQIK--PKSKHIWIDRCSLRDYD----------------DGLIDITRESTDITVSRCHFSSHD-KTMLIGAD------  226 (367)
Q Consensus       172 DaI~i~--~~s~nVWIDHcsfs~~~----------------Dglidi~~~s~~VTIS~n~f~~H~-k~~LiG~s------  226 (367)
                      .++.|.  .+++||+|-|..|+...                |. |.+..++++|=|=.|.|+... ..+.++..      
T Consensus       103 ~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Da-i~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~  181 (361)
T d1pe9a_         103 GSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDA-MNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYV  181 (361)
T ss_dssp             SEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCS-EEEETTCEEEEEESCEEECTTSCGGGCCEETTEECC
T ss_pred             eeEEEeeccccceEEEEeEEeecCccCCCccccCCCcccCCCe-eEEecCCceEEEEccEeccCCccccccccccCccee
Confidence            456663  26789999999998543                33 555556778877777776311 11111110      


Q ss_pred             --CCCC--CCcceeEEEecceecCCCCCC--------Cccc--cCeeEEEcceEECcccceeeecCCceEEEEceeEecC
Q 017716          227 --PSHV--ADRCIRVTIHHCFFDGTRQRH--------PRVR--YAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAG  292 (367)
Q Consensus       227 --d~~~--~d~~~~VT~hhN~f~~~~~R~--------Pr~r--~G~~Hv~NN~~~n~~~yai~~~~~a~i~~e~N~F~~g  292 (367)
                        |...  ....-.||+-+|+|.++..-+        ....  ..++.+.+|+|.+.....=..+. .++.+.||||.+.
T Consensus       182 ~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~r~-G~~Hv~NNy~~n~  260 (361)
T d1pe9a_         182 QHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRY-GSIHSFNNVFKGD  260 (361)
T ss_dssp             CCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEESS-CEEEEESCEEEEE
T ss_pred             eeeeeEEeecCccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCCcCcCCCeeC-ceEEEECceeecC
Confidence              1100  011137999999886532211        1111  13689999999876544333343 4678889999986


Q ss_pred             CcceeeeeeccccCCcccCCCcEEEecCCeeecccc
Q 017716          293 QKKMAFKYLTEKASDKEEARTDCIRSEGDLSSLKLK  328 (367)
Q Consensus       293 ~~~~v~~~~~~~~~~~~~~~~g~~~~~gn~f~ng~~  328 (367)
                      .......+..    .......+.+..++|.|.++..
T Consensus       261 ~~~~~~~~~y----~~~~~~~a~il~E~NyF~~~~~  292 (361)
T d1pe9a_         261 AKDPVYRYQY----SFGIGTSGSVLSEGNSFTIANL  292 (361)
T ss_dssp             TTCSSSCCCC----SEEECTTCEEEEESCEEEEETC
T ss_pred             cCccccccce----eeecCCCCEEEEEceEEECCCC
Confidence            5422211110    0112346678899999987643

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=95.31  E-value=0.027  Score=52.95  Aligned_cols=71  Identities=11%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             EEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeec------CCCCceEeecCCceEEEeCceecCCCcee
Q 017716          148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD------YDDGLIDITRESTDITVSRCHFSSHDKTM  221 (367)
Q Consensus       148 i~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~------~~Dglidi~~~s~~VTIS~n~f~~H~k~~  221 (367)
                      |++..++|++|++|+++....   =.+.+. .+++|-|+.+.+..      ..|| +|+   +.+++|++|.|..-+-+.
T Consensus       126 i~~~~~~n~~i~giti~~s~~---~~~~~~-~~~~v~i~~~~i~~~~~~~~n~dg-i~~---~~~~~i~~~~~~~gDD~i  197 (373)
T d1ogmx2         126 NNLGGGQTWYCVGPTINAPPF---NTMDFN-GNSGISSQISDYKQVGAFFFQTDG-PEI---YPNSVVHDVFWHVNDDAI  197 (373)
T ss_dssp             SCCCSSEEEEEESCEEECCSS---CCEEEC-SSSCEEEEEEEEEEECCCSTTCCC-CBC---CTTCEEEEEEEEESSCSE
T ss_pred             EEEEcceEEEEeCEEEECCCe---eEEEEc-cCCeEEEEEEEEEecCCCCCCCee-eec---cCCEEEEeeEEecCCCEE
Confidence            355679999999999998653   356665 78888888888852      3577 676   468999999998777777


Q ss_pred             EecCC
Q 017716          222 LIGAD  226 (367)
Q Consensus       222 LiG~s  226 (367)
                      -++++
T Consensus       198 ~~~s~  202 (373)
T d1ogmx2         198 KIYYS  202 (373)
T ss_dssp             ECCST
T ss_pred             EecCC
Confidence            66654

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=95.30  E-value=0.025  Score=52.92  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=57.3

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCceEeec---C--CceEEEeCceecCCCce
Q 017716          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR---E--STDITVSRCHFSSHDKT  220 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dglidi~~---~--s~~VTIS~n~f~~H~k~  220 (367)
                      .||.+. ++||.|+|-.|+.+    +|+|.|. .++||+|+.|.+..++ | |.+..   +  ..+|+|++|.|.+...+
T Consensus       151 DGidi~-s~nV~I~n~~i~~g----DDcIaik-~g~ni~i~n~~c~~gh-G-isiGS~g~~~~V~nV~v~n~~~~~t~~G  222 (333)
T d1k5ca_         151 DGFDVS-ANNVTIQNCIVKNQ----DDCIAIN-DGNNIRFENNQCSGGH-G-ISIGSIATGKHVSNVVIKGNTVTRSMYG  222 (333)
T ss_dssp             CSEEEE-CSSEEEESCEEESS----SCSEEEE-EEEEEEEESCEEESSC-C-EEEEEECTTCEEEEEEEESCEEEEEEEE
T ss_pred             ceEeEe-cceEEEEecEEecC----CCEEEEc-CccEEEEEEEEECCCC-c-eeeecccCCCcEEEEEEEEeEEeCCcEE
Confidence            689995 89999999999975    5999997 6899999999998876 5 55532   2  26999999999987776


Q ss_pred             eEe
Q 017716          221 MLI  223 (367)
Q Consensus       221 ~Li  223 (367)
                      .-|
T Consensus       223 ~rI  225 (333)
T d1k5ca_         223 VRI  225 (333)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=95.18  E-value=0.03  Score=52.18  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=55.0

Q ss_pred             CcEEEeeeccEEEeeeEEeCCCCCCCCceEecCCCceEEEEceeeecCCCCc--eEeecC----CceEEEeCceecCCCc
Q 017716          146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGL--IDITRE----STDITVSRCHFSSHDK  219 (367)
Q Consensus       146 ~gi~i~~a~NVIIRnL~i~~g~~~d~DaI~i~~~s~nVWIDHcsfs~~~Dgl--idi~~~----s~~VTIS~n~f~~H~k  219 (367)
                      .||.+..++||.|+|-.|+.+    +|+|.+. .+++|+|..|.+.... |.  ..+...    -.+|++++|.|.+-..
T Consensus       153 DGidi~~s~nV~I~n~~i~tg----DDcIaik-s~~ni~i~n~~c~~~h-G~sigslG~~~~~~v~nV~v~n~~i~~t~~  226 (335)
T d1czfa_         153 DAFDVGNSVGVNIIKPWVHNQ----DDCLAVN-SGENIWFTGGTCIGGH-GLSIGSVGDRSNNVVKNVTIEHSTVSNSEN  226 (335)
T ss_dssp             CSEEECSCEEEEEESCEEECS----SCSEEES-SEEEEEEESCEEESSC-CEEEEEECSSSCCEEEEEEEEEEEEEEEEE
T ss_pred             CceEecCCCeEEEEeeEEecC----CceEEec-CceEEEEEEEEEECCC-CccccccCCCCcCCEeEEEEEeeEEECCCc
Confidence            679998889999999999865    6999998 6899999999886543 32  122111    3699999999998776


Q ss_pred             eeEe
Q 017716          220 TMLI  223 (367)
Q Consensus       220 ~~Li  223 (367)
                      ++.|
T Consensus       227 g~rI  230 (335)
T d1czfa_         227 AVRI  230 (335)
T ss_dssp             EEEE
T ss_pred             cceE
Confidence            6655

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.61  E-value=0.31  Score=43.54  Aligned_cols=35  Identities=9%  Similarity=0.096  Sum_probs=19.5

Q ss_pred             eEEEEceeeecCCCCceEeecCCceEEEeCceecC
Q 017716          182 HIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS  216 (367)
Q Consensus       182 nVWIDHcsfs~~~Dglidi~~~s~~VTIS~n~f~~  216 (367)
                      +..|..|.+.+..+.-+++......++|.+|.+.+
T Consensus       195 ~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~  229 (400)
T d1ru4a_         195 GNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFR  229 (400)
T ss_dssp             CCEEESCEEESCSSCSEECTTCCSCCEEESCEEES
T ss_pred             cceeecceeeeccCcceeEEecCCCEEEECeEEEc
Confidence            44455555554444345555555666677776654